Citrus Sinensis ID: 017184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHcHHHHHHHHccEEcEEcccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHccccEEEEEccccccccccccccccEEEEcccccccccccccccEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEcccccccEcHHHcccccEEEEcccEEEEcccccccEEEEccEcHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mggsrsmifadcsssttarlvpfgrsrllcgggalcarrrlhvgvgpslpaslrttltvhsspspslpvmnvscsatmaSEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILvgdrkdsaTYVRNKKKAcqsvginsfevhlpedtseQEVLKHISvfnddpsvhgilvqlplpchideqSILNAVSMekdvdgfhplnigrlamrgreplfipctpkgCIELLHRygfdikgkRAVVIGRSNIVGMPAALLLQREDATVSIvhsrtknpeeiTRQADIIISAvgqpnmvrgswikpgaviidvginpvedaksprgyrlvgdVCYEEACEVasaitpvpggvgpMTIAMLLSNTLTSAKRVHNFQ
Flexible Loop (DISEMBL)
MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTltvhsspspslpVMNVSCSATMASEAsakvidgkavAKQIRDEITgevsrmkdaigvVPGLAVILVGDRKDSATYVRNKKkacqsvginsFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSivhsrtknpeeitrqADIIISavgqpnmvrgSWIKPGAVIIDVGinpvedaksprGYRLVGDVCYEEACEVASaitpvpggvGPMTIAMLLSNTLTSAKRVHNFQ
Low Complexity Region (SEG)
MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ
Disordered region (IsUnstruct)
****************TARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPA**********************************VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPE****QEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR*****EITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTL**********
Disordered Region (DISOPRED)
************************************************************************************KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH***
Disordered Region (DISEMBL)
MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ
Disordered Region (DISPRO)
***********CSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTT*************************ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
A0LE04	285	Bifunctional protein FolD	yes	no	0.754	0.992	0.584	2e-86
B3EJG9	298	Bifunctional protein FolD	yes	no	0.773	0.973	0.544	2e-84
B9M769	280	Bifunctional protein FolD	yes	no	0.741	0.992	0.554	4e-84
B4S820	295	Bifunctional protein FolD	yes	no	0.770	0.979	0.518	1e-83
A5GAM5	280	Bifunctional protein FolD	yes	no	0.741	0.992	0.550	2e-83
O96553	968	C-1-tetrahydrofolate synt	yes	no	0.768	0.297	0.551	4e-83
Q2RIB4	280	Bifunctional protein FolD	yes	no	0.738	0.989	0.562	1e-82
A7HSV9	298	Bifunctional protein FolD	yes	no	0.762	0.959	0.532	4e-82
A1BF67	295	Bifunctional protein FolD	yes	no	0.773	0.983	0.510	4e-82
A4SER8	295	Bifunctional protein FolD	yes	no	0.770	0.979	0.522	8e-82

>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/291 (58%), Positives = 201/291 (69%), Gaps = 8/291 (2%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A VIDGKA+A+ +R+E+  EV R+K    + PGLAV+LVG    S  YVRNKK+AC++ G
Sbjct: 2   AHVIDGKAIAQSVREELRMEVERLKLNHQLTPGLAVVLVGADPASQVYVRNKKRACETAG 61

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           I SF   L   TS+ E+L  I   N D +VHGILVQLPLP HIDEQ +L A+S  KD DG
Sbjct: 62  IASFSHELAATTSQAELLALIEQLNQDDAVHGILVQLPLPKHIDEQKVLEAISPSKDADG 121

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP N+GRL     +P F PCTP G +E+L   G D KGK AVVIGRSNIVG P AL+L 
Sbjct: 122 FHPYNVGRLVT--GDPTFQPCTPWGVMEMLKVSGVDPKGKHAVVIGRSNIVGKPVALMLL 179

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
              ATV+I HSRT +  E  ++ADI+++AVG+ NMV GSWIK GAV+IDVGIN  ED K 
Sbjct: 180 AAHATVTICHSRTPDLAETVKRADIVVAAVGRANMVPGSWIKKGAVVIDVGINRGEDGK- 238

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
                L GDV Y    E ASAITPVPGGVGPMTIAMLL NT+  AKR HN 
Sbjct: 239 -----LCGDVDYASCFEHASAITPVPGGVGPMTIAMLLKNTVEGAKRAHNI 284

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
Magnetococcus sp. (strain MC-1) (taxid: 156889)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 9

>sp|B3EJG9|FOLD_CHLPB Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain BS1) GN=folD PE=3 SV=1

 Score =  313 bits (802), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/294 (54%), Positives = 199/294 (67%), Gaps = 4/294 (1%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK V+  ++ E+   V   +     VPGL VI+VG+   S  YVRNK K+C+ +G+N
Sbjct: 3   IIDGKQVSANLKQELKTAVEACRQKTDAVPGLTVIIVGEDPASQVYVRNKSKSCKEIGMN 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LP +T+E E+L  I   N+D  VHGILVQ PLP HID+ ++  A+   KDVDGFH
Sbjct: 63  STVIELPAETTEAELLAGIEALNNDNDVHGILVQQPLPAHIDDYAVTMAILPSKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQR 264
           P N+G++ +   +  FI CTP G +EL  RY  + KGK  VVIGRSNIVG P A L+LQ+
Sbjct: 123 PENVGQMVLGNLDKCFISCTPYGILELFSRYSIETKGKHCVVIGRSNIVGKPMANLMLQK 182

Query: 265 ---EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
               + TV+I HS T N  EITRQADI+I+A+G+P  V    IKPGAV+IDVGIN VED 
Sbjct: 183 LKESNCTVTICHSATSNMPEITRQADIVIAAIGRPEYVTEDMIKPGAVVIDVGINRVEDP 242

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
               GYRLVGDV YE   + ASAITPVPGGVGPMTIAMLL NTL S  RVHN +
Sbjct: 243 SRKSGYRLVGDVDYENVNKKASAITPVPGGVGPMTIAMLLKNTLQSFMRVHNIE 296

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Chlorobium phaeobacteroides (strain BS1) (taxid: 331678)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B9M769|FOLD_GEOSF Bifunctional protein FolD OS=Geobacter sp. (strain FRC-32) GN=folD PE=3 SV=1

 Score =  311 bits (798), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 159/287 (55%), Positives = 205/287 (71%), Gaps = 9/287 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           AK+IDGKA+A +IR EIT EV+++  A G+ PGLAV+LVG+   S  YV  K+KAC+ VG
Sbjct: 2   AKIIDGKAIAAKIRGEITAEVAKLA-AQGITPGLAVVLVGEDPASKVYVSMKEKACKDVG 60

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           I S E  LP +T+E+E+L+ I   N D  +HGILVQLPLP  I+ + +L A+S EKD DG
Sbjct: 61  IFSDEYKLPAETTEEELLQLIDKLNKDRKIHGILVQLPLPKQINTEKVLEAISPEKDADG 120

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP N+GRL +   +PLF PCTP G + +L   G D+ GK  VV+GRSNIVG P A +  
Sbjct: 121 FHPYNVGRLVIG--KPLFQPCTPYGVMVMLKETGVDLAGKEVVVVGRSNIVGKPVAFMCL 178

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
           +++ATV++ HS+T++       AD++I+AVGQP M++G+WIK GAV+IDVG+N V + K 
Sbjct: 179 QQNATVTLCHSKTRDLAAKVAMADVVIAAVGQPEMIKGAWIKKGAVVIDVGVNRVGEKK- 237

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                LVGDV YE A   ASAITPVPGGVGPMTI MLL NTL SAKR
Sbjct: 238 -----LVGDVEYEAASARASAITPVPGGVGPMTITMLLYNTLESAKR 279

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Geobacter sp. (strain FRC-32) (taxid: 316067)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B4S820|FOLD_PROA2 Bifunctional protein FolD OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=folD PE=3 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/293 (51%), Positives = 202/293 (68%), Gaps = 4/293 (1%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK V+  +++E+   V  +K   G VPGL VI+VG+   S  YVRNK K+C+  G+N
Sbjct: 3   LIDGKKVSTDLKNELKTRVEELKAKAGCVPGLTVIIVGEDPASQVYVRNKAKSCKETGMN 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LP +T+++E+L  I   N DP VHGILVQ PLP HI+E ++  A+   KDVDGFH
Sbjct: 63  STVIELPAETTQEELLGKIEALNQDPDVHGILVQQPLPSHIEEYAVTMAIDPAKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQR 264
           P N+G++ +   +  FI CTP G +ELL RY  + +GK  VV+GRSNIVG P A L+LQ+
Sbjct: 123 PENVGQMVLGNLDKCFISCTPFGILELLRRYDIETRGKHCVVVGRSNIVGKPMANLMLQK 182

Query: 265 ---EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
               + TV++ HS T+N  E+TRQADI+I+A+G+ N +    +KPGAV+IDVGIN +ED 
Sbjct: 183 LRETNCTVTVCHSATQNMPELTRQADILIAAIGRANFITREMVKPGAVVIDVGINRIEDP 242

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
               G+RL GDV ++   E+ASAITPVPGGVGPMTIAMLL NTL S  R HN 
Sbjct: 243 SRKSGFRLAGDVDFDNVAEMASAITPVPGGVGPMTIAMLLKNTLQSFARSHNL 295

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Prosthecochloris aestuarii (strain DSM 271 / SK 413) (taxid: 290512)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A5GAM5|FOLD_GEOUR Bifunctional protein FolD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/287 (55%), Positives = 204/287 (71%), Gaps = 9/287 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           AK+IDGKA+A +IR EIT EV+++    GV PGLAV+LVG+   S  YV  K+KAC+ VG
Sbjct: 2   AKIIDGKAIAAKIRGEITAEVAKLASK-GVTPGLAVVLVGEDPASKVYVSMKEKACKDVG 60

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           I S E  LP DTSE ++L  I   N DP +HGIL+QLPLP  ID + +L A+S EKD DG
Sbjct: 61  IFSDEYKLPVDTSEADLLLLIHKLNSDPKIHGILIQLPLPKQIDTEKVLEAISPEKDADG 120

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP N+GRL +   +PLF PCTP G + +L   G ++ GK  VV+GRSNIVG P A +  
Sbjct: 121 FHPYNVGRLVI--GKPLFQPCTPYGVMVMLKEAGVELAGKEVVVVGRSNIVGKPVAFMCL 178

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
           +++ATV++ HS+T++       AD++I+AVGQP M++G+WIK GAV+IDVG+N V + K 
Sbjct: 179 QQNATVTLCHSKTRDLAAKVGMADVVIAAVGQPEMIKGAWIKEGAVVIDVGVNRVGEKK- 237

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                LVGDV ++ A E ASAITPVPGGVGPMTI MLL NTL +AKR
Sbjct: 238 -----LVGDVEFDAAAERASAITPVPGGVGPMTITMLLYNTLEAAKR 279

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Geobacter uraniireducens (strain Rf4) (taxid: 351605)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|O96553|C1TC_DROME C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4

 Score =  308 bits (789), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 161/292 (55%), Positives = 204/292 (69%), Gaps = 4/292 (1%)

Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRM-KDAIGVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           + AK+I G AVAK IR+E+  EV+ M K     VPGL ++ VG R+DS  Y+R K KA  
Sbjct: 36  SGAKIISGTAVAKSIREELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAAT 95

Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
            +GI++  V LP   +E E+L  I+  N+DP VHGI+VQ+PL C   ID   I +AVS E
Sbjct: 96  EIGIDAAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPE 155

Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
           KDVDG H +N GRLA+ G    F+PCTP GC+EL+ R G +I G RAVV+GRS IVG PA
Sbjct: 156 KDVDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPA 214

Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
           A LL+  +ATV++ HS+T+N EEITR ADI++  +G   MV+GSWIKPGAV+ID GIN  
Sbjct: 215 AELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVK 274

Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
            DA    G +LVGDV Y EA +VA  +TPVPGGVGPMT+AML+ NT+ SA R
Sbjct: 275 PDASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMKNTVRSAAR 326

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q2RIB4|FOLD_MOOTA Bifunctional protein FolD OS=Moorella thermoacetica (strain ATCC 39073) GN=folD PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/288 (56%), Positives = 209/288 (72%), Gaps = 11/288 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A+++DGK +A ++R E+  EVSR+K A G+ PGLAV+LVG+   S  YVRNK +AC+ VG
Sbjct: 3   AQILDGKKIAAEVRAEVKEEVSRLK-AEGINPGLAVVLVGEDPASQVYVRNKHRACEEVG 61

Query: 144 INSFEVH-LPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           I S EVH LP  TS+ E+LK I   N DP +HGILVQLPLP HIDE+ +++A+++EKDVD
Sbjct: 62  IYS-EVHRLPAATSQAELLKLIDQLNKDPKIHGILVQLPLPDHIDEKKVIDAIALEKDVD 120

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GF P N+G L +  +   F PCTP GC+ LL + G D KGK+AVV+GRSNIVG P A++L
Sbjct: 121 GFSPANVGNLVIGDK--CFYPCTPHGCMVLLEKAGIDPKGKKAVVVGRSNIVGKPVAMML 178

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
               ATV+I HSRT++     RQADI+I+AVG+P ++ G  IK GAV+IDVGIN V + K
Sbjct: 179 LARHATVTICHSRTRDLAAECRQADILIAAVGKPELITGDMIKEGAVVIDVGINRVGEKK 238

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                 LVGDV +E A + A  ITPVPGGVGPMTIAMLL NT+ +A+R
Sbjct: 239 ------LVGDVHFESAAQKAGWITPVPGGVGPMTIAMLLKNTVEAARR 280

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A7HSV9|FOLD_PARL1 Bifunctional protein FolD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1

 Score =  305 bits (781), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 202/289 (69%), Gaps = 3/289 (1%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A +IDGK +A ++R  +  EV+R+K    + PGLAV+LVG+   S  YVRNK  A    
Sbjct: 2   TATIIDGKIIATELRARVAVEVARLKKDHSLTPGLAVVLVGNDPASEVYVRNKGIATTEA 61

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G+NSFE  LP +TSE +VL  +   N DP+VHG LVQ P+P HI +Q++++A+   KD D
Sbjct: 62  GMNSFEFKLPAETSEADVLAKVRELNADPAVHGFLVQFPVPNHISQQAVIDAIDPVKDAD 121

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           G HPLN GRLA     P  +P TP+GC+ +  R G D+ GK AV+IGRSN+VG P A LL
Sbjct: 122 GLHPLNAGRLA--SGLPAMVPATPEGCVIMAKRAGGDLSGKHAVIIGRSNLVGKPVAQLL 179

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
            +E+ TV+I HSR+++   I RQADI+++AVG+P MVRG W+KPGAV+IDVGIN V   +
Sbjct: 180 LKENCTVTIAHSRSRDLPSIARQADILVAAVGRPGMVRGDWVKPGAVVIDVGINRVPAPE 239

Query: 323 SPRG-YRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
              G  RLVGDV ++EA EVA AITPVPGGVG MT+A LL NT+ +A R
Sbjct: 240 KGEGKTRLVGDVLFDEAAEVAGAITPVPGGVGLMTVACLLRNTVIAACR 288

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A1BF67|FOLD_CHLPD Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2

 Score =  305 bits (780), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/294 (51%), Positives = 206/294 (70%), Gaps = 4/294 (1%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           ++IDGK +++ +++E+  +V+  + +IG VPGL VI+VG    S  YVRNK K+C  +G+
Sbjct: 2   QIIDGKKISQDLKNELKTDVAHFQASIGKVPGLTVIIVGHDPASQVYVRNKAKSCLEIGM 61

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
           +S  + +P DT ++ +L+ I   N DP+VHGILVQ PLP  IDE ++  A+   KDVDGF
Sbjct: 62  HSTVIEMPHDTPQETLLQAIRELNQDPAVHGILVQQPLPKQIDEFAVTLAIDPSKDVDGF 121

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQ 263
           HP N+GRL M   +  F+ CTP G +ELL RY  + KGK  VV+GRSNIVG P A L++Q
Sbjct: 122 HPENLGRLVMGHLDKCFVSCTPYGILELLDRYNIETKGKHCVVVGRSNIVGKPMANLMMQ 181

Query: 264 REDA---TVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
           + DA   TV++ HS T++    T+QADI+I+A+G+   +    +KPGAV+IDVGIN +ED
Sbjct: 182 KLDATNCTVTVCHSATRDIPSFTKQADILIAALGKARFITADMVKPGAVVIDVGINRIED 241

Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
             +  GYRLVGDV Y+    +ASAITPVPGGVGPMTIAMLL NTL S +R++N 
Sbjct: 242 PSTKSGYRLVGDVDYDGVAALASAITPVPGGVGPMTIAMLLKNTLQSFRRINNL 295

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A4SER8|FOLD_PROVI Bifunctional protein FolD OS=Prosthecochloris vibrioformis (strain DSM 265) GN=folD PE=3 SV=1

 Score =  304 bits (778), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 153/293 (52%), Positives = 200/293 (68%), Gaps = 4/293 (1%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK V+ +++DE+   V R ++  G VPGL VI+VG+   S  YVRNK K C+ +G+N
Sbjct: 3   IIDGKKVSLELKDELKASVDRYRETTGKVPGLTVIIVGEDPASQVYVRNKAKTCKEIGMN 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + +P DT E+ +L  I+  N DP+VHGILVQ PLP  IDE ++  A+  +KDVDGFH
Sbjct: 63  SSVITMPADTPEEHLLDTIASLNLDPAVHGILVQQPLPEQIDEFAVTLAIDPQKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL---- 261
           P N+GRL M   +  F+ CTP G +ELL RYG +  GK  VV+GRSNIVG P A L    
Sbjct: 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRYGIETSGKHCVVVGRSNIVGKPMANLMLQK 182

Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
           L+R + TV+I HS T++    TRQADI+I+A+G+   +    +K GAV+IDVGIN ++D 
Sbjct: 183 LKRSNCTVTICHSATQDIASYTRQADILIAAIGRAKFITPDMVKEGAVVIDVGINRIDDP 242

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
            +  G RLVGDV YE    +ASA+TPVPGGVGPMTIAMLL NTL S +R HN 
Sbjct: 243 TTKSGTRLVGDVDYEGVSALASAMTPVPGGVGPMTIAMLLKNTLHSFERTHNL 295

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Prosthecochloris vibrioformis (strain DSM 265) (taxid: 290318)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
255586321	366	methylenetetrahydrofolate dehydrogenase,	0.96	0.983	0.791	1e-163
224067864	367	tetrahydrofolate dehydrogenase/cyclohydr	0.976	0.997	0.771	1e-161
449433091	363	PREDICTED: bifunctional protein FolD-lik	0.96	0.991	0.781	1e-160
15236888	360	Amino acid dehydrogenase family protein	0.954	0.994	0.767	1e-155
297810105	361	hypothetical protein ARALYDRAFT_490506 [	0.954	0.991	0.762	1e-153
225454113	389	PREDICTED: bifunctional protein FolD [Vi	0.981	0.946	0.734	1e-152
84468380	350	putative tetrahydrofolate synthase [Trif	0.893	0.957	0.793	1e-151
358248028	345	uncharacterized protein LOC100819231 [Gl	0.856	0.930	0.781	1e-149
363808352	342	uncharacterized protein LOC100797215 [Gl	0.850	0.932	0.784	1e-148
357507199	351	Bifunctional protein folD [Medicago trun	0.890	0.951	0.777	1e-145

>gi|255586321|ref|XP_002533811.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223526248|gb|EEF28564.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/374 (79%), Positives = 325/374 (86%), Gaps = 14/374 (3%)

Query: 6   SMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRT----TLTVHS 61
           S+ F DCSSS T RL  F R+      G++   RRL      + P S+RT    T+++ S
Sbjct: 3   SVTFTDCSSSATPRLRLFNRTATFHRNGSITFARRL------AGPLSVRTICFGTVSIGS 56

Query: 62  SPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVIL 121
           S + S PV+N    A+MASE  AKVIDGK VA +IR+EIT EVSRMKD IGVVPGLAVIL
Sbjct: 57  SSTASSPVIN----ASMASETGAKVIDGKLVAMKIREEITVEVSRMKDEIGVVPGLAVIL 112

Query: 122 VGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLP 181
           VGDRKDSATYVRNKKKAC SVGINSFE +LPED++EQEVLK IS FN DPSVHGILVQLP
Sbjct: 113 VGDRKDSATYVRNKKKACDSVGINSFEANLPEDSTEQEVLKFISGFNSDPSVHGILVQLP 172

Query: 182 LPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK 241
           LP H+++Q+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRYG +IK
Sbjct: 173 LPSHMNDQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYGVEIK 232

Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRG 301
           GKRAVVIGRSNIVGMPAAL+LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRG
Sbjct: 233 GKRAVVIGRSNIVGMPAALMLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRG 292

Query: 302 SWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLL 361
           +WIKPGAV+IDVGINPVEDAKSPRGYRLVGDVCYEEAC+VASA+TPVPGGVGPMTIAMLL
Sbjct: 293 NWIKPGAVVIDVGINPVEDAKSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLL 352

Query: 362 SNTLTSAKRVHNFQ 375
           SNTLTSAKRVHNFQ
Sbjct: 353 SNTLTSAKRVHNFQ 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067864|ref|XP_002302571.1| tetrahydrofolate dehydrogenase/cyclohydrolase [Populus trichocarpa] gi|222844297|gb|EEE81844.1| tetrahydrofolate dehydrogenase/cyclohydrolase [Populus trichocarpa]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 287/372 (77%), Positives = 320/372 (86%), Gaps = 6/372 (1%)

Query: 4   SRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSP 63
           S S++F D S+ST + L+PF R      G     R    + V P + + LRT L+V+SS 
Sbjct: 2   SSSLVFIDSSTSTASHLLPFSRISTPFNGAVSLRRSVGPLNVRPFVLSPLRT-LSVNSSN 60

Query: 64  SPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVG 123
           +PS PV+N         EASAKVIDGK VAKQIRDEIT EV +MK+AIGVVPGLAVILVG
Sbjct: 61  NPS-PVIN----DKSGGEASAKVIDGKMVAKQIRDEITAEVLKMKEAIGVVPGLAVILVG 115

Query: 124 DRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLP 183
           DRKDSATYVRNKKKAC+SVGINSFEV LPED++EQEV+K IS FN+DPSVHGILVQLPLP
Sbjct: 116 DRKDSATYVRNKKKACESVGINSFEVRLPEDSTEQEVIKFISEFNNDPSVHGILVQLPLP 175

Query: 184 CHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK 243
            H+DEQ++LNAV +EKDVDGFHPLNIGRLAMRGR+PLF+PCTPKGCIELLHRY  +IKGK
Sbjct: 176 SHMDEQNVLNAVDIEKDVDGFHPLNIGRLAMRGRDPLFVPCTPKGCIELLHRYDVEIKGK 235

Query: 244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSW 303
           RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI + ADIIISAVGQPNMVRGSW
Sbjct: 236 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIIKHADIIISAVGQPNMVRGSW 295

Query: 304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
           +KPGAV+IDVGINPVEDA SPRGY+LVGDVCYEEAC+VASA+TPVPGGVGPMTIAMLLSN
Sbjct: 296 LKPGAVVIDVGINPVEDANSPRGYKLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSN 355

Query: 364 TLTSAKRVHNFQ 375
           TL+SAKR HNFQ
Sbjct: 356 TLSSAKRTHNFQ 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433091|ref|XP_004134331.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus] gi|449480371|ref|XP_004155875.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/370 (78%), Positives = 319/370 (86%), Gaps = 10/370 (2%)

Query: 6   SMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSP 65
           SM F DCS STT RL P  R+RL    GA+   R L      S PA  RT   V  S + 
Sbjct: 4   SMKFTDCSPSTTVRLFPSARTRLPSFDGAVLFHRLLD----RSRPAFPRTF--VSRSSAS 57

Query: 66  SLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDR 125
           +LPV+    SA++++EA+A+VIDGK VAKQIR+EIT EVSRMKDAIGVVPGLAVILVGDR
Sbjct: 58  TLPVI----SASISTEATAEVIDGKLVAKQIREEITAEVSRMKDAIGVVPGLAVILVGDR 113

Query: 126 KDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH 185
           KDSATYVRNKKKAC+SVGI SFEV+LPED +EQEVLK+IS FNDDPSVHGILVQLPLP H
Sbjct: 114 KDSATYVRNKKKACESVGIKSFEVNLPEDCTEQEVLKYISDFNDDPSVHGILVQLPLPKH 173

Query: 186 IDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRA 245
           ++EQ+IL+AVS+EKDVDGFHPLNIGRLAMRG EPLF+PCTPKGCIELLHRY   IKGKRA
Sbjct: 174 MNEQNILHAVSIEKDVDGFHPLNIGRLAMRGEEPLFVPCTPKGCIELLHRYNIGIKGKRA 233

Query: 246 VVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIK 305
           VVIGRSNIVG PAALLLQ EDATVS+VHSRTK+PEE+TRQADIIISAVG+ NMV+GSWIK
Sbjct: 234 VVIGRSNIVGTPAALLLQGEDATVSVVHSRTKDPEELTRQADIIISAVGKANMVKGSWIK 293

Query: 306 PGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTL 365
           PGAVIIDVGINPVEDA SPRGYRLVGDVCYEEA ++ASAITPVPGGVGPMTIAMLLSNTL
Sbjct: 294 PGAVIIDVGINPVEDASSPRGYRLVGDVCYEEASKIASAITPVPGGVGPMTIAMLLSNTL 353

Query: 366 TSAKRVHNFQ 375
           T+AKR HNFQ
Sbjct: 354 TAAKRTHNFQ 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236888|ref|NP_191971.1| Amino acid dehydrogenase family protein [Arabidopsis thaliana] gi|3047116|gb|AAC13627.1| F6N23.26 gene product [Arabidopsis thaliana] gi|7267401|emb|CAB80871.1| putative tetrahydrofolate synthase [Arabidopsis thaliana] gi|16649149|gb|AAL24426.1| Unknown protein [Arabidopsis thaliana] gi|23197716|gb|AAN15385.1| Unknown protein [Arabidopsis thaliana] gi|332656510|gb|AEE81910.1| Amino acid dehydrogenase family protein [Arabidopsis thaliana]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/370 (76%), Positives = 310/370 (83%), Gaps = 12/370 (3%)

Query: 6   SMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSP 65
           SM+F DCSS+TT+RL+   RS      G    R+     VG      L+TT +       
Sbjct: 3   SMMFTDCSSTTTSRLIHLNRS-----SGTFLLRQ----CVGQ---LRLQTTASGRGCCIR 50

Query: 66  SLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDR 125
           S      S SA   SE  A VIDGKAVAK+IRDEIT EVSRMK++IGV+PGLAVILVGDR
Sbjct: 51  SSSSPISSISADTKSEGGAIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDR 110

Query: 126 KDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH 185
           KDSATYVRNKKKAC SVGI SFEV L ED+SE+EVLK +S FNDDPSVHGILVQLPLP H
Sbjct: 111 KDSATYVRNKKKACDSVGIKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSH 170

Query: 186 IDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRA 245
           +DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY  +IKGKRA
Sbjct: 171 MDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGKRA 230

Query: 246 VVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIK 305
           VVIGRSNIVGMPAALLLQREDATVSI+HSRTKNPEEITR+ADIIISAVGQPNMVRGSWIK
Sbjct: 231 VVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSWIK 290

Query: 306 PGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTL 365
           PGAV+IDVGINPVED  + RGYRLVGD+CYEEA +VASAITPVPGGVGPMTIAMLLSNTL
Sbjct: 291 PGAVLIDVGINPVEDPSAARGYRLVGDICYEEASKVASAITPVPGGVGPMTIAMLLSNTL 350

Query: 366 TSAKRVHNFQ 375
           TSAKR+HNFQ
Sbjct: 351 TSAKRIHNFQ 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810105|ref|XP_002872936.1| hypothetical protein ARALYDRAFT_490506 [Arabidopsis lyrata subsp. lyrata] gi|297318773|gb|EFH49195.1| hypothetical protein ARALYDRAFT_490506 [Arabidopsis lyrata subsp. lyrata]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/371 (76%), Positives = 311/371 (83%), Gaps = 13/371 (3%)

Query: 6   SMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSP 65
           S++F DCSSSTT+RL+   R       G    R+     VG      L+TT +       
Sbjct: 3   SLMFTDCSSSTTSRLIHLNRR-----SGTFLLRQ----CVGQ---LRLQTTASGRGCCIC 50

Query: 66  SLPVMNVSCSA-TMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGD 124
           S      + SA T +SE  A VIDGKAVAK+IRDEIT EVSRMK++IGV+PGLAVILVGD
Sbjct: 51  SSSSPISAISADTKSSEGVAIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGD 110

Query: 125 RKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPC 184
           RKDSATYVRNKKKAC SVGI SFEV L ED+SE+EVLK +S FN DPSVHGILVQLPLP 
Sbjct: 111 RKDSATYVRNKKKACDSVGIKSFEVCLAEDSSEEEVLKSVSAFNGDPSVHGILVQLPLPS 170

Query: 185 HIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR 244
           H+DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY  +IKGKR
Sbjct: 171 HMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGKR 230

Query: 245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWI 304
           AVVIGRSNIVGMPAALLLQREDATVSI+HSRTKNPEEITR+ADIII+AVGQPNMVRGSWI
Sbjct: 231 AVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREADIIIAAVGQPNMVRGSWI 290

Query: 305 KPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNT 364
           KPGAVIIDVGINPVED  + RGYRLVGD+CYEEAC+VASAITPVPGGVGPMTIAMLLSNT
Sbjct: 291 KPGAVIIDVGINPVEDPSAARGYRLVGDICYEEACKVASAITPVPGGVGPMTIAMLLSNT 350

Query: 365 LTSAKRVHNFQ 375
           LTSAKR+HNFQ
Sbjct: 351 LTSAKRIHNFQ 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454113|ref|XP_002269224.1| PREDICTED: bifunctional protein FolD [Vitis vinifera] gi|297745230|emb|CBI40310.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/388 (73%), Positives = 317/388 (81%), Gaps = 20/388 (5%)

Query: 6   SMIFADCSSSTTARLVPFGRSRLLCGGGALCAR--RRLHVGVGPSLPASLRTTLTVHSSP 63
           SM FADCS+S   R   F R R   G  ++     R L V  G  LP SLR T +  S P
Sbjct: 4   SMAFADCSTSAPTRTFLFSRLRPRRGLPSIPPHLLRGLPVA-GFRLP-SLRITNSPSSFP 61

Query: 64  S---------------PSLPVMNVSCS-ATMASEASAKVIDGKAVAKQIRDEITGEVSRM 107
                           P   + +VS S A +++EASA VIDGK++AK+IR EIT E+SRM
Sbjct: 62  KGNAFLRNKQGFRHFRPFTVLASVSASEAAISTEASAMVIDGKSIAKEIRHEITTEISRM 121

Query: 108 KDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVF 167
           KD IGV+PGLAVILVGDRKDS TYVRNKKKAC+SVGI S+EV LPED++E+EVLK IS F
Sbjct: 122 KDEIGVIPGLAVILVGDRKDSTTYVRNKKKACESVGIKSYEVCLPEDSTEEEVLKFISGF 181

Query: 168 NDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPK 227
           NDDP VHGILVQLPLP H++EQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPK
Sbjct: 182 NDDPEVHGILVQLPLPSHMNEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPK 241

Query: 228 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQAD 287
           GCIELLHR   DIKGK+AVVIGRSNIVGMPAALLL REDATVSIVHSRTKNPEE+T QAD
Sbjct: 242 GCIELLHRCNIDIKGKQAVVIGRSNIVGMPAALLLLREDATVSIVHSRTKNPEEVTSQAD 301

Query: 288 IIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITP 347
           III+AVGQPNMVRGSWIKPGAVIIDVGINPVEDA SPRGYRLVGDVCYEEAC++ASA+TP
Sbjct: 302 IIIAAVGQPNMVRGSWIKPGAVIIDVGINPVEDATSPRGYRLVGDVCYEEACKIASAVTP 361

Query: 348 VPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
           VPGGVGPMTIAMLLSNTL+SAKR+HNFQ
Sbjct: 362 VPGGVGPMTIAMLLSNTLSSAKRMHNFQ 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468380|dbj|BAE71273.1| putative tetrahydrofolate synthase [Trifolium pratense]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/343 (79%), Positives = 303/343 (88%), Gaps = 8/343 (2%)

Query: 34  ALCARRRLH-VGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAV 92
           AL  RR  H + VGP+   SLR  LT  S+P PS  +++ + SAT AS   AKVIDGK V
Sbjct: 15  ALLLRRTRHPIHVGPT---SLRF-LTSQSAP-PSSHLVSFAASATEAS--VAKVIDGKLV 67

Query: 93  AKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLP 152
           AKQIRDEI  EVSRMK+A+GV+PGLAVILVGDRKDSATYVRNKKKAC+SVGINS EV+LP
Sbjct: 68  AKQIRDEIAAEVSRMKEAVGVIPGLAVILVGDRKDSATYVRNKKKACESVGINSLEVNLP 127

Query: 153 EDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRL 212
            DT+E++VL +IS +NDDPSVHGILVQLPLP H++EQ++LNAV +EKDVDGFHPLNIGRL
Sbjct: 128 ADTTEEQVLNYISGYNDDPSVHGILVQLPLPSHMNEQNVLNAVRIEKDVDGFHPLNIGRL 187

Query: 213 AMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV 272
           AMRGREPLF+PCTPKGCIELLHRYG  IKGKRAVVIGRSNIVGMPAALLLQREDATVS+V
Sbjct: 188 AMRGREPLFVPCTPKGCIELLHRYGISIKGKRAVVIGRSNIVGMPAALLLQREDATVSVV 247

Query: 273 HSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGD 332
           HSRT NPEEITRQADIII+AVGQPNMVRGSWIKP AVIIDVGINPV+D  S RGY+LVGD
Sbjct: 248 HSRTSNPEEITRQADIIIAAVGQPNMVRGSWIKPDAVIIDVGINPVDDPSSSRGYKLVGD 307

Query: 333 VCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
           VCYEEA +VASAITPVPGGVGPMTIAMLL NTLTSAKR+++FQ
Sbjct: 308 VCYEEAIKVASAITPVPGGVGPMTIAMLLQNTLTSAKRINSFQ 350

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248028|ref|NP_001239795.1| uncharacterized protein LOC100819231 [Glycine max] gi|255648103|gb|ACU24506.1| unknown [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/338 (78%), Positives = 295/338 (87%), Gaps = 17/338 (5%)

Query: 40  RLH--VGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIR 97
           RLH  VG+GP       T+L   SS        +V+  A MA+++S KVIDGK+VAKQIR
Sbjct: 23  RLHRQVGLGP-------TSLGFSSS--------HVAPVAVMATDSSFKVIDGKSVAKQIR 67

Query: 98  DEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSE 157
           DEIT EVSRM+++IGV+PGLAVILVGDRKDSATYVRNKKKAC+SVGINS E +LPE+++E
Sbjct: 68  DEITAEVSRMRESIGVIPGLAVILVGDRKDSATYVRNKKKACESVGINSLEANLPENSTE 127

Query: 158 QEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGR 217
           +EVL +I+ +NDDPSVHGILVQLPLP H++EQ+ILNAV +EKDVDGFHPLNIGRLAMRGR
Sbjct: 128 EEVLNYIAGYNDDPSVHGILVQLPLPSHMNEQNILNAVRIEKDVDGFHPLNIGRLAMRGR 187

Query: 218 EPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK 277
           EPLF+PCTPKGCIELLHRY   IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT 
Sbjct: 188 EPLFVPCTPKGCIELLHRYNVSIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTS 247

Query: 278 NPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEE 337
           NPEEI RQADIII+AVGQ NMVRGSWIKPGAVIIDVGINPVED  SPRGY+LVGDVCYEE
Sbjct: 248 NPEEIIRQADIIIAAVGQANMVRGSWIKPGAVIIDVGINPVEDPNSPRGYKLVGDVCYEE 307

Query: 338 ACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
           A  +ASA+TPVPGGVGPMTIAMLL NTL SAKRVHNF+
Sbjct: 308 AIRIASAVTPVPGGVGPMTIAMLLQNTLISAKRVHNFE 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808352|ref|NP_001241997.1| uncharacterized protein LOC100797215 [Glycine max] gi|255641405|gb|ACU20979.1| unknown [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/334 (78%), Positives = 291/334 (87%), Gaps = 15/334 (4%)

Query: 42  HVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEIT 101
            VGVGP       T+L   SS        +V+  A MA ++SAKVIDGK+VAKQIRDEIT
Sbjct: 24  QVGVGP-------TSLRFSSS--------HVASVAAMAMDSSAKVIDGKSVAKQIRDEIT 68

Query: 102 GEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL 161
            EVSRM+++IGV+PGLAVILVGDRKDSATYVRNKKKAC+SVGINS E +LPED++E+EVL
Sbjct: 69  AEVSRMRESIGVIPGLAVILVGDRKDSATYVRNKKKACESVGINSLEANLPEDSTEEEVL 128

Query: 162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLF 221
            +I+ +NDDPSVHGILVQLPLP H++EQ+ILNAV +EKDVDGFHPLNIGRLAMRGREPLF
Sbjct: 129 NYIAGYNDDPSVHGILVQLPLPSHMNEQNILNAVRIEKDVDGFHPLNIGRLAMRGREPLF 188

Query: 222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEE 281
           +PCTPKGCIELLHRY   IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT NPEE
Sbjct: 189 VPCTPKGCIELLHRYNASIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTSNPEE 248

Query: 282 ITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV 341
           I RQADIII+AVGQ NMVRGSWIKPGAVIIDVGINPVED  SPRGY+LVGDVCYEEA  +
Sbjct: 249 IIRQADIIIAAVGQANMVRGSWIKPGAVIIDVGINPVEDPNSPRGYKLVGDVCYEEAIRI 308

Query: 342 ASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
           ASA+TPVPGGVGP TIAMLL NTL SAKRVH+F+
Sbjct: 309 ASAVTPVPGGVGPTTIAMLLQNTLISAKRVHHFE 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507199|ref|XP_003623888.1| Bifunctional protein folD [Medicago truncatula] gi|355498903|gb|AES80106.1| Bifunctional protein folD [Medicago truncatula]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/341 (77%), Positives = 297/341 (87%), Gaps = 7/341 (2%)

Query: 35  LCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAK 94
           L  RRR  + VGP+   SLR   T+HSS         +S +A+    +SAKVIDGK VAK
Sbjct: 18  LLLRRRHPINVGPT---SLRF-FTIHSS---PSSSRVLSIAASATEASSAKVIDGKTVAK 70

Query: 95  QIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED 154
           QIRDEI  EVSRM++A GV+PGLAVILVGDRKDSATYVRNKKKAC++VGINS EV+LPED
Sbjct: 71  QIRDEIAVEVSRMREAAGVIPGLAVILVGDRKDSATYVRNKKKACETVGINSLEVNLPED 130

Query: 155 TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAM 214
           ++E+EVL HI+ +NDDPSVHGILVQLPLP H++EQ++LNAV +EKDVDGFHPLNIGRLAM
Sbjct: 131 STEEEVLNHIAGYNDDPSVHGILVQLPLPSHMNEQNVLNAVRIEKDVDGFHPLNIGRLAM 190

Query: 215 RGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 274
           RGREPLF+PCTPKGCIELLHRYG  IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS
Sbjct: 191 RGREPLFVPCTPKGCIELLHRYGVSIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 250

Query: 275 RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVC 334
           RT NPEEI RQADIII+AVGQPNMV+GSWIKPGAVIIDVGINPV+D  S RGY+LVGDVC
Sbjct: 251 RTTNPEEIIRQADIIIAAVGQPNMVKGSWIKPGAVIIDVGINPVDDPSSSRGYKLVGDVC 310

Query: 335 YEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
           YEEA +VASAITPVPGGVGPMTIAMLL NTL SAKR+H+F+
Sbjct: 311 YEEAVKVASAITPVPGGVGPMTIAMLLQNTLISAKRIHSFE 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2127113	360	EMB3127 "EMBRYO DEFECTIVE 3127	0.949	0.988	0.766	1.4e-142
TAIR|locus:2127083	310	AT4G00600 [Arabidopsis thalian	0.68	0.822	0.768	7.2e-107
TAIR|locus:2064143	352	AT2G38660 [Arabidopsis thalian	0.824	0.877	0.637	3.2e-104
TAIR|locus:2082254	299	AT3G12290 [Arabidopsis thalian	0.781	0.979	0.634	3.1e-99
DICTYBASE|DDB_G0283121	292	DDB_G0283121 "methenyl tetrahy	0.746	0.958	0.566	9.4e-82
FB|FBgn0020385	968	pug "pugilist" [Drosophila mel	0.768	0.297	0.551	1.7e-80
ASPGD|ASPL0000036964	1031	AN2998 [Emericella nidulans (t	0.810	0.294	0.513	4.1e-79
POMBASE|SPBC839.16	937	SPBC839.16 "C1-5,6,7,8-tetrahy	0.765	0.306	0.506	2.5e-77
UNIPROTKB|F5H2F4	1020	MTHFD1 "C-1-tetrahydrofolate s	0.909	0.334	0.450	5.2e-77
UNIPROTKB|F1PYV1	983	MTHFD1 "Uncharacterized protei	0.813	0.310	0.477	8.5e-77

TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 285/372 (76%), Positives = 314/372 (84%)

Query:     6 SMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSS--P 63
             SM+F DCSS+TT+RL+   RS      G    R+     VG      L+TT +       
Sbjct:     3 SMMFTDCSSTTTSRLIHLNRS-----SGTFLLRQC----VGQ---LRLQTTASGRGCCIR 50

Query:    64 SPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVG 123
             S S P+ ++S  A   SE  A VIDGKAVAK+IRDEIT EVSRMK++IGV+PGLAVILVG
Sbjct:    51 SSSSPISSIS--ADTKSEGGAIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVG 108

Query:   124 DRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLP 183
             DRKDSATYVRNKKKAC SVGI SFEV L ED+SE+EVLK +S FNDDPSVHGILVQLPLP
Sbjct:   109 DRKDSATYVRNKKKACDSVGIKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLP 168

Query:   184 CHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK 243
              H+DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY  +IKGK
Sbjct:   169 SHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGK 228

Query:   244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSW 303
             RAVVIGRSNIVGMPAALLLQREDATVSI+HSRTKNPEEITR+ADIIISAVGQPNMVRGSW
Sbjct:   229 RAVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSW 288

Query:   304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
             IKPGAV+IDVGINPVED  + RGYRLVGD+CYEEA +VASAITPVPGGVGPMTIAMLLSN
Sbjct:   289 IKPGAVLIDVGINPVEDPSAARGYRLVGDICYEEASKVASAITPVPGGVGPMTIAMLLSN 348

Query:   364 TLTSAKRVHNFQ 375
             TLTSAKR+HNFQ
Sbjct:   349 TLTSAKRIHNFQ 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2127083 AT4G00600 [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
 Identities = 196/255 (76%), Positives = 220/255 (86%)

Query:   121 LVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQL 180
             +V D K  A  +R+  K   S    S  V   ED+SE+EVLK++S FNDDPSVHG+LVQL
Sbjct:    56 IVIDGKAEAKKIRDDIKIEVSRMKESIGVVPAEDSSEEEVLKYVSGFNDDPSVHGVLVQL 115

Query:   181 PLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDI 240
             PLP H+DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY  + 
Sbjct:   116 PLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEF 175

Query:   241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVR 300
             KGKRAVVIGRSNIVGMPAALLLQ+EDATVSI+HSRT NPEE+TRQADI+ISAVG+PNMVR
Sbjct:   176 KGKRAVVIGRSNIVGMPAALLLQKEDATVSIIHSRTMNPEELTRQADILISAVGKPNMVR 235

Query:   301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAML 360
             GSWIKPGAV+IDVGI PVED  +  G RLVGD+CY EA ++ASAITPVPG VGPMTIAML
Sbjct:   236 GSWIKPGAVLIDVGIKPVEDPSAAGGERLVGDICYVEASKIASAITPVPGDVGPMTIAML 295

Query:   361 LSNTLTSAKRVHNFQ 375
             LSNTLTSAKR+HNFQ
Sbjct:   296 LSNTLTSAKRIHNFQ 310

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 197/309 (63%), Positives = 239/309 (77%)

Query:    63 PSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILV 122
             P   +P  +     +  +E    VIDG  +A++IR +I  EV +MK A+G VPGLAV+LV
Sbjct:    42 PENWIPYSDPPPPVSFETEQKTVVIDGNVIAEEIRTKIISEVGKMKKAVGKVPGLAVVLV 101

Query:   123 GDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL 182
             G+++DS TYVRNK KAC+  GI S    LPED +E +++  +  FN+D S+HGILVQLPL
Sbjct:   102 GEQRDSQTYVRNKIKACEETGIKSVLAELPEDCTEGQIISVLRKFNEDTSIHGILVQLPL 161

Query:   183 PCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG 242
             P H++E  ILN V +EKDVDGFHPLN+G LAMRGREPLF+ CTPKGC+ELL R G +I G
Sbjct:   162 PQHLNESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRTGVEIAG 221

Query:   243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS 302
             K AVVIGRSNIVG+P +LLLQR DATVS VH+ TK+PE ITR+ADI+I+A G PN+VRGS
Sbjct:   222 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEHITRKADIVIAAAGIPNLVRGS 281

Query:   303 WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLS 362
             W+KPGAV+IDVG  PVED+    GYRLVGDVCYEEA  VASAITPVPGGVGPMTI MLL 
Sbjct:   282 WLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLC 341

Query:   363 NTLTSAKRV 371
             NTL +AKR+
Sbjct:   342 NTLEAAKRI 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 186/293 (63%), Positives = 231/293 (78%)

Query:    79 ASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKA 138
             +S+ +AK+IDGKA+A  IR EI  EV  + +  G VPGLAV++VG RKDS TYV  K+KA
Sbjct:     4 SSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKRKA 63

Query:   139 CQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSME 198
             C  VGI SF+V LPE+ SE +++  +   N +P VHGILVQLPLP HI+E+ IL A+S++
Sbjct:    64 CAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAISID 123

Query:   199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
             KDVDGFHPLNIG+LAM+GREPLF+PCTPKGC+ELL R G  IKG+RAVV+GRSNIVG+P 
Sbjct:   124 KDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVGLPV 183

Query:   259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
             +LLL + DATV+ VHS TK+PE I R+ADI+I+A GQ +M++G+WIKPGA +IDVG N V
Sbjct:   184 SLLLLKADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGTNAV 243

Query:   319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
              D     GYRLVGDV + EA +VA  ITPVPGGVGPMT+AMLL NT+  AKRV
Sbjct:   244 SDPSKKSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRV 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 162/286 (56%), Positives = 209/286 (73%)

Query:    85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
             K+IDGK ++ Q+++ I  E++ MK+     P L VILVGDRKDS TYVRNKKK    +GI
Sbjct:     9 KIIDGKEISSQVKESIKDEITLMKEKGLRAPCLVVILVGDRKDSQTYVRNKKKTASDLGI 68

Query:   145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
             NS ++ LPE T++QE++  +  ++    V GILVQLPLP HI+E+ IL  +   KDVDGF
Sbjct:    69 NSIDILLPEQTTQQELIDLVQSYSKKDDVDGILVQLPLPSHINEEIILTQIDESKDVDGF 128

Query:   205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
             HP+NIG+LAMRGR+  F PCTPKGCIE+L R G +I GK AVV+GRSNIVG+P ++LL  
Sbjct:   129 HPVNIGKLAMRGRKADFEPCTPKGCIEMLDRSGIEIAGKNAVVLGRSNIVGLPVSMLLLS 188

Query:   265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
              DATV+I HS+T N +E  R+ADI++ A+G+  +V+  W+K GAV+IDVG+N  E+ K  
Sbjct:   189 RDATVTICHSKTPNLKEKCREADILVVAIGKAKLVKKDWVKTGAVVIDVGMNTDENNK-- 246

Query:   325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                 L GDV Y E  EVAS ITPVPGGVGPMTIAML+ NTL SAK+
Sbjct:   247 ----LCGDVDYNEVKEVASYITPVPGGVGPMTIAMLMKNTLESAKK 288

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0020385 pug "pugilist" [Drosophila melanogaster (taxid:7227)]

 Score = 785 (281.4 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 161/292 (55%), Positives = 204/292 (69%)

Query:    82 ASAKVIDGKAVAKQIRDEITGEVSRM-KDAIGVVPGLAVILVGDRKDSATYVRNKKKACQ 140
             + AK+I G AVAK IR+E+  EV+ M K     VPGL ++ VG R+DS  Y+R K KA  
Sbjct:    36 SGAKIISGTAVAKSIREELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAAT 95

Query:   141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
              +GI++  V LP   +E E+L  I+  N+DP VHGI+VQ+PL C   ID   I +AVS E
Sbjct:    96 EIGIDAAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPE 155

Query:   199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
             KDVDG H +N GRLA+ G    F+PCTP GC+EL+ R G +I G RAVV+GRS IVG PA
Sbjct:   156 KDVDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPA 214

Query:   259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
             A LL+  +ATV++ HS+T+N EEITR ADI++  +G   MV+GSWIKPGAV+ID GIN  
Sbjct:   215 AELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVK 274

Query:   319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
              DA    G +LVGDV Y EA +VA  +TPVPGGVGPMT+AML+ NT+ SA R
Sbjct:   275 PDASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMKNTVRSAAR 326

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=ISS;IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS;IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

ASPGD|ASPL0000036964 AN2998 [Emericella nidulans (taxid:162425)]

 Score = 773 (277.2 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
 Identities = 157/306 (51%), Positives = 207/306 (67%)

Query:    65 PSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIG-VVPGLAVILVG 123
             P+LP    + S+T  +  + K IDG  +AK IR  +  E+ ++++      P L +  VG
Sbjct:    77 PALPCQRRTFSSTGVAMVAEK-IDGTQIAKDIRAGLKDEIQKIQEINPRFKPSLVIFQVG 135

Query:   124 DRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLP 183
             DR DS+TYVR K KA +   I    V+ PE  ++ E+L+ IS  N+DPSVHGILVQLPLP
Sbjct:   136 DRSDSSTYVRMKLKAAEEANILCKIVNFPESITQPEILQEISQANNDPSVHGILVQLPLP 195

Query:   184 CHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK 243
              H+ E ++ +AV+ EKDVDGF  +NIG LA RG  PLF+PCTPK  + LL   G D  GK
Sbjct:   196 QHLSEHAVTSAVADEKDVDGFGAINIGELAKRGGRPLFVPCTPKAVMVLLKASGVDPAGK 255

Query:   244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSW 303
              AVV+GRS+IVG P + LL+  DATV++ HS+T +     ++ADI+++A+G+   V+G W
Sbjct:   256 EAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIASAVKKADIVVAAIGKTEFVKGDW 315

Query:   304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
             IKPGAV+IDVGIN   D+    G RLVGDV YE A +VAS ITPVPGGVGPMT+AMLL N
Sbjct:   316 IKPGAVVIDVGINYKPDSTKKSGQRLVGDVEYESASQVASKITPVPGGVGPMTVAMLLEN 375

Query:   364 TLTSAK 369
              + SAK
Sbjct:   376 VVASAK 381

GO:0006730 "one-carbon metabolic process" evidence=IEA;RCA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;RCA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;RCA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;RCA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

POMBASE|SPBC839.16 SPBC839.16 "C1-5,6,7,8-tetrahydrofolate (THF) synthase, trifunctional enzyme" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 753 (270.1 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
 Identities = 146/288 (50%), Positives = 203/288 (70%)

Query:    84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVP-GLAVILVGDRKDSATYVRNKKKACQSV 142
             A +++G ++A+++R+E+  ++S +K         L +I VG R+DS  YVR K +A    
Sbjct:     2 ALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANEA 61

Query:   143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
             GI+   V+ PED +E ++L  I  FN+DP+VHGI+VQLPLP HI+EQ I  AV+ EKDVD
Sbjct:    62 GISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINEQIITEAVAPEKDVD 121

Query:   203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
             GF   N+G+L  R  +PLF  CTPKG + +L  YG +++GK AVVIGRSNIVG P ++LL
Sbjct:   122 GFCETNLGKLTKREGQPLFTACTPKGIMCILKHYGINVQGKHAVVIGRSNIVGRPMSILL 181

Query:   263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
             ++ +ATV++ HS+T++  +I R ADI+++A+G P+ V+  W+K G V IDVGIN + DA 
Sbjct:   182 EKANATVTLCHSKTESIADIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGINSIPDAT 241

Query:   323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                GYRL GD+ +E A EVASAITPVPG VGPMT+AMLL N + SA R
Sbjct:   242 KKSGYRLTGDIDFENAKEVASAITPVPGSVGPMTVAMLLQNVVESAVR 289

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IDA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IDA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IDA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IDA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IDA

GO:0046656 "folic acid biosynthetic process" evidence=IDA

UNIPROTKB|F5H2F4 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 755 (270.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
 Identities = 156/346 (45%), Positives = 225/346 (65%)

Query:    29 LCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPS-PSLPVMNVSCSATMASEASAKVI 87
             +C G +   RRR  V   P +P  +   + +    S  S+ V+++  S  + + A A+++
Sbjct:     5 VCRGRSGQGRRRSSVIPWP-VPKHVGWVVLLGCGGSGTSILVVSIVGSGLIKAMAPAEIL 63

Query:    88 DGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINS 146
             +GK ++ QIR  +  +V+++K+ + G  P LA++ VG+R DS  Y+  K KA + +GI +
Sbjct:    64 NGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKA 123

Query:   147 FEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSMEKDVDGF 204
               + LP  T+E EV+K+I+  N+D +VHG LVQLPL     I+ + ++NA++ EKDVDG 
Sbjct:   124 THIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGL 183

Query:   205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
               +N G+LA       FIPCTPKGC+EL+   G  I G+ AVV+GRS IVG P   LL  
Sbjct:   184 TSINAGKLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLW 243

Query:   265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
              +ATV+  HS+T + +E   + DI++ A GQP MV+G WIKPGA++ID GIN V D K P
Sbjct:   244 NNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKP 303

Query:   325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
              G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct:   304 NGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 349

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1PYV1 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 753 (270.1 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 147/308 (47%), Positives = 209/308 (67%)

Query:    66 SLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGD 124
             S+ V+++  S  + + A A++++GK V+ QIR+ +  EV++MK+ + G +PGLA++ VGD
Sbjct:     4 SVLVVSIVGSGLIKAMAPAEILNGKVVSAQIRERLKNEVTQMKEQVPGFIPGLAILQVGD 63

Query:   125 RKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPC 184
             R DS  Y+  K KA + +GI +  + LP+  +E EVLK+++  N+D +VHG +VQLPL  
Sbjct:    64 RDDSNLYINVKLKAAEEIGIRATHIKLPKTATESEVLKYVTSLNEDLTVHGFIVQLPLDS 123

Query:   185 H--IDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG 242
                I+ ++++NA+  EKDVDG   ++ G+LA    +  FIPCTPKGC+EL+   G  I G
Sbjct:   124 ENPINTEAVINAIVPEKDVDGLTSISAGKLARGDLKDCFIPCTPKGCLELIKETGVQIAG 183

Query:   243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS 302
             + AVV+GRS IVG P   LL    ATV+  HS+T N  E   + DI++ A GQP MV+G 
Sbjct:   184 RHAVVVGRSKIVGAPMHDLLLWNHATVTTCHSKTANLSEEVNKGDILVVATGQPEMVKGE 243

Query:   303 WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLS 362
             WIKPGA++ID GIN + D   P G ++VGDV Y EA E A  ITPVPGGVGPMT+AML+ 
Sbjct:   244 WIKPGAIVIDCGINYIPDDTKPNGRKVVGDVAYNEAKERAGFITPVPGGVGPMTVAMLMQ 303

Query:   363 NTLTSAKR 370
             +T+ SAKR
Sbjct:   304 STVESAKR 311

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3ECA6	FOLD_CHLL2	3, ., 5, ., 4, ., 9	0.5238	0.7733	0.9797	yes	no
Q71ZW2	FOLD_LISMF	3, ., 5, ., 4, ., 9	0.5085	0.752	0.9929	yes	no
A6UB98	FOLD2_SINMW	3, ., 5, ., 4, ., 9	0.5392	0.7573	0.9562	yes	no
C0ZC05	FOLD_BREBN	3, ., 5, ., 4, ., 9	0.5277	0.744	0.9823	yes	no
A4SER8	FOLD_PROVI	3, ., 5, ., 4, ., 9	0.5221	0.7706	0.9796	yes	no
B7KEP3	FOLD_CYAP7	3, ., 5, ., 4, ., 9	0.5221	0.768	0.9568	yes	no
B8DFW8	FOLD_LISMH	3, ., 5, ., 4, ., 9	0.5051	0.752	0.9929	yes	no
A2RLU5	FOLD_LACLM	3, ., 5, ., 4, ., 9	0.5347	0.744	0.9789	yes	no
Q1GE28	FOLD_RUEST	3, ., 5, ., 4, ., 9	0.5290	0.7733	0.9666	yes	no
A5GAM5	FOLD_GEOUR	3, ., 5, ., 4, ., 9	0.5505	0.7413	0.9928	yes	no
C1L2R6	FOLD_LISMC	3, ., 5, ., 4, ., 9	0.5085	0.752	0.9929	yes	no
Q8Y7C5	FOLD_LISMO	3, ., 5, ., 4, ., 9	0.5087	0.7413	0.9788	yes	no
Q92BZ4	FOLD_LISIN	3, ., 5, ., 4, ., 9	0.5191	0.7413	0.9788	yes	no
A7HSV9	FOLD_PARL1	3, ., 5, ., 4, ., 9	0.5328	0.7626	0.9597	yes	no
B4S820	FOLD_PROA2	3, ., 5, ., 4, ., 9	0.5187	0.7706	0.9796	yes	no
B9M769	FOLD_GEOSF	3, ., 5, ., 4, ., 9	0.5540	0.7413	0.9928	yes	no
A3DEE6	FOLD_CLOTH	3, ., 5, ., 4, ., 9	0.5400	0.7413	0.9754	yes	no
Q31Q60	FOLD_SYNE7	3, ., 5, ., 4, ., 9	0.5486	0.7466	0.9688	yes	no
A1B5A7	FOLD1_PARDP	3, ., 5, ., 4, ., 9	0.5257	0.7626	0.9597	yes	no
Q5N421	FOLD_SYNP6	3, ., 5, ., 4, ., 9	0.5486	0.7466	0.9688	yes	no
B2A532	FOLD_NATTJ	3, ., 5, ., 4, ., 9	0.5392	0.7546	0.9964	yes	no
Q39WH4	FOLD2_GEOMG	3, ., 5, ., 4, ., 9	0.5298	0.736	0.9684	yes	no
B4RE11	FOLD_PHEZH	3, ., 5, ., 4, ., 9	0.5084	0.776	0.9797	yes	no
Q5LNV2	FOLD1_RUEPO	3, ., 5, ., 4, ., 9	0.5324	0.7626	0.9662	yes	no
A1BBS1	FOLD2_PARDP	3, ., 5, ., 4, ., 9	0.5185	0.7786	0.9668	yes	no
Q5NP22	FOLD_ZYMMO	3, ., 5, ., 4, ., 9	0.5410	0.7626	0.9629	yes	no
Q2G338	FOLD_NOVAD	3, ., 5, ., 4, ., 9	0.5486	0.76	0.9595	yes	no
Q9K966	FOLD_BACHD	3, ., 5, ., 4, ., 9	0.5347	0.7413	0.9964	yes	no
Q3ASI0	FOLD_CHLCH	3, ., 5, ., 4, ., 9	0.5290	0.7706	0.9796	yes	no
B3EJG9	FOLD_CHLPB	3, ., 5, ., 4, ., 9	0.5442	0.7733	0.9731	yes	no
B3QUL4	FOLD_CHLT3	3, ., 5, ., 4, ., 9	0.5139	0.752	0.9591	yes	no
Q030A3	FOLD_LACLS	3, ., 5, ., 4, ., 9	0.5347	0.744	0.9789	yes	no
A8I5P5	FOLD_AZOC5	3, ., 5, ., 4, ., 9	0.5625	0.7466	0.9655	yes	no
A5EX57	FOLD_DICNV	3, ., 5, ., 4, ., 9	0.5376	0.7626	0.9828	yes	no
A0LE04	FOLD_MAGSM	3, ., 5, ., 4, ., 9	0.5841	0.7546	0.9929	yes	no
Q2N7E3	FOLD_ERYLH	3, ., 5, ., 4, ., 9	0.5482	0.7573	0.9530	yes	no
B4SGR4	FOLD_PELPB	3, ., 5, ., 4, ., 9	0.5187	0.7706	0.9796	yes	no
Q73RS2	FOLD_TREDE	3, ., 5, ., 4, ., 9	0.5152	0.7733	0.9897	yes	no
B2UM17	FOLD_AKKM8	3, ., 5, ., 4, ., 9	0.5104	0.7573	0.9759	yes	no
Q2RIB4	FOLD_MOOTA	3, ., 5, ., 4, ., 9	0.5625	0.7386	0.9892	yes	no
Q97RI9	FOLD_STRPN	3, ., 5, ., 4, ., 9	0.5069	0.7413	0.9754	yes	no
A1BF67	FOLD_CHLPD	3, ., 5, ., 4, ., 9	0.5102	0.7733	0.9830	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4.9	0.914
3rd Layer	3.5.4	0.921
3rd Layer	1.5.1	0.921
4th Layer	1.5.1.5	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
PLN02616	364	PLN02616, PLN02616, tetrahydrofolate dehydrogenase	0.0
PLN02897	345	PLN02897, PLN02897, tetrahydrofolate dehydrogenase	1e-162
PLN02516	299	PLN02516, PLN02516, methylenetetrahydrofolate dehy	1e-152
COG0190	283	COG0190, FolD, 5,10-methylene-tetrahydrofolate deh	1e-148
PRK14190	284	PRK14190, PRK14190, bifunctional 5,10-methylene-te	1e-140
PRK14188	296	PRK14188, PRK14188, bifunctional 5,10-methylene-te	1e-139
PRK10792	285	PRK10792, PRK10792, bifunctional 5,10-methylene-te	1e-130
PRK14186	297	PRK14186, PRK14186, bifunctional 5,10-methylene-te	1e-124
PRK14189	285	PRK14189, PRK14189, bifunctional 5,10-methylene-te	1e-124
PRK14174	295	PRK14174, PRK14174, bifunctional 5,10-methylene-te	1e-121
PRK14179	284	PRK14179, PRK14179, bifunctional 5,10-methylene-te	1e-120
PRK14191	285	PRK14191, PRK14191, bifunctional 5,10-methylene-te	1e-116
PRK14167	297	PRK14167, PRK14167, bifunctional 5,10-methylene-te	1e-108
PRK14194	301	PRK14194, PRK14194, bifunctional 5,10-methylene-te	1e-107
PRK14184	286	PRK14184, PRK14184, bifunctional 5,10-methylene-te	1e-107
PRK14183	281	PRK14183, PRK14183, bifunctional 5,10-methylene-te	1e-105
PRK14168	297	PRK14168, PRK14168, bifunctional 5,10-methylene-te	1e-104
PRK14175	286	PRK14175, PRK14175, bifunctional 5,10-methylene-te	1e-104
PRK14187	294	PRK14187, PRK14187, bifunctional 5,10-methylene-te	1e-104
PRK14185	293	PRK14185, PRK14185, bifunctional 5,10-methylene-te	1e-103
PRK14176	287	PRK14176, PRK14176, bifunctional 5,10-methylene-te	1e-103
PRK14193	284	PRK14193, PRK14193, bifunctional 5,10-methylene-te	1e-102
PRK14170	284	PRK14170, PRK14170, bifunctional 5,10-methylene-te	2e-98
PRK14178	279	PRK14178, PRK14178, bifunctional 5,10-methylene-te	1e-96
cd01080	168	cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding	1e-96
PRK14192	283	PRK14192, PRK14192, bifunctional 5,10-methylene-te	2e-96
PRK14166	282	PRK14166, PRK14166, bifunctional 5,10-methylene-te	8e-96
pfam02882	160	pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro	2e-95
PRK14173	287	PRK14173, PRK14173, bifunctional 5,10-methylene-te	4e-95
PRK14172	278	PRK14172, PRK14172, bifunctional 5,10-methylene-te	1e-94
PRK14182	282	PRK14182, PRK14182, bifunctional 5,10-methylene-te	1e-91
PRK14169	282	PRK14169, PRK14169, bifunctional 5,10-methylene-te	1e-91
PRK14180	282	PRK14180, PRK14180, bifunctional 5,10-methylene-te	6e-88
PRK14181	287	PRK14181, PRK14181, bifunctional 5,10-methylene-te	4e-87
PRK14171	288	PRK14171, PRK14171, bifunctional 5,10-methylene-te	6e-84
PRK14177	284	PRK14177, PRK14177, bifunctional 5,10-methylene-te	4e-83
pfam00763	117	pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydroge	1e-54
cd05212	140	cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) b	4e-34
cd01079	197	cd01079, NAD_bind_m-THF_DH, NAD binding domain of	6e-17
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	3e-06
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	0.002
cd05305	359	cd05305, L-AlaDH, Alanine dehydrogenase NAD-bindin	0.004

>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  612 bits (1580), Expect = 0.0
 Identities = 297/372 (79%), Positives = 321/372 (86%), Gaps = 8/372 (2%)

Query: 4   SRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSP 63
             S++F DCSSSTT+RL+ F R      G  L   RR  VG       +      ++SS 
Sbjct: 1   MASLMFTDCSSSTTSRLIHFNRISTPFNGTFLL--RRC-VGPLRVRTTASGRGCCINSSS 57

Query: 64  SPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVG 123
           SPS PV+N    A   SE  AKVIDGKAVAK+IRDEIT EVSRMK++IGVVPGLAVILVG
Sbjct: 58  SPS-PVIN----ADTGSEGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVG 112

Query: 124 DRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLP 183
           DRKDSATYVRNKKKAC SVGINSFEV LPED++EQEVLK IS FN+DPSVHGILVQLPLP
Sbjct: 113 DRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLP 172

Query: 184 CHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK 243
            H+DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY  +IKGK
Sbjct: 173 SHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGK 232

Query: 244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSW 303
           RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITR+ADIIISAVGQPNMVRGSW
Sbjct: 233 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSW 292

Query: 304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
           IKPGAV+IDVGINPVEDA SPRGYRLVGDVCYEEAC+VASA+TPVPGGVGPMTIAMLLSN
Sbjct: 293 IKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSN 352

Query: 364 TLTSAKRVHNFQ 375
           TLTSAKR+HNFQ
Sbjct: 353 TLTSAKRIHNFQ 364

Length = 364

>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  458 bits (1179), Expect = e-162
 Identities = 199/311 (63%), Positives = 239/311 (76%)

Query: 63  PSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILV 122
           P   +P  +     +  +E    VIDG  +A++IR +I  EV +MK A+G VPGLAV+LV
Sbjct: 35  PENWIPYSDPPPPVSFETEQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLV 94

Query: 123 GDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL 182
           G ++DS TYVRNK KAC+  GI S    LPED +E ++L  +  FN+D S+HGILVQLPL
Sbjct: 95  GQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPL 154

Query: 183 PCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG 242
           P H+DE  ILN V +EKDVDGFHPLN+G LAMRGREPLF+ CTPKGC+ELL R G +I G
Sbjct: 155 PQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAG 214

Query: 243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS 302
           K AVVIGRSNIVG+P +LLLQR DATVS VH+ TK+PE+ITR+ADI+I+A G PN+VRGS
Sbjct: 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGS 274

Query: 303 WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLS 362
           W+KPGAV+IDVG  PVED+    GYRLVGDVCYEEA  VASAITPVPGGVGPMTI MLL 
Sbjct: 275 WLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLC 334

Query: 363 NTLTSAKRVHN 373
           NTL +AKR+  
Sbjct: 335 NTLDAAKRIFL 345

Length = 345

>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+)

 Score =  430 bits (1106), Expect = e-152
 Identities = 187/292 (64%), Positives = 230/292 (78%)

Query: 80  SEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKAC 139
           S+  A++IDGKA+AK IR EI  EV+++ +  G VPGLAV++VG RKDS TYV  K+KAC
Sbjct: 5   SDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKAC 64

Query: 140 QSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEK 199
             VGI SF+V LPE+ SE E++  +   N +P VHGILVQLPLP HI+E+ ILN +S+EK
Sbjct: 65  AEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEK 124

Query: 200 DVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA 259
           DVDGFHPLNIG+LAM+GREPLF+PCTPKGC+ELL R G  IKGK+AVV+GRSNIVG+P +
Sbjct: 125 DVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVS 184

Query: 260 LLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
           LLL + DATV++VHSRT +PE I R+ADI+I+A GQ  M++G WIKPGA +IDVG N V 
Sbjct: 185 LLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS 244

Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
           D     GYRLVGDV + E  +VA  ITPVPGGVGPMT+AMLL NT+  AKRV
Sbjct: 245 DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRV 296

Length = 299

>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

 Score =  419 bits (1079), Expect = e-148
 Identities = 162/289 (56%), Positives = 205/289 (70%), Gaps = 8/289 (2%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
            +IDGKA+A++IR+E+  +V  +K   G  PGLAVILVGD   S  YVR+KKKA + +GI
Sbjct: 1   MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
            S    LPED +E+E+L  I   N DP V GILVQLPLP H+DEQ +L A+  EKDVDGF
Sbjct: 61  ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
           HP N+G+LA    EP F+PCTP G + LL  YG D++GK  VV+GRSNIVG P ALLL  
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
            +ATV++ HSRTK+   IT+ ADI++ AVG+P+ ++   +KPGAV+IDVGIN V D    
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
              +LVGDV ++   E ASAITPVPGGVGPMT+AMLL NTL +A+R   
Sbjct: 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281

Length = 283

>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  398 bits (1025), Expect = e-140
 Identities = 155/290 (53%), Positives = 202/290 (69%), Gaps = 9/290 (3%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
            A +IDGK VAK+ R+++  EV ++K+  G+VPGLAVILVGD   S +YVR KKKA + V
Sbjct: 2   MAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKV 60

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           GI S     P D +E+E+L  I   N DP ++GILVQLPLP HIDE++++  +S EKDVD
Sbjct: 61  GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVD 120

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP+N+GR+ +   +  F+PCTP G +ELL  Y  DI GK  VV+GRSNIVG P   LL
Sbjct: 121 GFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLL 178

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
             E+ATV+  HS+TKN  E+T+QADI+I AVG+P ++    +K GAV+IDVG+N +E+ K
Sbjct: 179 LNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENGK 238

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
                 L GDV ++   E AS ITPVPGGVGPMTI ML+ NT+  AKR  
Sbjct: 239 ------LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAG 282

Length = 284

>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  396 bits (1020), Expect = e-139
 Identities = 161/291 (55%), Positives = 204/291 (70%), Gaps = 3/291 (1%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A +IDGKA A  +R  +  EV+R+K A GV PGLAV+LVG+   S  YVR+K K  +  G
Sbjct: 2   ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAG 61

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           + SFE  LP DTS+ E+L  I+  N DP++HGILVQLPLP H+D ++++ A+  EKDVDG
Sbjct: 62  MASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDG 121

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
            H +N GRLA    E   +PCTP GC+ LL R   D+ G  AVVIGRSN+VG P A LL 
Sbjct: 122 LHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLL 179

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
             +ATV+I HSRT++   + R+ADI+++AVG+P MV+G WIKPGA +IDVGIN +   + 
Sbjct: 180 AANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK 239

Query: 324 PRG-YRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
             G  RLVGDV + EA EVA AITPVPGGVGPMTIA LL+NTLT+A R   
Sbjct: 240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290

Length = 296

>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  374 bits (962), Expect = e-130
 Identities = 153/292 (52%), Positives = 190/292 (65%), Gaps = 8/292 (2%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +AK+IDGK +A+Q+R E+  +V     A    PGLAV+LVG    S  YV +K+KAC+ V
Sbjct: 2   TAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEV 61

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LPE TSE E+L  I   N DP++ GILVQLPLP HID   +L  +  +KDVD
Sbjct: 62  GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVD 121

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP N+GRLA   R PL  PCTP+G + LL RYG D  G  AVV+G SNIVG P +L L
Sbjct: 122 GFHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLEL 179

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
                TV++ H  TKN     R AD+++ AVG+P  + G WIKPGA++IDVGIN +ED K
Sbjct: 180 LLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDGK 239

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
                 LVGDV +E A E AS ITPVPGGVGPMT+A LL NTL + +  H+ 
Sbjct: 240 ------LVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHDP 285

Length = 285

>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  358 bits (921), Expect = e-124
 Identities = 149/290 (51%), Positives = 196/290 (67%), Gaps = 4/290 (1%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A ++DGKA+A +I   +  ++       G  PGLAV+ VGD   SA YVRNK+KAC  VG
Sbjct: 2   ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVG 61

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           I SF  HLP DTS+ EV   I+  N D  V GIL+QLPLP H+DE  +L+A+  +KD DG
Sbjct: 62  IASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADG 121

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
            HPLN+GRL ++G EP    CTP G + LL     DI GK+AVV+GRS +VG P AL+L 
Sbjct: 122 LHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLL 179

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
             +ATV+I HSRT++   ITR+ADI+++A G+PN++    +KPGAV++DVGI+ +    S
Sbjct: 180 AANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPS--S 237

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
               RL GDV +EE   VA+AITPVPGGVGPMT+ MLL NT+ S ++ H 
Sbjct: 238 DGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287

Length = 297

>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  358 bits (920), Expect = e-124
 Identities = 149/291 (51%), Positives = 192/291 (65%), Gaps = 9/291 (3%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A++IDG A++KQ+R E     + +  A G  PGLAVILVGD   S  YVRNK KAC+  
Sbjct: 2   TAQLIDGNALSKQLRAEAAQRAAALT-ARGHQPGLAVILVGDNPASQVYVRNKVKACEDN 60

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G +S +   P D SE E+L  I   N DP +HGILVQLPLP HID   ++ A++ EKDVD
Sbjct: 61  GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVD 120

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFH  N G L M G +PLF PCTP G +++L   G  ++G  AVVIGRSNIVG P A+LL
Sbjct: 121 GFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLL 178

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
            +  ATV+I HS+T++    TRQADI+++AVG+ N++    +KPGA +IDVG+N  +  K
Sbjct: 179 LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAGK 238

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
                 L GDV +    EVA  ITPVPGGVGPMTI MLL NT+ +A+R   
Sbjct: 239 ------LCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283

Length = 285

>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  351 bits (903), Expect = e-121
 Identities = 158/292 (54%), Positives = 200/292 (68%), Gaps = 4/292 (1%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK V+  +++E+   V   +   G VPGL VI+VG+   S  YVRNK K+C+ +G+N
Sbjct: 3   IIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMN 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LP DT+E+ +LK I   N+DP VHGILVQ PLP  IDE ++  A+   KDVDGFH
Sbjct: 63  STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQR 264
           P N+GRL M   +  F+ CTP G +ELL RY  + KGK  VV+GRSNIVG P A L+LQ+
Sbjct: 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQK 182

Query: 265 EDA---TVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
                 TV+I HS TK+    TRQADI+I+A+G+   +    +KPGAV+IDVGIN +ED 
Sbjct: 183 LKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDP 242

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
            +  GYRLVGDV YE     ASAITPVPGGVGPMTIAMLL NTL S +RV+N
Sbjct: 243 STKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294

Length = 295

>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  348 bits (895), Expect = e-120
 Identities = 148/287 (51%), Positives = 204/287 (71%), Gaps = 8/287 (2%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
            ++IDGKA+A++++ E+  +V+++K+  G+VPGL VILVGD   S  YVRNK+++  + G
Sbjct: 2   TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
             S  V LPE  S++E+L  I  +N DP+ HGILVQLPLP HI+E+ IL A+  +KDVDG
Sbjct: 62  FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP+N G L   GR P+ IPCTP G +E+   Y  +++GK AVVIGRSNIVG P A LL 
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
            ++ATV++ HSRT+N  E+ R+ADI++ A+G+ + V   ++K GAV+IDVG+N  E+ K 
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENGK- 238

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                L+GDV ++E  EVAS ITPVPGGVGPMTI ML+  T  +A R
Sbjct: 239 -----LIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280

Length = 284

>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  338 bits (868), Expect = e-116
 Identities = 135/285 (47%), Positives = 182/285 (63%), Gaps = 8/285 (2%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
            ++DGKA++ +I  ++  ++  +    G  P LAVILVG    S TYV  K KAC+ VG+
Sbjct: 2   VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
           +S    L E+T+E E+L  I   N D ++ GILVQLPLP HID + +L A+   KDVDGF
Sbjct: 62  DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
           HPLNIG+L     +  F+P TP G + LL  Y  +IKGK  V+IG SNIVG P A+L+  
Sbjct: 122 HPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
             A+VS+ H  TK+    T+ ADI+   VG+P++++ S +K GAV++D+GIN + D    
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
              RLVGDV +E     AS ITPVPGGVGPMTI  LL NTL +A+
Sbjct: 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAE 278

Length = 285

>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  318 bits (817), Expect = e-108
 Identities = 145/289 (50%), Positives = 193/289 (66%), Gaps = 8/289 (2%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
            ++IDG AVA QIRD++T  +  ++DA GV PGLA +L+ D   S TYV  K++ C+ VG
Sbjct: 2   TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           I + +V +  D   +E+   I   N D  VHGILVQ+P+P H+D++ +L  +   KDVDG
Sbjct: 61  IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLL 262
           FHP N+GRL     +  F PCTP G  +LL   G D +G   VV+GRS+IVG P A LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178

Query: 263 QRED---ATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
           Q+ D   ATV++ HSRT +    TR+ADI+++A G P ++ GS +  GA +IDVGIN V 
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV- 237

Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA 368
           DA + +GY LVGDV +E A E ASAITPVPGGVGPMT AMLL NT+ +A
Sbjct: 238 DADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286

Length = 297

>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  317 bits (813), Expect = e-107
 Identities = 153/294 (52%), Positives = 202/294 (68%), Gaps = 6/294 (2%)

Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 141
            SAK+IDGKA A ++  ++  +V  +K A G+ P LAVILVG+   S  YVRNK    + 
Sbjct: 2   MSAKLIDGKAAAARVLAQVREDVRTLK-AAGIEPALAVILVGNDPASQVYVRNKILRAEE 60

Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
            GI S E  LP DTS+  +L  I+  N DPSV+GIL+QLPLP HIDE  +L A++  KDV
Sbjct: 61  AGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDV 120

Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
           DGFH  N+G L+ +GR+ L  PCTP GC+ LL     D+ GK AVVIGRSNIVG P A L
Sbjct: 121 DGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAAL 178

Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
           L +   +V++VHSR+ + + + RQADI+++AVG+P ++   W+KPGAV+IDVGIN ++D 
Sbjct: 179 LLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD 238

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
                 RLVGDV ++ A  V SAITPVPGGVGPMTIA L+ NT+T+A+   + Q
Sbjct: 239 GRS---RLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQ 289

Length = 301

>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  315 bits (810), Expect = e-107
 Identities = 146/288 (50%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++DGKA A  IR+E+  EV+ +    G  PGLAVILVG+   S  YVRNK++AC+  GI 
Sbjct: 3   LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S    LP DT+++E+   I+  N  P + GIL+QLPLP  +D Q  L  +   KDVDGFH
Sbjct: 63  SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P N+GRLA+    P F PCTP G + LL RYG    GK+AVV+GRSNIVG P AL+L   
Sbjct: 123 PENMGRLAL--GLPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180

Query: 266 ----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
               +ATV++ HSRT +  E  R+AD +  A+G+P  V    +KPGAV++DVGIN  +D 
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
                  LVGD  +E   +VASAITPVPGGVGPMTIA LL NT+ S K
Sbjct: 241 -------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281

Length = 286

>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  311 bits (799), Expect = e-105
 Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           +++DGKA++ +I++ +  EV  +K    +VPGLAVILVGD   S TYV+ K KAC  VGI
Sbjct: 2   QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
            S    +P   S++E+L+ I++ N++P++ GILVQLPLP HID   IL A+  +KDVDGF
Sbjct: 62  YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
           HP N+GRL + G +  F+PCTP G +ELL  Y  D+KGK   V+G SNIVG P A LL  
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
            +ATV I H  TK+ +  T++ADI+I  VG+PN++    +K GA++ID+GIN  ED    
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
              RLVGDV +E   +  S ITPVPGGVGPMTIAMLLSNTL +AK
Sbjct: 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278

Length = 281

>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  309 bits (792), Expect = e-104
 Identities = 146/291 (50%), Positives = 198/291 (68%), Gaps = 4/291 (1%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           SAK+I G  + ++I +EI GEV+ +K+  G VPGL  ILVG+   S +YV  K K    +
Sbjct: 2   SAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRL 61

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G +  + +   D +E+E+L  I  +N+D S+HGILVQLPLP HI+E+ +LNA+  +KDVD
Sbjct: 62  GFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVD 121

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP+N+GRL + G E  F+PCTP G  E+L R G +  G   VV+GRSNIVG P A ++
Sbjct: 122 GFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMM 181

Query: 263 QRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
            ++    +ATV+IVH+R+KN     ++ADI+I A G PN+V+  WIKPGA +IDVG+N V
Sbjct: 182 TQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRV 241

Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
              +S     L GDV ++   E+A  ITPVPGGVGPMTIAML+ NTL SAK
Sbjct: 242 GTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAK 292

Length = 297

>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  307 bits (788), Expect = e-104
 Identities = 145/287 (50%), Positives = 198/287 (68%), Gaps = 9/287 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           AK++DGK +AK  R  +  +V  +K   G  P L+VILVG+   S +YVR+KKKA + +G
Sbjct: 3   AKILDGKQIAKDYRQGLQDQVEALK-EKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           + S  VHL E  +E+EVL  ++  N+D SV GILVQ+PLP  + EQ IL A++ EKDVDG
Sbjct: 62  MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP+NIG+L +   E  F+PCTP G +E+L     D++GK AVVIGRS+IVG P + LL 
Sbjct: 122 FHPINIGKLYI--DEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
           +++A+V+I+HSR+K+     + AD+I+SAVG+P +V    +K GAVIIDVG  P E+ K 
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGK- 238

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                L GDV Y+   E+A AITPVPGGVGP+TI M+L+NTL + K 
Sbjct: 239 -----LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280

Length = 286

>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  307 bits (788), Expect = e-104
 Identities = 140/292 (47%), Positives = 191/292 (65%), Gaps = 6/292 (2%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK +A  I + +   +  +K    + P L VILVGD   S  YVRNK++  + +G+ 
Sbjct: 4   IIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLR 63

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LP   SE  +++ I+  N+D SVHGILVQLP+P HID+  I+N +  EKDVDGFH
Sbjct: 64  SETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFH 123

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
             N+GRL    ++   IPCTPKGC+ L+     ++ G  AVVIGRSNIVG P A LL  E
Sbjct: 124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGE 183

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
           + TV+ VHS T++  +   +ADI+++AVG PN V+ SWIK GA++IDVGIN +E+     
Sbjct: 184 NCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGVK- 242

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA---KRVHNF 374
             + VGDV + E  + ASAITPVPGGVGPMTIA L+ NT+ +A   K + +F
Sbjct: 243 --KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQKGIDDF 292

Length = 294

>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  307 bits (787), Expect = e-103
 Identities = 139/291 (47%), Positives = 187/291 (64%), Gaps = 6/291 (2%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           ++IDGKA++ QI+ EI  EV+ +    G  P LA ILVG    S TYV NK KAC+  G 
Sbjct: 2   QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
            S  +    D +E+E+L  +   N D  V G +VQLPLP HI EQ ++ A+   KDVDGF
Sbjct: 62  KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQ 263
           HP+N+GR+++    P F+  TP G +ELL RY  +  GK+ VV+GRSNIVG P A L++Q
Sbjct: 122 HPINVGRMSI--GLPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179

Query: 264 RE---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
           +    D TV++ HSR+KN ++   +ADIII+A+GQP  V+   +K GAV+IDVG   V D
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239

Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
           A    G++L GDV ++E     S ITPVPGGVGPMTI  L+ NTL + K+ 
Sbjct: 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290

Length = 293

>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  306 bits (785), Expect = e-103
 Identities = 138/293 (47%), Positives = 187/293 (63%), Gaps = 9/293 (3%)

Query: 78  MASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKK 137
           M     +++IDGKA+AK+I  E+   V R+K   G+ PGLA ILVGD   S  YVR K K
Sbjct: 2   MDESYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHK 61

Query: 138 ACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM 197
           AC+ VGI + +  LP DT+++E+L+ I   N    VHGIL+QLPLP H+D Q  + A+  
Sbjct: 62  ACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121

Query: 198 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 257
            KD DGFHP N+G+L M G E   +PCTP G I  L  YG DI+GK AV++G SN+VG P
Sbjct: 122 AKDADGFHPYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKP 179

Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 317
            A +L   +ATVS+ H  T + ++ T  ADI++ A G  ++++   +K GAVI DVGI  
Sbjct: 180 MAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITK 239

Query: 318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
            ED       ++ GDV +E   + AS ITPVPGGVGP+TIAML+ + L  A++
Sbjct: 240 EED-------KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEK 285

Length = 287

>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  304 bits (780), Expect = e-102
 Identities = 127/293 (43%), Positives = 180/293 (61%), Gaps = 12/293 (4%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A ++DGKA A +I+ ++   V+ +K+  G+ PGL  +LVGD   S  YVR K + C  V
Sbjct: 2   TAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEV 60

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           GI S    LP D +++E+   I   N DP+  G +VQLPLP H+DE ++L  +   KD D
Sbjct: 61  GITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDAD 120

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           G HP N+GRL +    PL  PCTP+G + LL RY  ++ G   VVIGR   VG P  LLL
Sbjct: 121 GLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLL 178

Query: 263 QR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
            R  E+ATV++ H+ T++    TR+ADII++A G  ++V    +KPGA ++DVG++   D
Sbjct: 179 TRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD 238

Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
                  +LVGDV + +  EVA A++P PGGVGPMT A LL+N +  A+R   
Sbjct: 239 ------GKLVGDV-HPDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284

Length = 284

>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  293 bits (752), Expect = 2e-98
 Identities = 147/288 (51%), Positives = 208/288 (72%), Gaps = 9/288 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
            ++IDGK +AK+I++++T EV+ +    G  PGLAV+LVGD + S TYVRNK+K  +  G
Sbjct: 2   GEIIDGKKLAKEIQEKVTREVAELVK-EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAG 60

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           + S  + LPE+ +E+++L  +   N+D ++HGILVQLPLP HI E+ +++ +S +KDVDG
Sbjct: 61  MKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDG 120

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP+N+G L + G++  F+PCTP G IEL+   G  I+GKRAVVIGRSNIVG P A LL 
Sbjct: 121 FHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLL 178

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
            E+ATV+I HSRTK+  ++ ++ADI++ A G    V+  +IKPGA++IDVG++  E+ K 
Sbjct: 179 NENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENNK- 237

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
                L GDV +++  E A  ITPVPGGVGPMTI MLL+NTL +AKR+
Sbjct: 238 -----LCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRI 280

Length = 284

>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  289 bits (740), Expect = 1e-96
 Identities = 140/284 (49%), Positives = 185/284 (65%), Gaps = 13/284 (4%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++DGKAV+++  + +  E+       G+ P LA ++VGD   S  YVR K +AC+ VGI 
Sbjct: 2   ILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIG 57

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LP D + + VL+ I   N+DP ++GILVQLPLP  +D + ++ A+  EKDVDGFH
Sbjct: 58  SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFH 117

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           PLN+GRL + G  P F PCTP G + LLH Y   I GKRAVV+GRS  VG P A LL   
Sbjct: 118 PLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA 175

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
           DATV+I HS+T+N +   RQADI++SA G+   +    +KPGA +IDVGIN V       
Sbjct: 176 DATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG----- 230

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
             +L GDV ++   E+A AITPVPGGVGPMTIA L+ NT  +AK
Sbjct: 231 --KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272

Length = 279

>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  284 bits (729), Expect = 1e-96
 Identities = 108/172 (62%), Positives = 133/172 (77%), Gaps = 5/172 (2%)

Query: 198 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 257
           EKDVDG HP+N+GRLA+    P FIPCTP G +ELL RYG D+ GK+ VV+GRSNIVG P
Sbjct: 2   EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59

Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 317
            A LL   +ATV++ HS+TKN +E T+QADI+I AVG+P +V+G  +KPGAV+IDVGIN 
Sbjct: 60  LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119

Query: 318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
           V D     G +LVGDV +E A E ASAITPVPGGVGPMT+AML+ NT+ +AK
Sbjct: 120 VPD---KSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168

>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  288 bits (738), Expect = 2e-96
 Identities = 135/289 (46%), Positives = 190/289 (65%), Gaps = 9/289 (3%)

Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 141
             A V+DGKA+AKQI +E++  V  +K   G  P LA ILVGD   SATYVR K  AC+ 
Sbjct: 1   MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRR 60

Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
           VG++S +V LP++T+ +++L  I   N +P VHGIL+Q P+P  IDE++  +A+S+ KDV
Sbjct: 61  VGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDV 120

Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
           DG   L  GR+AM   E  +   TP G + LL  Y  ++ GK AVV+GRS I+G P A++
Sbjct: 121 DGVTCLGFGRMAM--GEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMM 178

Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
           L   +ATV+I HSRT+N  E+ +QADII+ AVG+P +++  WIK GAV++D G +P +  
Sbjct: 179 LLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGG 238

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                   VGD+  +   E+ASA TPVPGGVGPMTI  L+  T+ +A++
Sbjct: 239 G-------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEK 280

Length = 283

>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  286 bits (734), Expect = 8e-96
 Identities = 145/284 (51%), Positives = 193/284 (67%), Gaps = 8/284 (2%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++DGKA++ +I++E+  +   +K   G+   LAVILVGD   S TYV++K KAC+  GI 
Sbjct: 3   LLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIK 61

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S   HL E+T++ E+L  I+  N D SVHGILVQLPLP HI +  IL ++   KDVDGFH
Sbjct: 62  SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH 121

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P+N+G L + G E  F+PCTP G ++LL  Y  D++GK AV+IG SNIVG P A +L   
Sbjct: 122 PINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA 180

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
            ATVS+ H +TK+    TRQAD+II A G  N++R   +K G +++DVGIN +E  K   
Sbjct: 181 GATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESGK--- 237

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
              +VGDV +EE  + +S ITPVPGGVGPMTIAMLL NT+ SAK
Sbjct: 238 ---IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAK 278

Length = 282

>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

 Score =  280 bits (720), Expect = 2e-95
 Identities = 101/166 (60%), Positives = 127/166 (76%), Gaps = 8/166 (4%)

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
           HP+N+GRL +   EP F+PCTP+G +ELL RYG D+ GK  VVIGRSNIVG P ALLL  
Sbjct: 1   HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
            +ATV++ HS+TK+  EITR+ADI++ AVG+P +++  W+KPGAV+IDVGIN VE     
Sbjct: 59  ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
              +LVGDV +E   E ASAITPVPGGVGPMT+AMLL NT+ +AKR
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158

Length = 160

>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  285 bits (730), Expect = 4e-95
 Identities = 138/288 (47%), Positives = 193/288 (67%), Gaps = 9/288 (3%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A+ + G   A+ +  E+   ++++      VP L V+ +G+   S +YVR K +  +++
Sbjct: 2   AARELSGPPAAEAVYAELRARLAKLPF----VPHLRVVRLGEDPASVSYVRLKDRQAKAL 57

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G+ S    LPE TS++E+L+ I+  N DP V GILVQLPLP HID Q +L A+   KDVD
Sbjct: 58  GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVD 117

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHPLN+GRL M G E L  PCTP G + LL  YG  + GK  VV+GRSNIVG P A LL
Sbjct: 118 GFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALL 175

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
            REDATV++ HS+T++   +TR+AD+++ AVG+P+++    ++PGAV++DVGIN V    
Sbjct: 176 LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNG 235

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                 L GDV + E  EVA A+TPVPGGVGPMT+AML++NT+ +A R
Sbjct: 236 GRD--ILTGDV-HPEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALR 280

Length = 287

>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  283 bits (726), Expect = 1e-94
 Identities = 116/279 (41%), Positives = 177/279 (63%), Gaps = 9/279 (3%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           ++I+GK VA +I++EI   V   K+    +P +A ILVG+   S  Y+ N++K   S+GI
Sbjct: 3   QIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGI 62

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
           +  ++ L E  SE++++  I   N D +VHGI++QLPLP H+DE+ I N +   KD+D  
Sbjct: 63  DFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCL 122

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
             +++G+      E  F+PCTP   I L+     DI+GK  VVIGRSNIVG P A LL  
Sbjct: 123 TFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN 180

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
           E+ATV+I HS+TKN +E+ ++ADI++ A+G+P  +   ++K GA++IDVG + V      
Sbjct: 181 ENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG---- 236

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
              ++ GDV +++  + AS ITPVPGGVG +T  +L+ N
Sbjct: 237 ---KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKN 272

Length = 278

>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  276 bits (706), Expect = 1e-91
 Identities = 147/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK +A +++ E+  EV  +  A GV  GL V+ VGD   SA YVR K+K C+ VGI 
Sbjct: 3   LIDGKQIAAKVKGEVATEVRALA-ARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S E HLP  T++ E+L  I+  N DP+VHGILVQLPLP H+DE+++L+A+S  KD DGFH
Sbjct: 62  SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P N+G L++ G   +  PCTP G + +L     D KGKRA+V+GRSNIVG P A++L   
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
            ATV+I HSRT +      +ADI+++A+G+  +V+G+W+K GAV+IDVG+N + D     
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
             +LVGDV +  A   ASAITPVPGGVGPMT AMLL NT+  AKR
Sbjct: 237 --KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279

Length = 282

>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  276 bits (706), Expect = 1e-91
 Identities = 134/287 (46%), Positives = 191/287 (66%), Gaps = 9/287 (3%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A  +DG+AV+K+I  ++   V+++     V P LAV+LVG    S  YVRNK++  + +G
Sbjct: 1   ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59

Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           + S    LPE T++ ++L  ++  N DP V  ILVQLPLP  +DEQ++++A+  +KDVDG
Sbjct: 60  VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           F P+++GRL     EP  +  TP G + LL  Y  D+ GKR V++GRSNIVG P A L+ 
Sbjct: 120 FSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
             DATV+I HS+T+N +++T++ADI++ AVG P+ +    +KPGAV+IDVGI+   D K 
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADGK- 236

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                L+GDV       +ASAITPVPGGVGPMTIA L++ T+T AKR
Sbjct: 237 -----LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278

Length = 282

>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  266 bits (682), Expect = 6e-88
 Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 8/287 (2%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK+++K +++ +  +V   K    + P L  I+VG+   S TYV +K+KAC  VGI+
Sbjct: 3   LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 62

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LPE T+E E+L+ I   N+D SVH ILVQLPLP HI++ +++ ++  EKDVDGFH
Sbjct: 63  SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 122

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P N+GRL +R ++ L   CTPKG + +L  YG   +G  AVV+G SN+VG P + LL   
Sbjct: 123 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 181

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
            ATV+  H  T + +  T +ADI+I AVG+PN +    +K GAV+IDVGIN V+      
Sbjct: 182 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 236

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
             ++VGDV +    +  +AITPVPGGVGPMTI  LL NT   A+ ++
Sbjct: 237 --KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 281

Length = 282

>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  264 bits (677), Expect = 4e-87
 Identities = 136/289 (47%), Positives = 184/289 (63%), Gaps = 10/289 (3%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++ G   A+ I   I   +S    A    PGLAV+L+G+   S  YV  K K    +G+ 
Sbjct: 2   LLKGAPAAEHILATIKENISASSTA----PGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S    LP D +  ++LK I   N+DP++HGILVQLPLP H+D Q+IL A+S +KDVDG H
Sbjct: 58  SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQR 264
           P+N+G+L + G    FIPCTP G IELL  Y   + G+   ++GRSNIVG P AALL+Q+
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176

Query: 265 E---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
               +ATV+++HS+++N  EI + ADIII+A+G P  ++   I   AVI+DVG + V  A
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP-A 235

Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
            +P+GY LVGDV +        AITPVPGGVGPMT+AML+ NT  S  R
Sbjct: 236 ANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284

Length = 287

>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  256 bits (656), Expect = 6e-84
 Identities = 123/284 (43%), Positives = 178/284 (62%), Gaps = 7/284 (2%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGKA+A +I  ++  E+  +K      P LA++LVGD   S  YV+NK K    +GI+
Sbjct: 4   IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           +  V+L       +++  I+  N D  + GI+VQLPLP  ID+  IL+AVS  KD+DGFH
Sbjct: 64  TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           PLN+G L   G    FIPCT  GC+ ++ +Y  ++ GK  V+IGRSNIVG P + LL +E
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
           + +V+I HS+T N   IT +ADI+++A+G P  +   +  P +++IDVGIN +       
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS------ 236

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
           G +++GDV +E        ITPVPGG+GPMTIA LL NT+ + K
Sbjct: 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFK 280

Length = 288

>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  254 bits (650), Expect = 4e-83
 Identities = 132/284 (46%), Positives = 182/284 (64%), Gaps = 12/284 (4%)

Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++DGK ++++IR+EI   +   K     +P LA ILVG+   S TYV  K KAC  VG+ 
Sbjct: 5   LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64

Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + L E T+ +E+L  I   N DP+V GIL+Q P+P  IDE++  + +++EKDVDG  
Sbjct: 65  SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124

Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
            L+ G+L+M G E  ++PCTP G + LL  YG D+ GK AVV+GRS I+G P A+LL   
Sbjct: 125 TLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182

Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
           +ATV++ HS+T+N   I RQADII+ AVG+P  ++  WI  GAV++D G NP        
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGN------ 236

Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
               VGD+   +A + +S  TPVPGGVGPMTIA+LL  TL S K
Sbjct: 237 ----VGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFK 276

Length = 284

>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

 Score =  175 bits (446), Expect = 1e-54
 Identities = 68/118 (57%), Positives = 88/118 (74%), Gaps = 1/118 (0%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           K++DGKA+AK+I++E+  EV+++K   G+ P LAVILVGD   S  YVR+K+KA + +GI
Sbjct: 1   KILDGKALAKKIKEELKEEVAKLK-EKGITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
            S  + LPED +E+E+L  I   N DPSVHGILVQLPLP HIDE  ILNA+  EKDVD
Sbjct: 60  ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117

Length = 117

>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  123 bits (309), Expect = 4e-34
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 22/155 (14%)

Query: 222 IPCTPKGC-------IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 274
            PCTP           ELL++ G  + GK+ +V+GRS IVG P   LLQR+ ATV     
Sbjct: 1   GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60

Query: 275 RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVC 334
           +T   +     AD+++    +P  V   WIKPGA +I+                    + 
Sbjct: 61  KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPT---------------KLS 105

Query: 335 YEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
            ++  E AS   P+ GGVG +T+AM + N + S +
Sbjct: 106 GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, mono-functional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express a monofunctional DH. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 140

>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of methylene-tetrahydrofolate dehydrogenase

 Score = 77.9 bits (192), Expect = 6e-17
 Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 58/207 (28%)

Query: 198 EKDVDGFHPL-------NIGRLAMRGREPLFIPCTPKGCIELLH---------RYGFDIK 241
            KDV+G           NI  L    R+   +PCTP   +++L           YG  + 
Sbjct: 2   HKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLY 61

Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATV-SI--------------------VHSRTKNPE 280
           GK   +I RS +VG P A LL  + A V S+                    V        
Sbjct: 62  GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTL 121

Query: 281 EITRQADIIISAVGQPNM-VRGSWIKPGAVIIDV-GINPVEDAKSPRGYRLVGDVCYEEA 338
           +   Q+D++I+ V  PN  V    +K GA+ I+   I   E                   
Sbjct: 122 DCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEP----------------SV 165

Query: 339 CEVASAITPVPGGVGPMTIAMLLSNTL 365
            E AS   P    +G +TIAMLL N L
Sbjct: 166 KEKASIYVPS---IGKVTIAMLLRNLL 189

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional DHs from S. cerevisiae and certain bacteria. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 197

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)

Query: 224 CTPKGCIELLHRYGF----DIKGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTKN 278
            T  G + LL   G      +KGK  VV+G    VG   A LL       V +       
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR---- 55

Query: 279 PEEITRQADIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
                   DI+++A      V     + I  GAV+ID+ 
Sbjct: 56  --------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 15/69 (21%)

Query: 267 ATVSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI- 315
           A  + ++S+ +  EE  ++AD++I AV  P           MV+   +KPG+VI+DV   
Sbjct: 65  ARFTTLYSQAELLEEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVIVDVAAD 122

Query: 316 --NPVEDAK 322
               +E ++
Sbjct: 123 QGGCIETSR 131

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains

 Score = 38.5 bits (91), Expect = 0.004
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 12/57 (21%)

Query: 269 VSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI 315
           V+ ++S   N EE  ++AD++I AV  P           MV+   +KPG+VI+DV I
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAVLIPGAKAPKLVTEEMVK--TMKPGSVIVDVAI 269

Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms. Length = 359

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	100.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	100.0
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	100.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	100.0
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	100.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	100.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	100.0
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	99.9
PRK12548	289	shikimate 5-dehydrogenase; Provisional	99.89
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	99.88
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	99.88
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	99.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	99.88
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	99.88
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	99.87
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.86
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	99.81
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	99.79
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.6
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.5
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.16
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.12
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	99.09
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.03
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.01
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.97
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.86
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.74
PRK14982	340	acyl-ACP reductase; Provisional	98.71
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.69
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.68
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.58
PLN00203	519	glutamyl-tRNA reductase	98.47
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.45
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.43
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.43
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.41
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.31
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.3
PLN02494	477	adenosylhomocysteinase	98.25
PLN02928	347	oxidoreductase family protein	98.24
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.23
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.23
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.08
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.05
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.03
PRK13243	333	glyoxylate reductase; Reviewed	98.02
PRK06436	303	glycerate dehydrogenase; Provisional	97.97
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.97
PRK06932	314	glycerate dehydrogenase; Provisional	97.97
PRK06487	317	glycerate dehydrogenase; Provisional	97.94
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.94
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.92
PRK07574	385	formate dehydrogenase; Provisional	97.92
COG5322	351	Predicted dehydrogenase [General function predicti	97.92
PRK12480	330	D-lactate dehydrogenase; Provisional	97.89
PRK08605	332	D-lactate dehydrogenase; Validated	97.87
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.86
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.82
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.81
PLN02306	386	hydroxypyruvate reductase	97.8
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.8
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.78
PLN03139	386	formate dehydrogenase; Provisional	97.76
PRK12862	763	malic enzyme; Reviewed	97.73
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.72
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.69
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.69
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.68
PRK08291	330	ectoine utilization protein EutC; Validated	97.67
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.67
PRK08618	325	ornithine cyclodeaminase; Validated	97.6
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.58
PRK06141	314	ornithine cyclodeaminase; Validated	97.55
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.53
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.51
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.5
PRK07340	304	ornithine cyclodeaminase; Validated	97.48
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.45
PRK12861	764	malic enzyme; Reviewed	97.38
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	97.36
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.33
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.31
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.28
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.25
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.22
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.13
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.08
PLN02712	667	arogenate dehydrogenase	97.04
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.03
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.97
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.96
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.96
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.96
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.94
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.91
PLN02256	304	arogenate dehydrogenase	96.9
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.89
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.82
PLN02342	348	ornithine carbamoyltransferase	96.75
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.75
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.72
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.59
PRK06545	359	prephenate dehydrogenase; Validated	96.59
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.58
PRK02102	331	ornithine carbamoyltransferase; Validated	96.57
PRK07417	279	arogenate dehydrogenase; Reviewed	96.56
PRK06407	301	ornithine cyclodeaminase; Provisional	96.56
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.55
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.54
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.53
PRK06046	326	alanine dehydrogenase; Validated	96.52
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.52
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.51
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.51
PRK06823	315	ornithine cyclodeaminase; Validated	96.5
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.5
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.49
PRK14031	444	glutamate dehydrogenase; Provisional	96.48
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.47
PRK08818	370	prephenate dehydrogenase; Provisional	96.47
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.46
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.45
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.45
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.44
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.44
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.42
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.4
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.39
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.35
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.33
PRK13529	563	malate dehydrogenase; Provisional	96.31
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.26
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.25
PLN02527	306	aspartate carbamoyltransferase	96.23
PRK08655	437	prephenate dehydrogenase; Provisional	96.21
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.2
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.18
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.14
PRK14805	302	ornithine carbamoyltransferase; Provisional	96.14
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.14
PLN02688	266	pyrroline-5-carboxylate reductase	96.14
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.13
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.13
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.12
PRK08507	275	prephenate dehydrogenase; Validated	96.09
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.08
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.07
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.06
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.04
PRK07589	346	ornithine cyclodeaminase; Validated	96.02
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.01
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.98
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.96
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.93
PRK06949	258	short chain dehydrogenase; Provisional	95.88
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.87
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.81
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.81
PRK09414	445	glutamate dehydrogenase; Provisional	95.8
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.79
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.78
PRK06398	258	aldose dehydrogenase; Validated	95.75
PRK06138	252	short chain dehydrogenase; Provisional	95.74
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.7
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.69
PTZ00117	319	malate dehydrogenase; Provisional	95.68
PRK12367	245	short chain dehydrogenase; Provisional	95.68
PLN02712	667	arogenate dehydrogenase	95.64
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.62
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.62
PRK14030	445	glutamate dehydrogenase; Provisional	95.62
PRK09072	263	short chain dehydrogenase; Provisional	95.59
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.59
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.57
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.55
PRK06199	379	ornithine cyclodeaminase; Validated	95.55
PRK06523	260	short chain dehydrogenase; Provisional	95.54
PRK07856	252	short chain dehydrogenase; Provisional	95.52
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.52
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.5
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.49
PRK07680	273	late competence protein ComER; Validated	95.48
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.47
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.37
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.36
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.33
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.32
PLN02477	410	glutamate dehydrogenase	95.27
PRK05866	293	short chain dehydrogenase; Provisional	95.26
PRK08862	227	short chain dehydrogenase; Provisional	95.26
PRK10637	457	cysG siroheme synthase; Provisional	95.25
PLN02858	1378	fructose-bisphosphate aldolase	95.23
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.23
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.21
PRK12828	239	short chain dehydrogenase; Provisional	95.18
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.08
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.08
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.08
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.06
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.06
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.05
PRK12939	250	short chain dehydrogenase; Provisional	95.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.99
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.99
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.98
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.98
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.97
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.97
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.95
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.92
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.92
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.9
PLN02858	1378	fructose-bisphosphate aldolase	94.9
PRK08085	254	gluconate 5-dehydrogenase; Provisional	94.88
PLN02253	280	xanthoxin dehydrogenase	94.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.86
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.86
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.85
PRK08339	263	short chain dehydrogenase; Provisional	94.85
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.81
PRK05867	253	short chain dehydrogenase; Provisional	94.8
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.8
PRK07062	265	short chain dehydrogenase; Provisional	94.8
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.79
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.79
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.76
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.75
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	94.72
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.72
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.7
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	94.7
PRK07063	260	short chain dehydrogenase; Provisional	94.68
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.68
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.67
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.66
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.65
PRK06172	253	short chain dehydrogenase; Provisional	94.65
PRK05717	255	oxidoreductase; Validated	94.64
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.63
PRK08628	258	short chain dehydrogenase; Provisional	94.62
PRK08265	261	short chain dehydrogenase; Provisional	94.61
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.59
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.57
PRK12937	245	short chain dehydrogenase; Provisional	94.53
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.5
PRK06182	273	short chain dehydrogenase; Validated	94.49
PRK06057	255	short chain dehydrogenase; Provisional	94.45
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.45
PRK06179	270	short chain dehydrogenase; Provisional	94.44
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.44
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.38
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.38
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.38
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.37
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	94.33
PRK12829	264	short chain dehydrogenase; Provisional	94.32
PRK06125	259	short chain dehydrogenase; Provisional	94.31
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.31
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.31
PRK05872	296	short chain dehydrogenase; Provisional	94.3
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.29
PRK09242	257	tropinone reductase; Provisional	94.29
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.28
PRK07890	258	short chain dehydrogenase; Provisional	94.28
PRK06223	307	malate dehydrogenase; Reviewed	94.28
PRK08703	239	short chain dehydrogenase; Provisional	94.25
PRK07060	245	short chain dehydrogenase; Provisional	94.24
PRK09291	257	short chain dehydrogenase; Provisional	94.22
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.2
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.2
PRK09186	256	flagellin modification protein A; Provisional	94.18
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.18
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.17
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.16
PRK08264	238	short chain dehydrogenase; Validated	94.13
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.13
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.12
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.11
PRK06841	255	short chain dehydrogenase; Provisional	94.1
PRK07774	250	short chain dehydrogenase; Provisional	94.09
PRK05854	313	short chain dehydrogenase; Provisional	94.07
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.07
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.06
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	94.06
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.05
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.04
PRK07035	252	short chain dehydrogenase; Provisional	94.04
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	94.03
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.02
PRK05225	487	ketol-acid reductoisomerase; Validated	94.01
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.01
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.01
PRK06196	315	oxidoreductase; Provisional	94.0
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.0
PRK06180	277	short chain dehydrogenase; Provisional	94.0
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.99
PRK07478	254	short chain dehydrogenase; Provisional	93.96
PRK08277	278	D-mannonate oxidoreductase; Provisional	93.96
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.95
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.95
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.94
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.94
PRK07024	257	short chain dehydrogenase; Provisional	93.93
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	93.92
PRK08223	287	hypothetical protein; Validated	93.91
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.89
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.89
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	93.89
PLN02427	386	UDP-apiose/xylose synthase	93.88
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.88
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.87
PRK07825	273	short chain dehydrogenase; Provisional	93.87
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.87
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.87
PRK08589	272	short chain dehydrogenase; Validated	93.86
PRK06500	249	short chain dehydrogenase; Provisional	93.85
PRK06194	287	hypothetical protein; Provisional	93.85
PRK05876	275	short chain dehydrogenase; Provisional	93.84
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.81
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.81
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.79
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.79
PRK07576	264	short chain dehydrogenase; Provisional	93.76
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.76
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.74
PLN02178	375	cinnamyl-alcohol dehydrogenase	93.71
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.7
PRK07067	257	sorbitol dehydrogenase; Provisional	93.69
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.67
PRK12743	256	oxidoreductase; Provisional	93.66
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.64
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.64
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.63
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.62
CHL00194	317	ycf39 Ycf39; Provisional	93.59
KOG0725	270	consensus Reductases with broad range of substrate	93.57
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.57
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.55
PLN02602	350	lactate dehydrogenase	93.55
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.54
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	93.54
PRK07814	263	short chain dehydrogenase; Provisional	93.53
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.52
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.51
PLN00198	338	anthocyanidin reductase; Provisional	93.51
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.47
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.45
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.42
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.42
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	93.37
PRK06139	330	short chain dehydrogenase; Provisional	93.36
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.34
PRK06114	254	short chain dehydrogenase; Provisional	93.33
PRK12742	237	oxidoreductase; Provisional	93.32
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.26
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	93.26
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.22
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.21
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.21
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.19
PRK07326	237	short chain dehydrogenase; Provisional	93.16
COG2910	211	Putative NADH-flavin reductase [General function p	93.15
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.14
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.13
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.12
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	93.11
PRK06198	260	short chain dehydrogenase; Provisional	93.1
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	93.1
PLN02778	298	3,5-epimerase/4-reductase	93.08
PRK06181	263	short chain dehydrogenase; Provisional	93.04
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	93.04
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.03
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	93.01
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	92.99
PRK05875	276	short chain dehydrogenase; Provisional	92.99
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.98
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.97
PLN02214	342	cinnamoyl-CoA reductase	92.95
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.94
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.91
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.87
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.86
PLN03209	576	translocon at the inner envelope of chloroplast su	92.85
PRK06197	306	short chain dehydrogenase; Provisional	92.84
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	92.81
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	92.8
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	92.76
PRK12827	249	short chain dehydrogenase; Provisional	92.76
PRK08226	263	short chain dehydrogenase; Provisional	92.76
PRK05086	312	malate dehydrogenase; Provisional	92.75
PLN02383	344	aspartate semialdehyde dehydrogenase	92.74
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	92.74
PRK08263	275	short chain dehydrogenase; Provisional	92.72
PRK08643	256	acetoin reductase; Validated	92.69
PLN00106	323	malate dehydrogenase	92.68
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.66
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.66
PRK07201	657	short chain dehydrogenase; Provisional	92.64
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	92.62
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.59
PRK08278	273	short chain dehydrogenase; Provisional	92.58
PRK06444	197	prephenate dehydrogenase; Provisional	92.57
PRK06914	280	short chain dehydrogenase; Provisional	92.57
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	92.53
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.47
PRK09135	249	pteridine reductase; Provisional	92.46
PRK05993	277	short chain dehydrogenase; Provisional	92.44
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	92.41
PRK07677	252	short chain dehydrogenase; Provisional	92.39
COG0300	265	DltE Short-chain dehydrogenases of various substra	92.39
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.38
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.36
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.33
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.32
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.31
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.31
PRK07806	248	short chain dehydrogenase; Provisional	92.3
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.29
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.29
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.28
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	92.28
PRK07109	334	short chain dehydrogenase; Provisional	92.27
PRK07577	234	short chain dehydrogenase; Provisional	92.22
PRK10538	248	malonic semialdehyde reductase; Provisional	92.21
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	92.18
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.15
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.14
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	92.11
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	92.07
PRK07985	294	oxidoreductase; Provisional	92.03
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	92.02
PRK06701	290	short chain dehydrogenase; Provisional	91.97
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.96
PRK08267	260	short chain dehydrogenase; Provisional	91.95
PRK12744	257	short chain dehydrogenase; Provisional	91.93
PRK09620	229	hypothetical protein; Provisional	91.92
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	91.92
PRK07831	262	short chain dehydrogenase; Provisional	91.9
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.89
PLN02206	442	UDP-glucuronate decarboxylase	91.87
PRK08303	305	short chain dehydrogenase; Provisional	91.86
PRK06720	169	hypothetical protein; Provisional	91.83
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	91.83
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	91.8
PRK12746	254	short chain dehydrogenase; Provisional	91.74
PRK06128	300	oxidoreductase; Provisional	91.67
PLN02653	340	GDP-mannose 4,6-dehydratase	91.61
PRK07791	286	short chain dehydrogenase; Provisional	91.6
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.5
PRK08324	681	short chain dehydrogenase; Validated	91.49
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.46
PLN02260	668	probable rhamnose biosynthetic enzyme	91.46
PRK06483	236	dihydromonapterin reductase; Provisional	91.45
PRK05855	582	short chain dehydrogenase; Validated	91.39
PRK08177	225	short chain dehydrogenase; Provisional	91.39
PRK10423	327	transcriptional repressor RbsR; Provisional	91.39
PRK05442	326	malate dehydrogenase; Provisional	91.36
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.31

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=1.3e-104  Score=785.87  Aligned_cols=363  Identities=81%  Similarity=1.197  Sum_probs=332.1

Q ss_pred             cceeeeccccccccceeccccccccCCCccccccccccccCCCCCCcccccceeeecCCCCCCCcccccccccccccccc
Q 017184            5 RSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASA   84 (375)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~a   84 (375)
                      +|++|+|||||+++||+||+|..+ ||+|++..|+..  +...++.+...+.|.+.+++. ..+.+.    ..+++||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~   73 (364)
T PLN02616          2 ASLMFTDCSSSTTSRLIHFNRIST-PFNGTFLLRRCV--GPLRVRTTASGRGCCINSSSS-PSPVIN----ADTGSEGGA   73 (364)
T ss_pred             chhhhccccccchhhhhHHhhccc-ccccccccceec--cccccCccccccccccCCCCC-cchhhh----hhcCccccC
Confidence            679999999999999999999865 899999998732  333344444456777766655 222333    337778778


Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus        74 ~ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I  153 (364)
T PLN02616         74 KVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFI  153 (364)
T ss_pred             eEeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            89999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|++.++|+||||+||+++|++|+++++||+
T Consensus       154 ~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l~GK~  233 (364)
T PLN02616        154 SGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKR  233 (364)
T ss_pred             HHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            99999999999999999999999999999999999999999999999998654678999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||||+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||||++|||+|+|++++++++
T Consensus       234 vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~~~~~  313 (364)
T PLN02616        234 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSP  313 (364)
T ss_pred             EEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997654444


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      +|+|++|||||+++.++|++||||||||||||++|||+|++++++++.+|+
T Consensus       314 ~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~~~  364 (364)
T PLN02616        314 RGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHNFQ  364 (364)
T ss_pred             CCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            566899999999999999999999999999999999999999999998874

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=2.5e-100  Score=752.35  Aligned_cols=344  Identities=59%  Similarity=0.948  Sum_probs=309.0

Q ss_pred             cceeeeccccccccceeccccccccCCCccccccccccccCCCCCCcccccceeeecCCCCCCCcccccccccccccccc
Q 017184            5 RSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSPSPSLPVMNVSCSATMASEASA   84 (375)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~a   84 (375)
                      +|++|+||||++|+||++|+|....|         |+   .+.-.|..|+ +.+            .....+..++|+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~   56 (345)
T PLN02897          2 LASAHTKAFRLATRDVHCFSSILVSP---------PL---VSLDLPENWI-PYS------------DPPPPVSFETEQKT   56 (345)
T ss_pred             chhhhhhccccchhhhhhhhhhhcCC---------cc---cccccccCCC-ccc------------cccccccccccccc
Confidence            67999999999999999998775533         12   1111122221 111            11111224555667


Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus        57 ~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I  136 (345)
T PLN02897         57 VVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSAL  136 (345)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHH
Confidence            89999999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|++|+++++|+||||.||+++|++|+++++||+
T Consensus       137 ~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~  216 (345)
T PLN02897        137 RKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKN  216 (345)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCE
Confidence            99999999999999999999999999999999999999999999999988654578999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||||+|+.+++++.
T Consensus       217 vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~~~~~~  296 (345)
T PLN02897        217 AVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCE  296 (345)
T ss_pred             EEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997554444


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                      .|+|++|||||+++.++|++||||||||||||++|||+|+++++++|++
T Consensus       297 ~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~~  345 (345)
T PLN02897        297 FGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIFL  345 (345)
T ss_pred             CCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence            4668999999999999999999999999999999999999999999864

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=100.00  E-value=9.8e-93  Score=680.79  Aligned_cols=282  Identities=57%  Similarity=0.921  Sum_probs=274.4

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|+++++++++++++++++.++.|+|++|+|||||+|+.|+++|.|+|+++||.++.++||++++++||++.|
T Consensus         1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I   80 (283)
T COG0190           1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALI   80 (283)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHH
Confidence            37999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+++++++|+|+||||||||+|.|+|..+  ++.|+||||.|++++|++|+++++||+
T Consensus        81 ~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~  158 (283)
T COG0190          81 DELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKN  158 (283)
T ss_pred             HHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999976  788999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||||++.+|++.|||||+||++|+|+.+++++|||||+|+|+|+++++||||||++|||||+|++++    
T Consensus       159 ~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~----  234 (283)
T COG0190         159 VVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND----  234 (283)
T ss_pred             EEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                        +|++|||||+++.++|++||||||||||||++|||+|++++++++.+.
T Consensus       235 --~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~~  282 (283)
T COG0190         235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGE  282 (283)
T ss_pred             --CceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence              289999999999999999999999999999999999999999987653

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-91  Score=679.17  Aligned_cols=282  Identities=43%  Similarity=0.757  Sum_probs=272.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|.|+++||+++.++||++++|+||++.
T Consensus         2 ~~il~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~   81 (288)
T PRK14171          2 NNIIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISK   81 (288)
T ss_pred             CeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57999999999999999999999998878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|. .++|+||||+||+++|++|+++++||
T Consensus        82 I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~GK  160 (288)
T PRK14171         82 INELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTGK  160 (288)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999763 37899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+||++++++|||||+|+|+|++|+++|||+|++|||+|+|+..+   
T Consensus       161 ~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~~---  237 (288)
T PRK14171        161 NVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRISG---  237 (288)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999743   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        | |++|||||+++.++|++||||||||||||++|||+|+++++++.+
T Consensus       238 --g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  283 (288)
T PRK14171        238 --N-KIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL  283 (288)
T ss_pred             --C-CeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence              2 899999999999999999999999999999999999999998654

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-91  Score=677.31  Aligned_cols=282  Identities=51%  Similarity=0.895  Sum_probs=274.0

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++ |++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~il~Gk~iA~~i~~~ik~~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   80 (284)
T PRK14170          2 GEIIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSV   80 (284)
T ss_pred             CeEEEhHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            579999999999999999999999877 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.||+++|++|+++++||
T Consensus        81 I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk  158 (284)
T PRK14170         81 VEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEGK  158 (284)
T ss_pred             HHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  56899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+.++   
T Consensus       159 ~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~---  235 (284)
T PRK14170        159 RAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDEN---  235 (284)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999644   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                        | |++|||||+++.++|+++|||||||||||++|||+|+++++++++.+
T Consensus       236 --g-kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  283 (284)
T PRK14170        236 --N-KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM  283 (284)
T ss_pred             --C-CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhhc
Confidence              2 89999999999999999999999999999999999999999998765

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.8e-91  Score=679.08  Aligned_cols=285  Identities=48%  Similarity=0.813  Sum_probs=274.0

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I   81 (293)
T PRK14185          2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKV   81 (293)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~  159 (293)
T PRK14185         82 RELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKK  159 (293)
T ss_pred             HHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999976  578999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhC----CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~----gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+|||||++||+|+++||+++    |||||+||++|+||.+++++|||||+|+|+|++|+++|||+|++|||+|+|+.++
T Consensus       160 vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~  239 (293)
T PRK14185        160 CVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD  239 (293)
T ss_pred             EEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCccccc
Confidence            999999999999999999998    7999999999999999999999999999999999999999999999999999755


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV  371 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~  371 (375)
                      +++..|+|++|||||+++.++|++||||||||||||++|||+|+++++++.
T Consensus       240 ~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  290 (293)
T PRK14185        240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA  290 (293)
T ss_pred             ccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            333345589999999999999999999999999999999999999999764

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=100.00  E-value=3e-91  Score=679.16  Aligned_cols=290  Identities=64%  Similarity=1.080  Sum_probs=278.0

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++++|+++.
T Consensus         9 ~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~   88 (299)
T PLN02516          9 AQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISK   88 (299)
T ss_pred             CeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57999999999999999999999998879999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.++..++|+||||+||+++|++|+++++||
T Consensus        89 I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk  168 (299)
T PLN02516         89 VHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGK  168 (299)
T ss_pred             HHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999764457899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||||+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+.+++..
T Consensus       169 ~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~~~~~  248 (299)
T PLN02516        169 KAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSK  248 (299)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999754333


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                      ..|.|++|||||+++.++|+++|||||||||||++|||+|+++++++|+.
T Consensus       249 ~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~  298 (299)
T PLN02516        249 KSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA  298 (299)
T ss_pred             cCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            33558999999999999999999999999999999999999999999975

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3e-91  Score=679.06  Aligned_cols=293  Identities=50%  Similarity=0.822  Sum_probs=277.1

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         1 m~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~   80 (297)
T PRK14168          1 MSAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELL   80 (297)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            34679999999999999999999999988789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+..++|+||||.||+++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~  160 (297)
T PRK14168         81 ALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETS  160 (297)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999998754478999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhC----CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~----gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~  317 (375)
                      ||+|+|||||++||+|+++||+++    |||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+
T Consensus       161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~  240 (297)
T PRK14168        161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNR  240 (297)
T ss_pred             CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCc
Confidence            999999999999999999999998    8999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       318 ~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +.+..+.++++++|||||+++.++|++||||||||||||++|||+|+++++++|++.
T Consensus       241 ~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~  297 (297)
T PRK14168        241 VGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL  297 (297)
T ss_pred             cCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            632111112249999999999999999999999999999999999999999999863

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.8e-91  Score=672.34  Aligned_cols=280  Identities=48%  Similarity=0.813  Sum_probs=271.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++ |++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+||++.
T Consensus         1 ~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   79 (282)
T PRK14169          1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAK   79 (282)
T ss_pred             CeeeehHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            468999999999999999999999877 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.+  .++|+||||+||+++|++|+++++||
T Consensus        80 I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk  157 (282)
T PRK14169         80 VAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGK  157 (282)
T ss_pred             HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  57899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+||++++++|||||+|+|+|++|++||||+|++|||+|+|+..+   
T Consensus       158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~---  234 (282)
T PRK14169        158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGAD---  234 (282)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999644   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        | |++|||||+++.++|++||||||||||||++|||+|+++++++..
T Consensus       235 --g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  280 (282)
T PRK14169        235 --G-KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA  280 (282)
T ss_pred             --C-CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence              2 899999999999999999999999999999999999999998754

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.5e-91  Score=674.65  Aligned_cols=286  Identities=48%  Similarity=0.784  Sum_probs=273.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~ildGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~   81 (294)
T PRK14187          2 TNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEK   81 (294)
T ss_pred             cEEeehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            47899999999999999999999988778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++||
T Consensus        82 I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~Gk  161 (294)
T PRK14187         82 INELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGS  161 (294)
T ss_pred             HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999875346899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+.+++. 
T Consensus       162 ~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~~~~-  240 (294)
T PRK14187        162 DAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGG-  240 (294)
T ss_pred             EEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccCCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999964321 


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        ..|++|||||+++.++|+++|||||||||||++|||+|+++++++..
T Consensus       241 --~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  287 (294)
T PRK14187        241 --VKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQK  287 (294)
T ss_pred             --ccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence              12799999999999999999999999999999999999999998754

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.5e-91  Score=671.31  Aligned_cols=280  Identities=51%  Similarity=0.820  Sum_probs=270.8

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|.|+++||+++.++||++++|+|+++.|
T Consensus         2 ~il~Gk~~a~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I   80 (282)
T PRK14166          2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALI   80 (282)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999877 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|. .++|+||||+||+++|++|+++++||+
T Consensus        81 ~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~  159 (282)
T PRK14166         81 NTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKD  159 (282)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999763 468999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||.+||||+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+..+    
T Consensus       160 vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~----  235 (282)
T PRK14166        160 AVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLES----  235 (282)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999643    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                       | |++|||||+++.++|++||||||||||||++|||+|+++++++..
T Consensus       236 -g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  281 (282)
T PRK14166        236 -G-KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  281 (282)
T ss_pred             -C-CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence             2 899999999999999999999999999999999999999998754

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.9e-91  Score=670.81  Aligned_cols=279  Identities=52%  Similarity=0.866  Sum_probs=270.7

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~ildGk~iA~~i~~~ik~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I   80 (282)
T PRK14182          2 NLIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALI   80 (282)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999877 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccc-cccCCHHHHHHHHHHhCCCCCCC
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPL-FIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~-~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      ++||+|++||||+||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.|  ..+ |+||||+||+++|++|+++++||
T Consensus        81 ~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk  158 (282)
T PRK14182         81 ARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGK  158 (282)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999986  345 89999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+..+   
T Consensus       159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~---  235 (282)
T PRK14182        159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLAD---  235 (282)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999644   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        | |++|||||+++.++|+++|||||||||||++|||+|+++++++|.
T Consensus       236 --g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        236 --G-KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             --C-CeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence              2 899999999999999999999999999999999999999999884

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.2e-90  Score=674.73  Aligned_cols=287  Identities=49%  Similarity=0.828  Sum_probs=275.1

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|+++++++++++++|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   80 (297)
T PRK14167          2 TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDT   80 (297)
T ss_pred             CeEEeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            579999999999999999999999876 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  ++.|+||||+||+++|++|+++++||
T Consensus        81 I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk  158 (297)
T PRK14167         81 IDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEGA  158 (297)
T ss_pred             HHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  57899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhC----CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE  319 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~----gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~  319 (375)
                      +|+|||||++||||+++||+++    |||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+.+
T Consensus       159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~  238 (297)
T PRK14167        159 DVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD  238 (297)
T ss_pred             EEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccC
Confidence            9999999999999999999998    899999999999999999999999999999999999999999999999999964


Q ss_pred             CCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       320 ~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +. +.+|+|++|||||+++.++|++||||||||||||++|||+|+++++++.+++
T Consensus       239 ~~-~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  292 (297)
T PRK14167        239 AD-TEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV  292 (297)
T ss_pred             cc-cccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            31 2235589999999999999999999999999999999999999999988765

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-90  Score=671.02  Aligned_cols=283  Identities=55%  Similarity=0.904  Sum_probs=274.2

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |++++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~   79 (284)
T PRK14190          1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELL   79 (284)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            34679999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~  157 (284)
T PRK14190         80 ALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDIS  157 (284)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|+++||+++|||||+||++|+++++++++|||||+|+|+|++|+++|||+|++|||+|+|+.++ 
T Consensus       158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~~-  236 (284)
T PRK14190        158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLEN-  236 (284)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999754 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                          | |++|||||+++.++|++||||||||||||++|||+|+++++++|.+
T Consensus       237 ----g-kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~  283 (284)
T PRK14190        237 ----G-KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGG  283 (284)
T ss_pred             ----C-CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence                2 8999999999999999999999999999999999999999998865

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.7e-90  Score=668.40  Aligned_cols=277  Identities=42%  Similarity=0.738  Sum_probs=267.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|+++++++++++++|+++...+|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~ildGk~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   81 (278)
T PRK14172          2 GQIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINE   81 (278)
T ss_pred             CeEEeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57999999999999999999999987733569999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+++.|  .++|+||||+||+++|++|+++++||
T Consensus        82 I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~Gk  159 (278)
T PRK14172         82 IEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGK  159 (278)
T ss_pred             HHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999987  57899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+||++++++|||||+|+|+|++|+++|||+|++|||+|+|+.++   
T Consensus       160 ~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~g---  236 (278)
T PRK14172        160 EVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG---  236 (278)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999642   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHH
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~  369 (375)
                          |++|||||+++.++|++||||||||||||++|||+|++++++
T Consensus       237 ----kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  278 (278)
T PRK14172        237 ----KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK  278 (278)
T ss_pred             ----ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence                899999999999999999999999999999999999999864

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.3e-90  Score=668.80  Aligned_cols=279  Identities=47%  Similarity=0.775  Sum_probs=271.0

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|++++++++++|+++.+.+|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++++|++
T Consensus         1 ~~~~ildGk~ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~   80 (284)
T PRK14177          1 MSPILLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELL   80 (284)
T ss_pred             CCCeEeEhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            56789999999999999999999999988778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~  158 (284)
T PRK14177         81 GVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVT  158 (284)
T ss_pred             HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|+++++||||+|++|||+|+|+    
T Consensus       159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~----  234 (284)
T PRK14177        159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP----  234 (284)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987    


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                            +++|||||+++.++|++||||||||||||++|||+|+++++++..
T Consensus       235 ------~~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  279 (284)
T PRK14177        235 ------GNVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF  279 (284)
T ss_pred             ------cccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence                  479999999999999999999999999999999999999997654

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.2e-90  Score=668.01  Aligned_cols=280  Identities=52%  Similarity=0.837  Sum_probs=272.3

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I   81 (286)
T PRK14184          2 LLLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLI   81 (286)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.||+++|++|+++++||+
T Consensus        82 ~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~  159 (286)
T PRK14184         82 AELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKK  159 (286)
T ss_pred             HHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999976  578999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhh----CCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQR----EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~----~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+|||||++||+|+++||++    +|||||+||++|+++++++++|||||+|+|+|++|+++|+|+|++|||+|+|+.++
T Consensus       160 vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~~  239 (286)
T PRK14184        160 AVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDD  239 (286)
T ss_pred             EEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccCC
Confidence            99999999999999999999    89999999999999999999999999999999999999999999999999999743


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                             +++|||||+++.++|++||||||||||||++|||+|+++++++..|
T Consensus       240 -------~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~  285 (286)
T PRK14184        240 -------GLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERVG  285 (286)
T ss_pred             -------CccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhC
Confidence                   6999999999999999999999999999999999999999987665

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.7e-90  Score=665.41  Aligned_cols=280  Identities=46%  Similarity=0.795  Sum_probs=271.1

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      .+||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++++|+++.|
T Consensus         2 ~ildGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I   81 (282)
T PRK14180          2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELI   81 (282)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999999887789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+++.|+ ..+|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~  160 (282)
T PRK14180         82 DQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAY  160 (282)
T ss_pred             HHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999763 368999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||+|+++||.++|||||+||++|+||++++++|||||+|+|+|++++++|||+|++|||+|+|+.++    
T Consensus       161 vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~g----  236 (282)
T PRK14180        161 AVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----  236 (282)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999632    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                         |++|||||+++.++|+++|||||||||||++|||+|++++++++.
T Consensus       237 ---kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  281 (282)
T PRK14180        237 ---KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  281 (282)
T ss_pred             ---ceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHhc
Confidence               899999999999999999999999999999999999999998764

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-89  Score=668.10  Aligned_cols=286  Identities=51%  Similarity=0.830  Sum_probs=274.1

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   81 (297)
T PRK14186          2 ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEAL   81 (297)
T ss_pred             CEEeehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57999999999999999999999988878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  ...|+||||.||+++|++|+++++||
T Consensus        82 I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk  159 (297)
T PRK14186         82 IAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAGK  159 (297)
T ss_pred             HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  46799999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++++++|||+|++|||+|+|+.+++ +
T Consensus       160 ~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~-~  238 (297)
T PRK14186        160 KAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSS-D  238 (297)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999996432 1


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                      .+| |++|||||+++.++|++||||||||||||++|||+|+++++++..+
T Consensus       239 ~~g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~  287 (297)
T PRK14186        239 GKT-RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG  287 (297)
T ss_pred             cCC-ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            124 8999999999999999999999999999999999999999987653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.3e-89  Score=662.82  Aligned_cols=278  Identities=53%  Similarity=0.880  Sum_probs=269.9

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I   81 (281)
T PRK14183          2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETI   81 (281)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999999874489999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+++.|  +++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~  159 (281)
T PRK14183         82 AMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKD  159 (281)
T ss_pred             HHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999986  578999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||+|+++||+++|||||+||++|+||++++++|||||+|+|+|++++++|||+|++|||+|+|+.++    
T Consensus       160 vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~----  235 (281)
T PRK14183        160 VCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTED----  235 (281)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999644    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHH
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR  370 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~  370 (375)
                       | |++|||||+++.+++++||||||||||||++|||+|+++++++
T Consensus       236 -g-kl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~  279 (281)
T PRK14183        236 -G-RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKN  279 (281)
T ss_pred             -C-CeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHh
Confidence             2 8999999999999999999999999999999999999999975

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1e-89  Score=665.21  Aligned_cols=280  Identities=47%  Similarity=0.787  Sum_probs=267.8

Q ss_pred             eeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 017184           86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHIS  165 (375)
Q Consensus        86 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~  165 (375)
                      +||||++|++|++++++++++|    +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|+
T Consensus         2 ildGk~iA~~i~~~~k~~v~~l----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~   77 (287)
T PRK14181          2 LLKGAPAAEHILATIKENISAS----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIH   77 (287)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7999999999999999999988    679999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEE
Q 017184          166 VFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRA  245 (375)
Q Consensus       166 ~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~v  245 (375)
                      +||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+ .++|+||||+||+++|++|+++++||+|
T Consensus        78 ~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~v  156 (287)
T PRK14181         78 RLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRHV  156 (287)
T ss_pred             HHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEE
Confidence            999999999999999999999999999999999999999999999999863 4679999999999999999999999999


Q ss_pred             EEEcCCcccHHHHHHHHhhC----CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          246 VVIGRSNIVGMPAALLLQRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       246 vVIGrs~~VGkpla~lL~~~----gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      +|||||++||||+++||+++    |||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|++.+.
T Consensus       157 vViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~~  236 (287)
T PRK14181        157 AIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAA  236 (287)
T ss_pred             EEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccc
Confidence            99999999999999999999    89999999999999999999999999999999999999999999999999996431


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV  371 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~  371 (375)
                       ..+|+|++|||||+++.++|+|+|||||||||||++|||+|++++++++
T Consensus       237 -~~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  285 (287)
T PRK14181        237 -NPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRH  285 (287)
T ss_pred             -cCCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhh
Confidence             1224589999999999999999999999999999999999999999865

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.6e-89  Score=663.59  Aligned_cols=284  Identities=54%  Similarity=0.878  Sum_probs=275.0

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|+++++++++++++|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 M~~~ildGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~   80 (285)
T PRK10792          1 MTAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELL   80 (285)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            34679999999999999999999999888788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.||+++|++|+++++
T Consensus        81 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~  158 (285)
T PRK10792         81 ALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTY  158 (285)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|++++|+++|||||+||++|+||++++++|||||+|+|+|++|+++|+|+|++|||+|+|+.++ 
T Consensus       159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~-  237 (285)
T PRK10792        159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLED-  237 (285)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999754 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                          | |++|||||+++.++|+++|||||||||||++|||+|+++++++|++
T Consensus       238 ----g-k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        238 ----G-KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             ----C-CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence                2 7999999999999999999999999999999999999999999975

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.1e-89  Score=662.52  Aligned_cols=280  Identities=46%  Similarity=0.831  Sum_probs=270.1

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      ++.+||||++|++|+++++++++.|+++ |++|+||+|+||+|++|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         2 ~~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~   80 (284)
T PRK14193          2 TAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNA   80 (284)
T ss_pred             CCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            3578999999999999999999999877 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCC
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      .|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  ...|+||||+||+++|++|+++++|
T Consensus        81 ~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~G  158 (284)
T PRK14193         81 VIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELAG  158 (284)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999976  5679999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhh--CCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~--~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+|+|||||++||+|+++||++  +|||||+||++|+|+++++++|||||+|+|+|++|+++|||+|++|||+|+|+..+
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~~  238 (284)
T PRK14193        159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD  238 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccCC
Confidence            9999999999999999999998  79999999999999999999999999999999999999999999999999999644


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                           | |++|||| +++.++|++||||||||||||++|||+|+++++++..
T Consensus       239 -----g-kl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  283 (284)
T PRK14193        239 -----G-KLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRA  283 (284)
T ss_pred             -----C-cEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHhh
Confidence                 2 8999999 8899999999999999999999999999999998654

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.3e-89  Score=660.99  Aligned_cols=283  Identities=52%  Similarity=0.846  Sum_probs=273.6

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         1 M~~~ildGk~va~~i~~~lk~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~   79 (285)
T PRK14189          1 MTAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELL   79 (285)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            44679999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+++.|  .++|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~  157 (285)
T PRK14189         80 ARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLR  157 (285)
T ss_pred             HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|++++|.++|||||+||++|+|+++++++|||||+|+|+|++++++|+|+|++|||+|+|+..+ 
T Consensus       158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~-  236 (285)
T PRK14189        158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDA-  236 (285)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999644 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                          | |++|||||+++.++|+++|||||||||||++|||+|++++++++..
T Consensus       237 ----g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~  283 (285)
T PRK14189        237 ----G-KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA  283 (285)
T ss_pred             ----C-CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence                2 8999999999999999999999999999999999999999998764

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.1e-89  Score=661.00  Aligned_cols=279  Identities=48%  Similarity=0.813  Sum_probs=271.0

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|+++++++++.|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         8 ~~ildGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   87 (287)
T PRK14176          8 SRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLEL   87 (287)
T ss_pred             eEEEEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            68999999999999999999999988778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  +++|+||||+||+++|++|+++++||
T Consensus        88 I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~Gk  165 (287)
T PRK14176         88 IDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEGK  165 (287)
T ss_pred             HHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  56899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|++++|+++|||||+||++|+|+++++++|||||+|+|+|++|+++|+|+|++|||+|+|+.+    
T Consensus       166 ~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~----  241 (287)
T PRK14176        166 NAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE----  241 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999853    


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV  371 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~  371 (375)
                        | |++|||||+.+.++|+++|||||||||||++|||+|+++++++.
T Consensus       242 --g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~  286 (287)
T PRK14176        242 --D-KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS  286 (287)
T ss_pred             --C-CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence              2 89999999999999999999999999999999999999998754

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.2e-88  Score=657.52  Aligned_cols=280  Identities=49%  Similarity=0.783  Sum_probs=271.9

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|+++.|++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~il~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I   81 (285)
T PRK14191          2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLI   81 (285)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999999877789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~  159 (285)
T PRK14191         82 KDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKD  159 (285)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999977  578999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||+|++++|+++|||||+||++|+||.+++++|||||+|+|+|++++++|||+|++|||+|+|++++    
T Consensus       160 vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~----  235 (285)
T PRK14191        160 VVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLND----  235 (285)
T ss_pred             EEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999754    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                       | |++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus       236 -g-klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~  281 (285)
T PRK14191        236 -G-RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQ  281 (285)
T ss_pred             -C-ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence             2 899999999999999999999999999999999999999998654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.4e-88  Score=654.41  Aligned_cols=281  Identities=52%  Similarity=0.885  Sum_probs=273.7

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++|+++++++++.|++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~ildGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~   81 (284)
T PRK14179          2 TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDL   81 (284)
T ss_pred             CeEEEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57999999999999999999999988878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+|+.|  +++|+||||.||+++|++|+++++||
T Consensus        82 I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk  159 (284)
T PRK14179         82 IERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEGK  159 (284)
T ss_pred             HHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  67899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||+|++||+|++++|+++|||||+||++|+++++++++|||||+++|+|++++++|+++|++|||+|+|+..+   
T Consensus       160 ~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~---  236 (284)
T PRK14179        160 HAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDEN---  236 (284)
T ss_pred             EEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999654   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        | |++|||||+++.++|++||||||||||||++|||+|+++++++|.
T Consensus       237 --g-kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (284)
T PRK14179        237 --G-KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSL  282 (284)
T ss_pred             --C-CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence              2 899999999999999999999999999999999999999999986

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3e-88  Score=655.32  Aligned_cols=280  Identities=49%  Similarity=0.821  Sum_probs=266.8

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|++++++++++|    +++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 m~~~il~Gk~vA~~i~~~l~~~v~~l----~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   76 (287)
T PRK14173          1 MAARELSGPPAAEAVYAELRARLAKL----PFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELL   76 (287)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            44579999999999999999999988    47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .+.|+||||+||+++|++|+++++
T Consensus        77 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~  154 (287)
T PRK14173         77 ELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLA  154 (287)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  467999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|+++||+++|||||+||++|+|+++++++|||||+|+|+|++++++|||+|++|||+|+|++.+.
T Consensus       155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~~  234 (287)
T PRK14173        155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGN  234 (287)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996210


Q ss_pred             CCCCCce--eecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          322 KSPRGYR--LVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       322 ~~~~g~k--l~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                         +| |  ++|||| +++.++|+++|||||||||||++|||+|+++++++..
T Consensus       235 ---~g-k~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (287)
T PRK14173        235 ---GG-RDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRR  282 (287)
T ss_pred             ---CC-ceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence               13 5  999999 6889999999999999999999999999999998654

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.5e-88  Score=655.01  Aligned_cols=288  Identities=54%  Similarity=0.876  Sum_probs=274.7

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      .+||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~il~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I   81 (295)
T PRK14174          2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKI   81 (295)
T ss_pred             EEEeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999999888789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~  161 (295)
T PRK14174         82 EDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKH  161 (295)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence            99999999999999999999999999999999999999999999999998753478999999999999999999999999


Q ss_pred             EEEEcCCcccHHHHHHHHhh----CCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQR----EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~----~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+|||||++||+|+++||++    +|+||++||++|+++++++++|||||+|+|+|++|+++|+|+|++|||+|+++.++
T Consensus       162 vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~~  241 (295)
T PRK14174        162 CVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIED  241 (295)
T ss_pred             EEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeecccccc
Confidence            99999999999999999998    78999999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                      +++..|+|++|||||+++.++|++||||||||||||++|||+|+++++++..
T Consensus       242 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  293 (295)
T PRK14174        242 PSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVN  293 (295)
T ss_pred             ccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3333455899999999999999999999999999999999999999998754

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.6e-87  Score=650.56  Aligned_cols=284  Identities=51%  Similarity=0.840  Sum_probs=273.5

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|+++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         1 m~~~il~Gk~ia~~i~~~~~~~v~~l~~~-g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~   79 (286)
T PRK14175          1 MVAKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVL   79 (286)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            34579999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.||+++|++|+++++
T Consensus        80 ~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~  157 (286)
T PRK14175         80 NELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLE  157 (286)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|++++|.++|||||+|||+|+++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++..+ 
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~-  236 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDEN-  236 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998544 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                          | |++|||||+++.++++++|||||||||||++|||+|+++++++..++
T Consensus       237 ----g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~~~  284 (286)
T PRK14175        237 ----G-KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGI  284 (286)
T ss_pred             ----C-CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence                3 89999999999999999999999999999999999999999876654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.7e-87  Score=649.18  Aligned_cols=286  Identities=52%  Similarity=0.862  Sum_probs=274.6

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |.+++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         2 m~~~il~Gk~iA~~i~~~lk~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~   80 (301)
T PRK14194          2 MSAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLL   80 (301)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            44679999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.||+++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~  158 (301)
T PRK14194         81 ALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLT  158 (301)
T ss_pred             HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  578999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||+|++||+|++.+|+++|++||+|||+|+++++++++|||||+++|.|++++++|+|+|++|||+|+|++.+.
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~~  238 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD  238 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996431


Q ss_pred             CCCCC-ceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          322 KSPRG-YRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       322 ~~~~g-~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                          | +|++|||||+++.++|+++|||||||||||++|||+|+++++++|+..
T Consensus       239 ----g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~~  288 (301)
T PRK14194        239 ----GRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHA  288 (301)
T ss_pred             ----CCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence                2 279999999999999999999999999999999999999999998753

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.3e-86  Score=640.01  Aligned_cols=273  Identities=51%  Similarity=0.847  Sum_probs=265.7

Q ss_pred             eeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 017184           86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHIS  165 (375)
Q Consensus        86 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~  165 (375)
                      +||||++|++|+++++++++++    |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|+
T Consensus         2 il~Gk~~a~~i~~~~~~~v~~l----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~   77 (279)
T PRK14178          2 ILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIR   77 (279)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7999999999999999999987    789999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEE
Q 017184          166 VFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRA  245 (375)
Q Consensus       166 ~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~v  245 (375)
                      +||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||.|++++|++|+++++||+|
T Consensus        78 ~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~V  155 (279)
T PRK14178         78 RLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKRA  155 (279)
T ss_pred             HHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999976  5789999999999999999999999999


Q ss_pred             EEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCC
Q 017184          246 VVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR  325 (375)
Q Consensus       246 vVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~  325 (375)
                      +|||||..||+|++++|.++||+||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++.+      
T Consensus       156 ~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~------  229 (279)
T PRK14178        156 VVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVN------  229 (279)
T ss_pred             EEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccC------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999863      


Q ss_pred             CceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 017184          326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV  371 (375)
Q Consensus       326 g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~  371 (375)
                      | |++|||||+++.++++++|||||||||||++|||+|+++++++.
T Consensus       230 g-kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  274 (279)
T PRK14178        230 G-KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR  274 (279)
T ss_pred             C-CCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            2 89999999999999999999999999999999999999999764

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=6.3e-86  Score=671.62  Aligned_cols=291  Identities=54%  Similarity=0.903  Sum_probs=285.6

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhcc-CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEV  160 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el  160 (375)
                      |.+.||+||++|+++|++++++++.+|+.. +++|.|+|||||++++|+.|+|+|.|+++++||++.+++||++++|-||
T Consensus         1 ~~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~el   80 (935)
T KOG4230|consen    1 MVAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGEL   80 (935)
T ss_pred             CcchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHH
Confidence            457899999999999999999999999887 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCC
Q 017184          161 LKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDI  240 (375)
Q Consensus       161 ~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l  240 (375)
                      +.+|.+||+|+.||||+||+|||.|+|++.+.++|+|+||||||+..|.|+|..++.++.|+||||.|||++|+++++.+
T Consensus        81 l~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v  160 (935)
T KOG4230|consen   81 LREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFV  160 (935)
T ss_pred             HHHHHhccCCCccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      .||++||+|||.+||.|++.+|.+.|+|||+|||+|+++.+++.+|||||.|+|.|+||+.||+|||++|||||+|++.|
T Consensus       161 ~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD  240 (935)
T KOG4230|consen  161 AGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPD  240 (935)
T ss_pred             ccceeEEEecccccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                      +++..|+|++|||||+++.+++++||||||||||||+||||+|++++++|+.
T Consensus       241 ~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r  292 (935)
T KOG4230|consen  241 PSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQR  292 (935)
T ss_pred             CCCcccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.3e-84  Score=631.67  Aligned_cols=287  Identities=56%  Similarity=0.913  Sum_probs=272.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++|+++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus         2 ~~il~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   81 (296)
T PRK14188          2 ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLAL   81 (296)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            57899999999999999999999987778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|+|+++.|  .++|+||||+||+++|++|+++++||
T Consensus        82 i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~Gk  159 (296)
T PRK14188         82 IARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSGL  159 (296)
T ss_pred             HHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  57899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||+.||+|+|.+|+++|++|++||++|+++++++++|||||+++|.|++++++|+++|++|||+|+|++.+..+
T Consensus       160 ~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~~~~  239 (296)
T PRK14188        160 NAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK  239 (296)
T ss_pred             EEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999642111


Q ss_pred             CCCc-eeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGY-RLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                      ..|+ |++|||||+++.++|++||||||||||||++|||+|+++++++..
T Consensus       240 ~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  289 (296)
T PRK14188        240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA  289 (296)
T ss_pred             cCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            1133 799999999999999999999999999999999999999998753

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.9e-81  Score=603.62  Aligned_cols=282  Identities=48%  Similarity=0.804  Sum_probs=272.1

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      ++++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|+++|+++||+++|+.||++++++||++
T Consensus         2 ~~~~l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~   81 (283)
T PRK14192          2 MALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLA   81 (283)
T ss_pred             CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            35799999999999999999999999887899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCC
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      .|++||+|++||||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  ++.|.||||.|++++|++|+++++|
T Consensus        82 ~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~G  159 (283)
T PRK14192         82 KIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAG  159 (283)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999876  5789999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK  322 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~  322 (375)
                      |+|+|||||++||+|++++|+++||+||+|||++++|.+.+++|||||+|+|+|++++.+|+++|++|||+|||+.++  
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~--  237 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG--  237 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC--
Confidence            999999999988999999999999999999999999999999999999999999999999999999999999999753  


Q ss_pred             CCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       323 ~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                           +++|||||+++.++++++|||||||||||++|||+|+++++++.+|
T Consensus       238 -----~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~~  283 (283)
T PRK14192        238 -----GGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG  283 (283)
T ss_pred             -----CCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence                 5899999999999999999999999999999999999999988654

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.1e-79  Score=582.65  Aligned_cols=293  Identities=62%  Similarity=0.935  Sum_probs=282.4

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      .+.+++||.+|+.+++++..+++.+++..|..|+|+.++||+||+|+.|+.+|.|+|+++||.++.+.||+..+++++++
T Consensus         7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~   86 (309)
T KOG0089|consen    7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELES   86 (309)
T ss_pred             ceEEEehhHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHH
Confidence            36899999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCC
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      .|.++|+|++||||+||+|+|.|++++.|++.++|+|||||+|+.|.|+|.+.++.+.|+||||.||+|+|+++++.+.|
T Consensus        87 ~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~G  166 (309)
T KOG0089|consen   87 AIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYG  166 (309)
T ss_pred             HHHHhcCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecC
Confidence            99999999999999999999999999999999999999999999999999887777889999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC--------CCeEEEEcCCCCC--HHhhccCCcEEEEccCCCCcccCCCcCCCcEEEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE--------DATVSIVHSRTKN--PEEITRQADIIISAVGQPNMVRGSWIKPGAVIID  312 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~--------gAtVtv~hs~t~~--L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVID  312 (375)
                      |+++|+|||++||+|+|++|++.        .||||++||.|++  ++.++++|||+|+|+|.|++|+.||+|+|+.|||
T Consensus       167 Kn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vid  246 (309)
T KOG0089|consen  167 KNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVID  246 (309)
T ss_pred             ceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEe
Confidence            99999999999999999999998        6899999999965  5899999999999999999999999999999999


Q ss_pred             eeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          313 VGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       313 vgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      +|+|++.++++..++||+|||||+++.++|++||||||||||||+||||+|+++++++.+.++
T Consensus       247 vgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~~~  309 (309)
T KOG0089|consen  247 VGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFLSK  309 (309)
T ss_pred             cCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhccC
Confidence            999999998877788999999999999999999999999999999999999999999887653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=4.1e-53  Score=379.83  Aligned_cols=160  Identities=62%  Similarity=1.018  Sum_probs=138.9

Q ss_pred             ccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhcc
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITR  284 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~  284 (375)
                      ||+|+|+|+.|  +++|+||||+|++++|++|+++++||+|+|||||++||+|++++|.++|||||+||++|++++++++
T Consensus         1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~   78 (160)
T PF02882_consen    1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR   78 (160)
T ss_dssp             SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred             CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence            79999999987  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHH
Q 017184          285 QADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNT  364 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~  364 (375)
                      +|||||+|+|+|++|+++|||||++|||+|+++...     +++++|||||++++++++++|||||||||||++|||+|+
T Consensus        79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~-----~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~  153 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPG-----DGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNL  153 (160)
T ss_dssp             TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETT-----TTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred             eccEEeeeeccccccccccccCCcEEEecCCccccc-----cceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999821     239999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 017184          365 LTSAKRV  371 (375)
Q Consensus       365 v~a~~~~  371 (375)
                      +++++++
T Consensus       154 v~a~~~~  160 (160)
T PF02882_consen  154 VKAAKRQ  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=100.00  E-value=7e-48  Score=354.53  Aligned_cols=158  Identities=34%  Similarity=0.483  Sum_probs=145.2

Q ss_pred             cccccCccccchhhhcccCCC-------ccccccCCHHHHHHHHHHhCC---------CCCCCEEEEEcCCcccHHHHHH
Q 017184          197 MEKDVDGFHPLNIGRLAMRGR-------EPLFIPCTPKGCIELLHRYGF---------DIKGKRAVVIGRSNIVGMPAAL  260 (375)
Q Consensus       197 p~KDVDGl~~~N~G~l~~g~~-------~~~~~PcT~~gvi~lL~~~~i---------~l~GK~vvVIGrs~~VGkpla~  260 (375)
                      |+|||||+|+.|+|+|+.|..       .++|+||||+||+++|++|++         +++||+|+|||||++||+|+++
T Consensus         1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~   80 (197)
T cd01079           1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA   80 (197)
T ss_pred             CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence            789999999999999987631       158999999999999999977         8999999999999999999999


Q ss_pred             HHhhCCCeEEEE---------------cCCC--CC----HHhhccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecCC
Q 017184          261 LLQREDATVSIV---------------HSRT--KN----PEEITRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       261 lL~~~gAtVtv~---------------hs~t--~~----L~~~l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~~  318 (375)
                      ||+++|||||+|               |++|  +|    +.+++++|||||+|+|+|++ |++||||+|++|||||++. 
T Consensus        81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~-  159 (197)
T cd01079          81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK-  159 (197)
T ss_pred             HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence            999999999999               6777  46    88999999999999999999 9999999999999999874 


Q ss_pred             CCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       319 ~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                                   |+| +++.++|+++|||   |||||++|||+|+++++++++
T Consensus       160 -------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~~  196 (197)
T cd01079         160 -------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQH  196 (197)
T ss_pred             -------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHhc
Confidence                         455 6789999999998   999999999999999998765

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=3.9e-41  Score=296.39  Aligned_cols=137  Identities=36%  Similarity=0.599  Sum_probs=129.9

Q ss_pred             CccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCC
Q 017184          217 REPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       217 ~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p  296 (375)
                      .++.|+||||+|++++|++|+++++||+|+|+|||..+|+|++.+|.++|++|++||++|+++++++++|||||+|+|+|
T Consensus         3 ~~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212           3 CTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          297 NMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       297 ~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++|+++|+|||++|||+|+++.               +|+++.++++++|||||||||||++|||+|+++++
T Consensus        83 ~~i~~~~ikpGa~Vidvg~~~~---------------~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~  139 (140)
T cd05212          83 EKVPTEWIKPGATVINCSPTKL---------------SGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV  139 (140)
T ss_pred             CccCHHHcCCCCEEEEcCCCcc---------------cchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence            9999999999999999998862               14567889999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=4.9e-41  Score=303.80  Aligned_cols=168  Identities=64%  Similarity=1.041  Sum_probs=158.0

Q ss_pred             cccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          197 MEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       197 p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+|||||++..|.|+++.+  ...|+|||+.+++++++++..+++||+|+|||+|+++|++++.+|.++|++|++++|++
T Consensus         1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080           1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            6899999999999999865  57899999999999999999999999999999999889999999999999999999999


Q ss_pred             CCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHH
Q 017184          277 KNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMT  356 (375)
Q Consensus       277 ~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T  356 (375)
                      .++.+.+++|||||+|+|+|++|+.+|++++.++||++.+++.+  +.+| |++||+||+.+.+++.++||+||||||+|
T Consensus        79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd--~~~~-~~~G~~d~~~~~~~~~~~~~~pggvgp~t  155 (168)
T cd01080          79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD--KSGG-KLVGDVDFESAKEKASAITPVPGGVGPMT  155 (168)
T ss_pred             hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCccc--ccCC-CeeCCcCHHHHHhhccCcCCCCCcChHHH
Confidence            99999999999999999999999999999999999999999765  2234 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 017184          357 IAMLLSNTLTSAK  369 (375)
Q Consensus       357 ~amLl~N~v~a~~  369 (375)
                      +++||+|++++++
T Consensus       156 ~a~l~~n~~~~~~  168 (168)
T cd01080         156 VAMLMKNTVEAAK  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=2.9e-34  Score=245.34  Aligned_cols=117  Identities=56%  Similarity=0.905  Sum_probs=103.4

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++|+||++|++|+++++++++.|+++ |++|+|++|+||+|++|..|+++|.|.|+++||+++.+.||++++++|+++.|
T Consensus         1 ~iL~Gk~va~~i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   79 (117)
T PF00763_consen    1 KILDGKPVAKEIKEELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELI   79 (117)
T ss_dssp             EE--HHHHHHHHHHHHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHH
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHH
Confidence            48999999999999999999999988 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccC
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD  202 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVD  202 (375)
                      ++||+|++||||+||+|||+|+++.+++++|+|+||||
T Consensus        80 ~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD  117 (117)
T PF00763_consen   80 EKLNEDPSVHGILVQLPLPKHIDERKILEAIDPEKDVD  117 (117)
T ss_dssp             HHHHH-TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred             HHHhCCCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence            99999999999999999999999999999999999998

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=99.90  E-value=1e-22  Score=197.87  Aligned_cols=225  Identities=16%  Similarity=0.168  Sum_probs=172.8

Q ss_pred             EEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC---CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhC
Q 017184          119 VILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED---TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAV  195 (375)
Q Consensus       119 iI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~---vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I  195 (375)
                      .-++|+.-+--.-=..-+.+++++|+++.|..|+-+   +++++|.+.++.+.. .++.|++|++|++.  ...++++.+
T Consensus         8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~~D~~   84 (284)
T PRK12549          8 AGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCKQ--AVIPHLDEL   84 (284)
T ss_pred             EEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCHH--HHHHHhccC
Confidence            345675433333344667899999999999999632   357889999999875 48999999999987  456778888


Q ss_pred             Cc-ccccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEE
Q 017184          196 SM-EKDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSI  271 (375)
Q Consensus       196 ~p-~KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv  271 (375)
                      +| .+.+.+++.+ + -|++. |+++|+      .|+++.|+....++++|+|+|||+|++ |++++..|...|+ +|++
T Consensus        85 ~~~A~~iGAvNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I  156 (284)
T PRK12549         85 SDDARALGAVNTVVFRDGRRI-GHNTDW------SGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTI  156 (284)
T ss_pred             CHHHHHhCCceEEEecCCEEE-EEcCCH------HHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEE
Confidence            88 7777776432 3 34443 554544      999999998777899999999999997 9999999999997 7999


Q ss_pred             EcCCCC----------------------CHHhhccCCcEEEEccCC-----CC-cccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          272 VHSRTK----------------------NPEEITRQADIIISAVGQ-----PN-MVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       272 ~hs~t~----------------------~L~~~l~~ADIVIsAvG~-----p~-~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      ++|+..                      ++.+.++++|+||++++.     +. .++.++++++.+|+|+.|+|.+|   
T Consensus       157 ~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T---  233 (284)
T PRK12549        157 FDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET---  233 (284)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC---
Confidence            998631                      223356789999999642     22 36678899999999999999877   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                          +|+.      .++..|+  ++-+|.+     ||++|.+.+++.|+|.
T Consensus       234 ----~ll~------~A~~~G~--~~~~G~~-----ML~~Qa~~~f~~wtg~  267 (284)
T PRK12549        234 ----ELLR------AARALGC--RTLDGGG-----MAVFQAVDAFELFTGR  267 (284)
T ss_pred             ----HHHH------HHHHCCC--eEecCHH-----HHHHHHHHHHHHhcCC
Confidence                4554      3566776  4566777     9999999999999985

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=99.89  E-value=2.3e-22  Score=195.59  Aligned_cols=222  Identities=20%  Similarity=0.284  Sum_probs=170.7

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          120 ILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       120 I~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      -++|+.-+--.-=..-+.+++++|+++.|..|+  +.+++|.+.++.+.. .++.|++|++|||.  ...++++.++| .
T Consensus        13 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~v~~~ld~~~~~A   87 (289)
T PRK12548         13 GLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFD--IPVDKVPDAIKAIKT-FNMRGANVTMPCKS--EAAKYMDELSPAA   87 (289)
T ss_pred             EEEcCCcccccCHHHHHHHHHHcCCCEEEEEEe--cCHHHHHHHHHHHHH-CCCCEEEECccCHH--HHHHHhhcCCHHH
Confidence            356764322222335677899999999999996  678899999999986 47999999999987  55778888888 6


Q ss_pred             cccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCC
Q 017184          199 KDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSR  275 (375)
Q Consensus       199 KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~  275 (375)
                      +-+.+++.+ + -|++. |+++|+      .|+++.|++++.+++||+++|+|+|++ |++++..|...|+. |++++|+
T Consensus        88 ~~iGavNTi~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548         88 RIIGAVNTIVNDDGKLT-GHITDG------LGFVRNLREHGVDVKGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             HHhCceeEEEeECCEEE-EEecCH------HHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            776666332 2 34543 555554      999999999888999999999999997 99999999999985 9999886


Q ss_pred             C---CC---------------------------HHhhccCCcEEEEccC---CCC----cc-cCCCcCCCcEEEEeeecC
Q 017184          276 T---KN---------------------------PEEITRQADIIISAVG---QPN----MV-RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       276 t---~~---------------------------L~~~l~~ADIVIsAvG---~p~----~I-~~~~vk~gavVIDvgin~  317 (375)
                      .   ..                           +.+.+..+|+||++++   .|+    .+ +.+++.++.+|+|+.|+|
T Consensus       160 ~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P  239 (289)
T PRK12548        160 DDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNP  239 (289)
T ss_pred             chHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCC
Confidence            3   10                           1123356899998885   232    24 456889999999999999


Q ss_pred             CCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       318 ~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .+|       +|+.      .++..|+  ++-+|.+     ||++|.+++++.|+|.
T Consensus       240 ~~T-------~ll~------~A~~~G~--~~~~G~~-----ML~~Qa~~~f~lwtg~  276 (289)
T PRK12548        240 KKT-------KLLE------DAEAAGC--KTVGGLG-----MLLWQGAEAYKLYTGK  276 (289)
T ss_pred             CCC-------HHHH------HHHHCCC--eeeCcHH-----HHHHHHHHHHHHhcCC
Confidence            877       4655      3566776  5667777     9999999999999985

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=99.88  E-value=3.2e-22  Score=195.01  Aligned_cols=221  Identities=19%  Similarity=0.216  Sum_probs=169.6

Q ss_pred             EeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-cc
Q 017184          121 LVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EK  199 (375)
Q Consensus       121 ~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~K  199 (375)
                      ++|+.-+--.-=..-+.++++.|+++.|..++  +.+++|.+.++.++.. ++.|++|++|+|.  ....+++.+++ .|
T Consensus        12 liG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~l~~~-~~~G~nVTiP~K~--~~~~~~D~l~~~A~   86 (288)
T PRK12749         12 LMAYPIRHSLSPEMQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKAL-KMRGTGVSMPNKQ--LACEYVDELTPAAK   86 (288)
T ss_pred             EECCCcccccCHHHHHHHHHHcCCCeEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHH--HHHHHhccCCHHHH
Confidence            45653322223346688999999999999996  7788999999999764 7999999999987  55678888888 77


Q ss_pred             ccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          200 DVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       200 DVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      .+.+++.+ + -|++. |+++|      ..|+++.|++.+++++||+++|+|+|++ +|+++..|...|+ +|+|++|+.
T Consensus        87 ~iGAVNTv~~~~g~l~-G~NTD------~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749         87 LVGAINTIVNDDGYLR-GYNTD------GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             HhCceeEEEccCCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCc
Confidence            77776433 2 34443 55444      4999999999999999999999999998 9999999999996 899999873


Q ss_pred             C------CH-----------------------HhhccCCcEEEEccCC---CC----c-ccCCCcCCCcEEEEeeecCCC
Q 017184          277 K------NP-----------------------EEITRQADIIISAVGQ---PN----M-VRGSWIKPGAVIIDVGINPVE  319 (375)
Q Consensus       277 ~------~L-----------------------~~~l~~ADIVIsAvG~---p~----~-I~~~~vk~gavVIDvgin~~~  319 (375)
                      .      .|                       .+.++++|+||++++.   |+    . ++.++++++.+|+|+.|+|.+
T Consensus       159 ~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~  238 (288)
T PRK12749        159 EFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM  238 (288)
T ss_pred             cHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCcc
Confidence            1      01                       1134578999998863   32    1 244568899999999999987


Q ss_pred             CCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       320 ~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      |       +|+.      .++..|+  ++-+|.+     ||++|.+++++.|+|.
T Consensus       239 T-------~ll~------~A~~~G~--~~~~Gl~-----ML~~Qa~~~f~lwtg~  273 (288)
T PRK12749        239 T-------KLLQ------QAQQAGC--KTIDGYG-----MLLWQGAEQFTLWTGK  273 (288)
T ss_pred             C-------HHHH------HHHHCCC--eEECCHH-----HHHHHHHHHHHHhcCC
Confidence            7       4665      3566776  4556676     9999999999999985

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=99.88  E-value=3e-22  Score=193.42  Aligned_cols=208  Identities=19%  Similarity=0.291  Sum_probs=166.2

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h-hh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N-IG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N-~G  210 (375)
                      .-+.+++++|+++.|..|.  +.+++|.+.++.+... ++.|++|++|++.  +..++++.++| .+.+..++.+ + -|
T Consensus        23 ~hn~~~~~~gl~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~~d~~~~~A~~igavNtv~~~~g   97 (278)
T PRK00258         23 IHNAAFKQLGLDGVYLAIL--VPPEDLEDAVKGFFAL-GGRGANVTVPFKE--AAFALADELSERARLIGAVNTLVLEDG   97 (278)
T ss_pred             HHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhC-CCCEEEECcCCHH--HHHHHhhcCCHHHHHhCCceEEEeeCC
Confidence            4588999999999999985  6778999999999875 7999999999987  55778888888 7777776433 3 23


Q ss_pred             hcccCCCccccccCCHHHHHHHHHH-hCCCCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCCC----------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHR-YGFDIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTKN----------  278 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~-~~i~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~~----------  278 (375)
                      ++. |+      +++..|+++.|++ .+.++++|+|+|+|+|++ |+.++..|...| ++|++++|+...          
T Consensus        98 ~l~-G~------NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~  169 (278)
T PRK00258         98 RLI-GD------NTDGIGFVRALEERLGVDLKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA  169 (278)
T ss_pred             EEE-EE------cccHHHHHHHHHhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            333 44      4455999999986 578999999999999996 999999999999 689999986321          


Q ss_pred             ---------HHhhccCCcEEEEccCCCC-------cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhc
Q 017184          279 ---------PEEITRQADIIISAVGQPN-------MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVA  342 (375)
Q Consensus       279 ---------L~~~l~~ADIVIsAvG~p~-------~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a  342 (375)
                               +.+.+.++||||++++...       .+..++++++.+|+|+.|+|.++       .|..      .+++.
T Consensus       170 ~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T-------~ll~------~A~~~  236 (278)
T PRK00258        170 LGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPT-------PFLA------WAKAQ  236 (278)
T ss_pred             ccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCC-------HHHH------HHHHC
Confidence                     1234578999999997431       24557899999999999999766       3443      36677


Q ss_pred             ceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          343 SAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       343 ~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      |+  ++-+|.+     ||++|.+.+++.|+|.
T Consensus       237 G~--~~~~G~~-----Ml~~Qa~~~f~~wtg~  261 (278)
T PRK00258        237 GA--RTIDGLG-----MLVHQAAEAFELWTGV  261 (278)
T ss_pred             cC--eecCCHH-----HHHHHHHHHHHHHcCC
Confidence            87  5667777     9999999999999985

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=99.88  E-value=8.6e-22  Score=190.63  Aligned_cols=225  Identities=14%  Similarity=0.156  Sum_probs=172.8

Q ss_pred             CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHH
Q 017184          112 GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSI  191 (375)
Q Consensus       112 g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i  191 (375)
                      +..++|..=++|+. -|.+-. .-+.+++++|+++.|..|+    .++|.+.++.+... ++.|++|++|+++  ....+
T Consensus         6 ~~~~~~~~gliG~P-~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~~-~~~G~nVT~P~K~--~~~~~   76 (272)
T PRK12550          6 NKDTQLCISLAARP-SNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRAL-GIRGCAVSMPFKE--AVIPL   76 (272)
T ss_pred             CCCceEEEEEEccc-hhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHhc-CCCEEEECcCCHH--HHHHH
Confidence            34567655667864 566655 7889999999999999995    46788888888763 7999999999987  55778


Q ss_pred             HhhCCc-ccccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-
Q 017184          192 LNAVSM-EKDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-  267 (375)
Q Consensus       192 ~~~I~p-~KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-  267 (375)
                      ++.++| .+.+.+++.+ + -|++. |++      ++..|+++.|++.+.+ .+|+|+|+|+|++ +|+++..|...|+ 
T Consensus        77 lD~l~~~A~~iGAVNTi~~~~g~l~-G~N------TD~~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~~~g~~  147 (272)
T PRK12550         77 VDELDPSAQAIESVNTIVNTDGHLK-AYN------TDYIAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALRDAGFT  147 (272)
T ss_pred             hhcCCHHHHHhCCeeEEEeeCCEEE-EEe------cCHHHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHHHCCCC
Confidence            888888 7777766332 3 23443 444      4559999999988875 4789999999998 9999999999997 


Q ss_pred             eEEEEcCCCCC---HH--------hh--ccCCcEEEEccC---CCC------cccCCCcCCCcEEEEeeecCCCCCCCCC
Q 017184          268 TVSIVHSRTKN---PE--------EI--TRQADIIISAVG---QPN------MVRGSWIKPGAVIIDVGINPVEDAKSPR  325 (375)
Q Consensus       268 tVtv~hs~t~~---L~--------~~--l~~ADIVIsAvG---~p~------~I~~~~vk~gavVIDvgin~~~~~~~~~  325 (375)
                      +|+|++|+.+.   +.        +.  ...+|+||+|++   .++      .++.++++++.+|+|+.|+|.+|     
T Consensus       148 ~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T-----  222 (272)
T PRK12550        148 DGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET-----  222 (272)
T ss_pred             EEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC-----
Confidence            69999997421   11        11  145899999986   221      26677899999999999999877     


Q ss_pred             CceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       326 g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                        +|..      .++..|+  ++-+|.+     ||++|.+++++.|+|.
T Consensus       223 --~ll~------~A~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg~  256 (272)
T PRK12550        223 --PLIR------YARARGK--TVITGAE-----VIALQAVEQFVLYTGV  256 (272)
T ss_pred             --HHHH------HHHHCcC--eEeCCHH-----HHHHHHHHHHHHHhCC
Confidence              4554      3566776  4557777     9999999999999985

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=99.88  E-value=1.3e-21  Score=189.72  Aligned_cols=223  Identities=16%  Similarity=0.215  Sum_probs=167.8

Q ss_pred             EEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-
Q 017184          119 VILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-  197 (375)
Q Consensus       119 iI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-  197 (375)
                      .-++|+.-+.-.-=..-+.+++++|+++.|+.++. .+.++|.+.++.+..  ++.|++|++|||.  ...++++.++| 
T Consensus         8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-~~~~~l~~~~~~~~~--~~~G~nVT~P~K~--~~~~~~d~~~~~   82 (282)
T TIGR01809         8 AFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFET-CSAEELKEVLSGFGP--QFGGASVTIPLKF--AILRFADEHTDR   82 (282)
T ss_pred             EEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeec-CCHHHHHHHHHhcCC--CCcEEEECCCCHH--HHHHHhhcCCHH
Confidence            44677543222223356778999999999999963 245789999998843  7999999999987  55678888888 


Q ss_pred             ccccCccccc-h--hhhcccCCCccccccCCHHHHHHHHHHhCC--CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEE
Q 017184          198 EKDVDGFHPL-N--IGRLAMRGREPLFIPCTPKGCIELLHRYGF--DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSI  271 (375)
Q Consensus       198 ~KDVDGl~~~-N--~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i--~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv  271 (375)
                      .|-+..++.+ +  -|++. |+++|+      .|+++.|++.+.  +++||+|+|||+|++ ||+++..|...|+ +|+|
T Consensus        83 A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i~I  154 (282)
T TIGR01809        83 ASLIGSVNTLLRTQNGIWK-GDNTDW------DGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTDITV  154 (282)
T ss_pred             HHHhCceeEEEEcCCCcEE-EecCCH------HHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCeEEE
Confidence            7777776433 3  24443 555555      999999998874  689999999999997 9999999999997 7999


Q ss_pred             EcCCCC----------------------CHHhhccCCcEEEEccCCCCcccCCC------------cCCCcEEEEeeecC
Q 017184          272 VHSRTK----------------------NPEEITRQADIIISAVGQPNMVRGSW------------IKPGAVIIDVGINP  317 (375)
Q Consensus       272 ~hs~t~----------------------~L~~~l~~ADIVIsAvG~p~~I~~~~------------vk~gavVIDvgin~  317 (375)
                      ++|+..                      ++.+.+.++|+||++++....++.+.            +.++.+|+|+.|+|
T Consensus       155 ~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P  234 (282)
T TIGR01809       155 INRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDP  234 (282)
T ss_pred             EeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCC
Confidence            998621                      12234577899999998654343322            34678999999999


Q ss_pred             CCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       318 ~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .+|       .|+.      .++.+|+  ++-+|.+     ||++|.+.+++.|+|.
T Consensus       235 ~~T-------~ll~------~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~  271 (282)
T TIGR01809       235 WPT-------PLVA------IVSAAGW--RVISGLQ-----MLLHQGFAQFEQWTGM  271 (282)
T ss_pred             CCC-------HHHH------HHHHCCC--EEECcHH-----HHHHHHHHHHHHHHCC
Confidence            877       4554      3566776  4556777     9999999999999985

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=99.88  E-value=6.2e-22  Score=192.63  Aligned_cols=209  Identities=20%  Similarity=0.333  Sum_probs=167.0

Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCcc-ccchh-
Q 017184          133 RNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGF-HPLNI-  209 (375)
Q Consensus       133 ~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl-~~~N~-  209 (375)
                      ..-+.+++++|+++.|..|.  +..++|.+.|+.+. +..+.|++|++|+++  ....+++.+++ .+-+..+ |.++. 
T Consensus        23 ~~Hn~~~~~lGl~~~Y~a~~--v~~~~l~~~v~~~~-~~g~~G~NVTiP~Ke--~~~~~lD~l~~~A~~iGAVNTl~~~~   97 (283)
T COG0169          23 RMHNAAFRALGLDYVYLAFE--VPPEDLPEAVSGIR-ALGFRGLNVTIPFKE--AALPLLDELSPRARLIGAVNTLVRED   97 (283)
T ss_pred             HHHHHHHHHcCCCceEEEee--cCHHHHHHHHHHHH-hcCCCeeEECCccHH--HHHHHHhcCCHHHHHhCCceEEEEcc
Confidence            35678999999999999996  56899999999998 578999999999997  56778888988 7777666 33444 


Q ss_pred             -hhcccCCCccccccCCHHHHHHHHHHhC--CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCCC---HH--
Q 017184          210 -GRLAMRGREPLFIPCTPKGCIELLHRYG--FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTKN---PE--  280 (375)
Q Consensus       210 -G~l~~g~~~~~~~PcT~~gvi~lL~~~~--i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~~---L~--  280 (375)
                       |++. |+++|+      .|+.+.|++++  .+.+||+|+|+|+||+ +|+++..|++.|+ +|+|+||+...   |.  
T Consensus        98 ~g~l~-G~NTD~------~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169          98 DGKLR-GYNTDG------IGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             CCEEE-EEcCCH------HHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence             5554 666665      99999999987  5677999999999998 9999999999995 79999997421   11  


Q ss_pred             ----------------hhccCCcEEEEccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhh
Q 017184          281 ----------------EITRQADIIISAVGQ---PN----MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEE  337 (375)
Q Consensus       281 ----------------~~l~~ADIVIsAvG~---p~----~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~  337 (375)
                                      +...++|+||++|+.   ++    +++.+.++++.+|+|+.|+|.+|       +|+-      
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-------plL~------  236 (283)
T COG0169         170 FGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLET-------PLLR------  236 (283)
T ss_pred             hhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCC-------HHHH------
Confidence                            111159999999872   22    35568899999999999999988       4554      


Q ss_pred             hhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          338 ACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       338 v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .++..|+.  +-.|.|     ||+.|.+++|+.|+|+
T Consensus       237 ~A~~~G~~--~idGl~-----Mlv~Qaa~aF~lwtg~  266 (283)
T COG0169         237 EARAQGAK--TIDGLG-----MLVHQAAEAFELWTGV  266 (283)
T ss_pred             HHHHcCCe--EECcHH-----HHHHHHHHHHHHHhCC
Confidence            35566664  445676     9999999999999986

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=99.87  E-value=1.2e-21  Score=190.62  Aligned_cols=222  Identities=14%  Similarity=0.148  Sum_probs=170.5

Q ss_pred             eCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC---CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-
Q 017184          122 VGDRKDSATYVRNKKKACQSVGINSFEVHLPED---TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-  197 (375)
Q Consensus       122 vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~---vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-  197 (375)
                      +|+.-+.-..=..-+.++++.|+++.|..|+-.   +++++|.+.++.+... ++.|++|++|+|.  ....+++.++| 
T Consensus        10 iG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~lD~l~~~   86 (283)
T PRK14027         10 IGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPYKQ--AVLPLLDEVSEQ   86 (283)
T ss_pred             ECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccCHH--HHHHHhhhCCHH
Confidence            454322222234567889999999999999622   3467899999998764 8999999999987  56778888988 


Q ss_pred             ccccCccccc-h--hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          198 EKDVDGFHPL-N--IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       198 ~KDVDGl~~~-N--~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      .+.+..++.+ +  -|++. |+++|+      .|+++.|++.+.+++||+|+|+|+|++ ||+++..|...|+ +|+|++
T Consensus        87 A~~iGAVNTv~~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~n  158 (283)
T PRK14027         87 ATQLGAVNTVVIDATGHTT-GHNTDV------SGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVAD  158 (283)
T ss_pred             HHHhCCceEEEECCCCcEE-EEcCCH------HHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEc
Confidence            8888777543 3  35544 665665      999999998767889999999999997 9999999999996 799999


Q ss_pred             CCCC---CH---------------------HhhccCCcEEEEccCC---CC---cccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          274 SRTK---NP---------------------EEITRQADIIISAVGQ---PN---MVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       274 s~t~---~L---------------------~~~l~~ADIVIsAvG~---p~---~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      |+..   .|                     .+.+.++|+||++++.   ++   .++.+++.++.+|+|+.|+|.+|   
T Consensus       159 R~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T---  235 (283)
T PRK14027        159 LDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET---  235 (283)
T ss_pred             CCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCC---
Confidence            8631   11                     1234568999988862   21   25556788899999999999887   


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                          +|+.      .++..|+  ++-+|.+     ||++|.+++++.|+|.
T Consensus       236 ----~ll~------~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~G~  269 (283)
T PRK14027        236 ----ELLK------AARALGC--ETLDGTR-----MAIHQAVDAFRLFTGL  269 (283)
T ss_pred             ----HHHH------HHHHCCC--EEEccHH-----HHHHHHHHHHHHHhCC
Confidence                4665      3566787  4557777     9999999999999985

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.86  E-value=2.1e-21  Score=186.53  Aligned_cols=209  Identities=20%  Similarity=0.233  Sum_probs=163.4

Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h-h
Q 017184          133 RNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N-I  209 (375)
Q Consensus       133 ~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N-~  209 (375)
                      ..-+.+++++|+++.|..|+  +.+++|.+.++.++.. ++.|++|++|++.  +...+++.+++ .+-+.+++.+ + -
T Consensus        17 ~~hn~~~~~~g~~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~~d~~~~~A~~~gavNti~~~~   91 (270)
T TIGR00507        17 LIHNAFFKQLGLEGPYIAFL--VPPDDLEDALSGFFAL-GFKGANVTSPFKE--EAFQFLDEIDERAKLAGAVNTLKLED   91 (270)
T ss_pred             HHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHH--HHHHHhhhCCHHHHHhCCceEEEeeC
Confidence            35578899999999999996  6778899999999864 7999999999987  55678888888 7777776433 3 2


Q ss_pred             hhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH----------
Q 017184          210 GRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP----------  279 (375)
Q Consensus       210 G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L----------  279 (375)
                      |++. |+      +++..|+++.|++.+...++|+++|+|.|++ |++++..|...|+.|++++|+....          
T Consensus        92 g~l~-g~------NTD~~G~~~~l~~~~~~~~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~  163 (270)
T TIGR00507        92 GKLV-GY------NTDGIGLVSDLERLIPLRPNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSKAEELAERFQRY  163 (270)
T ss_pred             CEEE-EE------cCCHHHHHHHHHhcCCCccCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc
Confidence            3443 44      4555999999998777788999999999985 9999999999999999998863211          


Q ss_pred             --------Hh-hccCCcEEEEccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcc
Q 017184          280 --------EE-ITRQADIIISAVGQ---PN----MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVAS  343 (375)
Q Consensus       280 --------~~-~l~~ADIVIsAvG~---p~----~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~  343 (375)
                              .+ ...++|+||++++.   +.    .+..++++++.+|+|+.|+|.++       .|.      ..++..|
T Consensus       164 ~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-------~ll------~~A~~~G  230 (270)
T TIGR00507       164 GEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-------PFL------AEAKSLG  230 (270)
T ss_pred             CceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-------HHH------HHHHHCC
Confidence                    11 22578999999985   22    23456789999999999998765       333      3356667


Q ss_pred             eeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          344 AITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       344 ~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +  ++-.|.+     ||++|.+.+++.|+|.
T Consensus       231 ~--~~vdG~~-----Ml~~Qa~~~f~~w~g~  254 (270)
T TIGR00507       231 T--KTIDGLG-----MLVAQAALAFELWTGV  254 (270)
T ss_pred             C--eeeCCHH-----HHHHHHHHHHHHHcCC
Confidence            6  4556777     9999999999999985

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=99.81  E-value=3.3e-19  Score=186.73  Aligned_cols=221  Identities=21%  Similarity=0.306  Sum_probs=167.8

Q ss_pred             EEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-
Q 017184          119 VILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-  197 (375)
Q Consensus       119 iI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-  197 (375)
                      .-++|+.-+--.-=..-+.+++++|+++.|..|+  +  ++|.+.++.++. +++.|++|++|++.  ....+++.++| 
T Consensus       255 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v--~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~lD~~~~~  327 (529)
T PLN02520        255 YGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLL--V--DDLAKFLQTYSS-PDFAGFSCTIPHKE--DALKCCDEVDPI  327 (529)
T ss_pred             EEEEcCCcccccCHHHHHHHHHHCCCCcEEEEee--h--hhHHHHHHHHhh-CCCCEEEECcCCHH--HHHHHhccCCHH
Confidence            3367864333333346688999999999999996  3  467778887765 57999999999987  55778888888 


Q ss_pred             ccccCccccc-h---hhhcccCCCccccccCCHHHHHHHHHHh----------CCCCCCCEEEEEcCCcccHHHHHHHHh
Q 017184          198 EKDVDGFHPL-N---IGRLAMRGREPLFIPCTPKGCIELLHRY----------GFDIKGKRAVVIGRSNIVGMPAALLLQ  263 (375)
Q Consensus       198 ~KDVDGl~~~-N---~G~l~~g~~~~~~~PcT~~gvi~lL~~~----------~i~l~GK~vvVIGrs~~VGkpla~lL~  263 (375)
                      .+.+.+++.+ +   -|++. |+|+|+      .|+++.|++.          +.+++||+|+|+|+|++ |++++..|.
T Consensus       328 A~~iGAVNTvv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~  399 (529)
T PLN02520        328 AKSIGAINTIIRRPSDGKLV-GYNTDY------IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAK  399 (529)
T ss_pred             HHHhCCceEEEEeCCCCEEE-EEcccH------HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHH-HHHHHHHHH
Confidence            8888777543 3   25553 655555      9999999852          56789999999999987 999999999


Q ss_pred             hCCCeEEEEcCCCCC---H--------------Hhh-ccCCcEEEEccC---CCC----cccCCCcCCCcEEEEeeecCC
Q 017184          264 REDATVSIVHSRTKN---P--------------EEI-TRQADIIISAVG---QPN----MVRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       264 ~~gAtVtv~hs~t~~---L--------------~~~-l~~ADIVIsAvG---~p~----~I~~~~vk~gavVIDvgin~~  318 (375)
                      ++|++|++++|+.+.   +              .+. ...+||||++++   .|+    .++.++++++.+|+|+.|+|.
T Consensus       400 ~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~  479 (529)
T PLN02520        400 EKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPK  479 (529)
T ss_pred             HCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCC
Confidence            999999999886321   1              111 135789997775   232    256678999999999999998


Q ss_pred             CCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       319 ~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +|       .|+.      .++.+|+  ++-+|.+     ||++|.+.+++.|+|.
T Consensus       480 ~T-------~ll~------~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~  515 (529)
T PLN02520        480 IT-------RLLR------EAEESGA--IIVSGTE-----MFIRQAYEQFERFTGL  515 (529)
T ss_pred             cC-------HHHH------HHHHCCC--eEeCcHH-----HHHHHHHHHHHHHhCC
Confidence            87       4554      3566787  4556776     9999999999999985

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=99.79  E-value=4.3e-19  Score=183.82  Aligned_cols=219  Identities=18%  Similarity=0.236  Sum_probs=166.9

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          120 ILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       120 I~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      -.+|+.-+--.-=..-+.+++++|+++.|..|+  +.++++.+.++.+.. +++.|++|++|++.  ....+++.++| .
T Consensus       219 ~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~v~~~~d~~~~~A  293 (477)
T PRK09310        219 GLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLP--LTPQELPKFFSTIRD-LPFLGLSVTMPLKT--AVLDFLDKLDPSV  293 (477)
T ss_pred             EEECCCcccccCHHHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECccCHH--HHHHHhccCCHHH
Confidence            367864333333345688999999999999996  677888888888876 47999999999987  55678888888 7


Q ss_pred             cccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          199 KDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       199 KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +-+.+++.+ + -|++. |+|+|+      .|+++.|++.+.+++||+++|+|.|++ |++++..|.+.|++|++++++.
T Consensus       294 ~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        294 KLCGSCNTLVFRNGKIE-GYNTDG------EGLFSLLKQKNIPLNNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             HHhCcceEEEeeCCEEE-EEecCH------HHHHHHHHhcCCCcCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence            777776443 3 34554 555555      999999999999999999999999986 9999999999999999998763


Q ss_pred             CCHH--------------h--hccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhh
Q 017184          277 KNPE--------------E--ITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE  340 (375)
Q Consensus       277 ~~L~--------------~--~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~  340 (375)
                      ...+              +  .+.++|+||++++..-.+.. .+.  .+|+|+.|+|.++       .|.      ..++
T Consensus       366 ~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~~-~l~--~~v~D~~Y~P~~T-------~ll------~~A~  429 (477)
T PRK09310        366 AHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIPK-AFP--PCVVDINTLPKHS-------PYT------QYAR  429 (477)
T ss_pred             HHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcchh-HHh--hhEEeccCCCCCC-------HHH------HHHH
Confidence            2111              1  14678999999975433432 333  3899999999776       344      3356


Q ss_pred             hcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          341 VASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       341 ~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      ..|+  ++-+|.+     ||+.|.+++++.|+|-
T Consensus       430 ~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g~  456 (477)
T PRK09310        430 SQGS--SIIYGYE-----MFAEQALLQFRLWFPT  456 (477)
T ss_pred             HCcC--EEECcHH-----HHHHHHHHHHHHHcCC
Confidence            6776  4556777     9999999999999975

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.60  E-value=5.1e-15  Score=144.83  Aligned_cols=131  Identities=26%  Similarity=0.366  Sum_probs=106.4

Q ss_pred             CCHHH-HHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------CHHhhccCC
Q 017184          224 CTPKG-CIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------NPEEITRQA  286 (375)
Q Consensus       224 cT~~g-vi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~L~~~l~~A  286 (375)
                      .|+.+ +.+.++++++++.|++|+|||.|.+ |++++..|.+.|++|++++++..                ++.+.++++
T Consensus       133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~a  211 (296)
T PRK08306        133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKI  211 (296)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCC
Confidence            34455 5677888899999999999999985 99999999999999999988742                456788999


Q ss_pred             cEEEEccCCCCcccCC---CcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhh---cceeccCCCCccHHHHHHH
Q 017184          287 DIIISAVGQPNMVRGS---WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV---ASAITPVPGGVGPMTIAML  360 (375)
Q Consensus       287 DIVIsAvG~p~~I~~~---~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~---a~~iTPVPGGVGp~T~amL  360 (375)
                      |+||++++.+ +++.+   ++++|++|||+++++             |++||+.+.+.   +-+.+++||+|+|+|.+.+
T Consensus       212 DiVI~t~p~~-~i~~~~l~~~~~g~vIIDla~~p-------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~  277 (296)
T PRK08306        212 DIIFNTIPAL-VLTKEVLSKMPPEALIIDLASKP-------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQI  277 (296)
T ss_pred             CEEEECCChh-hhhHHHHHcCCCCcEEEEEccCC-------------CCcCeeehhhCCeEEEEECCCCccCCHHHHHHH
Confidence            9999998643 46655   468999999999876             45677554443   4456999999999999999


Q ss_pred             HHHHHHHHH
Q 017184          361 LSNTLTSAK  369 (375)
Q Consensus       361 l~N~v~a~~  369 (375)
                      +.|.+..+-
T Consensus       278 ~~~~i~~~l  286 (296)
T PRK08306        278 LANVLSQLL  286 (296)
T ss_pred             HHHHHHHHH
Confidence            999997763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.50  E-value=8.8e-14  Score=135.75  Aligned_cols=129  Identities=27%  Similarity=0.409  Sum_probs=102.6

Q ss_pred             CCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------CHHhhccCC
Q 017184          224 CTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------NPEEITRQA  286 (375)
Q Consensus       224 cT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~L~~~l~~A  286 (375)
                      +|+++. ..+++.++++++||+++|+|.|++ |+.++..|...|++|++++|+..                ++.+.++++
T Consensus       132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a  210 (287)
T TIGR02853       132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI  210 (287)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence            556655 566777889999999999999996 99999999999999999988642                356778999


Q ss_pred             cEEEEccCCCCcccC---CCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcc---eecc-CCCCccHHHHHH
Q 017184          287 DIIISAVGQPNMVRG---SWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVAS---AITP-VPGGVGPMTIAM  359 (375)
Q Consensus       287 DIVIsAvG~p~~I~~---~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~---~iTP-VPGGVGp~T~am  359 (375)
                      |+||++++.+ +++.   +.+++++++||++++|             |.+||+. +++.|   ...| .||.|+|.|.+.
T Consensus       211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P-------------g~tdf~~-Ak~~G~~a~~~~glPg~~ap~ta~~  275 (287)
T TIGR02853       211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP-------------GGTDFEY-AKKRGIKALLAPGLPGIVAPKTAGK  275 (287)
T ss_pred             CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC-------------CCCCHHH-HHHCCCEEEEeCCCCcccCchhHHH
Confidence            9999998754 4444   3578999999999876             4567744 55544   2234 899999999999


Q ss_pred             HHHHHHHHH
Q 017184          360 LLSNTLTSA  368 (375)
Q Consensus       360 Ll~N~v~a~  368 (375)
                      ++.|++...
T Consensus       276 i~~~~~~~~  284 (287)
T TIGR02853       276 ILANVLSEL  284 (287)
T ss_pred             HHHHHHHHH
Confidence            999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.16  E-value=2.8e-11  Score=105.35  Aligned_cols=89  Identities=29%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC--------------------CCHHhhccCCcEE
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT--------------------KNPEEITRQADII  289 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t--------------------~~L~~~l~~ADIV  289 (375)
                      |+.++...+++||+++|||+|++ |++++..|..+|++ |++++|+.                    .++.+.+.++|+|
T Consensus         1 ~la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    1 ELAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             HHHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEE
T ss_pred             ChhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeE
Confidence            34455556899999999999997 99999999999986 99999872                    2455678899999


Q ss_pred             EEccCCCCc-ccCCCcCCC----cEEEEeeecCCCC
Q 017184          290 ISAVGQPNM-VRGSWIKPG----AVIIDVGINPVED  320 (375)
Q Consensus       290 IsAvG~p~~-I~~~~vk~g----avVIDvgin~~~~  320 (375)
                      |++++.+.. ++.+++++.    .+++|+++++.-+
T Consensus        80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   80 INATPSGMPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             EE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             EEecCCCCcccCHHHHHHHHhhhhceeccccCCCCC
Confidence            999998865 788999887    4999999877544

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.12  E-value=9.1e-10  Score=95.91  Aligned_cols=128  Identities=25%  Similarity=0.383  Sum_probs=96.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCC-------------------CHHhhcc
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTK-------------------NPEEITR  284 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~-------------------~L~~~l~  284 (375)
                      +..|+.+.+++.++++++++++|+|.|++ |+.++..|.+.| ..|++++++..                   ++.+.++
T Consensus         2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (155)
T cd01065           2 DGLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA   80 (155)
T ss_pred             CHHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc
Confidence            34799999999999999999999999875 999999999886 68999876521                   2334478


Q ss_pred             CCcEEEEccCCCCc------ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHH
Q 017184          285 QADIIISAVGQPNM------VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIA  358 (375)
Q Consensus       285 ~ADIVIsAvG~p~~------I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a  358 (375)
                      ++|+||++++....      +....++++.+|+|+++.+..+             .+.+..+..+. .=++|      -.
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-------------~l~~~~~~~g~-~~v~g------~~  140 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-------------PLLKEARALGA-KTIDG------LE  140 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-------------HHHHHHHHCCC-ceeCC------HH
Confidence            89999999986542      2334568999999999876421             22233444554 23454      44


Q ss_pred             HHHHHHHHHHHHHhc
Q 017184          359 MLLSNTLTSAKRVHN  373 (375)
Q Consensus       359 mLl~N~v~a~~~~~~  373 (375)
                      ||+.|.+++++.|+|
T Consensus       141 ~~~~q~~~~~~~~~~  155 (155)
T cd01065         141 MLVYQAAEAFELWTG  155 (155)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999986

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=99.09  E-value=3.2e-10  Score=91.26  Aligned_cols=78  Identities=35%  Similarity=0.501  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHhC----CCCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCc
Q 017184          224 CTPKGCIELLHRYG----FDIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRTKNPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       224 cT~~gvi~lL~~~~----i~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      ||+.++++.|++..    .++++|+++|+|+|.. |++++.+|.+. +.+|++++|            ||+|+++|.+++
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~-g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~   67 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV-GKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP   67 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence            78899888888654    5599999999999775 99999999998 578999987            999999999999


Q ss_pred             ccC---CCcCCCcEEEEee
Q 017184          299 VRG---SWIKPGAVIIDVG  314 (375)
Q Consensus       299 I~~---~~vk~gavVIDvg  314 (375)
                      +.+   .+++++.+|+|+.
T Consensus        68 ~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          68 VLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             chHHHHHhcCCCCEEEecC
Confidence            876   7889999999973

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.03  E-value=3e-10  Score=117.76  Aligned_cols=116  Identities=21%  Similarity=0.246  Sum_probs=88.4

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEccCCCC
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .+++..+..+.||+|+|+|.|.+ |+++|..|...|++|+++++.             ..++.+.++.|||||+++|.++
T Consensus       243 ~~~R~~~~~LaGKtVgVIG~G~I-Gr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~  321 (476)
T PTZ00075        243 GIFRATDVMIAGKTVVVCGYGDV-GKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKD  321 (476)
T ss_pred             HHHHhcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccc
Confidence            34556689999999999999985 999999999999999999664             2357788999999999999999


Q ss_pred             cccCCCc---CCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCC
Q 017184          298 MVRGSWI---KPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPG  350 (375)
Q Consensus       298 ~I~~~~v---k~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPG  350 (375)
                      +|+.+++   |+|+++|++|....+..-  .+-+..+|+|..++++....+| .|.
T Consensus       322 iI~~e~~~~MKpGAiLINvGr~d~Ei~i--~aL~~~~~vdv~evep~v~~~~-~~~  374 (476)
T PTZ00075        322 IITLEHMRRMKNNAIVGNIGHFDNEIQV--AELEAYPGIEIVEIKPQVDRYT-FPD  374 (476)
T ss_pred             ccCHHHHhccCCCcEEEEcCCCchHHhH--HHHHhcCCceeecccCCCCeEE-eCC
Confidence            9987766   999999999987422100  0012345777666666655554 443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.01  E-value=7.2e-10  Score=100.26  Aligned_cols=91  Identities=29%  Similarity=0.450  Sum_probs=65.9

Q ss_pred             HHHHHHH-HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEc
Q 017184          227 KGCIELL-HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       227 ~gvi~lL-~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsA  292 (375)
                      +.+++-+ +..+..+.||+++|+|.|.+ ||.+|..|...||.|+|+...             +..+++.+++|||+|++
T Consensus         7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            3444444 35689999999999999995 999999999999999999765             24688999999999999


Q ss_pred             cCCCCcccCCC---cCCCcEEEEeeecCC
Q 017184          293 VGQPNMVRGSW---IKPGAVIIDVGINPV  318 (375)
Q Consensus       293 vG~p~~I~~~~---vk~gavVIDvgin~~  318 (375)
                      ||..+.++.++   +|+|+++.++|....
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSSTT
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCce
Confidence            99998888765   599999999996543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.97  E-value=9.6e-10  Score=112.34  Aligned_cols=157  Identities=20%  Similarity=0.321  Sum_probs=115.1

Q ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccc
Q 017184          141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPL  220 (375)
Q Consensus       141 ~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~  220 (375)
                      ..|+++-.      +.|.|++..++..-.-..=.|..     . .+-..-+.++|.-.|-|-.-|..|.|.+..      
T Consensus       100 AsGLDSmV------lGE~QILGQVK~Ay~~a~~~g~~-----g-~~L~~lFqkAi~~gKrvRseT~I~~~~VSi------  161 (414)
T COG0373         100 ASGLDSLV------LGETQILGQVKDAYAKAQENGTL-----G-KVLNRLFQKAISVGKRVRSETGIGKGAVSI------  161 (414)
T ss_pred             hccchhhh------cCcHHHHHHHHHHHHHHHHcCCc-----h-HHHHHHHHHHHHHHHHhhcccCCCCCccch------
Confidence            45777643      35567776666543321111111     1 112234556787788877767666555432      


Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC-----------------CCHHhh
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT-----------------KNPEEI  282 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t-----------------~~L~~~  282 (375)
                           +.+++++.++...+|++|+|+|||+|.+ |.-++..|..+| ..|+|+||+-                 .++.++
T Consensus       162 -----~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~  235 (414)
T COG0373         162 -----SSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEA  235 (414)
T ss_pred             -----HHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHh
Confidence                 3788999999999999999999999997 999999999999 5899999972                 467889


Q ss_pred             ccCCcEEEEccCCCCc-ccCCCcCCC------cEEEEeeecCCCCC
Q 017184          283 TRQADIIISAVGQPNM-VRGSWIKPG------AVIIDVGINPVEDA  321 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~-I~~~~vk~g------avVIDvgin~~~~~  321 (375)
                      +.++||||++||.|++ |+.+++...      .++||++.+|+-++
T Consensus       236 l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         236 LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            9999999999999997 688777443      69999999997654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.86  E-value=8e-09  Score=105.92  Aligned_cols=157  Identities=17%  Similarity=0.200  Sum_probs=108.2

Q ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccc
Q 017184          141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPL  220 (375)
Q Consensus       141 ~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~  220 (375)
                      ..|+++-.      +.|.|++..+++.-+...=.|..      ..+-..-+..++.-.|.|---|..+.|..        
T Consensus       103 asGLdSmV------lGE~QIlgQVK~A~~~A~~~g~~------g~~L~~lf~~A~~~aKrVrteT~I~~~~v--------  162 (414)
T PRK13940        103 ACGLESMV------LGEPQILGQVKDSYTLSKKNHAI------GKELDRVFQKVFATAKRVRSETRIGHCPV--------  162 (414)
T ss_pred             Hhccchhh------cCcHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHHHHHHhccCCCCCCc--------
Confidence            45777653      35667776666554321111110      01112334446666777654443333222        


Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC------------------CCHHh
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT------------------KNPEE  281 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t------------------~~L~~  281 (375)
                         .-+...+++.++...++.||+|+|||+|++ |+.++..|..+|+ .+++++|+.                  .++.+
T Consensus       163 ---Sv~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~  238 (414)
T PRK13940        163 ---SVAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ  238 (414)
T ss_pred             ---CHHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH
Confidence               233667899988877899999999999997 9999999999995 799999872                  23456


Q ss_pred             hccCCcEEEEccCCCCc-ccCCCcCC-CcEEEEeeecCCCCC
Q 017184          282 ITRQADIIISAVGQPNM-VRGSWIKP-GAVIIDVGINPVEDA  321 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~-I~~~~vk~-gavVIDvgin~~~~~  321 (375)
                      .+.+||+||+||+.|++ |+.++++. ..++||++.+++-+|
T Consensus       239 ~l~~aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdidp  280 (414)
T PRK13940        239 LIKKADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQALDP  280 (414)
T ss_pred             HhccCCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCCCc
Confidence            78999999999999997 68777753 469999999998764

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.74  E-value=9.6e-08  Score=87.19  Aligned_cols=96  Identities=33%  Similarity=0.394  Sum_probs=71.9

Q ss_pred             CHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------
Q 017184          225 TPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------  277 (375)
Q Consensus       225 T~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------  277 (375)
                      |+.+.+    +.|++++.+++|++++|+|..+-+|+.++..|.+.|+.|+++.|+..                       
T Consensus         7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~   86 (194)
T cd01078           7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS   86 (194)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC
Confidence            445544    44555678999999999997455699999999999999999877521                       


Q ss_pred             ---CHHhhccCCcEEEEccCCCC--cccCC-CcCCCcEEEEeeecCCCC
Q 017184          278 ---NPEEITRQADIIISAVGQPN--MVRGS-WIKPGAVIIDVGINPVED  320 (375)
Q Consensus       278 ---~L~~~l~~ADIVIsAvG~p~--~I~~~-~vk~gavVIDvgin~~~~  320 (375)
                         ++.+.++++|+||++++.+.  ....+ ..+++.+|+|+.++|..+
T Consensus        87 ~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          87 DDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCC
Confidence               12356788999999998766  33333 345689999999998754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.71  E-value=9.6e-08  Score=95.78  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhC-C-CeEEEEcCCCC---------------CHHhhccCCcEE
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE-D-ATVSIVHSRTK---------------NPEEITRQADII  289 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~-g-AtVtv~hs~t~---------------~L~~~l~~ADIV  289 (375)
                      .++....+..+.+++||+|+|+|++|.+|+.++..|..+ | ..+++++|+..               ++.+.+.++|+|
T Consensus       140 ~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiV  219 (340)
T PRK14982        140 RQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIV  219 (340)
T ss_pred             HHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEE
Confidence            345555556778999999999999877899999999864 5 48999988631               233677899999


Q ss_pred             EEccCCCCc--ccCCCcCCCcEEEEeeecCCCCC
Q 017184          290 ISAVGQPNM--VRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       290 IsAvG~p~~--I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      |++++.|+.  +++++++++.++||++++++-++
T Consensus       220 v~~ts~~~~~~I~~~~l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        220 VWVASMPKGVEIDPETLKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             EECCcCCcCCcCCHHHhCCCeEEEEecCCCCCCc
Confidence            999998765  78899999999999999987654

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.69  E-value=7.4e-08  Score=96.46  Aligned_cols=156  Identities=13%  Similarity=0.071  Sum_probs=100.9

Q ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccc
Q 017184          141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPL  220 (375)
Q Consensus       141 ~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~  220 (375)
                      ..|+++-.+      .|.|++..+++.-....=+|-.      ...-..-+..++.-.|.|---|..+.|.+        
T Consensus        97 asGLDSmVl------GE~QIlGQVK~Ay~~A~~~g~~------g~~L~~lf~~A~~~aKrVRteT~I~~~~v--------  156 (338)
T PRK00676         97 TSGMDSLIL------GETEIQGQVKRAYLKAARERKL------PFALHFLFQKALKEGKVFRSKGGAPYAEV--------  156 (338)
T ss_pred             hcccchhhc------CcHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHHHHHhhhcCCCCCCc--------
Confidence            567887533      5566766666543221111110      00112334446666777654443332221        


Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-----CCHH----hhccCCcEEE
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-----KNPE----EITRQADIII  290 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-----~~L~----~~l~~ADIVI  290 (375)
                         .-+.+++++++.. .+++||+|+|||+|++ |+-++..|.++|+ .|++|||+.     .++.    ++..++||||
T Consensus       157 ---Sv~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVI  231 (338)
T PRK00676        157 ---TIESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIF  231 (338)
T ss_pred             ---CHHHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEE
Confidence               1234467777665 5799999999999997 9999999999995 799999983     2232    5577999999


Q ss_pred             Ec---cCCCCc-ccCCCcCCC--cEEEEeeecCCCCC
Q 017184          291 SA---VGQPNM-VRGSWIKPG--AVIIDVGINPVEDA  321 (375)
Q Consensus       291 sA---vG~p~~-I~~~~vk~g--avVIDvgin~~~~~  321 (375)
                      ++   ++.|+. ++.+++++.  -++||++.+++-++
T Consensus       232 s~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPRdId~  268 (338)
T PRK00676        232 FGSSESAYAFPHLSWESLADIPDRIVFDFNVPRTFPW  268 (338)
T ss_pred             EcCCcCCCCCceeeHHHHhhccCcEEEEecCCCCCcc
Confidence            97   677876 566666432  48999999998664

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.68  E-value=6.6e-08  Score=91.50  Aligned_cols=93  Identities=27%  Similarity=0.429  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe---EEEEcCC----CC--------------------
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT---VSIVHSR----TK--------------------  277 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt---Vtv~hs~----t~--------------------  277 (375)
                      +-.|++..++..+.++++++++|+|+|++ |+.++.+|...|++   |++++|+    ..                    
T Consensus         8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~   86 (226)
T cd05311           8 TLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK   86 (226)
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc
Confidence            45788999999999999999999999997 99999999999975   9999987    11                    


Q ss_pred             ---CHHhhccCCcEEEEccCCCCcccCCCcC---CCcEEEEeeecCCCC
Q 017184          278 ---NPEEITRQADIIISAVGQPNMVRGSWIK---PGAVIIDVGINPVED  320 (375)
Q Consensus       278 ---~L~~~l~~ADIVIsAvG~p~~I~~~~vk---~gavVIDvgin~~~~  320 (375)
                         ++.+.++++|+||++++ ++++++++++   ++.+|+|+. ||.++
T Consensus        87 ~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~e  133 (226)
T cd05311          87 TGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVPE  133 (226)
T ss_pred             ccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCCc
Confidence               24456677999999999 8888888877   889999987 88654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.58  E-value=1.1e-07  Score=97.93  Aligned_cols=94  Identities=24%  Similarity=0.332  Sum_probs=79.4

Q ss_pred             cCCHHHHHHHHHHh-CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcE
Q 017184          223 PCTPKGCIELLHRY-GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADI  288 (375)
Q Consensus       223 PcT~~gvi~lL~~~-~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADI  288 (375)
                      -+|.++++.-+++. ++.+.||+|+|+|.|.+ |+.++..|...|++|+++++..             .++.+.++.+|+
T Consensus       192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDV  270 (425)
T PRK05476        192 YGTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDI  270 (425)
T ss_pred             HHHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCE
Confidence            35778888877766 88899999999999985 9999999999999999997642             246778889999


Q ss_pred             EEEccCCCCcccCC---CcCCCcEEEEeeecC
Q 017184          289 IISAVGQPNMVRGS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       289 VIsAvG~p~~I~~~---~vk~gavVIDvgin~  317 (375)
                      ||+++|.++.++.+   .+|+|++++++|...
T Consensus       271 VI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        271 FVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            99999998888754   569999999999754

>PLN00203 glutamyl-tRNA reductase

Probab=98.47  E-value=3.6e-07  Score=96.32  Aligned_cols=96  Identities=14%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHhCC--CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------CCHHh
Q 017184          225 TPKGCIELLHRYGF--DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------KNPEE  281 (375)
Q Consensus       225 T~~gvi~lL~~~~i--~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------~~L~~  281 (375)
                      -+.+.+++.++..-  ++.+++|+|||+|++ |+.++..|...|+ .|++++++.                    .++.+
T Consensus       247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~  325 (519)
T PLN00203        247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA  325 (519)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence            34567888887654  499999999999886 9999999999997 699998762                    13456


Q ss_pred             hccCCcEEEEccCCCCc-ccCCCcCC----------CcEEEEeeecCCCCC
Q 017184          282 ITRQADIIISAVGQPNM-VRGSWIKP----------GAVIIDVGINPVEDA  321 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~-I~~~~vk~----------gavVIDvgin~~~~~  321 (375)
                      .+.+||+||++|+.++. ++++|+++          ..++||++++++-+|
T Consensus       326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp  376 (519)
T PLN00203        326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA  376 (519)
T ss_pred             HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence            78899999999998885 78887643          259999999997654

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.45  E-value=6.9e-07  Score=90.39  Aligned_cols=123  Identities=29%  Similarity=0.383  Sum_probs=85.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHHhhccCCcEEEEccC---C
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPEEITRQADIIISAVG---Q  295 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG---~  295 (375)
                      +.+++|+|||+|.+ |+.++..|...|++|++++++.                     .++.+.+++||+||++++   .
T Consensus       165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            57889999999885 9999999999999999997641                     135667889999999984   3


Q ss_pred             --CCcccCCCc---CCCcEEEEeeecCCCCCCCCCCceeecccchhhhhh---hcceeccCCCCccHHHHHHHHHHHHHH
Q 017184          296 --PNMVRGSWI---KPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE---VASAITPVPGGVGPMTIAMLLSNTLTS  367 (375)
Q Consensus       296 --p~~I~~~~v---k~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~---~a~~iTPVPGGVGp~T~amLl~N~v~a  367 (375)
                        |.+++.+++   +++.+|||+++.+-  +.-. ..+ .+..|++.+..   ..-.+.-.||-+ |.|...++.|.+..
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~G--G~~e-~~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~l~~  318 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQG--GCVE-TSR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNATMP  318 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCC--CCcc-CCc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHHHHH
Confidence              556777654   78999999998763  1100 001 12222211111   122455678888 99999999888755


Q ss_pred             H
Q 017184          368 A  368 (375)
Q Consensus       368 ~  368 (375)
                      +
T Consensus       319 ~  319 (370)
T TIGR00518       319 Y  319 (370)
T ss_pred             H
Confidence            4

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.43  E-value=7e-07  Score=91.55  Aligned_cols=94  Identities=29%  Similarity=0.379  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHH-hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEE
Q 017184          224 CTPKGCIELLHR-YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADII  289 (375)
Q Consensus       224 cT~~gvi~lL~~-~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIV  289 (375)
                      +|-+.+++-+.+ .++.+.||+|+|+|.|.+ |+.+++.|...|+.|+++.+..             .++++.++.+|+|
T Consensus       176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV  254 (406)
T TIGR00936       176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF  254 (406)
T ss_pred             ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence            455666655544 588899999999999996 9999999999999999986442             2456778999999


Q ss_pred             EEccCCCCcccC---CCcCCCcEEEEeeecCC
Q 017184          290 ISAVGQPNMVRG---SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       290 IsAvG~p~~I~~---~~vk~gavVIDvgin~~  318 (375)
                      |+++|.++.++.   ..+|+|++++.+|....
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~  286 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDV  286 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCCCc
Confidence            999999988876   46699999999997543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.43  E-value=5.1e-07  Score=92.60  Aligned_cols=94  Identities=21%  Similarity=0.374  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC-----------------CHHhhccCCcE
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK-----------------NPEEITRQADI  288 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~-----------------~L~~~l~~ADI  288 (375)
                      ...+++.+....++.|++|+|||+|.+ |+.++..|...|+ .|++++++..                 ++.+.+..+|+
T Consensus       167 ~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDv  245 (423)
T PRK00045        167 SAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADI  245 (423)
T ss_pred             HHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCE
Confidence            444566655444789999999999886 9999999999997 7999988621                 23456788999


Q ss_pred             EEEccCCCCc-ccCCCcCC--------CcEEEEeeecCCCCC
Q 017184          289 IISAVGQPNM-VRGSWIKP--------GAVIIDVGINPVEDA  321 (375)
Q Consensus       289 VIsAvG~p~~-I~~~~vk~--------gavVIDvgin~~~~~  321 (375)
                      ||+++|.|+. ++.+|+++        +.++||++.++.-++
T Consensus       246 VI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        246 VISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             EEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence            9999998875 78888844        479999998876553

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.41  E-value=4.5e-07  Score=92.94  Aligned_cols=95  Identities=29%  Similarity=0.404  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC-----------------CCHHhhccCCc
Q 017184          226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT-----------------KNPEEITRQAD  287 (375)
Q Consensus       226 ~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t-----------------~~L~~~l~~AD  287 (375)
                      +.+++++.++...++.|++|+|||.|.+ |+.++..|...| ..|++++++.                 .++.+.+..+|
T Consensus       164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence            3455666766656799999999999886 999999999999 6899998762                 13446678999


Q ss_pred             EEEEccCCCCc-ccCCCcCC-------CcEEEEeeecCCCCC
Q 017184          288 IIISAVGQPNM-VRGSWIKP-------GAVIIDVGINPVEDA  321 (375)
Q Consensus       288 IVIsAvG~p~~-I~~~~vk~-------gavVIDvgin~~~~~  321 (375)
                      +||+++|.|+. ++.+|+++       ..++||++.++.-++
T Consensus       243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            99999998875 78888853       359999998775553

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.31  E-value=1.1e-06  Score=79.81  Aligned_cols=81  Identities=26%  Similarity=0.336  Sum_probs=65.0

Q ss_pred             HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCC----CC
Q 017184          235 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQ----PN  297 (375)
Q Consensus       235 ~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~----p~  297 (375)
                      ..+.++.||+|.|||.|.+ |+.+|.+|..-|++|+.++++.             .++++.+++||+|+...+.    -+
T Consensus        29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~  107 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG  107 (178)
T ss_dssp             TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred             CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence            3467899999999999997 9999999999999999998763             4678899999999999883    24


Q ss_pred             cccCC---CcCCCcEEEEeeec
Q 017184          298 MVRGS---WIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~---~vk~gavVIDvgin  316 (375)
                      +|+.+   .+|+|+++|+++--
T Consensus       108 li~~~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen  108 LINAEFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             SBSHHHHHTSTTTEEEEESSSG
T ss_pred             eeeeeeeeccccceEEEeccch
Confidence            67765   45999999999844

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.30  E-value=1.7e-06  Score=88.93  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=74.8

Q ss_pred             CHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEE
Q 017184          225 TPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIII  290 (375)
Q Consensus       225 T~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVI  290 (375)
                      |-+++ -.+++..++.+.|++|+|+|.|.+ |+.++..+...||+|+++....             .++++.++.+|+||
T Consensus       184 ~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI  262 (413)
T cd00401         184 CRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFV  262 (413)
T ss_pred             hchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEE
Confidence            34444 455566789999999999999986 9999999999999999986542             24567788999999


Q ss_pred             EccCCCCcccC---CCcCCCcEEEEeeecC
Q 017184          291 SAVGQPNMVRG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       291 sAvG~p~~I~~---~~vk~gavVIDvgin~  317 (375)
                      .++|.++.+..   +++++|.+++.+|...
T Consensus       263 ~atG~~~~i~~~~l~~mk~GgilvnvG~~~  292 (413)
T cd00401         263 TTTGNKDIITGEHFEQMKDGAIVCNIGHFD  292 (413)
T ss_pred             ECCCCHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            99999887754   5679999999999654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02494 adenosylhomocysteinase

Probab=98.25  E-value=2e-06  Score=89.53  Aligned_cols=90  Identities=21%  Similarity=0.322  Sum_probs=73.6

Q ss_pred             CHHHHHHHHH-HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEE
Q 017184          225 TPKGCIELLH-RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIII  290 (375)
Q Consensus       225 T~~gvi~lL~-~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVI  290 (375)
                      |-+.+++-+. ..++.+.||+|+|+|.|.+ |+.++..+...|++|+++.+..             .++.+.++.+||||
T Consensus       236 tgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI  314 (477)
T PLN02494        236 CRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFV  314 (477)
T ss_pred             ccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEE
Confidence            3455555444 4588899999999999986 9999999999999999986542             13567889999999


Q ss_pred             EccCCCCcccC---CCcCCCcEEEEeee
Q 017184          291 SAVGQPNMVRG---SWIKPGAVIIDVGI  315 (375)
Q Consensus       291 sAvG~p~~I~~---~~vk~gavVIDvgi  315 (375)
                      +++|..+++..   +++|+|++++++|.
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            99999888744   56799999999997

>PLN02928 oxidoreductase family protein

Probab=98.24  E-value=2.2e-06  Score=86.14  Aligned_cols=134  Identities=22%  Similarity=0.296  Sum_probs=89.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------------CCHHhhccCCcEEEE
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------------~~L~~~l~~ADIVIs  291 (375)
                      +.++.||++.|||.|.+ |+.+|.+|...|++|+.++++.                         .+|.+.+++||+|+.
T Consensus       154 ~~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        154 GDTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             ccCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence            35799999999999996 9999999999999999987641                         257789999999999


Q ss_pred             ccCC----CCcccCC---CcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchhh-------hhh-hcceeccC
Q 017184          292 AVGQ----PNMVRGS---WIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYEE-------ACE-VASAITPV  348 (375)
Q Consensus       292 AvG~----p~~I~~~---~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~~-------v~~-~a~~iTPV  348 (375)
                      +++.    .++|+.+   .+|+|+++||+|--.+-+..     -..| ++.|   ||-..+       ..+ ..-.+||=
T Consensus       233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g-~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH  311 (347)
T PLN02928        233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG-HLGGLAIDVAWSEPFDPDDPILKHPNVIITPH  311 (347)
T ss_pred             CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence            9884    3467665   45999999999855432210     0012 4433   552111       111 12357887


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHh
Q 017184          349 PGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       349 PGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                      -||.-.-+..-+...+++..++|.
T Consensus       312 ia~~t~~~~~~~~~~~~~nl~~~~  335 (347)
T PLN02928        312 VAGVTEYSYRSMGKIVGDAALQLH  335 (347)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHH
Confidence            777665555455555555555554

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.23  E-value=2.4e-06  Score=85.86  Aligned_cols=89  Identities=24%  Similarity=0.368  Sum_probs=73.7

Q ss_pred             HHHHHHH-HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEc
Q 017184          227 KGCIELL-HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISA  292 (375)
Q Consensus       227 ~gvi~lL-~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsA  292 (375)
                      +..+.-+ +..++-+.||+|||.|.|.+ ||-+|+.|...||.|.|..-..             ..+.+..+.+||+|++
T Consensus       193 qS~~DgI~RaTn~liaGK~vVV~GYG~v-GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~  271 (420)
T COG0499         193 QSLLDGILRATNVLLAGKNVVVAGYGWV-GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA  271 (420)
T ss_pred             hhHHHHHHhhhceeecCceEEEeccccc-chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc
Confidence            4444333 34788899999999999995 9999999999999999986542             2467888999999999


Q ss_pred             cCCCCcccCCCc---CCCcEEEEeeec
Q 017184          293 VGQPNMVRGSWI---KPGAVIIDVGIN  316 (375)
Q Consensus       293 vG~p~~I~~~~v---k~gavVIDvgin  316 (375)
                      +|.-+.|+.+++   |+|+++-+.|.-
T Consensus       272 TGnkdVi~~eh~~~MkDgaIl~N~GHF  298 (420)
T COG0499         272 TGNKDVIRKEHFEKMKDGAILANAGHF  298 (420)
T ss_pred             cCCcCccCHHHHHhccCCeEEeccccc
Confidence            999999988765   889999999943

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.23  E-value=3.6e-06  Score=83.01  Aligned_cols=93  Identities=26%  Similarity=0.388  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-----------------CCHHhhccCCcE
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-----------------KNPEEITRQADI  288 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-----------------~~L~~~l~~ADI  288 (375)
                      ...+++.+...-++.|++|+|||.|.+ |+.++..|...|+ .|++++++.                 .++.+.++++|+
T Consensus       163 ~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDv  241 (311)
T cd05213         163 SAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADV  241 (311)
T ss_pred             HHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCE
Confidence            345666666555689999999999886 9999999988774 799998762                 124566788999


Q ss_pred             EEEccCCCCc---ccC---CCcCCCcEEEEeeecCCCC
Q 017184          289 IISAVGQPNM---VRG---SWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       289 VIsAvG~p~~---I~~---~~vk~gavVIDvgin~~~~  320 (375)
                      ||+++|.|+.   +..   .+-+++.++||++.++.-+
T Consensus       242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence            9999998876   221   2223578999999877544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.08  E-value=2.5e-05  Score=82.29  Aligned_cols=90  Identities=26%  Similarity=0.461  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhCC----------CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------C---
Q 017184          227 KGCIELLHRYGF----------DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------N---  278 (375)
Q Consensus       227 ~gvi~lL~~~~i----------~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~---  278 (375)
                      .|+++..+.++-          .+.+.+|+|+|.|.+ |...+..+...|+.|+++.++..               +   
T Consensus       139 ~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e  217 (511)
T TIGR00561       139 RAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE  217 (511)
T ss_pred             HHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence            667777776653          245679999999886 99999999999999998865420               0   


Q ss_pred             -----------------------HHhhccCCcEEEEcc---C--CCCcccCCCc---CCCcEEEEeeecC
Q 017184          279 -----------------------PEEITRQADIIISAV---G--QPNMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       279 -----------------------L~~~l~~ADIVIsAv---G--~p~~I~~~~v---k~gavVIDvgin~  317 (375)
                                             +.++++++||||+++   |  .|.+++.+++   |+|.+|||+++.+
T Consensus       218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                                   345678999999999   5  4667888765   8999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.05  E-value=1.1e-05  Score=82.08  Aligned_cols=143  Identities=20%  Similarity=0.237  Sum_probs=92.9

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------CCCHHhhccCCcEEEEccCC-----
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITRQADIIISAVGQ-----  295 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------t~~L~~~l~~ADIVIsAvG~-----  295 (375)
                      +.+.++.+.++.||++.|||.|++ |+.++..|...|++|..+++.         ..+|++.+++||||+..++-     
T Consensus       104 L~l~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~  182 (378)
T PRK15438        104 LMLAERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGP  182 (378)
T ss_pred             HHHhccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcc
Confidence            334456788999999999999996 999999999999999999742         12588999999999977762     


Q ss_pred             ---CCcccCC---CcCCCcEEEEeeecCCCCCC-----CCCC--ceeecccchh------hhhhhcceeccCCCCccHHH
Q 017184          296 ---PNMVRGS---WIKPGAVIIDVGINPVEDAK-----SPRG--YRLVGDVCYE------EACEVASAITPVPGGVGPMT  356 (375)
Q Consensus       296 ---p~~I~~~---~vk~gavVIDvgin~~~~~~-----~~~g--~kl~GDVd~~------~v~~~a~~iTPVPGGVGp~T  356 (375)
                         -+++..+   .+|+|+++|++|--.+-|..     -..|  ....=||=..      ...+....+||=-+|.-.=+
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~  262 (378)
T PRK15438        183 YKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEG  262 (378)
T ss_pred             cccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHH
Confidence               1356553   56899999999965542210     0001  1234455211      11222337888888876544


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 017184          357 IAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       357 ~amLl~N~v~a~~~~~~  373 (375)
                      .......++++..++++
T Consensus       263 ~~~~~~~~~~~l~~~~~  279 (378)
T PRK15438        263 KARGTTQVFEAYSKFIG  279 (378)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            44434444444444443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.05  E-value=5.6e-05  Score=77.12  Aligned_cols=142  Identities=20%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCC-C----
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQ-P----  296 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~-p----  296 (375)
                      .+.++.+.++.||+|.|||.|++ |+.++..|...|++|..++...         .++++.+++||||+..++- +    
T Consensus       105 ~l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~  183 (381)
T PRK00257        105 TLAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEH  183 (381)
T ss_pred             HHhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccc
Confidence            34456788999999999999996 9999999999999999987431         2578899999999988873 2    


Q ss_pred             ---CcccCC---CcCCCcEEEEeeecCCCCCCC-----CCC--ceeecccchh------hhhhhcceeccCCCCccHHHH
Q 017184          297 ---NMVRGS---WIKPGAVIIDVGINPVEDAKS-----PRG--YRLVGDVCYE------EACEVASAITPVPGGVGPMTI  357 (375)
Q Consensus       297 ---~~I~~~---~vk~gavVIDvgin~~~~~~~-----~~g--~kl~GDVd~~------~v~~~a~~iTPVPGGVGp~T~  357 (375)
                         +++..+   .+|+|+++|+++--.+-+...     ..|  ....=||=..      ......-.+||=-+|...=+.
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~  263 (381)
T PRK00257        184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGK  263 (381)
T ss_pred             cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHH
Confidence               467654   569999999999665422100     011  0133455211      122224457887787765555


Q ss_pred             HHHHHHHHHHHHHHhc
Q 017184          358 AMLLSNTLTSAKRVHN  373 (375)
Q Consensus       358 amLl~N~v~a~~~~~~  373 (375)
                      .-....+++...++++
T Consensus       264 ~r~~~~~~~nl~~~~~  279 (381)
T PRK00257        264 ARGTAQIYQALCRFFG  279 (381)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            4455555555555554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.03  E-value=1.5e-05  Score=74.09  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             cCCHHHHHHHHH----Hh--CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH--------------Hhh
Q 017184          223 PCTPKGCIELLH----RY--GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP--------------EEI  282 (375)
Q Consensus       223 PcT~~gvi~lL~----~~--~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L--------------~~~  282 (375)
                      |.|.+|+...++    +.  +.+++||+++|+|.|+ ||+.++..|.+.|++|++++++...+              .+.
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l   81 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI   81 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence            678888755444    43  7899999999999998 59999999999999999987753211              122


Q ss_pred             c-cCCcEEEEccCCCCcccCCCcCC--CcEEEEeeecCCC
Q 017184          283 T-RQADIIISAVGQPNMVRGSWIKP--GAVIIDVGINPVE  319 (375)
Q Consensus       283 l-~~ADIVIsAvG~p~~I~~~~vk~--gavVIDvgin~~~  319 (375)
                      . .++||+|.++.. +.|+.+.++.  ..+|++-+-+|..
T Consensus        82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~~  120 (200)
T cd01075          82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQLA  120 (200)
T ss_pred             ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCccC
Confidence            2 379999966553 3565554432  4578887766553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.02  E-value=1.2e-05  Score=80.32  Aligned_cols=81  Identities=23%  Similarity=0.371  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       145 g~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~  223 (333)
T PRK13243        145 GYDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN  223 (333)
T ss_pred             ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC
Confidence            35789999999999996 9999999999999999987642            25778899999999999853    3565


Q ss_pred             C---CCcCCCcEEEEeeecCC
Q 017184          301 G---SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~  318 (375)
                      .   +.+|+|+++||++--..
T Consensus       224 ~~~~~~mk~ga~lIN~aRg~~  244 (333)
T PRK13243        224 EERLKLMKPTAILVNTARGKV  244 (333)
T ss_pred             HHHHhcCCCCeEEEECcCchh
Confidence            4   45699999999996654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.97  E-value=1.5e-05  Score=78.78  Aligned_cols=80  Identities=23%  Similarity=0.331  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCCC----CcccC---
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQP----NMVRG---  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~p----~~I~~---  301 (375)
                      ..+.||++.|||.|.+ |+++|.+|...|++|+.++++.         .++++.+++||+|+..++..    +++..   
T Consensus       118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l  196 (303)
T PRK06436        118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML  196 (303)
T ss_pred             CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence            4789999999999996 9999999988899999988642         36888999999999999842    35654   


Q ss_pred             CCcCCCcEEEEeeecCC
Q 017184          302 SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 ~~vk~gavVIDvgin~~  318 (375)
                      +.+|+|+++|++|--..
T Consensus       197 ~~mk~ga~lIN~sRG~~  213 (303)
T PRK06436        197 SLFRKGLAIINVARADV  213 (303)
T ss_pred             hcCCCCeEEEECCCccc
Confidence            35699999999997654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.97  E-value=6.6e-06  Score=81.56  Aligned_cols=77  Identities=36%  Similarity=0.538  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------------CCCHHhhccCCcEEEEccC----
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRQADIIISAVG----  294 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG----  294 (375)
                      +...+|+|||.|- ||.-.|++....||+||+...+                     ..++++.+++||+||.|+=    
T Consensus       166 V~~~kv~iiGGGv-vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGV-VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCcc-ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            3456799999866 6999999999999999999754                     1367899999999998873    


Q ss_pred             -CCCcccCCCc---CCCcEEEEeeecC
Q 017184          295 -QPNMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       295 -~p~~I~~~~v---k~gavVIDvgin~  317 (375)
                       .|.+++.+|+   |||+++|||+++.
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence             4778888865   8999999999975

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.97  E-value=1.3e-05  Score=79.39  Aligned_cols=80  Identities=26%  Similarity=0.410  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------CCHHhhccCCcEEEEccCC----CCcccCC---
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------KNPEEITRQADIIISAVGQ----PNMVRGS---  302 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------~~L~~~l~~ADIVIsAvG~----p~~I~~~---  302 (375)
                      .++.||++.|||.|.+ |+.+|.+|..-|++|..+++..        .+|.+.+++||+|+..++.    -++|+.+   
T Consensus       143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence            4689999999999997 9999999999999998776532        2578999999999999883    2467665   


Q ss_pred             CcCCCcEEEEeeecCC
Q 017184          303 WIKPGAVIIDVGINPV  318 (375)
Q Consensus       303 ~vk~gavVIDvgin~~  318 (375)
                      ++|+|+++|++|--.+
T Consensus       222 ~mk~ga~lIN~aRG~~  237 (314)
T PRK06932        222 LMKPTAFLINTGRGPL  237 (314)
T ss_pred             hCCCCeEEEECCCccc
Confidence            5699999999996544

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.94  E-value=1.7e-05  Score=78.66  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------CCHHhhccCCcEEEEccCC----CCcccCC---C
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------KNPEEITRQADIIISAVGQ----PNMVRGS---W  303 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------~~L~~~l~~ADIVIsAvG~----p~~I~~~---~  303 (375)
                      .++.||++.|||.|.+ |+.+|.+|..-|++|...++..       .+|.+.+++||+|+..++.    -++|+.+   .
T Consensus       144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~  222 (317)
T PRK06487        144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL  222 (317)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence            4689999999999997 9999999999999998776542       2588999999999999884    2467765   5


Q ss_pred             cCCCcEEEEeeecCC
Q 017184          304 IKPGAVIIDVGINPV  318 (375)
Q Consensus       304 vk~gavVIDvgin~~  318 (375)
                      +|+|+++|++|--.+
T Consensus       223 mk~ga~lIN~aRG~v  237 (317)
T PRK06487        223 MKPGALLINTARGGL  237 (317)
T ss_pred             CCCCeEEEECCCccc
Confidence            699999999996544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.94  E-value=2e-05  Score=77.95  Aligned_cols=80  Identities=30%  Similarity=0.371  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCC----CCcccCC--
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQ----PNMVRGS--  302 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~----p~~I~~~--  302 (375)
                      .++.||++.|||.|.+ |+.+|.+|..-|++|..+++..         .++++.+++||+|+..++.    -++|..+  
T Consensus       141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            4789999999999997 9999999999999999887642         2578999999999998883    2467664  


Q ss_pred             -CcCCCcEEEEeeecCC
Q 017184          303 -WIKPGAVIIDVGINPV  318 (375)
Q Consensus       303 -~vk~gavVIDvgin~~  318 (375)
                       .+|+|+++|+++--.+
T Consensus       220 ~~Mk~~a~lIN~aRG~v  236 (311)
T PRK08410        220 KLLKDGAILINVGRGGI  236 (311)
T ss_pred             HhCCCCeEEEECCCccc
Confidence             5699999999996654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.92  E-value=2.1e-05  Score=78.06  Aligned_cols=80  Identities=11%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----CcccC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVRG  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~~  301 (375)
                      ..++||+|.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+...+..    +++..
T Consensus       132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4689999999999996 9999999999999998886542            25788899999999998843    24554


Q ss_pred             ---CCcCCCcEEEEeeecCC
Q 017184          302 ---SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 ---~~vk~gavVIDvgin~~  318 (375)
                         +.+|+|+++|++|--.+
T Consensus       211 ~~l~~mk~ga~lIN~aRG~v  230 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVH  230 (312)
T ss_pred             HHHhcCCCCcEEEECCCccc
Confidence               35699999999996554

>PRK07574 formate dehydrogenase; Provisional

Probab=97.92  E-value=2e-05  Score=80.52  Aligned_cols=133  Identities=15%  Similarity=0.255  Sum_probs=88.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCC----Ccc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      .++.||+|.|||.|.+ |+.+|..|...|++|..++++.              .++++.+++||+|+..++..    +++
T Consensus       188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence            4689999999999996 9999999999999999988652              35788899999999999843    356


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCC-----CCCCce---eecccchhhh-------hh-hcceeccCCCCccHHHHHHH
Q 017184          300 RGS---WIKPGAVIIDVGINPVEDAK-----SPRGYR---LVGDVCYEEA-------CE-VASAITPVPGGVGPMTIAML  360 (375)
Q Consensus       300 ~~~---~vk~gavVIDvgin~~~~~~-----~~~g~k---l~GDVd~~~v-------~~-~a~~iTPVPGGVGp~T~amL  360 (375)
                      +.+   .+|+|+++||++--.+-+..     -..| +   ...||=+.+=       .+ -.-.+||=-+|.-.=+..-+
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG-~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~  345 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG-HLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARY  345 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC-CccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHH
Confidence            553   56999999999865432100     0001 2   3456633210       00 12257887777654444444


Q ss_pred             HHHHHHHHHHHh
Q 017184          361 LSNTLTSAKRVH  372 (375)
Q Consensus       361 l~N~v~a~~~~~  372 (375)
                      ...+++..++|+
T Consensus       346 ~~~~~~ni~~~~  357 (385)
T PRK07574        346 AAGTREILECFF  357 (385)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=97.92  E-value=3.5e-05  Score=75.23  Aligned_cols=94  Identities=14%  Similarity=0.266  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHH-hhccC
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------NPE-EITRQ  285 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~-~~l~~  285 (375)
                      .++++-.++.|++++..+|.|+|+-+.+|..++..|..+++...+++|...                    ++. +++..
T Consensus       152 r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         152 RQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQE  231 (351)
T ss_pred             HHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccccccc
Confidence            345677778899999999999999999999999999999988888875420                    122 34444


Q ss_pred             CcEEEEccCCCCc-ccCCCcCCCcEEEEeeecCCCC
Q 017184          286 ADIIISAVGQPNM-VRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       286 ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~~~~  320 (375)
                      +|+|.+|+-.++. |.+.++|||++++|-|++.+-+
T Consensus       232 ~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dvd  267 (351)
T COG5322         232 DILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDVD  267 (351)
T ss_pred             ceEEEEeecCCCceechhhccCCeEEEcCCcCcccc
Confidence            4555577776665 8999999999999999987644

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.89  E-value=2.2e-05  Score=78.44  Aligned_cols=80  Identities=23%  Similarity=0.335  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccC--
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRG--  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~--  301 (375)
                      .++.|+++.|||.|.+ |+++|.+|...|++|+.++++.          .++.+.+++||+|+.+++..    +++..  
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~  220 (330)
T PRK12480        142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM  220 (330)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence            4689999999999996 9999999999999999987542          36788999999999999854    24433  


Q ss_pred             -CCcCCCcEEEEeeecCC
Q 017184          302 -SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 -~~vk~gavVIDvgin~~  318 (375)
                       ..+|+|+++|+++--.+
T Consensus       221 l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        221 FDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HhcCCCCcEEEEcCCccc
Confidence             35689999999986543

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.87  E-value=3.5e-05  Score=76.92  Aligned_cols=81  Identities=22%  Similarity=0.313  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHH-hhCCCeEEEEcCCC-----------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSRT-----------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL-~~~gAtVtv~hs~t-----------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.|++|.|||.|.+ |+.+|..| ...|++|+..+++.           .++.+.+++||+|+.+++..    +++.
T Consensus       141 ~~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~  219 (332)
T PRK08605        141 SRSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN  219 (332)
T ss_pred             cceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcC
Confidence            34689999999999996 99999999 55688998887542           36888999999999998853    3454


Q ss_pred             C---CCcCCCcEEEEeeecCC
Q 017184          301 G---SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~  318 (375)
                      .   +++|+|+++||++--..
T Consensus       220 ~~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        220 ADLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHHhcCCCCcEEEECCCCcc
Confidence            3   46799999999986543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.86  E-value=3.8e-05  Score=76.31  Aligned_cols=75  Identities=17%  Similarity=0.333  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHh-hCC-CeEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQ-RED-ATVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~-~~g-AtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ..++++|||.|+. |+..+..|. .++ .+|++++|+.                     .++++.+++|||||++|+.+.
T Consensus       128 ~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET  206 (326)
T ss_pred             CCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence            5789999999997 999988886 466 4799998762                     346678899999999999766


Q ss_pred             c-ccCCCcCCCcEEEEeeec
Q 017184          298 M-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~-I~~~~vk~gavVIDvgin  316 (375)
                      . ++.+|+++|+.|.++|.+
T Consensus       207 p~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       207 PILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             cEecHHHcCCCcEEEeeCCC
Confidence            4 788999999999999964

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.82  E-value=3.8e-05  Score=76.73  Aligned_cols=82  Identities=24%  Similarity=0.353  Sum_probs=68.5

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCC----Cc
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQP----NM  298 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p----~~  298 (375)
                      .+.++.||++-|||.|.+ |+.++..|..-|+.|..+++..             .+|.+.+++||||+.-++..    ++
T Consensus       136 ~g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         136 RGTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             ccccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            356889999999999997 9999999999999999998742             35889999999999998842    46


Q ss_pred             ccCC---CcCCCcEEEEeeecCC
Q 017184          299 VRGS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       299 I~~~---~vk~gavVIDvgin~~  318 (375)
                      |+.+   .+|+|+++|+++--.+
T Consensus       215 i~~~~~a~MK~gailIN~aRG~v  237 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGV  237 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcce
Confidence            7664   4699999999985543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.81  E-value=3.7e-05  Score=76.58  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHh-hCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCC-C---Ccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQ-REDATVSIVHSRT------------KNPEEITRQADIIISAVGQ-P---NMV  299 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~-~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~-p---~~I  299 (375)
                      +.+|.||++.|||.|.+ |+.++..|. .-|++|...+++.            .++.+.+++||+|+..++. |   ++|
T Consensus       140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            45799999999999997 999999997 7899988776542            2578899999999998884 2   467


Q ss_pred             cCC---CcCCCcEEEEeeecCC
Q 017184          300 RGS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       300 ~~~---~vk~gavVIDvgin~~  318 (375)
                      ..+   .+|+|+++|+++--.+
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~v  240 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPV  240 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccc
Confidence            664   5699999999986554

>PLN02306 hydroxypyruvate reductase

Probab=97.80  E-value=3.8e-05  Score=78.43  Aligned_cols=80  Identities=24%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHh-hCCCeEEEEcCC----------------------------CCCHHhhccCCc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQ-REDATVSIVHSR----------------------------TKNPEEITRQAD  287 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~-~~gAtVtv~hs~----------------------------t~~L~~~l~~AD  287 (375)
                      +.++.||++.|||.|.+ |+.+|.+|. .-|++|..++++                            ..+|++.+++||
T Consensus       160 g~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sD  238 (386)
T PLN02306        160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREAD  238 (386)
T ss_pred             CcCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCC
Confidence            34689999999999997 999999985 789999887642                            136889999999


Q ss_pred             EEEEccCC----CCcccCC---CcCCCcEEEEeeecC
Q 017184          288 IIISAVGQ----PNMVRGS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       288 IVIsAvG~----p~~I~~~---~vk~gavVIDvgin~  317 (375)
                      ||+..++.    .++|+.+   ++|+|+++|++|--.
T Consensus       239 iV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~  275 (386)
T PLN02306        239 VISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGP  275 (386)
T ss_pred             EEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcc
Confidence            99988773    2467664   569999999999544

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.80  E-value=3.4e-05  Score=76.43  Aligned_cols=82  Identities=28%  Similarity=0.384  Sum_probs=70.5

Q ss_pred             HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCCcccC
Q 017184          235 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPNMVRG  301 (375)
Q Consensus       235 ~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~~I~~  301 (375)
                      ...+-+.||.+||.|.|. |||-.|..|...|+.|+|..-..             ..+++.++++||+|+++|.-+.|..
T Consensus       207 aTDvM~aGKv~Vv~GYGd-VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~  285 (434)
T KOG1370|consen  207 ATDVMIAGKVAVVCGYGD-VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITG  285 (434)
T ss_pred             hhhheecccEEEEeccCc-cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhH
Confidence            356778999999999999 59999999999999999986442             3578999999999999999999877


Q ss_pred             CCc---CCCcEEEEeeecC
Q 017184          302 SWI---KPGAVIIDVGINP  317 (375)
Q Consensus       302 ~~v---k~gavVIDvgin~  317 (375)
                      +++   |.+++|.++|+.-
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             HHHHhCcCCcEEecccccc
Confidence            655   7899999999764

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.78  E-value=4.3e-05  Score=71.26  Aligned_cols=112  Identities=19%  Similarity=0.321  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-CCH-----------------HhhccCCcEEEEccCCCCc-
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNP-----------------EEITRQADIIISAVGQPNM-  298 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~~L-----------------~~~l~~ADIVIsAvG~p~~-  298 (375)
                      ++++||+|+|||.|.+ |.-.+..|+..|+.|+++...- +.+                 .+.+..+|+||+|++.+.+ 
T Consensus         6 l~l~~k~vLVIGgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKV-AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence            5789999999999985 9999999999999999986542 111                 2457889999999998764 


Q ss_pred             --ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhh---cceeccCCCCccHHHHHHHHHHHH
Q 017184          299 --VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV---ASAITPVPGGVGPMTIAMLLSNTL  365 (375)
Q Consensus       299 --I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~---a~~iTPVPGGVGp~T~amLl~N~v  365 (375)
                        |.... +.+. .+++.-++..           +|+-|..+.+.   .-+|+  -||.+|..+..|=+++-
T Consensus        85 ~~i~~~a-~~~~-lvn~~d~~~~-----------~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie  141 (202)
T PRK06718         85 EQVKEDL-PENA-LFNVITDAES-----------GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELE  141 (202)
T ss_pred             HHHHHHH-HhCC-cEEECCCCcc-----------CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHH
Confidence              43333 4454 4444423211           23333332222   22343  47889988877655444

>PLN03139 formate dehydrogenase; Provisional

Probab=97.76  E-value=4.9e-05  Score=77.63  Aligned_cols=133  Identities=17%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCC----Ccc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      .++.||+|.|||.|.+ |+.++..|...|+.|..++++.              .++++.++++|+|+..++..    +++
T Consensus       195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence            4799999999999996 9999999999999999887541              26888999999999998843    256


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCC-----CCCCce---eecccchhhhh-------h-hcceeccCCCCccHHHHHHH
Q 017184          300 RGS---WIKPGAVIIDVGINPVEDAK-----SPRGYR---LVGDVCYEEAC-------E-VASAITPVPGGVGPMTIAML  360 (375)
Q Consensus       300 ~~~---~vk~gavVIDvgin~~~~~~-----~~~g~k---l~GDVd~~~v~-------~-~a~~iTPVPGGVGp~T~amL  360 (375)
                      +.+   .+|+|+++||++--.+-|..     -..| +   ...||=+.+=.       . -.-.+||=-+|.-.-+..-+
T Consensus       274 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG-~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~  352 (386)
T PLN03139        274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG-HIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRY  352 (386)
T ss_pred             CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC-CceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHH
Confidence            554   56999999999965432200     0011 3   34577432210       0 12357777777654444444


Q ss_pred             HHHHHHHHHHHh
Q 017184          361 LSNTLTSAKRVH  372 (375)
Q Consensus       361 l~N~v~a~~~~~  372 (375)
                      ...+++..++|+
T Consensus       353 ~~~~~~nl~~~~  364 (386)
T PLN03139        353 AAGVKDMLDRYF  364 (386)
T ss_pred             HHHHHHHHHHHH
Confidence            444445445554

>PRK12862 malic enzyme; Reviewed

Probab=97.73  E-value=0.00022  Score=78.54  Aligned_cols=172  Identities=15%  Similarity=0.232  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccc
Q 017184          129 ATYVRNKKKACQSVG-INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPL  207 (375)
Q Consensus       129 ~~Yv~~k~k~a~~~G-I~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~  207 (375)
                      .--...|.-.++.+| |++.-+.+... +.+|+++.++.+-  |++-||++.=  -..-+--+|++....+-|+.-||. 
T Consensus        94 ~pv~egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~ED--~~~~~~f~i~~~~~~~~~ip~f~D-  167 (763)
T PRK12862         94 KPVMEGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINLED--IKAPECFYIERELRERMKIPVFHD-  167 (763)
T ss_pred             cchHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeeeec--ccCchHHHHHHHHHhcCCCceEec-
Confidence            444567777777765 88877877643 7799999999987  7788877641  111123455555544445555552 


Q ss_pred             hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCC---------
Q 017184          208 NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSR---------  275 (375)
Q Consensus       208 N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~---------  275 (375)
                               +..+-.-.+..|++..++-.+.+++.-++|+.|+|.. |..++.+|...|.   .+++|+++         
T Consensus       168 ---------D~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~  237 (763)
T PRK12862        168 ---------DQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTE  237 (763)
T ss_pred             ---------CcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCc
Confidence                     2333334556788999999999999999999999998 9999999999997   68898754         


Q ss_pred             --------------CCCHHhhccCCcEEEEccCCCCcccCCCcCC---CcEEEEeeecCC
Q 017184          276 --------------TKNPEEITRQADIIISAVGQPNMVRGSWIKP---GAVIIDVGINPV  318 (375)
Q Consensus       276 --------------t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~---gavVIDvgin~~  318 (375)
                                    ..+|.+.++.+|++|-..+ |+.++++|++.   .-+|+=+. ||.
T Consensus       238 ~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  295 (763)
T PRK12862        238 LMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT  295 (763)
T ss_pred             cccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence                          1358899999999998777 89999999854   66777766 443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.72  E-value=7.5e-05  Score=76.69  Aligned_cols=79  Identities=25%  Similarity=0.459  Sum_probs=66.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRGS  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~~  302 (375)
                      +.+|.||++.|||.|.+ |+.+|.+|...|++|..++++.          .++++.+++||+|+..++..    +++..+
T Consensus       146 ~~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~  224 (409)
T PRK11790        146 SFEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE  224 (409)
T ss_pred             cccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence            35799999999999997 9999999999999999887542          26899999999999998842    367654


Q ss_pred             ---CcCCCcEEEEeeec
Q 017184          303 ---WIKPGAVIIDVGIN  316 (375)
Q Consensus       303 ---~vk~gavVIDvgin  316 (375)
                         .+|+|+++|+++--
T Consensus       225 ~l~~mk~ga~lIN~aRG  241 (409)
T PRK11790        225 ELALMKPGAILINASRG  241 (409)
T ss_pred             HHhcCCCCeEEEECCCC
Confidence               56999999999943

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.69  E-value=2.5e-05  Score=70.29  Aligned_cols=78  Identities=31%  Similarity=0.458  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------C------------------------CC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------T------------------------KN  278 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------t------------------------~~  278 (375)
                      .+..++|+|+|.|. ||+.++.+|...|++|++.+..                +                        ..
T Consensus        17 ~~~p~~vvv~G~G~-vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   17 GVPPAKVVVTGAGR-VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             EE-T-EEEEESTSH-HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCeEEEEECCCH-HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            34678999999988 5999999999999999998643                1                        13


Q ss_pred             HHhhccCCcEEEEcc-----CCCCcccCCCc---CCCcEEEEeeecC
Q 017184          279 PEEITRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       279 L~~~l~~ADIVIsAv-----G~p~~I~~~~v---k~gavVIDvgin~  317 (375)
                      +.+.++.+|+||+++     ..|.+|+.+++   ++|.+|+|+.+..
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            567889999999654     25778988765   8899999998764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.69  E-value=0.00029  Score=77.47  Aligned_cols=172  Identities=16%  Similarity=0.245  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccc
Q 017184          129 ATYVRNKKKACQSVG-INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPL  207 (375)
Q Consensus       129 ~~Yv~~k~k~a~~~G-I~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~  207 (375)
                      .--.+.|.-.++.+| |++..+.+... +.+|+++.++.+-  |++-||++.==  ..-+--+|++....+-|+.-||.-
T Consensus        86 ~pv~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~ED~--~~p~~f~i~~~~~~~~~ip~f~DD  160 (752)
T PRK07232         86 KPVMEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLEDI--KAPECFYIEEKLRERMDIPVFHDD  160 (752)
T ss_pred             ccHHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeeeec--CCchHHHHHHHHHHhcCCCeeccc
Confidence            444567777777765 88877777643 6789999998887  77888886411  111234455555444455555532


Q ss_pred             hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCC---------
Q 017184          208 NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSR---------  275 (375)
Q Consensus       208 N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~---------  275 (375)
                                ..+-.-.+..|++..|+-.+.+++.-++++.|+|.. |-.++.+|...|.   .+++|+++         
T Consensus       161 ----------~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~  229 (752)
T PRK07232        161 ----------QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRTE  229 (752)
T ss_pred             ----------cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCcc
Confidence                      333333455788999999999999999999999997 9999999999987   68898754         


Q ss_pred             --------------CCCHHhhccCCcEEEEccCCCCcccCCCcCC---CcEEEEeeecCC
Q 017184          276 --------------TKNPEEITRQADIIISAVGQPNMVRGSWIKP---GAVIIDVGINPV  318 (375)
Q Consensus       276 --------------t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~---gavVIDvgin~~  318 (375)
                                    ..+|.+.++.+|++|-..+ |+.++++|++.   ..+|+=+. ||.
T Consensus       230 ~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  287 (752)
T PRK07232        230 GMDEWKAAYAVDTDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD  287 (752)
T ss_pred             cccHHHHHHhccCCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence                          1368899999999997777 89999999854   66777776 443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.68  E-value=8.2e-05  Score=78.67  Aligned_cols=81  Identities=21%  Similarity=0.275  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEccCCC----Ccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++             ..++.+.+++||+|+..++..    +++
T Consensus       133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  211 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI  211 (525)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence            45799999999999996 999999999999999998763             136889999999999999843    356


Q ss_pred             cCC---CcCCCcEEEEeeecCC
Q 017184          300 RGS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       300 ~~~---~vk~gavVIDvgin~~  318 (375)
                      ..+   .+|+|+++||++--.+
T Consensus       212 ~~~~l~~mk~ga~lIN~aRG~~  233 (525)
T TIGR01327       212 GAEELAKMKKGVIIVNCARGGI  233 (525)
T ss_pred             CHHHHhcCCCCeEEEEcCCCce
Confidence            543   5699999999996554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.67  E-value=0.00016  Score=71.94  Aligned_cols=87  Identities=21%  Similarity=0.336  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCC---------------------CCCHHhhc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSR---------------------TKNPEEIT  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~---------------------t~~L~~~l  283 (375)
                      .+++......  .-..++++|||+|+. |+..+..|.. ++ .+|++++|+                     ..++++.+
T Consensus       119 ~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al  195 (330)
T PRK08291        119 AGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAV  195 (330)
T ss_pred             HHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHH
Confidence            5555555322  335689999999997 9987777764 55 479999876                     13566788


Q ss_pred             cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                      ++|||||++++.... ++.+|+++|+.|+.+|.+
T Consensus       196 ~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        196 AGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD  229 (330)
T ss_pred             ccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence            999999999997664 788999999999999865

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.67  E-value=9.2e-05  Score=78.29  Aligned_cols=81  Identities=22%  Similarity=0.288  Sum_probs=66.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       135 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~  213 (526)
T PRK13581        135 GVELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG  213 (526)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcC
Confidence            35689999999999996 9999999999999999987631            15788999999999999853    4565


Q ss_pred             CC---CcCCCcEEEEeeecCC
Q 017184          301 GS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~~  318 (375)
                      .+   .+|+|+++||++--.+
T Consensus       214 ~~~l~~mk~ga~lIN~aRG~~  234 (526)
T PRK13581        214 AEELAKMKPGVRIINCARGGI  234 (526)
T ss_pred             HHHHhcCCCCeEEEECCCCce
Confidence            43   5699999999996544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.60  E-value=0.00032  Score=69.65  Aligned_cols=74  Identities=20%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHh-hCCC-eEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQ-REDA-TVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~-~~gA-tVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ..++++|||.|+. |+..+..++ .+++ +|++++++.                     .++++.++++||||++++.++
T Consensus       126 ~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        126 DAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence            5789999999997 988776654 4564 788887751                     346678899999999999877


Q ss_pred             c-ccCCCcCCCcEEEEeeec
Q 017184          298 M-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~-I~~~~vk~gavVIDvgin  316 (375)
                      . +. +|+++|+.|+-+|.+
T Consensus       205 p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        205 PVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             cchH-HhcCCCcEEEecCCC
Confidence            5 68 999999999999865

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.58  E-value=0.00026  Score=74.78  Aligned_cols=90  Identities=27%  Similarity=0.446  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhCC----------CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------
Q 017184          227 KGCIELLHRYGF----------DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------  276 (375)
Q Consensus       227 ~gvi~lL~~~~i----------~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------  276 (375)
                      .++++..++++.          ...|.+|+|+|.|.+ |...+..+...||.|+++..+.                    
T Consensus       140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e  218 (509)
T PRK09424        140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEE  218 (509)
T ss_pred             HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence            677777776653          346899999999886 9999999999999988876541                    


Q ss_pred             -------------CC--------HHhhccCCcEEEEccCCCC-----cccCCC---cCCCcEEEEeeecC
Q 017184          277 -------------KN--------PEEITRQADIIISAVGQPN-----MVRGSW---IKPGAVIIDVGINP  317 (375)
Q Consensus       277 -------------~~--------L~~~l~~ADIVIsAvG~p~-----~I~~~~---vk~gavVIDvgin~  317 (375)
                                   .+        +.+.++.+|+||.++|.|.     +++.++   +|+|.+|+|+|+.+
T Consensus       219 ~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~  288 (509)
T PRK09424        219 EGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN  288 (509)
T ss_pred             ccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence                         01        0122367999999999744     565554   58999999999863

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.55  E-value=0.00034  Score=69.24  Aligned_cols=77  Identities=30%  Similarity=0.380  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT--------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      ....|++.|||.|.. |++.+..+.. ++ .+|++++|+.                    .++++.+++|||||++++.+
T Consensus       122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            346899999999986 9999875543 44 6899998752                    24567789999999999987


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 017184          297 NM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       297 ~~-I~~~~vk~gavVIDvgin  316 (375)
                      .. ++.+|+++|+.|.=+|.+
T Consensus       201 ~pvl~~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        201 EPLVRGEWLKPGTHLDLVGNF  221 (314)
T ss_pred             CCEecHHHcCCCCEEEeeCCC
Confidence            65 788999999954445543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.53  E-value=0.00015  Score=72.43  Aligned_cols=81  Identities=25%  Similarity=0.403  Sum_probs=66.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCC----CCccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQ----PNMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~----p~~I~  300 (375)
                      +.+++||++-|||.|.+ |+.+|..+..-|+.|...+++.            -++.+.+++||||+..++-    -|+|.
T Consensus       141 ~~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin  219 (324)
T COG1052         141 GFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLIN  219 (324)
T ss_pred             ccCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcC
Confidence            46899999999999997 9999999998889999888663            1377999999999988873    24676


Q ss_pred             CC---CcCCCcEEEEeeecCC
Q 017184          301 GS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~~  318 (375)
                      .+   .+|+|+++|++|--.+
T Consensus       220 ~~~l~~mk~ga~lVNtaRG~~  240 (324)
T COG1052         220 AEELAKMKPGAILVNTARGGL  240 (324)
T ss_pred             HHHHHhCCCCeEEEECCCccc
Confidence            65   5699999999985543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.51  E-value=0.00012  Score=65.45  Aligned_cols=74  Identities=26%  Similarity=0.408  Sum_probs=55.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cc-c---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MV-R---  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I-~---  300 (375)
                      ++|-+||-|.+ |.+++..|++.|.+|++++++.              .++.+.++++|+||+++..+.    .+ .   
T Consensus         2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            58999999986 9999999999999999999873              467788999999999998643    12 2   


Q ss_pred             CCCcCCCcEEEEeeecC
Q 017184          301 GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~~~vk~gavVIDvgin~  317 (375)
                      ...+++|.++||.+...
T Consensus        81 ~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGGS-TTEEEEE-SS--
T ss_pred             hhccccceEEEecCCcc
Confidence            24568899999998653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.50  E-value=0.00046  Score=70.94  Aligned_cols=170  Identities=17%  Similarity=0.260  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCC-CCCCCCHHHHHhhCCcccccCcc
Q 017184          127 DSATYVRNKKKACQSV-GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLP-LPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~-GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlP-Lp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      ++.--.+.|.-.++++ ||++.-+.++. -+.+|+.+.|+.+.  |.+-||+++-= .|+   -..+...+.-+.||.-|
T Consensus        98 ag~pVmeGKa~Lfk~faGid~~pI~ld~-~~~~ei~~~Vkal~--p~FgginLedi~ap~---cf~ie~~lr~~~~IPvF  171 (432)
T COG0281          98 AGKPVMEGKAVLFKAFAGIDVLPIELDV-GTNNEIIEFVKALE--PTFGGINLEDIDAPR---CFAIEERLRYRMNIPVF  171 (432)
T ss_pred             cCcchhhhHHHHHHHhcCCCceeeEeeC-CChHHHHHHHHHhh--hcCCCcceeecccch---hhHHHHHHhhcCCCCcc
Confidence            4444566787777775 69999899875 46678999999997  57999998732 122   12344455557777777


Q ss_pred             ccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC-----
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT-----  276 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t-----  276 (375)
                      |.--          .+-.--|..|++..|+-.|.+|+..++++.|+|-. |-.++.+|...|.   .|++|+|+-     
T Consensus       172 hDDq----------qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~  240 (432)
T COG0281         172 HDDQ----------QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDG  240 (432)
T ss_pred             cccc----------cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCC
Confidence            6433          22222345788999999999999999999999987 9999999999997   599998761     


Q ss_pred             -CCH-------------------HhhccCCcEEEEccCCCCcccCCCcCC---CcEEEEee
Q 017184          277 -KNP-------------------EEITRQADIIISAVGQPNMVRGSWIKP---GAVIIDVG  314 (375)
Q Consensus       277 -~~L-------------------~~~l~~ADIVIsAvG~p~~I~~~~vk~---gavVIDvg  314 (375)
                       .++                   .+.+..||++|...|. +.+++|||+.   +.+|+=+.
T Consensus       241 r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala  300 (432)
T COG0281         241 REDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA  300 (432)
T ss_pred             CcccccchHHHHHHHhhhccccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC
Confidence             110                   2346789999988887 8899998854   45666665

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.48  E-value=0.00068  Score=66.92  Aligned_cols=77  Identities=13%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhh-CCC-eEEEEcCCC-------------------CCHHhhccCCcEEEEccCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQR-EDA-TVSIVHSRT-------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~-~gA-tVtv~hs~t-------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      -+...++++|||.|.. |+..+..+.. ++. +|.+++++.                   .++++.+++|||||++|+.+
T Consensus       121 a~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        121 APAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             CCCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence            3457899999999996 9999888864 554 689888751                   25677889999999999988


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 017184          297 NM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       297 ~~-I~~~~vk~gavVIDvgin  316 (375)
                      +. ++. |+|||+.|.=+|.+
T Consensus       200 ~Pl~~~-~~~~g~hi~~iGs~  219 (304)
T PRK07340        200 TPVYPE-AARAGRLVVAVGAF  219 (304)
T ss_pred             CceeCc-cCCCCCEEEecCCC
Confidence            76 565 89999999999965

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.45  E-value=0.00017  Score=59.93  Aligned_cols=60  Identities=30%  Similarity=0.520  Sum_probs=46.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------CCHHhhccCCcEEEEccCCCCc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------KNPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------~~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      ++++||+|+|||.|.+ |..-+..|++.||+|+++....           +.+++.+..+|+||.|++.+.+
T Consensus         3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~   73 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPEL   73 (103)
T ss_dssp             E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHH
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHH
Confidence            4789999999999995 9999999999999999997662           3456778899999999987653

>PRK12861 malic enzyme; Reviewed

Probab=97.38  E-value=0.00078  Score=74.20  Aligned_cols=172  Identities=16%  Similarity=0.221  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccc
Q 017184          129 ATYVRNKKKACQSVG-INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPL  207 (375)
Q Consensus       129 ~~Yv~~k~k~a~~~G-I~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~  207 (375)
                      .--.+.|.-.++++| |++..+.+.. -+.+|+++.++.+.  |.+-||++.  =-..-+--+|++....+=|+.-||.-
T Consensus        90 ~pvmeGK~~L~~~~agid~~di~~~~-~dpd~~v~~v~a~~--~~fg~i~lE--D~~~p~~f~il~~~~~~~~ipvf~DD  164 (764)
T PRK12861         90 KPVMEGKAVLFKKFAGIDVFDIEINE-TDPDKLVDIIAGLE--PTFGGINLE--DIKAPECFTVERKLRERMKIPVFHDD  164 (764)
T ss_pred             cchHHHHHHHHhhccCCCccccccCC-CCHHHHHHHHHHHH--hhcCCceee--eccCchHHHHHHHHHhcCCCCeeccc
Confidence            344567777777765 8987777764 56789999998887  467775542  11111233444444332255555532


Q ss_pred             hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCC---------
Q 017184          208 NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSR---------  275 (375)
Q Consensus       208 N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~---------  275 (375)
                                ..+-.-.+..|++..|+-.+.+++.-++|+.|+|-. |..++.+|...|.   .+++|+++         
T Consensus       165 ----------~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~  233 (764)
T PRK12861        165 ----------QHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT  233 (764)
T ss_pred             ----------cchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence                      223223455788999999999999999999999998 9999999999998   68999754         


Q ss_pred             --------------CCCHHhhccCCcEEEEccCCCCcccCCCcCC---CcEEEEeeecCC
Q 017184          276 --------------TKNPEEITRQADIIISAVGQPNMVRGSWIKP---GAVIIDVGINPV  318 (375)
Q Consensus       276 --------------t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~---gavVIDvgin~~  318 (375)
                                    ..+|.+.++.+|++|-..+ |+.+++||++.   ..+|+=+. ||.
T Consensus       234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt  291 (764)
T PRK12861        234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT  291 (764)
T ss_pred             cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence                          1358899999999997776 89999999854   66777776 554

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=97.36  E-value=0.00017  Score=58.06  Aligned_cols=48  Identities=13%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCC
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPC  184 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~  184 (375)
                      .-++.+++.|++..|..++  +.++++.+.++.+.. +++.|++|++|+++
T Consensus        14 ~hn~~f~~~g~~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~~VT~P~K~   61 (83)
T PF08501_consen   14 IHNAAFEALGLDAVYIPFE--VEPEDLEDFLDALRA-PNFRGLNVTMPHKE   61 (83)
T ss_dssp             HHHHHHHHTTSSEEEEEEE--TSTTCHHHHHHHHHH-TTESEEEE-TTSTT
T ss_pred             HHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHhc-CCCCeeeecchHHH
Confidence            3468899999999999986  567788888888888 78999999999986

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.33  E-value=0.00033  Score=62.87  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-CCCH--------------HhhccCCcEEEEccCCCCc---
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-TKNP--------------EEITRQADIIISAVGQPNM---  298 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-t~~L--------------~~~l~~ADIVIsAvG~p~~---  298 (375)
                      .++++||+|+|||.|.+ |.-.+..|+..|++|+++... .+++              ++.+.++|+||.+++.+..   
T Consensus         8 ~l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~   86 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM   86 (157)
T ss_pred             EEEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence            36899999999999995 999999999999999998533 1112              1347889999999997653   


Q ss_pred             ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhh---hcceeccCCCCccHHHHHHHHHHHHHH
Q 017184          299 VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE---VASAITPVPGGVGPMTIAMLLSNTLTS  367 (375)
Q Consensus       299 I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~---~a~~iTPVPGGVGp~T~amLl~N~v~a  367 (375)
                      +. .+-+.+. .+++.-++..           +|+-|....+   ..-+++  -||-+|.-+..|=+++-+.
T Consensus        87 i~-~~a~~~~-~vn~~d~~~~-----------~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~~  143 (157)
T PRK06719         87 VK-QAAHDFQ-WVNVVSDGTE-----------SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTSI  143 (157)
T ss_pred             HH-HHHHHCC-cEEECCCCCc-----------CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHHH
Confidence            21 1223333 3343322211           2222222111   122343  4788998887776655443

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.31  E-value=0.00047  Score=67.70  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-CCHHhhccCCcEEEEccCCCCc---c---cCCCcCCCcEEEEe
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNPEEITRQADIIISAVGQPNM---V---RGSWIKPGAVIIDV  313 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~~L~~~l~~ADIVIsAvG~p~~---I---~~~~vk~gavVIDv  313 (375)
                      .+++|.|||.|.. |.+++..|.+.|.+|++.+|+. .++.+.+++||+||.+++....   +   .+..++++.++||.
T Consensus         3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619          3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            5679999999885 9999999999999999998764 5788889999999999986432   2   22236788999997


Q ss_pred             e
Q 017184          314 G  314 (375)
Q Consensus       314 g  314 (375)
                      .
T Consensus        82 s   82 (308)
T PRK14619         82 T   82 (308)
T ss_pred             C
Confidence            5

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.28  E-value=0.00044  Score=68.14  Aligned_cols=73  Identities=25%  Similarity=0.426  Sum_probs=59.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCc-----ccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------KNPEEITRQADIIISAVGQPNM-----VRGS  302 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~-----I~~~  302 (375)
                      .+|..||-|.. |.|+|..|.+.|.+|++.+|+.               .+..+..++||+||+.++.+.-     ..++
T Consensus         1 ~kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence            36899999986 9999999999999999999873               2445789999999999996542     2223


Q ss_pred             ----CcCCCcEEEEeeec
Q 017184          303 ----WIKPGAVIIDVGIN  316 (375)
Q Consensus       303 ----~vk~gavVIDvgin  316 (375)
                          ..++|.++||....
T Consensus        80 g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          80 GLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             chhhcCCCCCEEEECCCC
Confidence                45789999999865

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.25  E-value=0.00045  Score=69.42  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=62.2

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhccCCcEEEEccCCC----Ccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      +.+++||+|.|+|.|.+ |+.+|..|..-|+.+.-+.|+..             ++.+.++++|+||.+.+--    +++
T Consensus       157 g~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~li  235 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLI  235 (336)
T ss_pred             cccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHh
Confidence            56789999999999997 99999999998844444433321             6788999999999998732    356


Q ss_pred             cC---CCcCCCcEEEEeeec
Q 017184          300 RG---SWIKPGAVIIDVGIN  316 (375)
Q Consensus       300 ~~---~~vk~gavVIDvgin  316 (375)
                      .+   ++.|+|+++|+++--
T Consensus       236 Nk~~~~~mk~g~vlVN~aRG  255 (336)
T KOG0069|consen  236 NKKFIEKMKDGAVLVNTARG  255 (336)
T ss_pred             hHHHHHhcCCCeEEEecccc
Confidence            55   467999999999844

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.22  E-value=0.00056  Score=69.35  Aligned_cols=75  Identities=17%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             CCCEEEEEc-CCcccHHHHHHHHhhCCCeEEEEcCCC-CCHHhhccCCcEEEEccCCCC---cccC-CCcCCCcEEEEee
Q 017184          241 KGKRAVVIG-RSNIVGMPAALLLQREDATVSIVHSRT-KNPEEITRQADIIISAVGQPN---MVRG-SWIKPGAVIIDVG  314 (375)
Q Consensus       241 ~GK~vvVIG-rs~~VGkpla~lL~~~gAtVtv~hs~t-~~L~~~l~~ADIVIsAvG~p~---~I~~-~~vk~gavVIDvg  314 (375)
                      ..++|+||| .|. +|..++..|.+.|.+|+++++.. .+..+.+++||+||.+++...   ++.. ..+++|++|+|+|
T Consensus        97 ~~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~  175 (374)
T PRK11199         97 DLRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLT  175 (374)
T ss_pred             ccceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECC
Confidence            348899999 666 59999999999999999998754 356778899999999998543   2211 1178999999998


Q ss_pred             ec
Q 017184          315 IN  316 (375)
Q Consensus       315 in  316 (375)
                      ..
T Consensus       176 Sv  177 (374)
T PRK11199        176 SV  177 (374)
T ss_pred             Cc
Confidence            63

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.13  E-value=0.00077  Score=59.94  Aligned_cols=69  Identities=33%  Similarity=0.457  Sum_probs=52.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------CCCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ||+|||+|.. |.++|..|..+|.+|++..+.                            |.|+++.+++||+||.+++.
T Consensus         1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence            6899999996 999999999999999999654                            35788999999999999986


Q ss_pred             CCc---cc--CCCcCCCcEEEEe
Q 017184          296 PNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       296 p~~---I~--~~~vk~gavVIDv  313 (375)
                      -.+   ++  ..+++++..+|-+
T Consensus        80 ~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   80 QAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             GGHHHHHHHHTTTSHTT-EEEET
T ss_pred             HHHHHHHHHHhhccCCCCEEEEe
Confidence            432   21  2456778777754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.08  E-value=0.00081  Score=63.53  Aligned_cols=73  Identities=30%  Similarity=0.429  Sum_probs=58.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------CHHhhccCCcEEEEccCCCCc---cc--
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------NPEEITRQADIIISAVGQPNM---VR--  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------~L~~~l~~ADIVIsAvG~p~~---I~--  300 (375)
                      +++.|+|+|++ |..++..|...|.+|++-+|+.+                 ..++..+.|||||.|++....   +.  
T Consensus         2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            57899999996 99999999999999999977743                 345788999999999996553   21  


Q ss_pred             CCCcCCCcEEEEeeecCC
Q 017184          301 GSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~~~vk~gavVIDvgin~~  318 (375)
                      .+++. |.+|||+. ||.
T Consensus        81 ~~~~~-~KIvID~t-np~   96 (211)
T COG2085          81 RDALG-GKIVIDAT-NPI   96 (211)
T ss_pred             HHHhC-CeEEEecC-CCc
Confidence            24455 89999986 553

>PLN02712 arogenate dehydrogenase

Probab=97.04  E-value=0.0012  Score=72.01  Aligned_cols=80  Identities=14%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhcc-CCcEEEEccCCCC---c
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITR-QADIIISAVGQPN---M  298 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~-~ADIVIsAvG~p~---~  298 (375)
                      .+.++++++|.|||.|.+ |..++..|.+.|.+|+++++...             ++.+.+. .+|+||.+++...   +
T Consensus       363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            455778999999999886 99999999999999998887632             3444454 5899999998432   2


Q ss_pred             cc---CCCcCCCcEEEEeeec
Q 017184          299 VR---GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 I~---~~~vk~gavVIDvgin  316 (375)
                      +.   ...+++|++|+|++..
T Consensus       442 i~~l~~~~lk~g~ivvDv~Sv  462 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSV  462 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCc
Confidence            22   2357899999999743

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.03  E-value=0.0015  Score=65.15  Aligned_cols=75  Identities=20%  Similarity=0.380  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh--CCCeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCCC-
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR--EDATVSIVHSRT--------------------KNPEEITRQADIIISAVGQPN-  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~--~gAtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p~-  297 (375)
                      .-+++.|||.|.. |+..+..|..  ...+|.+++++.                    .+.++.+++|||||++++... 
T Consensus       127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P  205 (325)
T TIGR02371       127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP  205 (325)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4588999999886 8875544433  335788887652                    356788999999999998765 


Q ss_pred             cccCCCcCCCcEEEEeeec
Q 017184          298 MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~~vk~gavVIDvgin  316 (375)
                      ++..+|+|||+.|.-+|.+
T Consensus       206 ~~~~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       206 VVKADWVSEGTHINAIGAD  224 (325)
T ss_pred             EecHHHcCCCCEEEecCCC
Confidence            4789999999999999954

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.97  E-value=0.0014  Score=63.56  Aligned_cols=71  Identities=21%  Similarity=0.383  Sum_probs=56.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cc-cC---
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MV-RG---  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I-~~---  301 (375)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++...    .+ ..   
T Consensus         1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            4789999886 9999999999999999998762              356678899999999998542    11 11   


Q ss_pred             -CCcCCCcEEEEeee
Q 017184          302 -SWIKPGAVIIDVGI  315 (375)
Q Consensus       302 -~~vk~gavVIDvgi  315 (375)
                       ..+++|.++||.+.
T Consensus        80 ~~~~~~g~iivd~st   94 (291)
T TIGR01505        80 IEGAKPGKTLVDMSS   94 (291)
T ss_pred             hhcCCCCCEEEECCC
Confidence             24578999999764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.96  E-value=0.0018  Score=62.78  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=57.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cc-c---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MV-R---  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I-~---  300 (375)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+ .   
T Consensus         3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~   81 (296)
T PRK11559          3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG   81 (296)
T ss_pred             ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence            57999999886 9999999999999999988752              356677899999999998433    12 1   


Q ss_pred             -CCCcCCCcEEEEeeecC
Q 017184          301 -GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       301 -~~~vk~gavVIDvgin~  317 (375)
                       ...+++|.++||++...
T Consensus        82 ~~~~~~~g~iiid~st~~   99 (296)
T PRK11559         82 IIEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             HhhcCCCCcEEEECCCCC
Confidence             12468899999997543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.96  E-value=0.00049  Score=55.40  Aligned_cols=70  Identities=27%  Similarity=0.396  Sum_probs=52.3

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC---CeEEEE-cCCC---------------C-CHHhhccCCcEEEEccCCCCc--ccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED---ATVSIV-HSRT---------------K-NPEEITRQADIIISAVGQPNM--VRG  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g---AtVtv~-hs~t---------------~-~L~~~l~~ADIVIsAvG~p~~--I~~  301 (375)
                      |+.+||.|++ |..++..|.+.|   .+|+++ +++.               . +..+.+++||+||.++.-..+  +-.
T Consensus         1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            5889999996 999999999999   899965 6652               2 567788899999999986543  211


Q ss_pred             --CCcCCCcEEEEee
Q 017184          302 --SWIKPGAVIIDVG  314 (375)
Q Consensus       302 --~~vk~gavVIDvg  314 (375)
                        ....++.++||+.
T Consensus        80 ~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHTTSEEEEES
T ss_pred             HHhhccCCCEEEEeC
Confidence              3466788999874

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.96  E-value=0.0014  Score=65.79  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCC---cccC-
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPN---MVRG-  301 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~---~I~~-  301 (375)
                      .|+||+|.|||.|.+ |+++|..|...|.+|++.++..             .++.+.+++||+|+..++.+.   ++.. 
T Consensus        13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            468999999999986 9999999999999999986542             157889999999999988533   3432 


Q ss_pred             --CCcCCCcEE-EEeeec
Q 017184          302 --SWIKPGAVI-IDVGIN  316 (375)
Q Consensus       302 --~~vk~gavV-IDvgin  316 (375)
                        ..+++|+++ +-=|+|
T Consensus        92 il~~MK~GaiL~f~hgfn  109 (335)
T PRK13403         92 VEENLREGQMLLFSHGFN  109 (335)
T ss_pred             HHhcCCCCCEEEECCCcc
Confidence              456888754 333444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.94  E-value=0.0016  Score=60.93  Aligned_cols=59  Identities=19%  Similarity=0.395  Sum_probs=48.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-CH-----------------HhhccCCcEEEEccCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-NP-----------------EEITRQADIIISAVGQPN  297 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-~L-----------------~~~l~~ADIVIsAvG~p~  297 (375)
                      ++++||+|+|||.|.+ |..-+..|++.||.|||+..... ++                 .+.+..+|+||.|+|.+.
T Consensus         5 l~l~gk~vlVvGgG~v-a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDV-ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE   81 (205)
T ss_pred             EEcCCCeEEEECcCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence            5789999999999985 99999999999999999965421 11                 234778999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.003  Score=65.39  Aligned_cols=129  Identities=24%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             HHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----CHHhhccCCcEEEEccCC-CCcccCCCcCCC
Q 017184          233 LHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----NPEEITRQADIIISAVGQ-PNMVRGSWIKPG  307 (375)
Q Consensus       233 L~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----~L~~~l~~ADIVIsAvG~-p~~I~~~~vk~g  307 (375)
                      |.+.+.+++||+|+|||.|.+ |..+|..|.++|++|+++++...    .+.+.+++..|-+-. |. +.    .....+
T Consensus         7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~-~~~~~----~~~~~D   80 (480)
T PRK01438          7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL-GPGPT----LPEDTD   80 (480)
T ss_pred             hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE-CCCcc----ccCCCC
Confidence            456677889999999999996 99999999999999999986542    122334333332211 11 10    112234


Q ss_pred             cEEEEeeecCCCCC---CCCCCceeecccchh-hhhh---hcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          308 AVIIDVGINPVEDA---KSPRGYRLVGDVCYE-EACE---VASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       308 avVIDvgin~~~~~---~~~~g~kl~GDVd~~-~v~~---~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      .+|+-.|+.+...-   -...|-.+.++.++- ...+   +.-.| -|-|=.|.-|+.-|+.++++..
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I-~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWL-AVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEE-EEeCCCcHHHHHHHHHHHHHHc
Confidence            45555555543110   011233566766641 1111   11112 2558889999999999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0018  Score=66.34  Aligned_cols=111  Identities=22%  Similarity=0.262  Sum_probs=77.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ++|+|||+|++ |+++|+.|++++ .+|++..|+-                        +.+.+.+++.|+||++.+...
T Consensus         2 ~~ilviGaG~V-g~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGGV-GSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCchh-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            68999999885 999999999998 7999988761                        245688999999999998754


Q ss_pred             c--ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCC-CccHHHHHHHHHHHHHH
Q 017184          298 M--VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPG-GVGPMTIAMLLSNTLTS  367 (375)
Q Consensus       298 ~--I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPG-GVGp~T~amLl~N~v~a  367 (375)
                      -  +-+..++-|.-++|+.+....         .   -++++.+++|+ +|-++| |+-|=-+..+...+++-
T Consensus        81 ~~~i~ka~i~~gv~yvDts~~~~~---------~---~~~~~~a~~Ag-it~v~~~G~dPGi~nv~a~~a~~~  140 (389)
T COG1748          81 DLTILKACIKTGVDYVDTSYYEEP---------P---WKLDEEAKKAG-ITAVLGCGFDPGITNVLAAYAAKE  140 (389)
T ss_pred             hHHHHHHHHHhCCCEEEcccCCch---------h---hhhhHHHHHcC-eEEEcccCcCcchHHHHHHHHHHH
Confidence            3  334567888899999876532         1   12334466677 233432 55555555565555543

>PLN02256 arogenate dehydrogenase

Probab=96.90  E-value=0.0023  Score=63.33  Aligned_cols=76  Identities=16%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhc-cCCcEEEEccCCCC---ccc-
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEIT-RQADIIISAVGQPN---MVR-  300 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l-~~ADIVIsAvG~p~---~I~-  300 (375)
                      +-+++++.|||.|.+ |..++..|.+.|.+|+++++..             .++.+.+ .++|+||.+++...   ++. 
T Consensus        33 ~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~  111 (304)
T PLN02256         33 KSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRS  111 (304)
T ss_pred             cCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHh
Confidence            447889999999886 9999999999898898887653             2344444 46999999998432   232 


Q ss_pred             --CCCcCCCcEEEEeee
Q 017184          301 --GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 --~~~vk~gavVIDvgi  315 (375)
                        ...++++++|+|++.
T Consensus       112 l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             hhhhccCCCCEEEecCC
Confidence              234688999999996

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.89  E-value=0.0017  Score=63.54  Aligned_cols=74  Identities=18%  Similarity=0.330  Sum_probs=58.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cccC---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVRG---  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~~---  301 (375)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+..+++|+||.+++...    .+..   
T Consensus         2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence            47999999986 9999999999999999998752              355677899999999998653    1221   


Q ss_pred             --CCcCCCcEEEEeeecC
Q 017184          302 --SWIKPGAVIIDVGINP  317 (375)
Q Consensus       302 --~~vk~gavVIDvgin~  317 (375)
                        ..+++|.++||.+...
T Consensus        81 i~~~l~~g~lvid~sT~~   98 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIH   98 (296)
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence              1357899999998654

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.82  E-value=0.18  Score=50.41  Aligned_cols=147  Identities=12%  Similarity=0.056  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCCC----HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDTS----EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~vs----~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      |..---+=..++.++|-.+.++  ....+    .|-+.+.++-|+.- .+++|.+-.|  .|-..+.+.+.+      ..
T Consensus        56 STRTR~SFe~A~~~LGg~~~~~--~~~~s~~~kgEsl~Dtarvls~y-~~D~iv~R~~--~~~~~~~~a~~~------~~  124 (310)
T PRK13814         56 STRTRNSFEIAAKRLGAMVLNP--NLKISAISKGETLFDTIKTLEAM-GVYFFIVRHS--ENETPEQIAKQL------SS  124 (310)
T ss_pred             cchhHHHHHHHHHHhCCeEEEC--CCccccCCCCCCHHHHHHHHHHh-CCCEEEEeCC--chhHHHHHHHhC------CC
Confidence            3333335567888999987664  32211    24566666666552 3468887755  322222232222      12


Q ss_pred             cccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhCCC-eEEEEcCC-----
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQREDA-TVSIVHSR-----  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~gA-tVtv~hs~-----  275 (375)
                      +-.+|.|      ..+.+.||=+.+=+--++++..+++|++++++|-+  +-|.+.++.++...|. +|++|+-.     
T Consensus       125 vPvINag------~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~  198 (310)
T PRK13814        125 GVVINAG------DGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPD  198 (310)
T ss_pred             CCeEECC------cCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcC
Confidence            3455643      23457799888754444444447999999999985  4569999999999998 89998632     


Q ss_pred             ---------CCCHHhhccCCcEEEE
Q 017184          276 ---------TKNPEEITRQADIIIS  291 (375)
Q Consensus       276 ---------t~~L~~~l~~ADIVIs  291 (375)
                               +.|+++.++.||+|.+
T Consensus       199 ~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        199 KVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             ccccceEEEEcCHHHHhCCCCEEEE
Confidence                     2577899999999986

>PLN02342 ornithine carbamoyltransferase

Probab=96.75  E-value=0.12  Score=52.38  Aligned_cols=188  Identities=13%  Similarity=0.113  Sum_probs=118.0

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhcc--C------CCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC--
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAI--G------VVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED--  154 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~--g------~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--  154 (375)
                      .+|+-..+.++=.+.|-+...++|+..  +      .+-+....++-+  .|..---.=..++.++|.++.++.-...  
T Consensus        47 ~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF~e--pSTRTR~SFE~A~~~LGg~~i~l~~~~ss~  124 (348)
T PLN02342         47 HFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIFTK--PSMRTRVSFETGFFLLGGHALYLGPDDIQL  124 (348)
T ss_pred             CccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEecC--CCcchHHHHHHHHHHcCCcEEEeCcccccC
Confidence            466666666544445555555554321  1      112233333332  3433334567789999999987642210  


Q ss_pred             CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHH-HHHH
Q 017184          155 TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELL  233 (375)
Q Consensus       155 vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL  233 (375)
                      ...|.+.+.++-|..-  +|+|.+-.|-.      ..++.+...-   .+-.+|.|       .+.+.||=+.+= +.+.
T Consensus       125 ~kGESl~DTarvLs~y--~D~IviR~~~~------~~~~~la~~~---~vPVINA~-------~~~~HPtQaLaDl~Ti~  186 (348)
T PLN02342        125 GKREETRDIARVLSRY--NDIIMARVFAH------QDVLDLAEYS---SVPVINGL-------TDYNHPCQIMADALTII  186 (348)
T ss_pred             CCCcCHHHHHHHHHHh--CCEEEEeCCCh------HHHHHHHHhC---CCCEEECC-------CCCCChHHHHHHHHHHH
Confidence            1235677777777664  78999886632      2223332211   23445642       234679987774 4444


Q ss_pred             HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------CCCHHhhccCCcEEEE
Q 017184          234 HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------TKNPEEITRQADIIIS  291 (375)
Q Consensus       234 ~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------t~~L~~~l~~ADIVIs  291 (375)
                      ++.| +++|++|++||-.+-|.+.++.++...|++|++|+-.                      +.|+++.++.||+|.+
T Consensus       187 e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~  265 (348)
T PLN02342        187 EHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYT  265 (348)
T ss_pred             HHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEE
Confidence            5555 7999999999998888999999999999999998522                      2567889999999997


Q ss_pred             cc
Q 017184          292 AV  293 (375)
Q Consensus       292 Av  293 (375)
                      -.
T Consensus       266 ~~  267 (348)
T PLN02342        266 DV  267 (348)
T ss_pred             CC
Confidence            63

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.75  E-value=0.003  Score=62.06  Aligned_cols=74  Identities=24%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------CCH-HhhccCCcEEEEccCCCC---cc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------KNP-EEITRQADIIISAVGQPN---MV  299 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------~~L-~~~l~~ADIVIsAvG~p~---~I  299 (375)
                      -++|+|+|.|.+ |+.++..|..+|..|.++.+..                  .+. .+....||+||.+++...   ++
T Consensus         3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence            468999999886 9999999999999888886542                  122 566788999999999643   22


Q ss_pred             cC--CCcCCCcEEEEeeec
Q 017184          300 RG--SWIKPGAVIIDVGIN  316 (375)
Q Consensus       300 ~~--~~vk~gavVIDvgin  316 (375)
                      ..  ..+++|++|.|+|..
T Consensus        82 ~~l~~~l~~g~iv~Dv~S~  100 (279)
T COG0287          82 KELAPHLKKGAIVTDVGSV  100 (279)
T ss_pred             HHhcccCCCCCEEEecccc
Confidence            21  278999999999964

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.72  E-value=0.0027  Score=62.10  Aligned_cols=73  Identities=26%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC----------------CCHHhhccCCcEEEEccCCCCc---cc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT----------------KNPEEITRQADIIISAVGQPNM---VR  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~~---I~  300 (375)
                      .++|.|||.|.+ |..++..|.+.|.  .|++++++.                .++.+.++++|+||.+++....   +.
T Consensus         6 ~~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~   84 (307)
T PRK07502          6 FDRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA   84 (307)
T ss_pred             CcEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence            368999999885 9999999998884  788887652                2456678899999999986431   21


Q ss_pred             --CCCcCCCcEEEEeee
Q 017184          301 --GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 --~~~vk~gavVIDvgi  315 (375)
                        ..+++++.+|+|+|.
T Consensus        85 ~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         85 EIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHhhCCCCCEEEeCcc
Confidence              246789999999985

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.59  E-value=0.0038  Score=61.43  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhC----CC-------eEEEEcCC------------------
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE----DA-------TVSIVHSR------------------  275 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~----gA-------tVtv~hs~------------------  275 (375)
                      +-.|++..++-.+.+++.-+++++|+|.. |..++.+|...    |.       .+++++++                  
T Consensus         8 ~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a   86 (279)
T cd05312           8 ALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA   86 (279)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH
Confidence            45688999999999999999999999987 99999888775    76       68888765                  


Q ss_pred             --C-----CCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 --T-----KNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 --t-----~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                        +     .+|.+.++  ++|++|-..+.++.+++++|+      +.-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  143 (279)
T cd05312          87 RKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT  143 (279)
T ss_pred             hhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence              1     25788888  899999999888999998885      356777666 543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.59  E-value=0.0035  Score=63.06  Aligned_cols=73  Identities=25%  Similarity=0.392  Sum_probs=55.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------CCHHhhccCCcEEEEccCCCC---cc--
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------KNPEEITRQADIIISAVGQPN---MV--  299 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------~~L~~~l~~ADIVIsAvG~p~---~I--  299 (375)
                      ++|.|||.|.+ |..++..|.+.|..|.+..+..                  .++.+.+++||+||.+++...   ++  
T Consensus         1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            47999999986 9999999999998777775431                  234566789999999998543   22  


Q ss_pred             -cCCCcCCCcEEEEeeec
Q 017184          300 -RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       300 -~~~~vk~gavVIDvgin  316 (375)
                       .+..++++++|.|+|.-
T Consensus        80 l~~~~l~~~~ivtDv~Sv   97 (359)
T PRK06545         80 LADLELKPGVIVTDVGSV   97 (359)
T ss_pred             HhhcCCCCCcEEEeCccc
Confidence             22247889999999854

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.58  E-value=0.0062  Score=60.39  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCCC--
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT--------------------KNPEEITRQADIIISAVGQPN--  297 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p~--  297 (375)
                      -+++.|||.|.- ++.-+..|.. ++ -+|.+.+++.                    .+.++.+++|||||++|+...  
T Consensus       128 ~~~l~viGaG~Q-A~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQ-ARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA  206 (313)
T ss_dssp             --EEEEE--SHH-HHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred             CceEEEECCCHH-HHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence            357777777764 6655555443 33 3567666541                    367899999999999999766  


Q ss_pred             -cccCCCcCCCcEEEEeeec
Q 017184          298 -MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 -~I~~~~vk~gavVIDvgin  316 (375)
                       +++.+|+++|+.|+-+|.+
T Consensus       207 P~~~~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  207 PVFDAEWLKPGTHINAIGSY  226 (313)
T ss_dssp             ESB-GGGS-TT-EEEE-S-S
T ss_pred             ccccHHHcCCCcEEEEecCC
Confidence             5899999999999999975

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.57  E-value=0.21  Score=50.34  Aligned_cols=157  Identities=15%  Similarity=0.102  Sum_probs=103.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC---CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED---TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~---vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      +....++-+  .|..---+=..++.++|.++.+..- .+   ...|.+.+.++-|..-  +|+|.+--|-.      ..+
T Consensus        47 k~v~~lF~e--pSTRTR~SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dt~rvls~y--~D~iviR~~~~------~~~  115 (331)
T PRK02102         47 KNIALIFEK--TSTRTRCAFEVAAIDLGAHVTYLGP-NDSQLGKKESIEDTARVLGRM--YDGIEYRGFKQ------EIV  115 (331)
T ss_pred             CEEEEEeCC--CChhHHHHHHHHHHHcCCCEEEcCc-ccccCCCCcCHHHHHHHHhhc--CCEEEEECCch------HHH
Confidence            444444443  3444444557789999999875532 11   1235677788877764  88999986532      233


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEE
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSI  271 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv  271 (375)
                      +.+...-+   +-.+|.|       .+...||=+.+=+--++++...++|+++++||-+ ..|.+.++.++...|++|++
T Consensus       116 ~~~a~~~~---vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~  185 (331)
T PRK02102        116 EELAKYSG---VPVWNGL-------TDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRI  185 (331)
T ss_pred             HHHHHhCC---CCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEE
Confidence            33322222   2345542       2346699888754444444457999999999996 34799999999999999999


Q ss_pred             EcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          272 VHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       272 ~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      ++-.                         +.|+++.++.||+|.+-+
T Consensus       186 ~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        186 CAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             ECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            8632                         246678899999999753

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.56  E-value=0.002  Score=62.33  Aligned_cols=72  Identities=24%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------HHhhccCCcEEEEccCCCCc---cc--CCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------PEEITRQADIIISAVGQPNM---VR--GSW  303 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------L~~~l~~ADIVIsAvG~p~~---I~--~~~  303 (375)
                      +|.|||.|.+ |..++..|.+.|.+|++++++...               ..+.+++||+||.+++....   +.  ...
T Consensus         2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            6899999885 999999999999999999875311               12457899999999984332   21  134


Q ss_pred             cCCCcEEEEeeec
Q 017184          304 IKPGAVIIDVGIN  316 (375)
Q Consensus       304 vk~gavVIDvgin  316 (375)
                      ++++.+|.|++.-
T Consensus        81 l~~~~ii~d~~Sv   93 (279)
T PRK07417         81 LPPEAIVTDVGSV   93 (279)
T ss_pred             CCCCcEEEeCcch
Confidence            6889999999843

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.56  E-value=0.0059  Score=60.38  Aligned_cols=76  Identities=14%  Similarity=0.099  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .-+++.|||.|.- |+.-+..+.. ++ -+|.+.+++.                     .+.++.+++||||+++|+...
T Consensus       116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            4688999999886 8866666554 23 3688776551                     356788999999999999766


Q ss_pred             c-ccCCCcCCCcEEEEeeecC
Q 017184          298 M-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       298 ~-I~~~~vk~gavVIDvgin~  317 (375)
                      . ++.+|++||+.|.=+|.+.
T Consensus       195 P~~~~~~l~pg~hV~aiGs~~  215 (301)
T PRK06407        195 PIFNRKYLGDEYHVNLAGSNY  215 (301)
T ss_pred             cEecHHHcCCCceEEecCCCC
Confidence            4 7999999999999999653

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.55  E-value=0.34  Score=48.33  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCC-CCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPE-DTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH  205 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~-~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~  205 (375)
                      .|..---+=..++.++|-++.++.-.+ +...+.+.+.++-|+.  -+|+|.+-.|-  +-....    +....   .+-
T Consensus        53 pSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~--~~D~iv~R~~~--~~~~~~----~a~~~---~vP  121 (311)
T PRK14804         53 TSTRTRVSFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSR--NVSVIMARLKK--HEDLLV----MKNGS---QVP  121 (311)
T ss_pred             CchhHHHHHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHh--cCCEEEEeCCC--hHHHHH----HHHHC---CCC
Confidence            344444466788999999998775432 1222344445666665  58999988663  222222    21111   233


Q ss_pred             cchhhhcccCCCccccccCCHHHH-HHHHHHhCC-CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          206 PLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGF-DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       206 ~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i-~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      .+|.|       ...+.||=+.+= +.+.|+.|. +++|++|++||.++-|.+.++.++...|++|++++-.        
T Consensus       122 VINag-------~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  194 (311)
T PRK14804        122 VINGC-------DNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHA  194 (311)
T ss_pred             EEECC-------CCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHH
Confidence            44643       224679988774 455555554 7999999999997778999999999999999998642        


Q ss_pred             --------------CCCHHhhccCCcEEEEc
Q 017184          276 --------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 --------------t~~L~~~l~~ADIVIsA  292 (375)
                                    +.|+++.++.||+|.+-
T Consensus       195 ~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        195 QTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             HHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence                          24667888999999873

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.54  E-value=0.19  Score=50.68  Aligned_cols=154  Identities=12%  Similarity=0.003  Sum_probs=101.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCC----HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          117 LAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTS----EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       117 LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs----~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      ....++=+  .|..=--+=..++.++|.++.+.  +...+    -|.+.+.++-|+.-  +|+|.+-.|-  +    ..+
T Consensus        47 ~l~~lF~e--pSTRTR~SFe~A~~~LGg~~i~l--~~~~ss~~kgEsl~DTarvls~y--~D~iviR~~~--~----~~~  114 (332)
T PRK04284         47 NIALIFEK--DSTRTRCAFEVAAYDQGAHVTYL--GPTGSQMGKKESTKDTARVLGGM--YDGIEYRGFS--Q----RTV  114 (332)
T ss_pred             EEEEEecC--CChhHHHHHHHHHHHcCCeEEEc--CCccccCCCCcCHHHHHHHHHHh--CCEEEEecCc--h----HHH
Confidence            33434443  34333345677889999998754  32222    36677888877774  8899987652  2    223


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHh-CCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEE
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRY-GFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVS  270 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~-~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVt  270 (375)
                      +.+...-.   +-.+|.|       .+...||=+.+=+--+.++ ..+++|++|++||-+ +-|.+.++.+|...|++|+
T Consensus       115 ~~~a~~s~---vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~  184 (332)
T PRK04284        115 ETLAEYSG---VPVWNGL-------TDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFH  184 (332)
T ss_pred             HHHHHhCC---CCEEECC-------CCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEE
Confidence            33322112   3345632       2346799888754444444 357999999999975 3479999999999999999


Q ss_pred             EEcCC-------------------------CCCHHhhccCCcEEEEc
Q 017184          271 IVHSR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       271 v~hs~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      +|+-.                         +.|+++.++.||+|.+-
T Consensus       185 ~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        185 LVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             EECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            98633                         24677889999999975

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.53  E-value=0.043  Score=55.35  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=98.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCCC----CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccC
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPEDT----SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD  202 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v----s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVD  202 (375)
                      .|..---+=..++.++|.++.++.  .+.    ..|.+.+.++-|+.-  +|+|.+-.|-  |-..+.+.+..    .  
T Consensus        55 pSTRTR~SFe~A~~~LGg~~i~l~--~~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~--~~~~~~~a~~~----~--  122 (336)
T PRK03515         55 DSTRTRCSFEVAAYDQGARVTYLG--PSGSQIGHKESIKDTARVLGRM--YDGIQYRGYG--QEIVETLAEYA----G--  122 (336)
T ss_pred             CChhHHHHHHHHHHHcCCcEEEeC--CccccCCCCCCHHHHHHHHHHh--CcEEEEEeCC--hHHHHHHHHhC----C--
Confidence            344444455678899999988753  222    236678888888764  7899998653  22222222221    1  


Q ss_pred             ccccchhhhcccCCCccccccCCHHH-HHHHHHHhCC-CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC----
Q 017184          203 GFHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGF-DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR----  275 (375)
Q Consensus       203 Gl~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i-~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~----  275 (375)
                       +-.+|.+       .+...||=+.+ ++.+.++.|. +++|+++++||-. .-|.+.+..++...|++|++|+-.    
T Consensus       123 -vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~  194 (336)
T PRK03515        123 -VPVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWP  194 (336)
T ss_pred             -CCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcC
Confidence             3334531       23567998887 4555555553 7999999999975 347999999999999999998632    


Q ss_pred             ---------------------CCCHHhhccCCcEEEEc
Q 017184          276 ---------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 ---------------------t~~L~~~l~~ADIVIsA  292 (375)
                                           +.|+++.++.||+|.+-
T Consensus       195 ~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        195 EAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             cHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                                 24677889999999975

>PRK06046 alanine dehydrogenase; Validated

Probab=96.52  E-value=0.0063  Score=60.60  Aligned_cols=74  Identities=26%  Similarity=0.418  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-CCC-eEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-EDA-TVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~gA-tVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .-+++.|||.|.. |+..+..|.. .+. .|.+++++.                     .++++.++ +|+||++++...
T Consensus       128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            4579999999996 8888877764 344 678887652                     24556665 999999999655


Q ss_pred             -cccCCCcCCCcEEEEeeec
Q 017184          298 -MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 -~I~~~~vk~gavVIDvgin  316 (375)
                       +++.+|+|+|+.|.-+|.+
T Consensus       206 P~~~~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        206 PVVKAEWIKEGTHINAIGAD  225 (326)
T ss_pred             cEecHHHcCCCCEEEecCCC
Confidence             4789999999999999964

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.52  E-value=0.005  Score=58.10  Aligned_cols=115  Identities=21%  Similarity=0.359  Sum_probs=71.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-C-----------------CHHhhccCCcEEEEccCCCCc-
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-K-----------------NPEEITRQADIIISAVGQPNM-  298 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~-----------------~L~~~l~~ADIVIsAvG~p~~-  298 (375)
                      ++++||+|+|||.|.+ |.-=+.+|++.||+|++..-.. +                 -..+.+..+++||.||+.+.+ 
T Consensus         8 ~~l~~k~VlvvGgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln   86 (210)
T COG1648           8 LDLEGKKVLVVGGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN   86 (210)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHH
Confidence            5789999999999985 9989999999999999985432 1                 122455669999999997653 


Q ss_pred             --ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhh---cceeccCCCCccHHHHHHHHHHHHHH
Q 017184          299 --VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV---ASAITPVPGGVGPMTIAMLLSNTLTS  367 (375)
Q Consensus       299 --I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~---a~~iTPVPGGVGp~T~amLl~N~v~a  367 (375)
                        |-... ++-.+.+++.-.+.           .+|+-|....++   .-+|+  -||-+|+.+.++.+.....
T Consensus        87 ~~i~~~a-~~~~i~vNv~D~p~-----------~~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~~  146 (210)
T COG1648          87 ERIAKAA-RERRILVNVVDDPE-----------LCDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEAL  146 (210)
T ss_pred             HHHHHHH-HHhCCceeccCCcc-----------cCceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHHH
Confidence              21111 11123344432221           134433333222   22333  3888898888888766544

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.51  E-value=0.23  Score=50.11  Aligned_cols=148  Identities=14%  Similarity=0.057  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCC---CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPED---TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~---vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|..---+=..++.++|.++.++.- .+   ...|.+.+.++-|+.-  +|+|.+-.|-.      ..+..+...-+   
T Consensus        55 pSTRTR~SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~iviR~~~~------~~~~~~a~~~~---  122 (334)
T PRK12562         55 DSTRTRCSFEVAAYDQGARVTYLGP-SGSQIGHKESIKDTARVLGRM--YDGIQYRGHGQ------EVVETLAEYAG---  122 (334)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCC-ccccCCCCcCHHHHHHHHHHh--CCEEEEECCch------HHHHHHHHhCC---
Confidence            3444444567789999999987742 21   1235677788877764  88999986632      23333322222   


Q ss_pred             cccchhhhcccCCCccccccCCHHHH-HHHHHHhCC-CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-----
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGF-DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-----  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i-~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-----  275 (375)
                      +-.+|.|       .+...||=+.+= +.+.++.|. .++|+++++||-. ..|.+.++.++...|++|++|+-.     
T Consensus       123 vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~  195 (334)
T PRK12562        123 VPVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPE  195 (334)
T ss_pred             CCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCc
Confidence            3445642       234669877774 455556554 5899999999975 347999999999999999998632     


Q ss_pred             --------------------CCCHHhhccCCcEEEEcc
Q 017184          276 --------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 --------------------t~~L~~~l~~ADIVIsAv  293 (375)
                                          +.|+++.++.||+|.+-.
T Consensus       196 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  233 (334)
T PRK12562        196 ASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV  233 (334)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence                                256778899999999754

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.51  E-value=0.0042  Score=56.66  Aligned_cols=76  Identities=28%  Similarity=0.434  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCC---CCcccC-
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQ---PNMVRG-  301 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~---p~~I~~-  301 (375)
                      |+||+|.|||.|.- |+.-|+.|...|.+|++..+..              .+..|.+++||+|+..++-   +.+... 
T Consensus         2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~   80 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEE   80 (165)
T ss_dssp             HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred             cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence            58999999999987 9999999999999999998764              3567899999999999873   222211 


Q ss_pred             --CCcCCCcEE-EEeeec
Q 017184          302 --SWIKPGAVI-IDVGIN  316 (375)
Q Consensus       302 --~~vk~gavV-IDvgin  316 (375)
                        ..+++|+++ +==|+|
T Consensus        81 I~p~l~~G~~L~fahGfn   98 (165)
T PF07991_consen   81 IAPNLKPGATLVFAHGFN   98 (165)
T ss_dssp             HHHHS-TT-EEEESSSHH
T ss_pred             HHhhCCCCCEEEeCCcch
Confidence              247888643 333444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.50  E-value=0.0062  Score=60.65  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhC-C-CeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCCC-
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRE-D-ATVSIVHSRT--------------------KNPEEITRQADIIISAVGQPN-  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~-g-AtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p~-  297 (375)
                      .-+++.|||.|.- ++.-+..+..- . -+|.+.+++.                    .+.++.+++||||+++|+... 
T Consensus       127 d~~~l~iiG~G~q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P  205 (315)
T PRK06823        127 HVSAIGIVGTGIQ-ARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP  205 (315)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc
Confidence            3466677777664 65555444432 2 3566665441                    356788999999999999766 


Q ss_pred             cccCCCcCCCcEEEEeeec
Q 017184          298 MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~~vk~gavVIDvgin  316 (375)
                      +++.+|++||+.|+=+|.+
T Consensus       206 ~~~~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        206 LLQAEDIQPGTHITAVGAD  224 (315)
T ss_pred             eeCHHHcCCCcEEEecCCC
Confidence            4799999999999999954

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.50  E-value=0.0045  Score=60.12  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=54.7

Q ss_pred             EEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------CCCHHhhccCCcEEEEccCCCCc----cc--C---CC
Q 017184          247 VIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITRQADIIISAVGQPNM----VR--G---SW  303 (375)
Q Consensus       247 VIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------t~~L~~~l~~ADIVIsAvG~p~~----I~--~---~~  303 (375)
                      +||.|.+ |.+++..|++.|.+|++++++              +.+..+.++++|+||.+++.+..    +.  .   ..
T Consensus         1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            5799885 999999999999999999876              23667788999999999997542    21  1   24


Q ss_pred             cCCCcEEEEeeec
Q 017184          304 IKPGAVIIDVGIN  316 (375)
Q Consensus       304 vk~gavVIDvgin  316 (375)
                      +++|.++||.+..
T Consensus        80 ~~~g~~vid~st~   92 (288)
T TIGR01692        80 VAKGSLLIDCSTI   92 (288)
T ss_pred             CCCCCEEEECCCC
Confidence            5789999999854

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.49  E-value=0.22  Score=49.48  Aligned_cols=147  Identities=15%  Similarity=0.182  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.-+.+.   ..|.+.+..+-|+.-  +|+|.+-.|  .|-....+.+..       .+
T Consensus        50 STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~--~~~~~~~~a~~s-------~v  118 (301)
T TIGR00670        50 STRTRLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHP--LEGAARLAAEVS-------EV  118 (301)
T ss_pred             CchhHhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECC--chhHHHHHHhhC-------CC
Confidence            4444446678899999998776541221   235566777766664  789998865  332333332222       23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      -.+|.|-      ...+.||=+.+= +.+.++.| +++|++|+++|-+  +-|.+.++.++...|++|++++-.      
T Consensus       119 PVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~  191 (301)
T TIGR00670       119 PVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPK  191 (301)
T ss_pred             CEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCH
Confidence            4456421      134679988874 44445555 7999999999996  457999999999999999998633      


Q ss_pred             ---------------CCCHHhhccCCcEEEEc
Q 017184          276 ---------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 ---------------t~~L~~~l~~ADIVIsA  292 (375)
                                     +.|+++.++.||+|.+-
T Consensus       192 ~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       192 EILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             HHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence                           24667889999998874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.48  E-value=0.02  Score=59.82  Aligned_cols=52  Identities=31%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             ccccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          220 LFIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       220 ~~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      +-.+.|..|+.    +.+++.|.+++||+|+|.|.|+ ||..++.+|...||.|+.+
T Consensus       202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaV  257 (444)
T PRK14031        202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTM  257 (444)
T ss_pred             CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            34578999875    4555678999999999999998 5999999999999998863

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.47  E-value=0.017  Score=59.46  Aligned_cols=94  Identities=26%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHhC--CCCCCCEEEEEcC----------------CcccHHHHHHHHhhCCCeEEEEcCCCC--------
Q 017184          224 CTPKGCIELLHRYG--FDIKGKRAVVIGR----------------SNIVGMPAALLLQREDATVSIVHSRTK--------  277 (375)
Q Consensus       224 cT~~gvi~lL~~~~--i~l~GK~vvVIGr----------------s~~VGkpla~lL~~~gAtVtv~hs~t~--------  277 (375)
                      ..|.-+++.+++.-  -+++||+|+|-|+                |+.+|+.+|..|..+||+|+++++...        
T Consensus       168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~  247 (399)
T PRK05579        168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK  247 (399)
T ss_pred             CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence            34566655555432  4689999999998                776799999999999999999876421        


Q ss_pred             --------CH----HhhccCCcEEEEccCCCCcc----cCCCcCCC--cEEEEeeecC
Q 017184          278 --------NP----EEITRQADIIISAVGQPNMV----RGSWIKPG--AVIIDVGINP  317 (375)
Q Consensus       278 --------~L----~~~l~~ADIVIsAvG~p~~I----~~~~vk~g--avVIDvgin~  317 (375)
                              ++    .+...+.|++|.++|...+-    ...-+|++  ...+.+--||
T Consensus       248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~p  305 (399)
T PRK05579        248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNP  305 (399)
T ss_pred             EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCc
Confidence                    11    23346789999999865442    22335543  3566766555

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.47  E-value=0.0048  Score=62.91  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCC---CCCHHhhccCCcEEEEccCCCC---cccC-----CCcCCCc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSR---TKNPEEITRQADIIISAVGQPN---MVRG-----SWIKPGA  308 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~---t~~L~~~l~~ADIVIsAvG~p~---~I~~-----~~vk~ga  308 (375)
                      .-.+|+|||-+|.+|..++..|.+. +.+|+.+.+.   ..++.+.+++||+||.|++...   ++..     .++++|+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~   82 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ   82 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence            4578999999444699999999865 7788888653   3457788999999999999543   2321     2379999


Q ss_pred             EEEEeeec
Q 017184          309 VIIDVGIN  316 (375)
Q Consensus       309 vVIDvgin  316 (375)
                      +|.|+|..
T Consensus        83 iVtDVgSv   90 (370)
T PRK08818         83 LWLDVTSI   90 (370)
T ss_pred             EEEECCCC
Confidence            99999964

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.46  E-value=0.004  Score=60.49  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-----------eEEEEcCC------------------
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-----------TVSIVHSR------------------  275 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-----------tVtv~hs~------------------  275 (375)
                      |-.|++..++-.+.+++.-+++++|+|-. |..++.+|...+.           .+++++++                  
T Consensus         8 ~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~   86 (254)
T cd00762           8 AVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA   86 (254)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH
Confidence            45678899999999999999999999987 9999998877543           58888765                  


Q ss_pred             --------CCCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 --------TKNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 --------t~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                              ..+|.+.++  ++|++|-..+.|+.+++|+++      +.-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  144 (254)
T cd00762          87 RFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT  144 (254)
T ss_pred             HHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence                    125778888  999999999999999999885      355776665 443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.45  E-value=0.0059  Score=53.74  Aligned_cols=53  Identities=26%  Similarity=0.481  Sum_probs=43.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC------------------------CCHHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      ||+|||+++.||..++.+|...+.  ++.+++...                        .+..+.+++|||||.++|.|
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            799999966679999999998873  688887651                        24568899999999999976

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.45  E-value=0.02  Score=61.42  Aligned_cols=97  Identities=18%  Similarity=0.246  Sum_probs=77.8

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh-----CCC-------eEEEEcCC------------
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR------------  275 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~-----~gA-------tVtv~hs~------------  275 (375)
                      +---++-.|++..++-.+.+++..+++++|+|.+ |..++.+|..     .|.       .+++++++            
T Consensus       299 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~  377 (581)
T PLN03129        299 GTAAVALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQ  377 (581)
T ss_pred             hHHHHHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccCh
Confidence            3345566788999999999999999999999997 9999988876     354       68888764            


Q ss_pred             ------------CCCHHhhccC--CcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 ------------TKNPEEITRQ--ADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 ------------t~~L~~~l~~--ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                                  ..+|.+.++.  +|++|-+.+.++.+++++|+      +.-+|+=+. ||.
T Consensus       378 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt  439 (581)
T PLN03129        378 PFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT  439 (581)
T ss_pred             HHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                        1367788888  99999999988999999886      566777666 443

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.44  E-value=0.054  Score=54.55  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC----CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT----SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v----s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      |..=--+=..++.++|.++.++  +.+.    ..|.+.+.++-|+.-  +|+|.+--|  .+    ..++.+...-+   
T Consensus        57 STRTR~SFe~A~~~LGg~~i~l--~~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~--~~----~~~~~~a~~~~---  123 (334)
T PRK01713         57 STRTRCAFEVAAYDQGAQVTYI--DPNSSQIGHKESMKDTARVLGRM--YDAIEYRGF--KQ----SIVNELAEYAG---  123 (334)
T ss_pred             CchHHHHHHHHHHHcCCeEEEc--CCccccCCCCcCHHHHHHHHHHh--CCEEEEEcC--ch----HHHHHHHHhCC---
Confidence            4333335567889999998765  3221    235677777777764  889998865  22    22333322112   


Q ss_pred             cccchhhhcccCCCccccccCCHHH-HHHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      +-.+|.+       .+...||=+.+ ++.+.++.|.+++|+++++||-+ ..|.+.++.++...|++|++|+-.      
T Consensus       124 vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~  196 (334)
T PRK01713        124 VPVFNGL-------TDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEA  196 (334)
T ss_pred             CCEEECC-------CCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCH
Confidence            3444541       23467997777 45566666657999999999986 447999999999999999998632      


Q ss_pred             -------------------CCCHHhhccCCcEEEEc
Q 017184          276 -------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsA  292 (375)
                                         +.|+.+.+++||+|.+-
T Consensus       197 ~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        197 SLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                               24677889999999974

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.44  E-value=0.0065  Score=59.49  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccC---CcEEEEccCCCCc----cc--
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQ---ADIIISAVGQPNM----VR--  300 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~---ADIVIsAvG~p~~----I~--  300 (375)
                      ++.+||.|.+ |.+++..|.+.|.+|++++++.              .+.++..++   +|+||++++.+..    +.  
T Consensus         2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            5899999986 9999999999999999998762              345566555   6999999997632    21  


Q ss_pred             CCCcCCCcEEEEeeec
Q 017184          301 GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 ~~~vk~gavVIDvgin  316 (375)
                      ...+++|.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (299)
T PRK12490         81 YPLLSPGDIVVDGGNS   96 (299)
T ss_pred             hccCCCCCEEEECCCC
Confidence            1346789999999654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.42  E-value=0.0048  Score=63.45  Aligned_cols=74  Identities=26%  Similarity=0.378  Sum_probs=55.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------CHHhh---------------ccCCcEEEEc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------NPEEI---------------TRQADIIISA  292 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~L~~~---------------l~~ADIVIsA  292 (375)
                      ++|.|||.|.+ |.|+|..|++.|.+|+.++++..               ++.+.               .++||+||.+
T Consensus         4 ~kI~VIGlG~~-G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYI-GLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchh-hHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999885 99999999999999999987532               22222               2379999999


Q ss_pred             cCCC---------Cccc------CCCcCCCcEEEEeeecC
Q 017184          293 VGQP---------NMVR------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       293 vG~p---------~~I~------~~~vk~gavVIDvgin~  317 (375)
                      ++.|         ..+.      ...+++|++||+....+
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~  122 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP  122 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            9986         1221      13568899998876643

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.40  E-value=0.3  Score=49.37  Aligned_cols=155  Identities=11%  Similarity=0.118  Sum_probs=102.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      +....++=+  .|..=--+=..++.++|-++.++.- .+.   ..|.+.+.++-|+.-  +|+|.+-.+  .|-.    +
T Consensus        43 k~v~~lF~e--pSTRTR~SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dtarvls~y--~D~iviR~~--~~~~----~  111 (338)
T PRK02255         43 KTLGMIFEQ--SSTRTRVSFETAMTQLGGHAQYLAP-GQIQLGGHESLEDTARVLSRL--VDIIMARVD--RHQT----V  111 (338)
T ss_pred             CEEEEEeCC--CCcchHHHHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CcEEEEecC--ChHH----H
Confidence            344444443  3433333567889999999887752 221   235677777777764  788888765  3222    2


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHH-HHHHHHHhC--CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeE
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYG--FDIKGKRAVVIGRSNIVGMPAALLLQREDATV  269 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~--i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtV  269 (375)
                      +.+...-   .+-.+|.+       .+...||=+.+ ++.+.++.|  -+++|++|++||-..-|.+.++.++...|++|
T Consensus       112 ~~~a~~~---~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v  181 (338)
T PRK02255        112 VELAKYA---TVPVINGM-------SDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDF  181 (338)
T ss_pred             HHHHHhC---CCCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEE
Confidence            2232211   23445631       23457997777 455556654  36999999999997778999999999999999


Q ss_pred             EEEcCC-------------------------CCCHHhhccCCcEEEE
Q 017184          270 SIVHSR-------------------------TKNPEEITRQADIIIS  291 (375)
Q Consensus       270 tv~hs~-------------------------t~~L~~~l~~ADIVIs  291 (375)
                      ++|+-.                         +.|+++.++.||+|.+
T Consensus       182 ~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~  228 (338)
T PRK02255        182 VHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT  228 (338)
T ss_pred             EEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence            998632                         2567889999999998

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.39  E-value=0.0052  Score=59.79  Aligned_cols=70  Identities=20%  Similarity=0.359  Sum_probs=52.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC----eEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCcc----
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA----TVSIVHSRT---------------KNPEEITRQADIIISAVGQPNMV----  299 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA----tVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~I----  299 (375)
                      +++.+||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.+++||+||.++. |..+    
T Consensus         3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl   80 (272)
T PRK12491          3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI   80 (272)
T ss_pred             CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence            47999999986 9999999998773    688887642               234456789999999998 4422    


Q ss_pred             cC--CCcCCCcEEEEee
Q 017184          300 RG--SWIKPGAVIIDVG  314 (375)
Q Consensus       300 ~~--~~vk~gavVIDvg  314 (375)
                      ..  +.++++.+|||+.
T Consensus        81 ~~l~~~~~~~~lvISi~   97 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIA   97 (272)
T ss_pred             HHHHHhhcCCcEEEEeC
Confidence            11  3467788999985

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.35  E-value=0.0062  Score=59.72  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCC----cc-cCC---
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPN----MV-RGS---  302 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~----~I-~~~---  302 (375)
                      +|.+||.|.+ |.+++..|++.|.+|++++++.             .+..+..+++|+||.++..+.    .+ ..+   
T Consensus         2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            5899999986 9999999999999999987642             245567789999999998653    12 211   


Q ss_pred             -CcCCCcEEEEeeec
Q 017184          303 -WIKPGAVIIDVGIN  316 (375)
Q Consensus       303 -~vk~gavVIDvgin  316 (375)
                       .+++|.++||++..
T Consensus        81 ~~~~~g~ivvd~sT~   95 (292)
T PRK15059         81 KASLKGKTIVDMSSI   95 (292)
T ss_pred             ccCCCCCEEEECCCC
Confidence             35789999998854

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.33  E-value=0.0071  Score=58.48  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCCc--
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRT----------------KNPEEITRQADIIISAVGQPNM--  298 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~~--  298 (375)
                      ++.++.+||.|.+ |.+++..|++.|    .+|++++|+.                .+..+.++++|+||.++....+  
T Consensus         2 ~~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHH
Confidence            3468999999886 999999999887    5788888742                1344567899999999985432  


Q ss_pred             -cc--CCCcCCCcEEEEe
Q 017184          299 -VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       299 -I~--~~~vk~gavVIDv  313 (375)
                       +.  .+.++++.+|||+
T Consensus        81 vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         81 ALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             HHHHHHhhcCCCCEEEEE
Confidence             21  1346788999997

>PRK13529 malate dehydrogenase; Provisional

Probab=96.31  E-value=0.029  Score=60.02  Aligned_cols=164  Identities=20%  Similarity=0.247  Sum_probs=110.7

Q ss_pred             HHHHHHHHHc-CCe---EEEEeCCCCCC--------------------------HHHHHHHHHHhhcCCCccEEEEeCCC
Q 017184          133 RNKKKACQSV-GIN---SFEVHLPEDTS--------------------------EQEVLKHISVFNDDPSVHGILVQLPL  182 (375)
Q Consensus       133 ~~k~k~a~~~-GI~---~~~~~l~~~vs--------------------------~~el~~~I~~LN~D~~V~GIlVqlPL  182 (375)
                      ..|.-.+..+ ||+   +.-+.|+..+.                          -+|+.++++++-  |++   +||+==
T Consensus       173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~--P~~---~I~~ED  247 (563)
T PRK13529        173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF--PNA---LLQFED  247 (563)
T ss_pred             ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC--CCe---EEehhh
Confidence            4566666666 688   77677764322                          257777777775  553   444321


Q ss_pred             CCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHH
Q 017184          183 PCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL  262 (375)
Q Consensus       183 p~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL  262 (375)
                      -..-+.-++++..  .+++-.+|          ++..+---+|-.|++..++-.+.+++..++++.|+|.+ |..+|.+|
T Consensus       248 f~~~~af~iL~ry--r~~i~~Fn----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsA-giGia~ll  314 (563)
T PRK13529        248 FAQKNARRILERY--RDEICTFN----------DDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSA-GCGIADQI  314 (563)
T ss_pred             cCCchHHHHHHHh--ccCCCeec----------cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHH
Confidence            1222334444443  22332222          22334445566788999999999999999999999997 99999988


Q ss_pred             hh----CCC-------eEEEEcCC--------------------C------------CCHHhhccCC--cEEEEccCCCC
Q 017184          263 QR----EDA-------TVSIVHSR--------------------T------------KNPEEITRQA--DIIISAVGQPN  297 (375)
Q Consensus       263 ~~----~gA-------tVtv~hs~--------------------t------------~~L~~~l~~A--DIVIsAvG~p~  297 (375)
                      ..    +|.       .+++|+++                    +            .+|.+.++.+  |++|-..+.|+
T Consensus       315 ~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g  394 (563)
T PRK13529        315 VAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPG  394 (563)
T ss_pred             HHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCC
Confidence            86    576       68888765                    0            2578889988  99999999889


Q ss_pred             cccCCCcCC------CcEEEEee
Q 017184          298 MVRGSWIKP------GAVIIDVG  314 (375)
Q Consensus       298 ~I~~~~vk~------gavVIDvg  314 (375)
                      .+++++|+.      .-+|+=+.
T Consensus       395 ~Ft~evv~~Ma~~~erPIIFaLS  417 (563)
T PRK13529        395 AFTEEIVKEMAAHCERPIIFPLS  417 (563)
T ss_pred             CCCHHHHHHHHhcCCCCEEEECC
Confidence            999988753      45666655

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.26  E-value=0.32  Score=48.30  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=101.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhh
Q 017184          117 LAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNA  194 (375)
Q Consensus       117 LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~  194 (375)
                      ....++=+  .|..=--+=..++.++|.++.++.-...  ...|.+.+.+.-|+.-  +|+|.+-.|-..      .++.
T Consensus        41 ~v~~lF~e--pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~~~------~~~~  110 (304)
T TIGR00658        41 TLALIFEK--PSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYKHE------DVEE  110 (304)
T ss_pred             EEEEEecC--CCcchHHHHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCChH------HHHH
Confidence            44444433  3433334557889999999887743211  1135677777777764  788998866321      2222


Q ss_pred             CCcccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          195 VSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       195 I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      +...-   .+-.+|.|       .....||=+.+= +.+.++.| .++|.+|+++|-..-|.+.++.+|...|++|++++
T Consensus       111 ~a~~~---~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~  179 (304)
T TIGR00658       111 LAKYA---SVPVINGL-------TDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVAT  179 (304)
T ss_pred             HHHhC---CCCEEECC-------CCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEEC
Confidence            32211   23445642       134668877774 44445554 59999999999966689999999999999999996


Q ss_pred             CC-------------------------CCCHHhhccCCcEEEEc
Q 017184          274 SR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       274 s~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      -.                         +.|+++.+++||+|.+-
T Consensus       180 P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       180 PEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             CchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            22                         24677899999999975

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.25  E-value=0.092  Score=54.69  Aligned_cols=150  Identities=13%  Similarity=0.084  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |.----+=..++.++|.++.++.=+.+.   ..|-+.+...-|+.-  +|+|.+-.|  .|-..+.+.+..       .+
T Consensus       137 STRTR~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y--~D~IviR~~--~~~~~~e~A~~s-------~v  205 (429)
T PRK11891        137 STRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGY--VDALVIRHP--EQGSVAEFARAT-------NL  205 (429)
T ss_pred             CchhHHHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHh--CCEEEEeCC--chhHHHHHHHhC-------CC
Confidence            4433345677889999998877321111   124566666666654  788888865  322223332221       23


Q ss_pred             ccchhhhcccCCCccccccCCHHH-HHHHHHHhCC---CCCCCEEEEEcCC--cccHHHHHHHHhhC-CCeEEEEcCC--
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGF---DIKGKRAVVIGRS--NIVGMPAALLLQRE-DATVSIVHSR--  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i---~l~GK~vvVIGrs--~~VGkpla~lL~~~-gAtVtv~hs~--  275 (375)
                      -.+|.|      ..+.+.||=+.+ ++.+.++.+.   .++|++|+++|-+  +-|.+.++.+|... |++|++++-.  
T Consensus       206 PVINAg------dg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~  279 (429)
T PRK11891        206 PVINGG------DGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTL  279 (429)
T ss_pred             CEEECC------CCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcc
Confidence            445642      124567998887 4555566542   4899999999996  34588888887775 9999998632  


Q ss_pred             -------------------CCCHHhhccCCcEEEEccC
Q 017184          276 -------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                                         +.|+.+.++.||+|.+..+
T Consensus       280 ~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        280 EMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             ccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence                               3577889999999998654

>PLN02527 aspartate carbamoyltransferase

Probab=96.23  E-value=0.12  Score=51.47  Aligned_cols=148  Identities=14%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCC-CC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPE-DT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~-~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      |..=--+=..++.++|.++.++.-.. +.   ..|.+.+.++-|+.-  +|+|.+-.|-..  ....+.+..    .   
T Consensus        50 StRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~~~--~~~~~a~~~----~---  118 (306)
T PLN02527         50 STRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFESG--AARRAAATA----E---  118 (306)
T ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCChh--HHHHHHHhC----C---
Confidence            44444466788999999998776431 11   236677777777764  789998866322  223332221    1   


Q ss_pred             cccchhhhcccCCCccccccCCHHHHH-HHHHHhCCCCCCCEEEEEcCC-c-ccHHHHHHHHhhC-CCeEEEEcCC----
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCI-ELLHRYGFDIKGKRAVVIGRS-N-IVGMPAALLLQRE-DATVSIVHSR----  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi-~lL~~~~i~l~GK~vvVIGrs-~-~VGkpla~lL~~~-gAtVtv~hs~----  275 (375)
                      +-.+|.|-      .+...||=+.+=+ .+.++.| +++|++|+++|-+ + -|.+.++..|... |++|++++-.    
T Consensus       119 vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~  191 (306)
T PLN02527        119 IPVINAGD------GPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKM  191 (306)
T ss_pred             CCEEECCC------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            33445421      2346799888744 4444454 6999999999976 3 2588888887776 8999988532    


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc
Q 017184          276 -----------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv  293 (375)
                                       +.|+++.++.||+|.+..
T Consensus       192 ~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        192 KDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             CHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence                             247789999999999854

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.21  E-value=0.0084  Score=62.18  Aligned_cols=71  Identities=21%  Similarity=0.363  Sum_probs=55.1

Q ss_pred             EEEEEcC-CcccHHHHHHHHhhCCCeEEEEcCCC---------------CCHHhhccCCcEEEEccCCCC---ccc--CC
Q 017184          244 RAVVIGR-SNIVGMPAALLLQREDATVSIVHSRT---------------KNPEEITRQADIIISAVGQPN---MVR--GS  302 (375)
Q Consensus       244 ~vvVIGr-s~~VGkpla~lL~~~gAtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~---~I~--~~  302 (375)
                      ++.|||. |. +|..++..|.+.|.+|+++.++.               .+..+.+.++|+||.+++...   .+.  ..
T Consensus         2 kI~IIGG~G~-mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~   80 (437)
T PRK08655          2 KISIIGGTGG-LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP   80 (437)
T ss_pred             EEEEEecCCH-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            6899984 55 59999999999999999987652               245567889999999998532   222  24


Q ss_pred             CcCCCcEEEEeee
Q 017184          303 WIKPGAVIIDVGI  315 (375)
Q Consensus       303 ~vk~gavVIDvgi  315 (375)
                      +++++++|+|++.
T Consensus        81 ~l~~~~iViDvsS   93 (437)
T PRK08655         81 HVKEGSLLMDVTS   93 (437)
T ss_pred             hCCCCCEEEEccc
Confidence            5789999999995

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.20  E-value=0.0057  Score=59.46  Aligned_cols=91  Identities=22%  Similarity=0.325  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhC----CC-------eEEEEcCC------------------
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE----DA-------TVSIVHSR------------------  275 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~----gA-------tVtv~hs~------------------  275 (375)
                      |-.|++..++-.+.+|+..+++++|+|-. |-.++.+|...    |.       .+++++++                  
T Consensus         8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a   86 (255)
T PF03949_consen    8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA   86 (255)
T ss_dssp             HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence            34678999999999999999999999987 99998888776    76       48888765                  


Q ss_pred             --------CCCHHhhccCC--cEEEEccCCCCcccCCCcCC------CcEEEEeeecC
Q 017184          276 --------TKNPEEITRQA--DIIISAVGQPNMVRGSWIKP------GAVIIDVGINP  317 (375)
Q Consensus       276 --------t~~L~~~l~~A--DIVIsAvG~p~~I~~~~vk~------gavVIDvgin~  317 (375)
                              ..+|.+.++.+  |++|-..|.|+.+++|+++.      .-+|+=+. ||
T Consensus        87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NP  143 (255)
T PF03949_consen   87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NP  143 (255)
T ss_dssp             BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SS
T ss_pred             ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CC
Confidence                    12788999999  99999999999999998853      44666665 44

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.18  E-value=0.0082  Score=58.79  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCH---HhhccCCcEEEEccCCCC---ccc--C
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNP---EEITRQADIIISAVGQPN---MVR--G  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L---~~~l~~ADIVIsAvG~p~---~I~--~  301 (375)
                      +|.|||.|.+ |.+++..|.+.|.+|++.+++.              .++   .+.+.++|+||.+++...   .+.  .
T Consensus         2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            6899999886 9999999999999999988762              122   334567899999988652   121  1


Q ss_pred             CCcCCCcEEEEeeec
Q 017184          302 SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ~~vk~gavVIDvgin  316 (375)
                      ..+++|.+|||.+..
T Consensus        81 ~~l~~g~ivid~st~   95 (298)
T TIGR00872        81 PTLEKGDIVIDGGNS   95 (298)
T ss_pred             hhCCCCCEEEECCCC
Confidence            346889999998765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.14  E-value=0.0098  Score=58.70  Aligned_cols=73  Identities=22%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------CCHHhhccCCcEEEEcc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------~~L~~~l~~ADIVIsAv  293 (375)
                      ..+|.|||.|.+ |.+++..|++.|.+|++++++.                            .++.+.++++|+||.++
T Consensus         4 ~m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v   82 (328)
T PRK14618          4 GMRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV   82 (328)
T ss_pred             CCeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence            357999999885 9999999999999999987641                            14556678999999999


Q ss_pred             CCCCccc-CCCcCCCcEEEEeee
Q 017184          294 GQPNMVR-GSWIKPGAVIIDVGI  315 (375)
Q Consensus       294 G~p~~I~-~~~vk~gavVIDvgi  315 (375)
                      ....+-. -+.++++.++||+..
T Consensus        83 ~~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         83 PSKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             chHHHHHHHHhcCcCCEEEEEee
Confidence            8764311 134678889999864

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=96.14  E-value=0.58  Score=46.56  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++. +.+.   .-|.+.+.++-|+.-  +|+|.+-.|-  |    ..++.+...-+   +
T Consensus        49 STRTR~SFE~A~~~LGg~~i~l~-~~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~--~----~~~~~~a~~~~---v  116 (302)
T PRK14805         49 SLRTRVSFDIGINKLGGHCLYLD-QQNGALGKRESVADFAANLSCW--ADAIVARVFS--H----STIEQLAEHGS---V  116 (302)
T ss_pred             CchHHHHHHHHHHHcCCcEEECC-CCcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCC--h----hHHHHHHHhCC---C
Confidence            43333466789999999988764 2221   235677777777764  8899988653  2    22333322222   3


Q ss_pred             ccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------  275 (375)
                      -.+|.|       .+...||=+.+=+--+++...+++|++|+++|-+..|.+.++.+|...|++|++|+-.         
T Consensus       117 PVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~  189 (302)
T PRK14805        117 PVINAL-------CDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIV  189 (302)
T ss_pred             CEEECC-------CCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHH
Confidence            455642       2246799888744444444347999999999998889999999999999999999632         


Q ss_pred             ----------------CCCHHhhccCCcEEEEcc
Q 017184          276 ----------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 ----------------t~~L~~~l~~ADIVIsAv  293 (375)
                                      +.++ +.++.||+|.+-+
T Consensus       190 ~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        190 AEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence                            1233 4588999988743

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.14  E-value=0.0092  Score=58.05  Aligned_cols=74  Identities=26%  Similarity=0.433  Sum_probs=55.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------CCHHhhccCCcEEEEccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      ++|.|||.|.+ |.+++..|++.|.+|+++++..                            .+..+.++++|+||.++.
T Consensus         2 mkI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (325)
T PRK00094          2 MKIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP   80 (325)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence            37999999885 9999999999999999987641                            134456789999999998


Q ss_pred             CCCc---cc--CCCcCCCcEEEEe--eecC
Q 017184          295 QPNM---VR--GSWIKPGAVIIDV--GINP  317 (375)
Q Consensus       295 ~p~~---I~--~~~vk~gavVIDv--gin~  317 (375)
                      ....   +.  ..+++++.+|||+  |+.+
T Consensus        81 ~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         81 SQALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            6431   11  1356788999999  5544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.14  E-value=0.011  Score=56.41  Aligned_cols=68  Identities=24%  Similarity=0.386  Sum_probs=50.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC----eEEEE-cCCC--------------CCHHhhccCCcEEEEccCCCCccc----
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA----TVSIV-HSRT--------------KNPEEITRQADIIISAVGQPNMVR----  300 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA----tVtv~-hs~t--------------~~L~~~l~~ADIVIsAvG~p~~I~----  300 (375)
                      ++.+||.|.+ |.+++..|++.|.    +|+++ +++.              .+..+.++++|+||.++ .|..+.    
T Consensus         2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~   79 (266)
T PLN02688          2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLT   79 (266)
T ss_pred             eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHH
Confidence            5899999886 9999999999887    88888 6542              24556778999999999 454221    


Q ss_pred             --CCCcCCCcEEEEe
Q 017184          301 --GSWIKPGAVIIDV  313 (375)
Q Consensus       301 --~~~vk~gavVIDv  313 (375)
                        ...++++.+||.+
T Consensus        80 ~l~~~~~~~~~iIs~   94 (266)
T PLN02688         80 ELRPLLSKDKLLVSV   94 (266)
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1245677777765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.13  E-value=0.01  Score=59.69  Aligned_cols=71  Identities=25%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC---cccC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN---MVRG  301 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~---~I~~  301 (375)
                      .++||+|.|||.|.+ |++++..|...|.+|++..+..              .+..+.+++||+|+.+++...   ++..
T Consensus        14 ~L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~   92 (330)
T PRK05479         14 LIKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEE   92 (330)
T ss_pred             hhCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence            368999999999986 9999999999999988875531              256678899999999998432   2211


Q ss_pred             ---CCcCCCcEE
Q 017184          302 ---SWIKPGAVI  310 (375)
Q Consensus       302 ---~~vk~gavV  310 (375)
                         ..+++|++|
T Consensus        93 ~I~~~Lk~g~iL  104 (330)
T PRK05479         93 EIEPNLKEGAAL  104 (330)
T ss_pred             HHHhcCCCCCEE
Confidence               346778766

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.13  E-value=0.012  Score=57.51  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccC---CcEEEEccCCCCc----cc--
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQ---ADIIISAVGQPNM----VR--  300 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~---ADIVIsAvG~p~~----I~--  300 (375)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+..+.   +|+||++++....    +.  
T Consensus         2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            6899999986 9999999999999999998762              244455554   6999999886532    11  


Q ss_pred             CCCcCCCcEEEEeeec
Q 017184          301 GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 ~~~vk~gavVIDvgin  316 (375)
                      .+.+++|.++||.+..
T Consensus        81 ~~~l~~g~ivid~st~   96 (301)
T PRK09599         81 APLLSPGDIVIDGGNS   96 (301)
T ss_pred             HhhCCCCCEEEeCCCC
Confidence            1356788899998654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.12  E-value=0.011  Score=60.46  Aligned_cols=37  Identities=27%  Similarity=0.534  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+|+|+|.|. +|+++|..|+++|++|+++.+..
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999 59999999999999999998763

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.09  E-value=0.013  Score=56.51  Aligned_cols=70  Identities=24%  Similarity=0.321  Sum_probs=52.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCc---cc--C
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT---------------KNPEEITRQADIIISAVGQPNM---VR--G  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~---I~--~  301 (375)
                      ++.|||.|.+ |.+++..|.+.|.  +|++++++.               .+..+. .++|+||.+++....   +.  .
T Consensus         2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL-KKCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH-hcCCEEEEeCcHHHHHHHHHHHh
Confidence            6899999885 9999999998885  688777642               234443 459999999985432   21  1


Q ss_pred             CCcCCCcEEEEeeec
Q 017184          302 SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ~~vk~gavVIDvgin  316 (375)
                      . ++++.+|+|+|..
T Consensus        80 ~-l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D-IKENTTIIDLGST   93 (275)
T ss_pred             c-cCCCCEEEECccc
Confidence            2 7889999999864

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.08  E-value=0.15  Score=50.74  Aligned_cols=150  Identities=13%  Similarity=0.215  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCC--CCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPE--DTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH  205 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~--~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~  205 (375)
                      |..=--+=..++.++|-++.++.-.+  -...|-+.+.++-|+.- ++|+|.+-.|-.      ..+..+...-   .+-
T Consensus        56 STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y-~~D~iv~R~~~~------~~~~~~a~~~---~vP  125 (305)
T PRK00856         56 STRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAM-GADAIVIRHPQS------GAARLLAESS---DVP  125 (305)
T ss_pred             CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhc-CCCEEEEeCCCh------HHHHHHHHHC---CCC
Confidence            54444466788999999987664221  01124456666666542 378888886532      2223332211   234


Q ss_pred             cchhhhcccCCCccccccCCHHH-HHHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcCC-------
Q 017184          206 PLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHSR-------  275 (375)
Q Consensus       206 ~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs~-------  275 (375)
                      .+|.|-      .+...||=+.+ ++.+.++.| +++|++|++||-+  +-|.+.++.++...|++|++|+-.       
T Consensus       126 VINa~~------g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~  198 (305)
T PRK00856        126 VINAGD------GSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM  198 (305)
T ss_pred             EEECCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc
Confidence            455421      13467998887 455555555 6999999999885  446999999999999999999632       


Q ss_pred             -----CCCHHhhccCCcEEEEccC
Q 017184          276 -----TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       276 -----t~~L~~~l~~ADIVIsAvG  294 (375)
                           +.|+.+.++.||+|.+...
T Consensus       199 ~~~~~~~d~~ea~~~aDvvyt~~~  222 (305)
T PRK00856        199 PEYGVHTDLDEVIEDADVVMMLRV  222 (305)
T ss_pred             cceEEECCHHHHhCCCCEEEECCc
Confidence                 3567899999999998653

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.07  E-value=0.0082  Score=52.43  Aligned_cols=72  Identities=29%  Similarity=0.396  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCCc------c
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------KNPEEITRQADIIISAVGQPNM------V  299 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~~------I  299 (375)
                      --+|.|||+|+ ||..|+..|.+.|..|.-+.+++                .++.+.+++||++|-+++--.+      +
T Consensus        10 ~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL   88 (127)
T ss_dssp             --EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred             ccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence            34899999999 59999999999999988876553                2456789999999999985321      2


Q ss_pred             -cCCCcCCCcEEEEee
Q 017184          300 -RGSWIKPGAVIIDVG  314 (375)
Q Consensus       300 -~~~~vk~gavVIDvg  314 (375)
                       ....+++|.+|+=+.
T Consensus        89 a~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HCC--S-TT-EEEES-
T ss_pred             HHhccCCCCcEEEECC
Confidence             223467888887764

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.06  E-value=0.012  Score=57.17  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------------------------------CCCHHhhcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------------------------------TKNPEEITR  284 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------------------------------t~~L~~~l~  284 (375)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++                                      +.++++.++
T Consensus         2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            57999999875 999999999999999998654                                      234557789


Q ss_pred             CCcEEEEccCCCCccc-------CCCcCCCcEE-EEeee
Q 017184          285 QADIIISAVGQPNMVR-------GSWIKPGAVI-IDVGI  315 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~-------~~~vk~gavV-IDvgi  315 (375)
                      +||+||.+++...-++       .+.+++++++ +|...
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            9999999998653111       1356777755 56554

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.04  E-value=0.14  Score=50.87  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=98.1

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      .|..=--+=..++.++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+-.|-.      ..++.+...   -++
T Consensus        53 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~--~D~iv~R~~~~------~~~~~~a~~---~~v  121 (304)
T PRK00779         53 PSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY--VDAIMIRTFEH------ETLEELAEY---STV  121 (304)
T ss_pred             CCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh--CCEEEEcCCCh------hHHHHHHHh---CCC
Confidence            3444444667899999999887643210  1135577777777764  77888776522      223333221   124


Q ss_pred             ccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------  275 (375)
                      -.+|.|.       ....||=+.+=+--+++...+++|++++++|-.+-|.+.++.+|...|++|++|+-.         
T Consensus       122 PVINag~-------~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~  194 (304)
T PRK00779        122 PVINGLT-------DLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIV  194 (304)
T ss_pred             CEEeCCC-------CCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHH
Confidence            4567541       235688777644444333346999999999995667999999999999999998632         


Q ss_pred             -------------CCCHHhhccCCcEEEEc
Q 017184          276 -------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 -------------t~~L~~~l~~ADIVIsA  292 (375)
                                   +.|+++.++.||+|.+-
T Consensus       195 ~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        195 EKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             HHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                         24678889999999975

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.02  E-value=0.016  Score=58.68  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCC--------------------CCCHHhhccCCcEEEEccCCCC--
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSR--------------------TKNPEEITRQADIIISAVGQPN--  297 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~--------------------t~~L~~~l~~ADIVIsAvG~p~--  297 (375)
                      -+++.|||.|.- ++.-+..+.. +. -+|++.+++                    ..++++.+++||||+++|+...  
T Consensus       129 a~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA  207 (346)
T ss_pred             CcEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence            466777777764 6554433332 22 356666554                    1357789999999999998643  


Q ss_pred             -cccCCCcCCCcEEEEeeec
Q 017184          298 -MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 -~I~~~~vk~gavVIDvgin  316 (375)
                       +++.+|+|+|+.|.=+|.+
T Consensus       208 Pvl~~~~lkpG~hV~aIGs~  227 (346)
T PRK07589        208 TILTDDMVEPGMHINAVGGD  227 (346)
T ss_pred             ceecHHHcCCCcEEEecCCC
Confidence             5899999999999999854

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.01  E-value=0.014  Score=57.52  Aligned_cols=53  Identities=23%  Similarity=0.430  Sum_probs=42.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCCC------------------------CHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRTK------------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t~------------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      ++|+|||.|+ ||..++..|+.+|  .+|++++++..                        .-.+.+++||+||.++|.|
T Consensus         1 ~kI~IIGaG~-vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGH-VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            4799999988 5999999999998  37999876421                        1124578999999999976

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.98  E-value=0.021  Score=55.54  Aligned_cols=55  Identities=29%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             ccccCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcCC
Q 017184          220 LFIPCTPKGCIE----LLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR  275 (375)
Q Consensus       220 ~~~PcT~~gvi~----lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs~  275 (375)
                      +--+.|.+|++.    ++++.+.+++|++|+|-|.|+ ||..++.+|...|+.|+ |++++
T Consensus        12 gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~   71 (254)
T cd05313          12 IRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK   71 (254)
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence            445789888754    455678999999999999999 59999999999999877 77643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.96  E-value=0.018  Score=58.93  Aligned_cols=72  Identities=29%  Similarity=0.399  Sum_probs=54.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCcEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQADII  289 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~ADIV  289 (375)
                      +|.|||.|.+ |.++|..|++.|.+|++++++.                                  .++.+.++++|+|
T Consensus         2 kI~vIGlG~~-G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYV-GLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             EEEEECCCch-hHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            6899999885 9999999999999999987642                                  1234557889999


Q ss_pred             EEccCCCCc---------cc------CCCcCCCcEEEEeeec
Q 017184          290 ISAVGQPNM---------VR------GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       290 IsAvG~p~~---------I~------~~~vk~gavVIDvgin  316 (375)
                      |.+++.|.-         +.      ...+++|.+|||.+.-
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv  122 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV  122 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence            999997731         11      1245788899987743

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.017  Score=59.09  Aligned_cols=123  Identities=18%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---HHhhccCCcEEEEccCCCCcccCCCcC--CCcEEEEe
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---PEEITRQADIIISAVGQPNMVRGSWIK--PGAVIIDV  313 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---L~~~l~~ADIVIsAvG~p~~I~~~~vk--~gavVIDv  313 (375)
                      +++||+++|+|.|+ .|++++..|+++|++|+++.++...   ..+.++...+-+. .|.   ...+.+.  ...+|+--
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~---~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGS---HPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCC---CCHHHhcCcCCEEEECC
Confidence            36899999999999 5999999999999999999765321   1122222222111 110   0001111  22344444


Q ss_pred             eecCCCCCC----CCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          314 GINPVEDAK----SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       314 gin~~~~~~----~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      |+++.. +.    ...|-+++++.++-..... ..+.-|-|-.|.-|+..|+.++++.+
T Consensus        77 gi~~~~-~~~~~a~~~~i~v~~~~el~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         77 GIPYTN-PMVEKALEKGIPIITEVELAYLISE-APIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CCCCCC-HHHHHHHHCCCcEEeHHHHHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            444321 00    0123356777665221111 11223568899999999999998764

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.93  E-value=0.14  Score=52.10  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCC---CCCCHHHHHhhCC-cccc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLP---CHIDEQSILNAVS-MEKD  200 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp---~~i~~~~i~~~I~-p~KD  200 (375)
                      |..---+=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-.   .|-..+.+.+... --||
T Consensus        53 STRTR~SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~  129 (357)
T TIGR03316        53 STRTRFSFASAMNLLGLHAQDLDE-GKSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKD  129 (357)
T ss_pred             CcchHHHHHHHHHHcCCcEEEeCC-ccccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhcccc
Confidence            433333557789999999988763 2221   35577777777764  78999987642   2111122222211 0122


Q ss_pred             -c--CccccchhhhcccCCCccccccCCHHHH-HHHHHHhCC--CCCCCEEEEEcC-------CcccHHHHHHHHhhCCC
Q 017184          201 -V--DGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGF--DIKGKRAVVIGR-------SNIVGMPAALLLQREDA  267 (375)
Q Consensus       201 -V--DGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i--~l~GK~vvVIGr-------s~~VGkpla~lL~~~gA  267 (375)
                       |  -.+-.+|.|       .+.+.||=+.+= +.+.++.|.  +++|++|+++|.       ...|.+.++.++...|+
T Consensus       130 ~~~~s~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~  202 (357)
T TIGR03316       130 GVLEQRPPLVNLQ-------CDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGM  202 (357)
T ss_pred             ccccCCCCEEECC-------CCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCC
Confidence             0  012334542       234779988874 555556663  489999999963       33567888888888999


Q ss_pred             eEEEEcCC-------------------------CCCHHhhccCCcEEEEc
Q 017184          268 TVSIVHSR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       268 tVtv~hs~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      +|++++-.                         +.|+.+.+++||+|.+-
T Consensus       203 ~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  252 (357)
T TIGR03316       203 DVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPK  252 (357)
T ss_pred             EEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            99999633                         24567888999998866

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.012  Score=54.57  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++++||+++|.|+++-+|+.++..|.++|++|+++.++.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999988899999999999999999887653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.87  E-value=0.014  Score=55.68  Aligned_cols=60  Identities=13%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-CCH-----------------HhhccCCcEEEEccCCCCc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNP-----------------EEITRQADIIISAVGQPNM  298 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~~L-----------------~~~l~~ADIVIsAvG~p~~  298 (375)
                      ++++|++|+|||.|.+ +.-=+..|++.||.|||+.-.- +++                 .+.+..+++||.||+.+.+
T Consensus        21 l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~v   98 (223)
T PRK05562         21 LLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKL   98 (223)
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHH
Confidence            5667999999999996 7766778888999999985431 111                 2446789999999997653

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.81  E-value=0.023  Score=54.07  Aligned_cols=53  Identities=28%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             cccCCHHHHHHHH----HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcC
Q 017184          221 FIPCTPKGCIELL----HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHS  274 (375)
Q Consensus       221 ~~PcT~~gvi~lL----~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs  274 (375)
                      ..+.|.+|+...+    ++.+.+++|++|+|.|.|+ ||+.++.+|.+.|++|+ ++.+
T Consensus         6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence            3478888876554    4567789999999999988 59999999999999887 7766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.81  E-value=0.01  Score=54.69  Aligned_cols=53  Identities=30%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------------CCCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------------TKNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------------t~~L~~~l~~ADI  288 (375)
                      ++|+|||.|.+ |.|+|..|++.|.+|+.+..+                                  +.+..+.+++||+
T Consensus         1 M~I~ViGlGyv-Gl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYV-GLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STT-HHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcc-hHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            47999999885 999999999999999998643                                  1344566777888


Q ss_pred             EEEccCCC
Q 017184          289 IISAVGQP  296 (375)
Q Consensus       289 VIsAvG~p  296 (375)
                      +|.++|-|
T Consensus        80 ~~I~VpTP   87 (185)
T PF03721_consen   80 VFICVPTP   87 (185)
T ss_dssp             EEE----E
T ss_pred             EEEecCCC
Confidence            88877755

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.80  E-value=0.061  Score=56.23  Aligned_cols=51  Identities=33%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      -.+.|..|+.    +.+++.+.+++|++|+|.|.|+ ||+.+|.+|...|++|+.+
T Consensus       207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            4578988875    4555678999999999999998 5999999999999987766

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.79  E-value=0.071  Score=57.05  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             HHHHHHHHHc-CCe---EEEEeCCCCCC--------------------------HHHHHHHHHHhhcCCCccEEEEeCCC
Q 017184          133 RNKKKACQSV-GIN---SFEVHLPEDTS--------------------------EQEVLKHISVFNDDPSVHGILVQLPL  182 (375)
Q Consensus       133 ~~k~k~a~~~-GI~---~~~~~l~~~vs--------------------------~~el~~~I~~LN~D~~V~GIlVqlPL  182 (375)
                      ..|...+..+ ||+   +.-+.|+..++                          -+|+.++++++-  |+   .+||+==
T Consensus       175 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~--P~---~~Iq~ED  249 (559)
T PTZ00317        175 IGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW--PN---AVVQFED  249 (559)
T ss_pred             ccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC--CC---eEEehhh
Confidence            4566666666 588   66666654332                          356666666665  44   2555422


Q ss_pred             CCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHH
Q 017184          183 PCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL  262 (375)
Q Consensus       183 p~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL  262 (375)
                      ...-+.-++++...  +++-.+   |       ++..+---++-.|++..++-.+.+++..++++.|+|.+ |..+|.+|
T Consensus       250 f~~~naf~iL~kyr--~~i~~F---n-------DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll  316 (559)
T PTZ00317        250 FSNNHCFDLLERYQ--NKYRCF---N-------DDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSA-AIGVANNI  316 (559)
T ss_pred             cCCccHHHHHHHhc--cCCCEe---c-------ccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHH
Confidence            22223344444432  122221   1       22334445667889999999999999999999999997 99999888


Q ss_pred             hh----CCC-------eEEEEcCC-----------------------------CCCHHhhccCC--cEEEEccCCCCccc
Q 017184          263 QR----EDA-------TVSIVHSR-----------------------------TKNPEEITRQA--DIIISAVGQPNMVR  300 (375)
Q Consensus       263 ~~----~gA-------tVtv~hs~-----------------------------t~~L~~~l~~A--DIVIsAvG~p~~I~  300 (375)
                      ..    .|.       .+++++++                             ..+|.+.++.+  |++|-+.+.|+.++
T Consensus       317 ~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft  396 (559)
T PTZ00317        317 ADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFT  396 (559)
T ss_pred             HHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence            74    665       68887654                             12577888888  99999999899999


Q ss_pred             CCCcC------CCcEEEEee
Q 017184          301 GSWIK------PGAVIIDVG  314 (375)
Q Consensus       301 ~~~vk------~gavVIDvg  314 (375)
                      +++|+      +.-+|+=+.
T Consensus       397 ~evv~~Ma~~~~rPIIFaLS  416 (559)
T PTZ00317        397 EEVVKTMASNVERPIIFPLS  416 (559)
T ss_pred             HHHHHHHHhcCCCCEEEECC
Confidence            88875      355666655

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.78  E-value=0.018  Score=57.40  Aligned_cols=55  Identities=29%  Similarity=0.389  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      |+||++.|||.|.+ |.+++..|.+.|.+|++..+..              .+..+.+++||+||.+++-
T Consensus         1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence            58999999999996 9999999999998877653321              1355678999999999984

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06398 aldose dehydrogenase; Validated

Probab=95.75  E-value=0.023  Score=53.51  Aligned_cols=57  Identities=23%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------CHHh-------hccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------NPEE-------ITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~L~~-------~l~~ADIVIsAvG~  295 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|++..++..                ++++       ....-|+||+.+|.
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~   82 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI   82 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            578999999999988999999999999999998765421                1111       22357999998885

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.019  Score=52.93  Aligned_cols=37  Identities=30%  Similarity=0.466  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   38 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD   38 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            4789999999999999999999999999999888665

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.70  E-value=0.3  Score=50.46  Aligned_cols=167  Identities=17%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCC---CCCCCHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPL---PCHIDEQS  190 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPL---p~~i~~~~  190 (375)
                      ++++.++-+  .|..=--+=..++.++|-++.++.-.+.  ..-|-+.+.++-|+.-  +|+|.+-.|-   ..+-..+.
T Consensus        60 ~~~~~lF~e--pSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~e  135 (395)
T PRK07200         60 GLGISVFRD--NSTRTRFSYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMRE  135 (395)
T ss_pred             CeEEEEEcC--CCchhHHHHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHH
Confidence            344434443  3443334567889999999887743210  1125577777777764  8899998774   22211222


Q ss_pred             HHhhCCc--cccc-Cccc-cchhhhcccCCCccccccCCHHH-HHHHHHHhCC--CCCCCEEEEEc-------CCcccHH
Q 017184          191 ILNAVSM--EKDV-DGFH-PLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGF--DIKGKRAVVIG-------RSNIVGM  256 (375)
Q Consensus       191 i~~~I~p--~KDV-DGl~-~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i--~l~GK~vvVIG-------rs~~VGk  256 (375)
                      +.+...-  .++| -..- .+|.+       .+...||=+.+ ++.+.++.|-  .++|++|+++|       ++..|.+
T Consensus       136 la~~~~~~~~~~~~~~~pPVINa~-------~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~  208 (395)
T PRK07200        136 VGAAVDDGYKQGVLPQRPTLVNLQ-------CDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQ  208 (395)
T ss_pred             HHHHhhhhcccccccCCCeEEECC-------CCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHH
Confidence            2222110  0111 1222 25642       23567998777 4556566663  38999999985       4456789


Q ss_pred             HHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          257 PAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       257 pla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      .++.+|...|++|++++-.                         +.|+++.++.||+|.+-+
T Consensus       209 Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~  270 (395)
T PRK07200        209 GIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKS  270 (395)
T ss_pred             HHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            9999999999999998633                         246778999999999753

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.69  E-value=0.023  Score=58.70  Aligned_cols=120  Identities=23%  Similarity=0.183  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCcccHHH-HHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCc-CCCcEEEEeeecC
Q 017184          240 IKGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWI-KPGAVIIDVGINP  317 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkp-la~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~v-k~gavVIDvgin~  317 (375)
                      .++|++.|+|.|+. |+. +|.+|.++|++|++.+.+.....+.+++..+.+.. |.+    .+.+ ....+|+--|+++
T Consensus         5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence            47899999999998 999 79999999999999987643222224333443322 221    1122 1245555555554


Q ss_pred             CCCCC---CCCCceeecccchhh-hhh--hcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          318 VEDAK---SPRGYRLVGDVCYEE-ACE--VASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       318 ~~~~~---~~~g~kl~GDVd~~~-v~~--~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ....-   ...|-+++++.++-. ..+  ..-+   |-|=-|.-|+..|+.++++.+
T Consensus        79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~---ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIA---VAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEE---EECCCCHHHHHHHHHHHHHhc
Confidence            21000   012336788877632 211  2233   447788999999999999765

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.68  E-value=0.032  Score=55.55  Aligned_cols=56  Identities=25%  Similarity=0.446  Sum_probs=44.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCC--------------------------CCCHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSR--------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~--------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      ++.++|+|||+|. ||..++.+|+..| +++.+++.+                          +.+++ .+++||+||.+
T Consensus         3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit   80 (319)
T PTZ00117          3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT   80 (319)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence            4678999999976 5999999999888 788777542                          13444 77999999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus        81 ag~~~   85 (319)
T PTZ00117         81 AGVQR   85 (319)
T ss_pred             CCCCC
Confidence            98643

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.022  Score=54.08  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=44.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-C---------------------CHHhhccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-K---------------------NPEEITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~---------------------~L~~~l~~ADIVIsAvG~  295 (375)
                      .++||+++|.|+|+-+|+.++..|+++|++|+++.++. .                     ++.+...+-|++|+.+|.
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            46899999999988889999999999999998876543 1                     122345567888887774

>PLN02712 arogenate dehydrogenase

Probab=95.64  E-value=0.018  Score=62.89  Aligned_cols=76  Identities=20%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhc-cCCcEEEEccCCCC---ccc-
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEIT-RQADIIISAVGQPN---MVR-  300 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l-~~ADIVIsAvG~p~---~I~-  300 (375)
                      +-+.+++.|||.|.+ |..++..|.+.|.+|++++++.             .++.+.+ ++||+||.+++...   ++. 
T Consensus        49 ~~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~  127 (667)
T PLN02712         49 NTTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKS  127 (667)
T ss_pred             cCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHh
Confidence            345578999999885 9999999999999998887652             2344434 56999999998422   222 


Q ss_pred             --CCCcCCCcEEEEeee
Q 017184          301 --GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 --~~~vk~gavVIDvgi  315 (375)
                        ...+++|++|+|++.
T Consensus       128 l~~~~l~~g~iVvDv~S  144 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLS  144 (667)
T ss_pred             hhhhcCCCCeEEEECCC
Confidence              235788999999973

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.62  E-value=0.027  Score=51.61  Aligned_cols=57  Identities=21%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CH----H---hhccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NP----E---EITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L----~---~~l~~ADIVIsAvG~  295 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++..            |+    +   +.....|+||..+|.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            478999999999998999999999999999998876421            11    1   123457899988874

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.62  E-value=0.0073  Score=51.32  Aligned_cols=74  Identities=22%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-CeE-EEEcCCC---CCH-------------------HhhccCCcEEEEccCCC--C
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-ATV-SIVHSRT---KNP-------------------EEITRQADIIISAVGQP--N  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-AtV-tv~hs~t---~~L-------------------~~~l~~ADIVIsAvG~p--~  297 (375)
                      ||.|||+.|.+|+-+..+|.++- +++ .++.++.   +.+                   .+.+.++|+||.|++.-  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            68999988888999999999854 453 3343332   111                   13458999999998842  1


Q ss_pred             cccCCCcCCCcEEEEeeecC
Q 017184          298 MVRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       298 ~I~~~~vk~gavVIDvgin~  317 (375)
                      -+-+..+++|..|||.+-..
T Consensus        81 ~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHHHHHHTTSEEEESSSTT
T ss_pred             HHHHHHhhCCcEEEeCCHHH
Confidence            12233478899999998554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.62  E-value=0.086  Score=55.14  Aligned_cols=50  Identities=32%  Similarity=0.335  Sum_probs=42.8

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEE
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI  271 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv  271 (375)
                      -.+.|.+|++    +++++.+.+++||+|+|=|.|+ ||..+|..|.+.||+|+.
T Consensus       203 r~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        203 RPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVT  256 (445)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence            3467999875    5556778999999999999988 599999999999998776

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.018  Score=53.96  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999988899999999999999999987653

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.59  E-value=0.2  Score=50.59  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=91.8

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhh
Q 017184          134 NKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G  210 (375)
                      +=..++.++|.++.++.=+.+.   ..|-+.+.++-|+.-  +|+|.+-.|-..  ....+.+..    .   +-.+|.|
T Consensus        61 SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y--~D~IviR~~~~~--~~~~~a~~~----~---vPVINa~  129 (338)
T PRK08192         61 SFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTY--SDVIAMRHPDAG--SVKEFAEGS----R---VPVINGG  129 (338)
T ss_pred             HHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHc--CCEEEEeCCchh--HHHHHHHhC----C---CCEEECC
Confidence            5577899999998764211221   235577777777764  789998865322  222222221    1   3345542


Q ss_pred             hcccCCCccccccCCHHHH-HHHHHHh---CCCCCCCEEEEEcCC--cccHHHHHHHHhhC-CCeEEEEcCC--------
Q 017184          211 RLAMRGREPLFIPCTPKGC-IELLHRY---GFDIKGKRAVVIGRS--NIVGMPAALLLQRE-DATVSIVHSR--------  275 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gv-i~lL~~~---~i~l~GK~vvVIGrs--~~VGkpla~lL~~~-gAtVtv~hs~--------  275 (375)
                      -      .+...||=+.+= +.+.|+.   |.+++|+++++||-+  +-|...++.+|... |++|++++-.        
T Consensus       130 ~------g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~  203 (338)
T PRK08192        130 D------GSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYV  203 (338)
T ss_pred             C------CCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHH
Confidence            1      135679988874 4554543   347999999999995  33577777666544 8999888532        


Q ss_pred             -------------CCCHHhhccCCcEEEEccC
Q 017184          276 -------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       276 -------------t~~L~~~l~~ADIVIsAvG  294 (375)
                                   +.|+++.+++||+|.+..+
T Consensus       204 ~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~  235 (338)
T PRK08192        204 ISDIENAGHKITITDQLEGNLDKADILYLTRI  235 (338)
T ss_pred             HHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence                         2577899999999998543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.57  E-value=0.02  Score=53.55  Aligned_cols=69  Identities=22%  Similarity=0.324  Sum_probs=49.9

Q ss_pred             EEEEEc-CCcccHHHHHHHHhhCCCeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          244 RAVVIG-RSNIVGMPAALLLQREDATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIG-rs~~VGkpla~lL~~~gAtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ++.||| .|. +|..++..|.+.|.+|++.+++.                         .+..+.++++|+||.+++...
T Consensus         2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            689998 566 59999999999999999886642                         123456789999999998654


Q ss_pred             c---cc--CCCcCCCcEEEEee
Q 017184          298 M---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       298 ~---I~--~~~vk~gavVIDvg  314 (375)
                      +   +.  ...++ +.+|||+.
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~~  101 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISPV  101 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEec
Confidence            3   21  12233 47899983

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.55  E-value=0.032  Score=52.04  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..++||+++|.|+++-+|+.++..|.++|++|.++.++
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998889999999999999998877543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.55  E-value=0.027  Score=57.62  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-C-C-CeEEEEcCCC-----------------------CCHHhhccCCcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-E-D-ATVSIVHSRT-----------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~-g-AtVtv~hs~t-----------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      .-+++.|||.|.- ++.-...+.. + + -+|.+.+++.                       .+.++.+++|||||++|+
T Consensus       154 da~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~  232 (379)
T PRK06199        154 DSKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS  232 (379)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence            3578888888775 7776666654 2 2 3677776541                       346678999999999997


Q ss_pred             CC-------CcccCCCcCCCcEEEEeeecC
Q 017184          295 QP-------NMVRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       295 ~p-------~~I~~~~vk~gavVIDvgin~  317 (375)
                      ..       -++..+|+|||+.|+=+|...
T Consensus       233 s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~e  262 (379)
T PRK06199        233 GETGDPSTYPYVKREWVKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCCCcCcEecHHHcCCCcEEecCCccc
Confidence            42       257899999999888777543

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.031  Score=52.12  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999889999999999999999888764

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.017  Score=53.76  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999887654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.52  E-value=0.022  Score=60.20  Aligned_cols=73  Identities=25%  Similarity=0.358  Sum_probs=56.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhcc---CCcEEEEccCCCCcc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITR---QADIIISAVGQPNMV  299 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~---~ADIVIsAvG~p~~I  299 (375)
                      +|-+||-|.+ |.++|..|+++|.+|+++||+..                     ++++.++   ++|+||+.+.....+
T Consensus         8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            6899999886 99999999999999999998631                     2334444   499999998866532


Q ss_pred             c------CCCcCCCcEEEEeeecC
Q 017184          300 R------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~------~~~vk~gavVIDvgin~  317 (375)
                      +      ...+++|.++||.|...
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCC
Confidence            1      13468899999999763

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.50  E-value=0.023  Score=59.67  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=54.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHhhcc---CCcEEEEccCCCCc-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEEITR---QADIIISAVGQPNM-  298 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~~l~---~ADIVIsAvG~p~~-  298 (375)
                      .++.|||.|.. |.++|..|+++|.+|++++++.                    .++++.+.   ++|+||..+..+.. 
T Consensus         2 ~~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          2 SDIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             CEEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            36899999886 9999999999999999998752                    23444454   58988877654432 


Q ss_pred             ---cc--CCCcCCCcEEEEeeec
Q 017184          299 ---VR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 ---I~--~~~vk~gavVIDvgin  316 (375)
                         +.  ...+++|.+|||.|..
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCC
Confidence               21  1357889999999854

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.49  E-value=0.029  Score=54.43  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------------------------------CCCHHhhc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------------------------TKNPEEIT  283 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------------------------------t~~L~~~l  283 (375)
                      ++|.|||.|.+ |..+|..|++.|.+|+++.++                                       +.++++.+
T Consensus         4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            58999999775 999999999999999998543                                       23556678


Q ss_pred             cCCcEEEEccCCCC-----ccc--CCCcCCCcEEEEee
Q 017184          284 RQADIIISAVGQPN-----MVR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       284 ~~ADIVIsAvG~p~-----~I~--~~~vk~gavVIDvg  314 (375)
                      ++||+||.|++..-     ++.  ...+++++++.+..
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~snt  120 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNS  120 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence            99999999998531     111  13467777776644

>PRK07680 late competence protein ComER; Validated

Probab=95.48  E-value=0.022  Score=54.82  Aligned_cols=69  Identities=19%  Similarity=0.306  Sum_probs=51.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCCc----c
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRT----------------KNPEEITRQADIIISAVGQPNM----V  299 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~~----I  299 (375)
                      ++.|||.|.+ |.+++..|.+.|    .+|++++++.                .+..+.+.++|+||.++. |..    +
T Consensus         2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            5899999885 999999999887    3789988752                244566789999999995 332    2


Q ss_pred             c--CCCcCCCcEEEEee
Q 017184          300 R--GSWIKPGAVIIDVG  314 (375)
Q Consensus       300 ~--~~~vk~gavVIDvg  314 (375)
                      +  ...++++.+||++.
T Consensus        80 ~~l~~~l~~~~~iis~~   96 (273)
T PRK07680         80 QKLAPHLTDEHCLVSIT   96 (273)
T ss_pred             HHHHhhcCCCCEEEEEC
Confidence            1  13566788999986

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.47  E-value=0.029  Score=55.81  Aligned_cols=55  Identities=20%  Similarity=0.387  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCCC-----------------------CHHhhccCCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRTK-----------------------NPEEITRQADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t~-----------------------~L~~~l~~ADIVIsAvG~  295 (375)
                      .|+||.|||+|. ||..++..|+..|.  ++.+++.+..                       +-.+.+++|||||.++|.
T Consensus         5 ~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            578999999977 59999999998885  6777765311                       123568999999999997


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      |
T Consensus        84 ~   84 (315)
T PRK00066         84 P   84 (315)
T ss_pred             C
Confidence            5

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.37  E-value=0.055  Score=53.98  Aligned_cols=93  Identities=19%  Similarity=0.267  Sum_probs=62.1

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------HHh
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------PEE  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L~~  281 (375)
                      +|....++..+...+..-.|++|+|.|.|. ||..+++++...|++|+++......                     +.+
T Consensus       165 ~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~  243 (360)
T PLN02586        165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA  243 (360)
T ss_pred             hcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh
Confidence            444444455555555444799999999876 5999999999999987765332211                     112


Q ss_pred             hccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          282 ITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .+..+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       244 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        244 AIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             hcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence            2234799999999764332  2467888888889864

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.36  E-value=0.042  Score=51.98  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          228 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       228 gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      ++.+.+++.+.+++||+|+|.|.|+ ||+.++.+|.++|+ .|.++.++.
T Consensus         9 ~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211           9 AMKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             HHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3455666778899999999999998 59999999999987 577776653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.037  Score=57.33  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.||+|.|+|.|.. |++++.+|.+.|++|+++..+
T Consensus        12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCC
Confidence            46899999999998 999999999999999999865

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.33  E-value=0.03  Score=49.50  Aligned_cols=52  Identities=27%  Similarity=0.388  Sum_probs=43.5

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------CHHhhccCCcEEEEccCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      |+|+|+++.+|+.++..|+++|.+|+..-|+..                   .+.+.++.+|.||.++|.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence            689999888999999999999999999877632                   2456788999999999843

...

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.32  E-value=0.3  Score=50.39  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CCCCCCCEEEEEcCC---------cccHHHHHHHHhhCC-CeEEEEcCC-------------CCCHHhhccCCcEEEEcc
Q 017184          237 GFDIKGKRAVVIGRS---------NIVGMPAALLLQRED-ATVSIVHSR-------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~g-AtVtv~hs~-------------t~~L~~~l~~ADIVIsAv  293 (375)
                      +.+++||+|.|+|-+         +.-...++..|.++| ++|.+.+-.             ..++++.++.||.||..+
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            677899999999953         223678899999996 999885432             135778899999999999


Q ss_pred             CCCCcccCCC--cCCCcEEEE
Q 017184          294 GQPNMVRGSW--IKPGAVIID  312 (375)
Q Consensus       294 G~p~~I~~~~--vk~gavVID  312 (375)
                      ..+.|-..+|  ++. -+|||
T Consensus       395 ~~~~~~~~~~~~~~~-~~v~D  414 (415)
T PRK11064        395 DHSQFKAINGDNVHQ-QWVVD  414 (415)
T ss_pred             CCHHhccCCHHHhCC-CEEEe
Confidence            9987743332  444 37777

>PLN02477 glutamate dehydrogenase

Probab=95.27  E-value=0.04  Score=57.01  Aligned_cols=54  Identities=28%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcCC
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR  275 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs~  275 (375)
                      -.+.|..|+.    +.+++++.+++|++|+|.|.|+ ||+.++.+|.++|+.|+ |++++
T Consensus       181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        181 REAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence            3478888865    5556678999999999999988 59999999999999877 77664

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.031  Score=54.12  Aligned_cols=39  Identities=38%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ...++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~   73 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR   73 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            456789999999998888999999999999999998775

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.02  Score=53.56  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP  279 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L  279 (375)
                      +++||+++|.|+|.-+|+.++..|+++|++|.+++|+...+
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l   42 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSAL   42 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            57899999999999999999999999999999988765433

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.25  E-value=0.025  Score=58.90  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-CCCH-----------------HhhccCCcEEEEccCCCCc-
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-TKNP-----------------EEITRQADIIISAVGQPNM-  298 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-t~~L-----------------~~~l~~ADIVIsAvG~p~~-  298 (375)
                      ++++||+|+|||.|.+ +.-=+..|++.||.|||+... ++++                 .+.+..+++||.|++.+.+ 
T Consensus         8 ~~l~~~~vlvvGgG~v-A~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (457)
T PRK10637          8 CQLRDRDCLLVGGGDV-AERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN   86 (457)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence            6899999999999995 777677888899999998433 1122                 2457789999999987653 


Q ss_pred             --ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhh---cceeccCCCCccHHHHHHHHHHHH
Q 017184          299 --VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV---ASAITPVPGGVGPMTIAMLLSNTL  365 (375)
Q Consensus       299 --I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~---a~~iTPVPGGVGp~T~amLl~N~v  365 (375)
                        |-.+.-+.| +.+++.-++..           +|+-|..+.+.   .-+|+  -+|-.|..+..|-+++-
T Consensus        87 ~~i~~~a~~~~-~lvN~~d~~~~-----------~~f~~pa~~~~g~l~iais--T~G~sP~~a~~lr~~ie  144 (457)
T PRK10637         87 QRVSEAAEARR-IFCNVVDAPKA-----------ASFIMPSIIDRSPLMVAVS--SGGTSPVLARLLREKLE  144 (457)
T ss_pred             HHHHHHHHHcC-cEEEECCCccc-----------CeEEEeeEEecCCEEEEEE--CCCCCcHHHHHHHHHHH
Confidence              221111223 45555544321           23333332222   22343  37888887776654443

>PLN02858 fructose-bisphosphate aldolase

Probab=95.23  E-value=0.027  Score=66.14  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCccc-----C
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNMVR-----G  301 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~I~-----~  301 (375)
                      .+++|-+||-|.+ |.++|..|++.|.+|++.+++.              .+..+..+++|+||+.+..+.-+.     .
T Consensus         3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence            4678999999986 9999999999999999998862              356688899999999998655221     1


Q ss_pred             ----CCcCCCcEEEEeeec
Q 017184          302 ----SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ----~~vk~gavVIDvgin  316 (375)
                          +.+++|.++||.++.
T Consensus        82 ~g~~~~l~~g~iivd~STi  100 (1378)
T PLN02858         82 EGAAKGLQKGAVILIRSTI  100 (1378)
T ss_pred             hhHHhcCCCcCEEEECCCC
Confidence                235789999999865

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.23  E-value=0.037  Score=51.88  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|++.-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~   41 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA   41 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            5789999999999999999999999999999887653

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.21  E-value=0.039  Score=56.95  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ...++||+++|.|+++-+|+.++..|.++|++|+++.++.
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3567899999999999999999999999999999887653

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.027  Score=51.22  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .++||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            46899999999999999999999999999999988754

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.17  E-value=0.07  Score=55.85  Aligned_cols=123  Identities=22%  Similarity=0.284  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC--HHhhccCCcEEEEccCCCCcccCCCcC-CCcEEEEeeec
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--PEEITRQADIIISAVGQPNMVRGSWIK-PGAVIIDVGIN  316 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~--L~~~l~~ADIVIsAvG~p~~I~~~~vk-~gavVIDvgin  316 (375)
                      +.||+|+|+|-|.. |++++..|.++|+.|++++.+...  ....-...+-|=...|.- ..  +|.. -..+|..=|++
T Consensus         5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~--~~~~~~d~vV~SPGi~   80 (448)
T COG0771           5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD--EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch--hccccCCEEEECCCCC
Confidence            45999999999999 999999999999999999865433  111100111111222221 11  2332 25566666665


Q ss_pred             CCCCC----CCCCCceeecccchhhhhh--hcceeccCCCCccHHHHHHHHHHHHHHHH
Q 017184          317 PVEDA----KSPRGYRLVGDVCYEEACE--VASAITPVPGGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       317 ~~~~~----~~~~g~kl~GDVd~~~v~~--~a~~iTPVPGGVGp~T~amLl~N~v~a~~  369 (375)
                      +.. +    -...|-++.||++.-- ..  .+-++ -|-|==|.-|+.-|+.++++++-
T Consensus        81 ~~~-p~v~~A~~~gi~i~~dieL~~-r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTH-PLVEAAKAAGIEIIGDIELFY-RLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCC-HHHHHHHHcCCcEEeHHHHHH-HhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence            531 1    0123457899987422 11  12221 23466679999999999998864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.08  E-value=0.024  Score=55.05  Aligned_cols=70  Identities=20%  Similarity=0.262  Sum_probs=51.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------------CCHHhhcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------------KNPEEITR  284 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------------~~L~~~l~  284 (375)
                      ++|.|||.|.+ |.++|..|+..|.+|++.+++.                                      .++ +.+.
T Consensus         5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   82 (292)
T PRK07530          5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLA   82 (292)
T ss_pred             CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhc
Confidence            68999999885 9999999999999999987642                                      122 3467


Q ss_pred             CCcEEEEccCCCCc-----cc--CCCcCCCcEEE-Eee
Q 017184          285 QADIIISAVGQPNM-----VR--GSWIKPGAVII-DVG  314 (375)
Q Consensus       285 ~ADIVIsAvG~p~~-----I~--~~~vk~gavVI-Dvg  314 (375)
                      +||+||.+++...-     +.  ...++++++++ +.+
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts  120 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTS  120 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            89999999985321     21  13467787776 443

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.08  E-value=0.34  Score=48.86  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCC--------------CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCC-----
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPED--------------TSEQEVLKHISVFNDDPSVHGILVQLPLPCHID-----  187 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--------------vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~-----  187 (375)
                      .|..---+=..++.++|-++.++.-...              ...|.+.+.++-|+.-  +|+|.+-.|-. +.+     
T Consensus        48 pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~~-g~~~~~~~  124 (335)
T PRK04523         48 PSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRY--VDLIGVRAFPK-FVDWSKDR  124 (335)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCcc-ccccccch
Confidence            3444444567789999999887743321              1236677777777764  78899886522 111     


Q ss_pred             HHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCC-CCCEEEEEcCC------cccHHHHHH
Q 017184          188 EQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDI-KGKRAVVIGRS------NIVGMPAAL  260 (375)
Q Consensus       188 ~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l-~GK~vvVIGrs------~~VGkpla~  260 (375)
                      ....++.+...-+   +-.+|.     +  .. +.||=+.+=+--++++...+ +|++++|++.|      .-|.+.++.
T Consensus       125 ~~~~~~~~a~~s~---vPVINa-----~--~~-~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~  193 (335)
T PRK04523        125 QDQVLNSFAKYST---VPVINM-----E--TI-THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALL  193 (335)
T ss_pred             hHHHHHHHHHhCC---CCEEEC-----C--CC-CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHH
Confidence            1223333322222   344453     2  23 77998888544444443468 89999887532      236888888


Q ss_pred             HHhhCCCeEEEEcC-C-------------------------CCCHHhhccCCcEEEEcc
Q 017184          261 LLQREDATVSIVHS-R-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       261 lL~~~gAtVtv~hs-~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      +|...|++|++|+- .                         +.|+.+.++.||+|.+-.
T Consensus       194 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        194 IATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             HHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence            89999999999875 2                         245678899999998644

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.08  E-value=0.028  Score=52.41  Aligned_cols=38  Identities=32%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|++.+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999999988899999999999999999887653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.06  E-value=0.039  Score=53.92  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------------------CCHHhhccCCcEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------------------KNPEEITRQADII  289 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------------------~~L~~~l~~ADIV  289 (375)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.                                 .++.+.++++|+|
T Consensus         5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            68999999885 9999999999999999987431                                 2344567899999


Q ss_pred             EEccCCC
Q 017184          290 ISAVGQP  296 (375)
Q Consensus       290 IsAvG~p  296 (375)
                      |.++...
T Consensus        84 i~av~~~   90 (311)
T PRK06130         84 IEAVPEK   90 (311)
T ss_pred             EEeccCc
Confidence            9999754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.06  E-value=0.042  Score=50.20  Aligned_cols=50  Identities=30%  Similarity=0.474  Sum_probs=38.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------------------------------CCCHHhhccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------------------------------TKNPEEITRQ  285 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------------------------------t~~L~~~l~~  285 (375)
                      +|.|||+|.+ |+.+|.+++..|..|+++..+                                      +.++++.. +
T Consensus         1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6899999875 999999999999999999754                                      24666666 9


Q ss_pred             CcEEEEccCC
Q 017184          286 ADIIISAVGQ  295 (375)
Q Consensus       286 ADIVIsAvG~  295 (375)
                      ||+||=++.-
T Consensus        79 adlViEai~E   88 (180)
T PF02737_consen   79 ADLVIEAIPE   88 (180)
T ss_dssp             ESEEEE-S-S
T ss_pred             hheehhhccc
Confidence            9999988863

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.05  E-value=0.038  Score=55.94  Aligned_cols=78  Identities=29%  Similarity=0.384  Sum_probs=62.7

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCC-C---Ccc
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQ-P---NMV  299 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~-p---~~I  299 (375)
                      .|.++.||+.-|+|.|.+ |.-+|..+...|..|.-.+--+            -.++|.+.+||.|-.-++- |   +++
T Consensus       140 ~G~el~GKTLgvlG~GrI-GseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~li  218 (406)
T KOG0068|consen  140 LGWELRGKTLGVLGLGRI-GSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLL  218 (406)
T ss_pred             eeeEEeccEEEEeecccc-hHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhcc
Confidence            467899999999999996 9999999999998877776443            2578999999999877662 3   356


Q ss_pred             cCC---CcCCCcEEEEee
Q 017184          300 RGS---WIKPGAVIIDVG  314 (375)
Q Consensus       300 ~~~---~vk~gavVIDvg  314 (375)
                      ..+   ..|+|..||++.
T Consensus       219 n~~tfA~mKkGVriIN~a  236 (406)
T KOG0068|consen  219 NDETFAKMKKGVRIINVA  236 (406)
T ss_pred             CHHHHHHhhCCcEEEEec
Confidence            555   359999999986

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.045  Score=50.28  Aligned_cols=37  Identities=32%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~   40 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL   40 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence            3679999999998888999999999999998887654

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.99  E-value=0.071  Score=53.23  Aligned_cols=56  Identities=27%  Similarity=0.385  Sum_probs=43.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCC--------------------------CCCHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSR--------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~--------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      ++.++|+|||+|. ||..++..|+..| ++|.+.+..                          +.++ +.+++||+||.+
T Consensus         4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            3557999999977 5999999999888 487777532                          2344 578999999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus        82 ag~~~   86 (321)
T PTZ00082         82 AGLTK   86 (321)
T ss_pred             CCCCC
Confidence            98753

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.99  E-value=0.31  Score=51.40  Aligned_cols=79  Identities=18%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             hCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCCCC-----------------------------
Q 017184          236 YGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSRTK-----------------------------  277 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------------  277 (375)
                      ..-++.|++|.|+|.+         +.-...++..|.++|++|.+..-.-.                             
T Consensus       318 l~~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        318 MFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             hhcccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccc
Confidence            3346899999999953         22467899999999999998753310                             


Q ss_pred             -------CHHhhccCCcEEEEccCCCCcccCC------CcCCCcEEEEee
Q 017184          278 -------NPEEITRQADIIISAVGQPNMVRGS------WIKPGAVIIDVG  314 (375)
Q Consensus       278 -------~L~~~l~~ADIVIsAvG~p~~I~~~------~vk~gavVIDvg  314 (375)
                             ++.+.++.||+||.++..+.|-..+      .+++..+|||.-
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~r  447 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGR  447 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECC
Confidence                   2246789999999999988763222      234445899943

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.98  E-value=0.047  Score=56.95  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcC-CCcEEEEeeecC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIK-PGAVIIDVGINP  317 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk-~gavVIDvgin~  317 (375)
                      .+.+|+|+|+|.|++ |++++.+|.++|++|++++++.....+.+.+..|.+.. |.-   ..+++. ...+|+--|+++
T Consensus        12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~---~~~~~~~~d~vV~Spgi~~   86 (473)
T PRK00141         12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADIS-TAE---ASDQLDSFSLVVTSPGWRP   86 (473)
T ss_pred             cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEe-CCC---chhHhcCCCEEEeCCCCCC
Confidence            468899999999997 99999999999999999987533222222222222211 100   011222 234454445543


Q ss_pred             CCCCC----CCCCceeecccchhhhhh------hcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          318 VEDAK----SPRGYRLVGDVCYEEACE------VASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       318 ~~~~~----~~~g~kl~GDVd~~~v~~------~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      .. +.    ...|-++.|++++.....      ....+--|-|=.|.-|+.-|+.++++..
T Consensus        87 ~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         87 DS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             CC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            21 00    012335777776521110      0111223558889999999999998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.98  E-value=0.045  Score=57.34  Aligned_cols=111  Identities=17%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH----------------hhccCCcEEEEccCCCCcccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE----------------EITRQADIIISAVGQPNMVRGSW  303 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~----------------~~l~~ADIVIsAvG~p~~I~~~~  303 (375)
                      +.||+|+|+|.|.+ |++++.+|.+.|++|+++......++                +.++++|+||...|.|.--+  .
T Consensus        10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p--~   86 (488)
T PRK03369         10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAP--V   86 (488)
T ss_pred             cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCH--H
Confidence            36899999999997 99999999999999999986532222                12233455554444331100  0


Q ss_pred             cCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhh------cceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEV------ASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       304 vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~------a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++.               -...|-+++|++++-.....      ...+--|-|-.|.-|+.-|+.++++.+
T Consensus        87 ~~~---------------a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         87 LAA---------------AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHH---------------HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            000               00112356676665210000      001112558899999999999998764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.97  E-value=0.025  Score=52.66  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ...++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            3568999999999999999999999999999999987753

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.97  E-value=0.076  Score=52.20  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=58.2

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHHhhcc---CCc
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPEEITR---QAD  287 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~~~l~---~AD  287 (375)
                      ..+++.+. ..|++|+|+|.|. ||..+++++...|+ .|+++.+.                   ..++.+.++   ..|
T Consensus       160 ~al~~~~~-~~g~~VlV~G~G~-vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        160 HAAHQAGD-LQGKRVFVSGVGP-IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             HHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCC
Confidence            33444443 3799999999865 69999999999998 56665432                   122333332   379


Q ss_pred             EEEEccCCCCcc--cCCCcCCCcEEEEeeec
Q 017184          288 IIISAVGQPNMV--RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       288 IVIsAvG~p~~I--~~~~vk~gavVIDvgin  316 (375)
                      +||.++|.+..+  --+.+++|-.++.+|..
T Consensus       238 ~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        238 VSFEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            999999986543  23568899999999964

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.95  E-value=0.024  Score=59.45  Aligned_cols=72  Identities=25%  Similarity=0.280  Sum_probs=52.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------CHHhh---ccCCcEEEEccCCCCc---
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------NPEEI---TRQADIIISAVGQPNM---  298 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------~L~~~---l~~ADIVIsAvG~p~~---  298 (375)
                      ++.|||.|.+ |.++|..|+++|.+|++.+++..                   ++++.   ++++|+||..+.....   
T Consensus         1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            3789999886 99999999999999999987531                   22222   3468999988776432   


Q ss_pred             -cc--CCCcCCCcEEEEeeec
Q 017184          299 -VR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 -I~--~~~vk~gavVIDvgin  316 (375)
                       +.  ...+++|.+|||.|..
T Consensus        80 Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCCc
Confidence             21  1357889999999953

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.92  E-value=0.021  Score=57.12  Aligned_cols=136  Identities=22%  Similarity=0.349  Sum_probs=82.9

Q ss_pred             HHHHHHHHH----------hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------------
Q 017184          227 KGCIELLHR----------YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------  275 (375)
Q Consensus       227 ~gvi~lL~~----------~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------------  275 (375)
                      .++++.+..          .+....+.+++++|.|-+ |-.++..-...|+-||-..-+                     
T Consensus       139 ~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee  217 (356)
T COG3288         139 IAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEE  217 (356)
T ss_pred             HHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccc
Confidence            567777776          446778889999999775 877766656667766654211                     


Q ss_pred             ---------C--------CCHHhhccCCcEEEEcc---C--CCCcccCCCc---CCCcEEEEeeecCCCC-CCCCCCcee
Q 017184          276 ---------T--------KNPEEITRQADIIISAV---G--QPNMVRGSWI---KPGAVIIDVGINPVED-AKSPRGYRL  329 (375)
Q Consensus       276 ---------t--------~~L~~~l~~ADIVIsAv---G--~p~~I~~~~v---k~gavVIDvgin~~~~-~~~~~g~kl  329 (375)
                               +        +-+.++.++.||||+++   |  .|.+|+.+|+   |||.+|||+....--+ ..+..| +.
T Consensus       218 ~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg-~~  296 (356)
T COG3288         218 SAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPG-KV  296 (356)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCC-eE
Confidence                     0        12457899999999887   3  3557999886   9999999998654210 000011 11


Q ss_pred             ecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHH
Q 017184          330 VGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       330 ~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~  369 (375)
                      +-+   .. .+..| .|-+||-+-.-...+.-+|++...+
T Consensus       297 v~~---~g-V~iig-~~nlp~r~a~~aS~LYa~Nl~~~l~  331 (356)
T COG3288         297 VTK---NG-VKIIG-YTNLPGRLAAQASQLYATNLVNLLK  331 (356)
T ss_pred             EEe---CC-eEEEe-ecCcchhhhhhHHHHHHHHHHHHHH
Confidence            110   00 12233 3456665555555566666665444

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.92  E-value=0.063  Score=50.30  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999887654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.90  E-value=0.037  Score=52.75  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=49.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC----------------CCHHhhccCCcEEEEccCCCC---cccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT----------------KNPEEITRQADIIISAVGQPN---MVRG  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~---~I~~  301 (375)
                      ++.|||.|.+ |.+++..|.+.|.   .+.+++++.                .+..+.++++|+||.++....   ++..
T Consensus         2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            5899999886 9999999988774   356676541                245566789999999998322   2232


Q ss_pred             CCcCCCcEEEEee
Q 017184          302 SWIKPGAVIIDVG  314 (375)
Q Consensus       302 ~~vk~gavVIDvg  314 (375)
                      -++++|.+||++.
T Consensus        81 l~~~~~~~vis~~   93 (258)
T PRK06476         81 LRFRPGQTVISVI   93 (258)
T ss_pred             hccCCCCEEEEEC
Confidence            3467788888865

>PLN02858 fructose-bisphosphate aldolase

Probab=94.90  E-value=0.036  Score=65.20  Aligned_cols=74  Identities=22%  Similarity=0.273  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----c-cC-
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----V-RG-  301 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I-~~-  301 (375)
                      .++|.+||-|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||++++.|.-    + .. 
T Consensus       324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            378999999986 9999999999999999998752              3556788999999999996652    2 11 


Q ss_pred             ---CCcCCCcEEEEeeec
Q 017184          302 ---SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ---~~vk~gavVIDvgin  316 (375)
                         +.+++|.++||.+..
T Consensus       403 g~~~~l~~g~ivVd~STv  420 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTV  420 (1378)
T ss_pred             hHHhcCCCCCEEEECCCC
Confidence               235789999998763

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=94.88  E-value=0.028  Score=52.30  Aligned_cols=37  Identities=22%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~   42 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT   42 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence            5789999999999999999999999999999998876

>PLN02253 xanthoxin dehydrogenase

Probab=94.87  E-value=0.051  Score=51.43  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999989999999999999999888653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.86  E-value=0.026  Score=52.51  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      .|++++|+|||.|++ |..++..|...|. ++++++.
T Consensus        18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~   53 (202)
T TIGR02356        18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD   53 (202)
T ss_pred             HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence            468999999999996 9999999999996 7888753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.86  E-value=0.082  Score=53.26  Aligned_cols=75  Identities=21%  Similarity=0.430  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhC-C-CeEEEEcCC---------------------CCCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRE-D-ATVSIVHSR---------------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~-g-AtVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .-+...|||.|.- ++.-...+... + -+|.|..++                     ..+.++.++.|||||++|....
T Consensus       129 da~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         129 DASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            3467888888775 76665555442 3 367776654                     2467889999999999999654


Q ss_pred             -cccCCCcCCCcEEEEeeec
Q 017184          298 -MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 -~I~~~~vk~gavVIDvgin  316 (375)
                       +++.+|++||+.|.=+|-+
T Consensus       208 Pil~~~~l~~G~hI~aiGad  227 (330)
T COG2423         208 PVLKAEWLKPGTHINAIGAD  227 (330)
T ss_pred             CeecHhhcCCCcEEEecCCC
Confidence             5899999999999999954

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.85  E-value=0.039  Score=50.73  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++++|+++|+|+++-+|+.++..|+++|++|++..|+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999899999999999999999988764

>PRK08339 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.034  Score=52.68  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~   41 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN   41 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            45899999999998888999999999999999998765

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.81  E-value=0.046  Score=50.48  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            5789999999998889999999999999999887654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.038  Score=51.52  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH   42 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4789999999998888999999999999999988765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.80  E-value=0.061  Score=53.01  Aligned_cols=69  Identities=23%  Similarity=0.403  Sum_probs=51.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------------------CCHHhhccCCcEEEEc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------------------KNPEEITRQADIIISA  292 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------------------~~L~~~l~~ADIVIsA  292 (375)
                      .+|.|||.|.+ |.+++..|.+.|.+|+++.+..                              .+. +.++.+|+||.+
T Consensus         3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            47999999885 9999999999999999987531                              112 345789999999


Q ss_pred             cCCCCc---cc--CCCcCCCcEEEEe
Q 017184          293 VGQPNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       293 vG~p~~---I~--~~~vk~gavVIDv  313 (375)
                      +..+..   +.  ...++++.+|+++
T Consensus        81 vk~~~~~~~~~~l~~~~~~~~iii~~  106 (341)
T PRK08229         81 VKSAATADAAAALAGHARPGAVVVSF  106 (341)
T ss_pred             ecCcchHHHHHHHHhhCCCCCEEEEe
Confidence            986543   11  1245778888887

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.033  Score=52.23  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~   41 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD   41 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46899999999999889999999999999999988765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.79  E-value=0.064  Score=51.48  Aligned_cols=53  Identities=26%  Similarity=0.346  Sum_probs=41.8

Q ss_pred             EEEEcCCcccHHHHHHHHhhCC----CeEEEEcCC-------------------------CCCHHhhccCCcEEEEccCC
Q 017184          245 AVVIGRSNIVGMPAALLLQRED----ATVSIVHSR-------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~-------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|||+|+.+|..++..|+..|    .+|++.+.+                         +.|+++.+++||+||.++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799996678999999998888    578877532                         24567889999999999987


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        81 ~~   82 (263)
T cd00650          81 GR   82 (263)
T ss_pred             CC
Confidence            54

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.79  E-value=0.043  Score=53.38  Aligned_cols=72  Identities=25%  Similarity=0.332  Sum_probs=51.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH-------------------------------------HhhccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP-------------------------------------EEITRQ  285 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L-------------------------------------~~~l~~  285 (375)
                      |+|.|||.|.+ |.++|..|+..|.+|++++++...+                                     .+.+++
T Consensus         5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD   83 (295)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence            68999999886 9999999999999999997542111                                     135788


Q ss_pred             CcEEEEccCC-CC----ccc--CCCcCCCcEEE-Eeee
Q 017184          286 ADIIISAVGQ-PN----MVR--GSWIKPGAVII-DVGI  315 (375)
Q Consensus       286 ADIVIsAvG~-p~----~I~--~~~vk~gavVI-Dvgi  315 (375)
                      ||+||.++.. +.    ++.  .+.++++++++ |.+.
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~  121 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS  121 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            9999999873 22    111  13567777765 5543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.76  E-value=0.041  Score=52.10  Aligned_cols=52  Identities=25%  Similarity=0.423  Sum_probs=42.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------CHHhh-ccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------NPEEI-TRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------~L~~~-l~~ADIVIsAvG~  295 (375)
                      ++++|+|.|.. |.++|..|..+|.+|++..+...                       -|++. +.+||++|.++|.
T Consensus         1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57999999995 99999999999999999865421                       13343 7889999999985

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.75  E-value=0.035  Score=56.83  Aligned_cols=76  Identities=16%  Similarity=0.277  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCC---------------C------CHH-hhccCCcEEEEccCCC-
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRT---------------K------NPE-EITRQADIIISAVGQP-  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t---------------~------~L~-~~l~~ADIVIsAvG~p-  296 (375)
                      ..++|.|+|+++.+|+-+..+|.++ +.+|+...++.               .      +++ +.++++|+||.|.|.- 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~  116 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT  116 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence            5579999999999999999999988 67887765431               0      111 1247799999999852 


Q ss_pred             --CcccCCCcCCCcEEEEeeecCC
Q 017184          297 --NMVRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       297 --~~I~~~~vk~gavVIDvgin~~  318 (375)
                        ++++. + +.|..|||++-...
T Consensus       117 s~~i~~~-~-~~g~~VIDlSs~fR  138 (381)
T PLN02968        117 TQEIIKA-L-PKDLKIVDLSADFR  138 (381)
T ss_pred             HHHHHHH-H-hCCCEEEEcCchhc
Confidence              23443 3 67899999996654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=94.72  E-value=0.042  Score=51.62  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS   38 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999888999999999999999988765

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.72  E-value=0.098  Score=50.04  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC-----------------CCH----H
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT-----------------KNP----E  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t-----------------~~L----~  280 (375)
                      +|....++..+++.+. ..|++|+|+|.|. +|..+++++...|++ |+++.+..                 .+.    .
T Consensus       103 ~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~  180 (280)
T TIGR03366       103 GCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQG  180 (280)
T ss_pred             hhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHH
Confidence            3433444455555544 3899999999976 699999999899986 77664321                 111    1


Q ss_pred             hhc--cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          281 EIT--RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~l--~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +.+  +.+|++|-++|.+..+.  -+.++++..++.+|..
T Consensus       181 ~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       181 GLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence            112  34899999999775432  3577888889999953

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.70  E-value=0.054  Score=50.63  Aligned_cols=38  Identities=29%  Similarity=0.429  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999888654

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=94.70  E-value=0.1  Score=53.64  Aligned_cols=76  Identities=22%  Similarity=0.370  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHHh---CCCCCCCEEEEEcCC----------------cccHHHHHHHHhhCCCeEEEEcCCC-------
Q 017184          223 PCTPKGCIELLHRY---GFDIKGKRAVVIGRS----------------NIVGMPAALLLQREDATVSIVHSRT-------  276 (375)
Q Consensus       223 PcT~~gvi~lL~~~---~i~l~GK~vvVIGrs----------------~~VGkpla~lL~~~gAtVtv~hs~t-------  276 (375)
                      ++++..++..+.+.   +-+++||+|+|-|.+                |-+|.++|..|..+||+|+++++..       
T Consensus       163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~  242 (390)
T TIGR00521       163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG  242 (390)
T ss_pred             CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence            66777776666643   246999999999873                3469999999999999999987542       


Q ss_pred             ---------CCH-H----hhccCCcEEEEccCCCCc
Q 017184          277 ---------KNP-E----EITRQADIIISAVGQPNM  298 (375)
Q Consensus       277 ---------~~L-~----~~l~~ADIVIsAvG~p~~  298 (375)
                               .++ +    +...+.|++|.+++...+
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~  278 (390)
T TIGR00521       243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADF  278 (390)
T ss_pred             cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccc
Confidence                     123 2    233568999999997655

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.033  Score=52.02  Aligned_cols=37  Identities=30%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999988764

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.68  E-value=0.14  Score=50.98  Aligned_cols=139  Identities=21%  Similarity=0.280  Sum_probs=92.5

Q ss_pred             HHHHHHHHcCCeEEEEeC-----CCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccch
Q 017184          134 NKKKACQSVGINSFEVHL-----PEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLN  208 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l-----~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N  208 (375)
                      +=.-++..+|-+..++.=     ...-+-+|-...+.++     +|||++--.  .|    ..++.+.-.-.|   -..|
T Consensus        61 SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~-----~D~I~~R~~--~~----~~ve~lA~~s~V---PViN  126 (310)
T COG0078          61 SFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRM-----VDAIMIRGF--SH----ETLEELAKYSGV---PVIN  126 (310)
T ss_pred             hHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhh-----hheEEEecc--cH----HHHHHHHHhCCC---ceEc
Confidence            334567889999877652     1111223444444443     889988644  22    222323222122   2223


Q ss_pred             hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------
Q 017184          209 IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------  275 (375)
Q Consensus       209 ~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------  275 (375)
                             +.++.+.||-..|=+--++++.-.++|++++=+|-|+.|+..+....+..|.+|+++.-+             
T Consensus       127 -------gLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~  199 (310)
T COG0078         127 -------GLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAK  199 (310)
T ss_pred             -------ccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence                   235678899999965555555555999999999999999999988888899999998532             


Q ss_pred             ------------CCCHHhhccCCcEEEEcc
Q 017184          276 ------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 ------------t~~L~~~l~~ADIVIsAv  293 (375)
                                  |.|..+.++.||+|.+-+
T Consensus       200 ~~a~~~g~~i~~t~d~~eAv~gADvvyTDv  229 (310)
T COG0078         200 ENAKESGGKITLTEDPEEAVKGADVVYTDV  229 (310)
T ss_pred             HHHHhcCCeEEEecCHHHHhCCCCEEEecC
Confidence                        458889999999999655

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.67  E-value=0.089  Score=54.81  Aligned_cols=119  Identities=15%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCc-CCCcEEEEeeecCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWI-KPGAVIIDVGINPVE  319 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~v-k~gavVIDvgin~~~  319 (375)
                      .||+|+|+|.|.. |++++.+|. +|++|++.+.+.....+.-+.-+..+  .|. +  +.+.+ ....+|+-=|+++..
T Consensus         5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~~   77 (454)
T PRK01368          5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLTH   77 (454)
T ss_pred             CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCCC
Confidence            5899999999998 999999998 59999999865433221100001111  111 0  01111 223455555555421


Q ss_pred             CCC----CCCCceeecccchhh-hhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          320 DAK----SPRGYRLVGDVCYEE-ACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       320 ~~~----~~~g~kl~GDVd~~~-v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                       +.    ...|-++++++++-. ..+. ..+--|-|--|.-|+.-|+.++++.+
T Consensus        78 -p~~~~a~~~gi~v~~e~el~~~~~~~-~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         78 -EIVKIAKNFNIPITSDIDLLFEKSKN-LKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             -HHHHHHHHCCCceecHHHHHHHHhcC-CCEEEEECCCcHHHHHHHHHHHHHhc
Confidence             10    012336888887631 1111 11223568899999999999998764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.66  E-value=0.039  Score=51.51  Aligned_cols=39  Identities=33%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||+++|.|+++.+|..++..|+++|++|+++.++
T Consensus         7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~   45 (259)
T PRK08213          7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK   45 (259)
T ss_pred             hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            345789999999999999999999999999999998765

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.65  E-value=0.027  Score=53.12  Aligned_cols=77  Identities=21%  Similarity=0.409  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC------------------------------------------
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR------------------------------------------  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~------------------------------------------  275 (375)
                      .|++++|+|+|.|++ |..++..|...|. ++++++..                                          
T Consensus        18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            468899999999996 9999999999996 77777321                                          


Q ss_pred             -----CCCHHhhccCCcEEEEccCCCCc---ccCCCcCCCcEEEEeeec
Q 017184          276 -----TKNPEEITRQADIIISAVGQPNM---VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       276 -----t~~L~~~l~~ADIVIsAvG~p~~---I~~~~vk~gavVIDvgin  316 (375)
                           ..++.+.++++|+||.++..+..   +..-..+.+.-+|+.|+.
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~  145 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVL  145 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence                 01234577889999999886542   332223344555666543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06172 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.034  Score=51.67  Aligned_cols=38  Identities=32%  Similarity=0.446  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.+..|+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~   41 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA   41 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999999999999999999999999887753

>PRK05717 oxidoreductase; Validated

Probab=94.64  E-value=0.039  Score=51.46  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=34.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ...++||+++|.|.++-+|+.++..|+++|++|+++.+.
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~   43 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD   43 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence            467899999999999889999999999999999988543

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.63  E-value=0.08  Score=48.89  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            45789999999999888999999999999999888654

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.62  E-value=0.053  Score=50.52  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++++||+++|+|+++-+|+.++..|+++|+.|+++.+.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~   40 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS   40 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence            467899999999999989999999999999998887654

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.61  E-value=0.042  Score=51.71  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999988889999999999999999987653

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.59  E-value=0.62  Score=48.29  Aligned_cols=160  Identities=21%  Similarity=0.280  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCC---C---CCHHHHHhhCCcccccCccc
Q 017184          132 VRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPC---H---IDEQSILNAVSMEKDVDGFH  205 (375)
Q Consensus       132 v~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~---~---i~~~~i~~~I~p~KDVDGl~  205 (375)
                      ++--...|+++||+              +.+.|+..|.-|.   +++.+|=|.   |   +|.-.+ -.-+++..... .
T Consensus       229 aNElali~~~~GId--------------vwevIeaAnt~P~---~~~~~PGpGvGGHCIpvDP~fl-~~ka~~yg~~~-r  289 (436)
T COG0677         229 ANELALICNAMGID--------------VWEVIEAANTKPR---VNIFYPGPGVGGHCIPVDPYFL-TWKAPEYGLPA-R  289 (436)
T ss_pred             HHHHHHHHHHhCCc--------------HHHHHHHhccCCc---eeecCCCCCCCCcccccCchhe-eecccccCCch-H
Confidence            44456678888877              4568888998886   778888664   1   222211 11222221110 0


Q ss_pred             cchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC-
Q 017184          206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR-  275 (375)
Q Consensus       206 ~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~-  275 (375)
                      ..-+.+.. ++..+.|   ...-+.+.|.+.+..++|.+|+|+|-.         +.=..-+..+|.+.|++|.++.-+ 
T Consensus       290 lI~tAreI-N~~mP~~---Vv~~~~~al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v  365 (436)
T COG0677         290 LIRTAREI-NDSMPRH---VVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYV  365 (436)
T ss_pred             HHHHHHHH-hccCCHH---HHHHHHHHHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCC
Confidence            11122222 1112222   123345566689999999999999942         112456788899999999988533 


Q ss_pred             ------------C-CCHHhhccCCcEEEEccCCCCc--ccCCCcC-CCcEEEEee
Q 017184          276 ------------T-KNPEEITRQADIIISAVGQPNM--VRGSWIK-PGAVIIDVG  314 (375)
Q Consensus       276 ------------t-~~L~~~l~~ADIVIsAvG~p~~--I~~~~vk-~gavVIDvg  314 (375)
                                  + ..+++.++.+|+||.++-...|  ++.+.+. ...+|||.-
T Consensus       366 ~~~~~~~~~~~~~~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~~~vivDtr  420 (436)
T COG0677         366 KELPTREDGEGVTLAILEEALKDADAVVIATDHSEFKEIDYEAIGKEAKVIVDTR  420 (436)
T ss_pred             CcchhhhhccccchhhHHHHhccCCEEEEEeccHHhhcCCHHHhccCCcEEEECc
Confidence                        2 4577899999999999998877  7777664 466889853

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.57  E-value=0.077  Score=49.84  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -+.++|+++|+|+++-+|+.++..|+++|++|+...|+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~   50 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD   50 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence            34578999999998888999999999999998876543

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.098  Score=47.99  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            4689999999998889999999999999998877543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.50  E-value=0.076  Score=52.16  Aligned_cols=53  Identities=15%  Similarity=0.260  Sum_probs=43.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------------CCHHhhcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------------KNPEEITR  284 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------------~~L~~~l~  284 (375)
                      ++|.|||.|. +|.+++..|++.|.+|++++++.                                      .++.+.++
T Consensus         3 ~~V~VIG~G~-mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGL-IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccH-HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4799999877 59999999999999999997642                                      24456678


Q ss_pred             CCcEEEEccCCC
Q 017184          285 QADIIISAVGQP  296 (375)
Q Consensus       285 ~ADIVIsAvG~p  296 (375)
                      ++|+||.+++..
T Consensus        82 ~ad~Vi~avpe~   93 (308)
T PRK06129         82 DADYVQESAPEN   93 (308)
T ss_pred             CCCEEEECCcCC
Confidence            999999998754

>PRK06182 short chain dehydrogenase; Validated

Probab=94.49  E-value=0.065  Score=50.62  Aligned_cols=35  Identities=31%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            58999999998888999999999999999988765

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.45  E-value=0.051  Score=50.69  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++||+++|+|+++-+|+.++..|+++|++|+++.++.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~   41 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP   41 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            7899999999988899999999999999999887653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.45  E-value=0.072  Score=48.78  Aligned_cols=37  Identities=35%  Similarity=0.531  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+++|.|+++-+|+.++..|+++|+.|++..++
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            5689999999998889999999999999988776544

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.047  Score=51.28  Aligned_cols=35  Identities=29%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999999999999988765

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.44  E-value=0.1  Score=51.66  Aligned_cols=53  Identities=28%  Similarity=0.465  Sum_probs=41.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|.|||.|. ||..+|..|+.+|. +|++++..                          +.++++ +++||+||.++|.
T Consensus         2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            4799999977 59999999998874 78887642                          234444 7999999999996


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        80 p~   81 (305)
T TIGR01763        80 PR   81 (305)
T ss_pred             CC
Confidence            53

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.38  E-value=0.09  Score=53.87  Aligned_cols=71  Identities=24%  Similarity=0.336  Sum_probs=51.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------CCHHhhccCCcEEEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------~~L~~~l~~ADIVIs  291 (375)
                      +|.|||.|.+ |.|+|.+|+ .|.+|+.++++.                                .+..+..++||+||.
T Consensus         2 kI~VIGlGyv-Gl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGYV-GLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             EEEEECCCHH-HHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            6899999884 999998777 489999997541                                123445689999999


Q ss_pred             ccCCCC----------ccc------CCCcCCCcEEEEeeecC
Q 017184          292 AVGQPN----------MVR------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       292 AvG~p~----------~I~------~~~vk~gavVIDvgin~  317 (375)
                      +++.|-          .+.      .. +++|.+||+-.+-+
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~  120 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP  120 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence            999761          111      12 47788888766544

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.38  E-value=0.059  Score=52.34  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|.|||.|.+ |.+++..|++.|..|++++++
T Consensus         4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            68999999885 999999999999999998754

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.38  E-value=0.079  Score=52.07  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCCC-------------------------CHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRTK-------------------------NPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t~-------------------------~L~~~l~~ADIVIsA  292 (375)
                      ++||+++|.|+++.+|+.++..|+++|  ++|+++.+...                         ++.+.+++.|+||..
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            579999999999999999999999886  68887754321                         123445667888877


Q ss_pred             cCC
Q 017184          293 VGQ  295 (375)
Q Consensus       293 vG~  295 (375)
                      +|.
T Consensus        82 Ag~   84 (324)
T TIGR03589        82 AAL   84 (324)
T ss_pred             ccc
Confidence            764

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.37  E-value=0.12  Score=50.07  Aligned_cols=36  Identities=25%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -+||+|+|.|+++.+|+.++..|+++|.+|+.+.|+
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD   38 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999999999999999999999999866443

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=94.33  E-value=0.047  Score=54.05  Aligned_cols=58  Identities=29%  Similarity=0.509  Sum_probs=43.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE----------------cCCC----------CCHHhhccCCcEEEEc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV----------------HSRT----------KNPEEITRQADIIISA  292 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~----------------hs~t----------~~L~~~l~~ADIVIsA  292 (375)
                      .-.+.+|.|+|+++-+|+|++++|. .+--|+-.                |-.|          +.|++.++.||+||-+
T Consensus        25 ~~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP  103 (345)
T KOG1494|consen   25 SQRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP  103 (345)
T ss_pred             ccCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence            3467899999999989999998765 44333332                2222          4689999999999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus       104 AGVPR  108 (345)
T KOG1494|consen  104 AGVPR  108 (345)
T ss_pred             CCCCC
Confidence            99654

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.07  Score=49.54  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+++|+|+++.+|+.++..|+++|++|+++.++
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~   44 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS   44 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999888764

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.059  Score=50.38  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~   40 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD   40 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999998888999999999999999998765

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.31  E-value=0.093  Score=48.35  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~   35 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGE   35 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999999987753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.31  E-value=0.045  Score=54.78  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC---------------CCHH-hhccCCcEEEEccCCCC--ccc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT---------------KNPE-EITRQADIIISAVGQPN--MVR  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t---------------~~L~-~~l~~ADIVIsAvG~p~--~I~  300 (375)
                      +++|.|+|+++.+|+-+..+|.+++.   ++....+..               .++. ..+..+|+||.|+|.-.  -+-
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence            46899999999999999999998764   344443321               0111 22468999999997531  122


Q ss_pred             CCCcCCCcEEEEeeecC
Q 017184          301 GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~~~vk~gavVIDvgin~  317 (375)
                      +..++.|++|||.+-.+
T Consensus        81 ~~~~~~G~~VIDlS~~~   97 (334)
T PRK14874         81 PKAAAAGAVVIDNSSAF   97 (334)
T ss_pred             HHHHhCCCEEEECCchh
Confidence            23456789999998654

>PRK05872 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.043  Score=52.98  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|.++|++|+++.++.
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE   43 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999988899999999999999999887653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.29  E-value=0.048  Score=51.25  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ..+++||+++|.|.++-+|+.++..|+.+|++|.+..+..
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~   44 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ   44 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4578999999999999999999999999999998886653

>PRK09242 tropinone reductase; Provisional

Probab=94.29  E-value=0.042  Score=51.22  Aligned_cols=38  Identities=26%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            46789999999998888999999999999999988654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.28  E-value=0.079  Score=49.40  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      -.|+.++|+|+|.|+. |..++..|.+.|. ++++++.
T Consensus        17 ~~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   53 (200)
T TIGR02354        17 QKLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF   53 (200)
T ss_pred             HHHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence            3568899999999996 9999999999997 7888853

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07890 short chain dehydrogenase; Provisional

Probab=94.28  E-value=0.056  Score=50.11  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~   38 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART   38 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            578999999999999999999999999999888654

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.28  E-value=0.12  Score=50.59  Aligned_cols=53  Identities=28%  Similarity=0.424  Sum_probs=41.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|.|||+|. ||..++..|+..|. +|.+++..                          +.+. +.+++||+||.++|.
T Consensus         3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            5899999966 59999999998764 88888643                          1234 458999999999987


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        81 p~   82 (307)
T PRK06223         81 PR   82 (307)
T ss_pred             CC
Confidence            64

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.071  Score=49.16  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|.++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            47899999999999999999999999999999887764

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.062  Score=49.31  Aligned_cols=39  Identities=31%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~   43 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA   43 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999999988889999999999999999887753

>PRK09291 short chain dehydrogenase; Provisional

Probab=94.22  E-value=0.075  Score=49.23  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6889999999999999999999999999887664

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.22  E-value=0.064  Score=58.70  Aligned_cols=73  Identities=32%  Similarity=0.373  Sum_probs=55.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCCc---cc-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------KNPEEITRQADIIISAVGQPNM---VR-  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~~---I~-  300 (375)
                      ++|.|||.|.+ |..++..|.+.|  ..|++++++.                .++.+.+.++|+||.+++...+   +. 
T Consensus         4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~   82 (735)
T PRK14806          4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD   82 (735)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            68999999885 999999999888  4788887652                2455668899999999984321   21 


Q ss_pred             -CCCcCCCcEEEEeeec
Q 017184          301 -GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 -~~~vk~gavVIDvgin  316 (375)
                       ...++++.+|+|++..
T Consensus        83 l~~~~~~~~ii~d~~sv   99 (735)
T PRK14806         83 LKPLLSEHAIVTDVGST   99 (735)
T ss_pred             HHHhcCCCcEEEEcCCC
Confidence             1356788999999853

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.20  E-value=0.12  Score=51.92  Aligned_cols=72  Identities=21%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------------CCCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------------TKNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------------t~~L~~~l~~ADI  288 (375)
                      |+|.|||.|-+ |..+|..++..|.+|++.+..                                  +.++++.+.+||+
T Consensus         8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999875 999999999999999998643                                  2356678899999


Q ss_pred             EEEccCCCCcccC-------CCcCCCcEEEEeeec
Q 017184          289 IISAVGQPNMVRG-------SWIKPGAVIIDVGIN  316 (375)
Q Consensus       289 VIsAvG~p~~I~~-------~~vk~gavVIDvgin  316 (375)
                      ||-++...--++.       +..++++ ||+--++
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS  120 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDA-IIASSTS  120 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC
Confidence            9999874221222       2346665 5554433

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.20  E-value=0.065  Score=51.35  Aligned_cols=34  Identities=18%  Similarity=0.464  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      .+++++|+|+|.|++ |.+++..|...|. ++++++
T Consensus        21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD   55 (240)
T TIGR02355        21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLD   55 (240)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            468899999999996 9999999999995 788874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09186 flagellin modification protein A; Provisional

Probab=94.18  E-value=0.055  Score=50.12  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~   37 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID   37 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            579999999999889999999999999999888664

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.18  E-value=0.13  Score=51.17  Aligned_cols=93  Identities=22%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------HHh
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------PEE  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L~~  281 (375)
                      +|........+...+....|.+++|.|.|. +|..+++++...|+.|+++.+....                     +.+
T Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~  240 (357)
T PLN02514        162 LCAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE  240 (357)
T ss_pred             hhhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHH
Confidence            344344445555555555799999999866 6999999999999987665432111                     122


Q ss_pred             hccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          282 ITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .+...|++|.++|.+..+.  -+.++++..++.+|..
T Consensus       241 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             hcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence            2345799999998654332  2567888888889864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.17  E-value=0.12  Score=48.42  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||.++|.|.++-+|+.++..|+++|++|..+++
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999988999999999999999887654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.16  E-value=0.11  Score=51.19  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999998888999999999999999887643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08264 short chain dehydrogenase; Validated

Probab=94.13  E-value=0.071  Score=48.90  Aligned_cols=38  Identities=29%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      ++.+|+++|+|+++-+|+.++..|+++|+ +|+++.|..
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            46889999999988899999999999999 999888754

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.13  E-value=0.078  Score=53.36  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      -.|++++|+|||.|+. |.+++..|.+.|. ++++++.
T Consensus        20 ~~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (338)
T PRK12475         20 RKIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR   56 (338)
T ss_pred             HhhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence            4578999999999995 9999999999996 7887754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.12  E-value=0.12  Score=54.00  Aligned_cols=122  Identities=19%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-CHHh--hccCCcEEEEccCCCCcccCCCc-CCCcEEEEeee
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-NPEE--ITRQADIIISAVGQPNMVRGSWI-KPGAVIIDVGI  315 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-~L~~--~l~~ADIVIsAvG~p~~I~~~~v-k~gavVIDvgi  315 (375)
                      ++||+|+|+|.|.. |++++.+|.++|+.|++...+.. +..+  .+++ ++.....+..    .+.+ ....+|+--|+
T Consensus         6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~----~~~~~~~d~vV~SpgI   79 (468)
T PRK04690          6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS----AQRLAAFDVVVKSPGI   79 (468)
T ss_pred             cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC----hHHccCCCEEEECCCC
Confidence            47999999999998 99999999999999999885432 2221  2333 3322222221    1222 23456666666


Q ss_pred             cCCCCCC----CCCCceeecccch--hhhhh-h--cceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          316 NPVEDAK----SPRGYRLVGDVCY--EEACE-V--ASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       316 n~~~~~~----~~~g~kl~GDVd~--~~v~~-~--a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++.. +.    ...|-++++++++  ....+ .  ...+--|-|-.|.-|+.-|+.++++.+
T Consensus        80 ~~~~-p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         80 SPYR-PEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCC-HHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            6531 10    0123368888875  11111 0  011223568999999999999998764

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.11  E-value=0.11  Score=48.75  Aligned_cols=54  Identities=17%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC---Ce-EEEEcCC----------------CCCHHhhccCCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED---AT-VSIVHSR----------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g---At-Vtv~hs~----------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      +.+++.|||.|.+ |.+++..|.+.+   .+ +++++++                +.+.++.++++|+||.+++.
T Consensus         3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~   76 (245)
T PRK07634          3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP   76 (245)
T ss_pred             CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH
Confidence            4578999999986 999999988775   23 6666543                13456678899999999984

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.081  Score=49.05  Aligned_cols=38  Identities=34%  Similarity=0.522  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|..++..|+++|++|+++.|.
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~   48 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS   48 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998889999999999999999988764

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.09  E-value=0.07  Score=49.23  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|++..|.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999998775

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.07  E-value=0.048  Score=53.30  Aligned_cols=38  Identities=37%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|++.-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            36789999999998889999999999999999988764

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.07  E-value=0.11  Score=54.85  Aligned_cols=53  Identities=23%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~ADI  288 (375)
                      ++|.|||.|.+ |.++|..|++.|..|++++++.                                  .++.+.+++||+
T Consensus         5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            57999999886 9999999999999999986541                                  245567899999


Q ss_pred             EEEccCCC
Q 017184          289 IISAVGQP  296 (375)
Q Consensus       289 VIsAvG~p  296 (375)
                      ||.++...
T Consensus        84 Vieavpe~   91 (495)
T PRK07531         84 IQESVPER   91 (495)
T ss_pred             EEEcCcCC
Confidence            99998754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.06  E-value=0.11  Score=50.75  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------------CCHHhhcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------------KNPEEITR  284 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------------~~L~~~l~  284 (375)
                      ++|.|||.|.+ |.++|..|+..|..|+++++..                                      .++ +.++
T Consensus         6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            48999999875 9999999999999999986541                                      233 4478


Q ss_pred             CCcEEEEccCCCCcccC-------CCc-CCCcEEEEee
Q 017184          285 QADIIISAVGQPNMVRG-------SWI-KPGAVIIDVG  314 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~~-------~~v-k~gavVIDvg  314 (375)
                      +||+||-++..-.-++.       .+. ++++++..--
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            99999999873221221       344 6787776643

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=94.06  E-value=0.21  Score=47.74  Aligned_cols=93  Identities=18%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCH----
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNP----  279 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L----  279 (375)
                      ++.+..++..++...+ -.|.+|+|.|.++.+|..+++++...|++|+++.+..                   .++    
T Consensus       122 ~~~~~ta~~~~~~~~~-~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  200 (324)
T cd08292         122 IAMPLSALMLLDFLGV-KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKV  200 (324)
T ss_pred             cccHHHHHHHHHhhCC-CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHH
Confidence            3334444444544333 3588999999988889999999999999877664321                   112    


Q ss_pred             Hhhc--cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          280 EEIT--RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l--~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                      .+.+  +..|+|+.++|.+..- --+.++++..+|++|..
T Consensus       201 ~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         201 REAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             HHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence            1222  2589999998875321 12456788888998853

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.05  E-value=0.11  Score=50.31  Aligned_cols=89  Identities=17%  Similarity=-0.006  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHhhc---
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEEIT---  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~~l---  283 (375)
                      ...+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+..                    .++.+.+   
T Consensus       124 ~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       124 LTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh
Confidence            33334443333234689999999877789999999999999877654321                    1222221   


Q ss_pred             --cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          284 --RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                        +..|+|+.++|.+.+- --++++++..++.+|.
T Consensus       204 ~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       204 SPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecc
Confidence              2368999888865431 2246788888888885

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.04  E-value=0.12  Score=54.11  Aligned_cols=53  Identities=30%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             ccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcCC
Q 017184          222 IPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR  275 (375)
Q Consensus       222 ~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs~  275 (375)
                      .+.|.+|++    ++|++.+.+++||+|+|=|.|+ ||..++..|.+.||+|+ +++++
T Consensus       213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence            467888865    5566678999999999999998 59999999999999877 77665

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.052  Score=50.37  Aligned_cols=38  Identities=37%  Similarity=0.524  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~   41 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK   41 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999988765

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=94.03  E-value=0.28  Score=49.67  Aligned_cols=85  Identities=24%  Similarity=0.329  Sum_probs=57.7

Q ss_pred             ccCCHHHHHHHHHHhC------CCCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCC------------------C
Q 017184          222 IPCTPKGCIELLHRYG------FDIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSR------------------T  276 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~------i~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~------------------t  276 (375)
                      +|+++.-.++.|-+..      -.-+|+.|+|+|+|+.||..+.+++...| +.|+.+.+.                  +
T Consensus       132 ~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~  211 (347)
T KOG1198|consen  132 LPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKD  211 (347)
T ss_pred             CchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCC
Confidence            4655555555555555      44579999999999999999999999999 565555433                  2


Q ss_pred             CCHHhhccC-----CcEEEEccCCCCc-ccCCCcCC
Q 017184          277 KNPEEITRQ-----ADIIISAVGQPNM-VRGSWIKP  306 (375)
Q Consensus       277 ~~L~~~l~~-----ADIVIsAvG~p~~-I~~~~vk~  306 (375)
                      .|..+.+++     -|+|+-++|.+.+ .....+..
T Consensus       212 ~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~  247 (347)
T KOG1198|consen  212 ENVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLK  247 (347)
T ss_pred             HHHHHHHHhhcCCCccEEEECCCCCccccchhhhcc
Confidence            344455554     7999988887543 33334443

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.02  E-value=0.11  Score=52.24  Aligned_cols=71  Identities=27%  Similarity=0.349  Sum_probs=55.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------CCCHHhhccCCcEEEEccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      ++|.|||+|.- |.++|..|.++|..|++-.++                            |.|+.+.++.||+||.+++
T Consensus         2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999999886 999999999999888886432                            4588899999999999999


Q ss_pred             CCCc---cc--CCCcCCCcEEEEee
Q 017184          295 QPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       295 ~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      .-.+   ++  +..+++++.++-+.
T Consensus        81 s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          81 SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            6432   21  14567777776653

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.02  E-value=0.26  Score=53.43  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .||+|+|||+|-+ |...|..|.++|+.|+++.+.
T Consensus       309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence            5999999999987 999999999999999998644

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.01  E-value=0.055  Score=56.81  Aligned_cols=79  Identities=27%  Similarity=0.372  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhhccCCcEEEEccCCCC--
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEITRQADIIISAVGQPN--  297 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~l~~ADIVIsAvG~p~--  297 (375)
                      .|+||+|+|||.|.. |+.-|..|...|..|++.-|.                   ..++.+.+++||+|+..++-..  
T Consensus        33 ~LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~  111 (487)
T PRK05225         33 YLKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS  111 (487)
T ss_pred             HhCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHH
Confidence            368999999999986 998888888889988855433                   1357788999999999998431  


Q ss_pred             cccC---CCcCCCc-EEEEeeecCC
Q 017184          298 MVRG---SWIKPGA-VIIDVGINPV  318 (375)
Q Consensus       298 ~I~~---~~vk~ga-vVIDvgin~~  318 (375)
                      .+-.   ..+|+|+ +.+-=|+|-.
T Consensus       112 ~v~~~i~p~LK~Ga~L~fsHGFni~  136 (487)
T PRK05225        112 DVVRAVQPLMKQGAALGYSHGFNIV  136 (487)
T ss_pred             HHHHHHHhhCCCCCEEEecCCceee
Confidence            2222   3567876 3444455543

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.01  E-value=0.12  Score=50.13  Aligned_cols=33  Identities=24%  Similarity=0.175  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      .||+++|.|+++.+|+.++..|+++|++|+++.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~   36 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATV   36 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence            489999999998899999999999999987764

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.01  E-value=0.09  Score=53.00  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             HHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhccCCcEEEEccCCCCcc----c--CCCcCCCcE
Q 017184          255 GMPAALLLQREDATVSIVHSRT-------------------KNPEEITRQADIIISAVGQPNMV----R--GSWIKPGAV  309 (375)
Q Consensus       255 Gkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l~~ADIVIsAvG~p~~I----~--~~~vk~gav  309 (375)
                      |.|+|..|++.|.+|++.+++.                   .+..+..+++|+||+.++.++-+    .  .+.+++|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            6777888877788888775431                   24668899999999999976532    2  245788999


Q ss_pred             EEEeeecC
Q 017184          310 IIDVGINP  317 (375)
Q Consensus       310 VIDvgin~  317 (375)
                      |||.++..
T Consensus       112 VID~STIs  119 (341)
T TIGR01724       112 ICNTCTVS  119 (341)
T ss_pred             EEECCCCC
Confidence            99998653

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06196 oxidoreductase; Provisional

Probab=94.00  E-value=0.058  Score=52.47  Aligned_cols=39  Identities=31%  Similarity=0.468  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~   59 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR   59 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            567899999999998889999999999999999988765

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.00  E-value=0.075  Score=49.91  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++||+++|.|++.-+|+.++..|+++|++|+++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3578999999999998999999999999999988754

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.00  E-value=0.1  Score=49.56  Aligned_cols=35  Identities=17%  Similarity=-0.013  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   37 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS   37 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence            47899999999999999999999999999988764

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.99  E-value=0.2  Score=50.92  Aligned_cols=113  Identities=22%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-CCCe---EEEEcCCC----------C-------CHHhhccCCcEEEEccCCCC--
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-EDAT---VSIVHSRT----------K-------NPEEITRQADIIISAVGQPN--  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~gAt---Vtv~hs~t----------~-------~L~~~l~~ADIVIsAvG~p~--  297 (375)
                      .+.+|.|||+++.||+-+..+|.+ .+..   +..+.+..          +       +. +..++.|+++.|+|.--  
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~-~~~~~~Divf~a~~~~~s~   82 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKI-NSFEGVDIAFFSAGGEVSR   82 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCH-HHhcCCCEEEECCChHHHH
Confidence            456899999999999999999994 5555   54444331          1       22 23478999999997421  


Q ss_pred             cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHH
Q 017184          298 MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLL  361 (375)
Q Consensus       298 ~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl  361 (375)
                      -+-+...+.|.+|||.+-.+.-++.-+   =.+-.|..+.+.+..+ +-..||   -.|++|++
T Consensus        83 ~~~~~~~~~G~~VID~Ss~fR~~~~vp---lvvPEvN~e~i~~~~~-iIanPn---C~tt~~~l  139 (347)
T PRK06728         83 QFVNQAVSSGAIVIDNTSEYRMAHDVP---LVVPEVNAHTLKEHKG-IIAVPN---CSALQMVT  139 (347)
T ss_pred             HHHHHHHHCCCEEEECchhhcCCCCCC---eEeCCcCHHHHhccCC-EEECCC---CHHHHHHH
Confidence            122233467999999986654332111   2344555455444224 334665   55666663

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.96  E-value=0.058  Score=50.20  Aligned_cols=37  Identities=38%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|++..++
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~   39 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR   39 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999889999999999999999888764

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=93.96  E-value=0.053  Score=51.27  Aligned_cols=38  Identities=37%  Similarity=0.553  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|++..++
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~   43 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN   43 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999998888999999999999999988765

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.95  E-value=0.12  Score=53.33  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+|.|+|-|+. |+++|.+|.++|++|++++..
T Consensus         7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence            67999999999998 999999999999999999865

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.95  E-value=0.13  Score=50.95  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCCC-------CH----------------HhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRTK-------NP----------------EEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t~-------~L----------------~~~l~~ADIVIsAvG~p  296 (375)
                      +|.|||.|. ||.+++..|+.+|  .+|.+++++..       ++                .+.+++||+||.++|.|
T Consensus         2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            699999976 6999999999998  47888876421       11                24578999999999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.94  E-value=0.15  Score=50.50  Aligned_cols=39  Identities=18%  Similarity=0.108  Sum_probs=34.1

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ...-+++|+|+|.|++|.+|..++..|+++|.+|+.+.+
T Consensus         9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~   47 (348)
T PRK15181          9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN   47 (348)
T ss_pred             hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            345678999999999999999999999999999987754

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.94  E-value=0.15  Score=50.68  Aligned_cols=52  Identities=21%  Similarity=0.413  Sum_probs=40.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC-------------------------CCCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR-------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~-------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      .||.|||+|. ||..++..|+..|.  ++.+++.+                         +.+. +.+++|||||.++|.
T Consensus         4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCC
Confidence            4899999977 59999999988873  57777543                         1233 458999999999996


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      |
T Consensus        82 ~   82 (312)
T cd05293          82 R   82 (312)
T ss_pred             C
Confidence            4

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.93  E-value=0.083  Score=49.43  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999989999999999999999998765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=93.92  E-value=0.058  Score=50.56  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999998888999999999999999988765

>PRK08223 hypothetical protein; Validated

Probab=93.91  E-value=0.11  Score=51.39  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      -.|+.++|+|||.|+. |-+++..|+..|. ++++++
T Consensus        23 ~kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD   58 (287)
T PRK08223         23 QRLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD   58 (287)
T ss_pred             HHHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence            3468899999999996 9999999999996 788874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.89  E-value=0.083  Score=48.77  Aligned_cols=36  Identities=39%  Similarity=0.542  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|.++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~   37 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN   37 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            578999999999999999999999999999888765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.89  E-value=0.067  Score=49.63  Aligned_cols=37  Identities=38%  Similarity=0.513  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~   40 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN   40 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            4679999999999999999999999999999887654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.89  E-value=0.11  Score=50.56  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCC-----------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRT-----------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t-----------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      .++.|||.|.+ |.+++..|.+.|    .+|++++++.                 .+..+.++++|+||.+++.
T Consensus         2 ~~I~iIG~G~m-G~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp   74 (277)
T PRK06928          2 EKIGFIGYGSM-ADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP   74 (277)
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH
Confidence            36899999885 999999999887    5788776532                 2344567889999999884

>PLN02427 UDP-apiose/xylose synthase

Probab=93.88  E-value=0.12  Score=51.65  Aligned_cols=60  Identities=22%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCCC----------------------------CHHhhccCC
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRTK----------------------------NPEEITRQA  286 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t~----------------------------~L~~~l~~A  286 (375)
                      .|-.++.++|+|.|++|.+|+.++..|+++ |.+|+.+.+...                            .+.+.++.+
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            355677789999999999999999999998 588887764321                            134566789


Q ss_pred             cEEEEccCC
Q 017184          287 DIIISAVGQ  295 (375)
Q Consensus       287 DIVIsAvG~  295 (375)
                      |+||..++.
T Consensus        88 d~ViHlAa~   96 (386)
T PLN02427         88 DLTINLAAI   96 (386)
T ss_pred             CEEEEcccc
Confidence            999977763

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.88  E-value=0.069  Score=49.00  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.+|+++|.|+++-+|+.++..|+++|++|++..|+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999888765

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.87  E-value=0.14  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +||+++|.|+++.+|+.++..|+++|.+|+++.+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r   36 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR   36 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence            4799999999888999999999999999887654

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.073  Score=50.17  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|+.|.++.++
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~   38 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD   38 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999999999999999999999888664

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.87  E-value=0.12  Score=51.09  Aligned_cols=77  Identities=29%  Similarity=0.450  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---C------------------CCHH--hhccCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---T------------------KNPE--EITRQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---t------------------~~L~--~~l~~ADIVIsAvG~p  296 (375)
                      ..|++|+|+|.|. +|..+++++...|+.|+++.++   .                  .++.  .....+|+||.++|.+
T Consensus       171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            4799999999865 6999999999999998887652   1                  1111  1123579999999987


Q ss_pred             Cccc--CCCcCCCcEEEEeeecC
Q 017184          297 NMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       297 ~~I~--~~~vk~gavVIDvgin~  317 (375)
                      ..+.  -+.++++..++-+|...
T Consensus       250 ~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         250 PLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             HHHHHHHHHccCCcEEEEEecCC
Confidence            5432  24678888888888643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.87  E-value=0.094  Score=52.82  Aligned_cols=76  Identities=24%  Similarity=0.375  Sum_probs=52.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC-CCeEE-EEcCCC---C--------------------CHHhhccCCcEEEEccCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE-DATVS-IVHSRT---K--------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~-gAtVt-v~hs~t---~--------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .+|.|+|++|.+|+-+..+|.++ +.++. ++.++.   +                    +.++...++|+||.|++...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999999888999999999877 56766 544331   1                    12233457999999998532


Q ss_pred             c--ccCCCcCCCcEEEEeeecCC
Q 017184          298 M--VRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       298 ~--I~~~~vk~gavVIDvgin~~  318 (375)
                      .  +-+...+.|..|||.+-...
T Consensus        81 s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        81 SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HHHHHHHHHhCCCEEEeCChhhh
Confidence            1  22234567899999986643

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08589 short chain dehydrogenase; Validated

Probab=93.86  E-value=0.066  Score=50.82  Aligned_cols=37  Identities=32%  Similarity=0.391  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998888999999999999999988765

>PRK06500 short chain dehydrogenase; Provisional

Probab=93.85  E-value=0.065  Score=49.29  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|++..++
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            679999999999999999999999999999887654

>PRK06194 hypothetical protein; Provisional

Probab=93.85  E-value=0.067  Score=50.72  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3678999999998888999999999999999988764

>PRK05876 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.058  Score=51.64  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3789999999999989999999999999999988754

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.81  E-value=0.19  Score=46.62  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      .++.++|+|+|.|+ +|-.++..|...|. ++++++.
T Consensus        18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~   53 (197)
T cd01492          18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDD   53 (197)
T ss_pred             HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEEC
Confidence            46789999999999 59999999999996 7988853

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.81  E-value=0.17  Score=48.53  Aligned_cols=93  Identities=17%  Similarity=0.020  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhhc
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEIT  283 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~l  283 (375)
                      |+.....+..|.+...--.|.+|+|.|+++.||..+..++...|++|+.+.+.                   ..++.+.+
T Consensus       125 ~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v  204 (329)
T cd08294         125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEAL  204 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            44444455555443333468999999987778999999999999987765432                   12222221


Q ss_pred             -----cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          284 -----RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       284 -----~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                           +..|+|+.++|.+.+- --+.++++..++.+|.
T Consensus       205 ~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         205 KEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence                 2368888888863321 2245677777888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.79  E-value=0.14  Score=51.26  Aligned_cols=52  Identities=29%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCCC--------------------------CCHHhhccCCcEEEEccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSRT--------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      +||+|||+|+ ||.+++++|..++ + ++.+.+...                          .+ .+.++.|||||-++|
T Consensus         1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence            5799999977 5999999998877 4 677775431                          12 577999999998888


Q ss_pred             CC
Q 017184          295 QP  296 (375)
Q Consensus       295 ~p  296 (375)
                      .|
T Consensus        79 ~p   80 (313)
T COG0039          79 VP   80 (313)
T ss_pred             CC
Confidence            55

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.79  E-value=0.31  Score=44.67  Aligned_cols=94  Identities=30%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhh-
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEI-  282 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~-  282 (375)
                      |+....++..++....-..|++++|.|.+. +|..++.++...|++|+.+.+..                   .+..+. 
T Consensus       116 ~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  194 (271)
T cd05188         116 PEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEEL  194 (271)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHH
Confidence            444444555555555445799999999999 89999999999999988775531                   111111 


Q ss_pred             ----ccCCcEEEEccCCCCcc--cCCCcCCCcEEEEeeecC
Q 017184          283 ----TRQADIIISAVGQPNMV--RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       283 ----l~~ADIVIsAvG~p~~I--~~~~vk~gavVIDvgin~  317 (375)
                          -+..|++|.++|.+..+  -.+.++++..++++|...
T Consensus       195 ~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         195 RLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence                24589999888873332  224667788888888543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07576 short chain dehydrogenase; Provisional

Probab=93.76  E-value=0.08  Score=50.00  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998765

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.76  E-value=0.1  Score=48.90  Aligned_cols=37  Identities=32%  Similarity=0.420  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|+|+++-+|+.++..|.++|+.|.++.++
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999998887663

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.74  E-value=0.16  Score=53.12  Aligned_cols=124  Identities=20%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-CHHhhccCC--cEEEEccCCCCcccCCCc-CCCcEEEEeee
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-NPEEITRQA--DIIISAVGQPNMVRGSWI-KPGAVIIDVGI  315 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-~L~~~l~~A--DIVIsAvG~p~~I~~~~v-k~gavVIDvgi  315 (375)
                      +.+|+|.|+|-|+. |+++|.+|.++|+.|++.+.+.. ...+.++..  .+-+. .|.   ..++.+ ....+|+.-|+
T Consensus         5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~-~g~---~~~~~~~~~d~vv~sp~I   79 (498)
T PRK02006          5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFV-GGP---FDPALLDGVDLVALSPGL   79 (498)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEE-eCC---CchhHhcCCCEEEECCCC
Confidence            57899999999997 99999999999999999986532 111223222  11111 110   001112 12456666666


Q ss_pred             cCCC-C--CC----CCCCceeecccchh-hhhhh------cceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          316 NPVE-D--AK----SPRGYRLVGDVCYE-EACEV------ASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       316 n~~~-~--~~----~~~g~kl~GDVd~~-~v~~~------a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++.. +  +.    ...|-++++++++- .+.+.      ...+--|-|=-|.-|+..|+.++++.+
T Consensus        80 ~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~  146 (498)
T PRK02006         80 SPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERA  146 (498)
T ss_pred             CCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            5431 0  00    01133566666541 11110      001112557788999999999998764

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=93.71  E-value=0.18  Score=50.76  Aligned_cols=93  Identities=20%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             cCCHHHHHHHHHHhCCC-CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------HH
Q 017184          223 PCTPKGCIELLHRYGFD-IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------PE  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~-l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L~  280 (375)
                      +|....++..+...+.. -.|++|+|.|.|. +|..+++++...|++|+++.+....                     +.
T Consensus       159 ~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~  237 (375)
T PLN02178        159 LCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMK  237 (375)
T ss_pred             hccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHH
Confidence            44444445555555443 3699999999865 6999999999999987776432111                     11


Q ss_pred             hhccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          281 EITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +.+..+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       238 ~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        238 EAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence            22234799999998764322  2467888888889864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.70  E-value=0.11  Score=47.35  Aligned_cols=38  Identities=37%  Similarity=0.472  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~   39 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE   39 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35689999999999999999999999999999887763

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.69  E-value=0.073  Score=49.64  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.+|+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~   39 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK   39 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence            678999999998889999999999999999988765

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.67  E-value=0.087  Score=48.20  Aligned_cols=38  Identities=37%  Similarity=0.450  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE-cCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV-HSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~-hs~t  276 (375)
                      ++.+|+++|+|+++-+|+.++..|+++|++|++. .++.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4789999999998889999999999999999888 6653

>PRK12743 oxidoreductase; Provisional

Probab=93.66  E-value=0.16  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~   34 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH   34 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            3689999999999999999999999999988754

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.64  E-value=0.089  Score=48.16  Aligned_cols=38  Identities=32%  Similarity=0.464  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|.++-+|..++..|.++|++|++..|+.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999999999999999999887653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.64  E-value=0.11  Score=49.88  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      .|+.++|+|||.|++ |.+++..|...|. ++++++
T Consensus        29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD   63 (245)
T PRK05690         29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD   63 (245)
T ss_pred             HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            568899999999985 9999999999995 788874

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.63  E-value=0.15  Score=46.92  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ++++|+++|.|+++-+|+.++..|+++|++|++..+
T Consensus         3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~   38 (252)
T PRK06077          3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK   38 (252)
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            357899999999999999999999999999876543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.62  E-value=0.098  Score=46.88  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+|+|||.|.. +--++..|++.|.+|++++|+.
T Consensus       164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence            678999999999998 9899999999999999998864

...

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.59  E-value=0.13  Score=50.21  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=41.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVG  294 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG  294 (375)
                      +|+|+|++|.+|+.++..|+++|.+|+...|+..                     ++.+.++.+|+||.+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            7999999999999999999999999998866421                     23456777888887765

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=93.57  E-value=0.088  Score=51.26  Aligned_cols=39  Identities=36%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ..+.||.++|-|++.-+|+++|.+|++.||+|+++.|+.
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~   42 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE   42 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999998899999999999999999998864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.57  E-value=0.096  Score=48.18  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++++|+++|.|+++-+|+.++..|+++|++|++++|+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999988763

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.55  E-value=0.15  Score=48.16  Aligned_cols=53  Identities=19%  Similarity=0.282  Sum_probs=42.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC------HHhhccCC--cEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------PEEITRQA--DIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~------L~~~l~~A--DIVIsAvG~p  296 (375)
                      +++|+|+++.+|+.++..|+++|.+|+++.|...|      +.+.++..  |+||..+|..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCccc
Confidence            48999998889999999999999999998876433      44556655  9999888753

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02602 lactate dehydrogenase

Probab=93.55  E-value=0.19  Score=50.92  Aligned_cols=52  Identities=25%  Similarity=0.423  Sum_probs=40.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-------------------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      +||+|||+|. ||..+|..|+.++.  ++.+++...                         .+ .+.+++|||||.++|.
T Consensus        38 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGN-VGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCEEEECCCC
Confidence            6999999977 59999999988873  577775431                         12 2458999999999997


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      |
T Consensus       116 ~  116 (350)
T PLN02602        116 R  116 (350)
T ss_pred             C
Confidence            5

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.54  E-value=0.2  Score=48.96  Aligned_cols=93  Identities=15%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHHh
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPEE  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~~  281 (375)
                      +|.....+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+..                     .++.+
T Consensus       133 ~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  212 (338)
T cd08295         133 GMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDA  212 (338)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHH
Confidence            444445555565443334699999999977789999999999999877654321                     12222


Q ss_pred             hc-----cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          282 IT-----RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       282 ~l-----~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                      .+     +..|+|+.++|...+- .-++++++..++.+|.
T Consensus       213 ~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         213 ALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             HHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence            11     2468888888753221 2246777777888874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.54  E-value=0.1  Score=49.09  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             CCCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||.++|.|++  .-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999997  335999999999999999988654

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.1  Score=49.14  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|.++-+|+.++..|+.+|++|.++.|+
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~   43 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART   43 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999888765

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.52  E-value=0.089  Score=50.81  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ++|.|||.|.+ |.+++..|++.|.+|++++.
T Consensus         4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~   34 (282)
T PRK05808          4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDI   34 (282)
T ss_pred             cEEEEEccCHH-HHHHHHHHHHCCCceEEEeC
Confidence            57999999885 99999999999999999874

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.51  E-value=0.11  Score=52.02  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC----CCHHhhccCCcEEEEccCCC---CcccCCCcCCCcEEEEee
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT----KNPEEITRQADIIISAVGQP---NMVRGSWIKPGAVIIDVG  314 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t----~~L~~~l~~ADIVIsAvG~p---~~I~~~~vk~gavVIDvg  314 (375)
                      -+|.|+|++|.+|.-+..+|.++. .++.-..++.    .+.++...++|++|.|++.-   .++ +...+.|..|||.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~-~~~~~~g~~VIDlS   80 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAV-SLVDNPNTCIIDAS   80 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHH-HHHHhCCCEEEECC
Confidence            379999999999999999999875 4544443332    24456668899999999742   122 22335689999998


Q ss_pred             ecC
Q 017184          315 INP  317 (375)
Q Consensus       315 in~  317 (375)
                      -.+
T Consensus        81 adf   83 (310)
T TIGR01851        81 TAY   83 (310)
T ss_pred             hHH
Confidence            654

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN00198 anthocyanidin reductase; Provisional

Probab=93.51  E-value=0.2  Score=49.03  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      .++++|+|+|.|+++-+|+.++..|+++|++|+++.
T Consensus         5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~   40 (338)
T PLN00198          5 TPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV   40 (338)
T ss_pred             cCCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence            356799999999999999999999999999987653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.47  E-value=0.14  Score=50.60  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=45.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------------CHHhhccCCcEEE
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------------NPEEITRQADIII  290 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------------~L~~~l~~ADIVI  290 (375)
                      +-+-.+++|+|.|+++.+|+.++..|+++|++|+++.+...                          .+.+.++..|+||
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            34557899999999999999999999999999987654311                          1234456789999


Q ss_pred             EccCCC
Q 017184          291 SAVGQP  296 (375)
Q Consensus       291 sAvG~p  296 (375)
                      ..++..
T Consensus        85 h~A~~~   90 (353)
T PLN02896         85 HVAASM   90 (353)
T ss_pred             ECCccc
Confidence            877753

>cd00704 MDH Malate dehydrogenase

Probab=93.45  E-value=0.18  Score=50.44  Aligned_cols=54  Identities=17%  Similarity=0.356  Sum_probs=40.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-C------eEEEEcCCC--------------------------CCHHhhccCCcEEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-A------TVSIVHSRT--------------------------KNPEEITRQADIII  290 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-A------tVtv~hs~t--------------------------~~L~~~l~~ADIVI  290 (375)
                      +|+|+|+++.||..++..|...+ +      ++.+.+.+.                          .+..+.+++|||||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            79999996667999999998765 2      266654432                          23457889999999


Q ss_pred             EccCCCC
Q 017184          291 SAVGQPN  297 (375)
Q Consensus       291 sAvG~p~  297 (375)
                      .++|.|.
T Consensus        82 itAG~~~   88 (323)
T cd00704          82 LVGAFPR   88 (323)
T ss_pred             EeCCCCC
Confidence            9999754

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.42  E-value=0.13  Score=51.94  Aligned_cols=69  Identities=22%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC--------CeEEEEcC-----C----------------------------CCCHHhh
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED--------ATVSIVHS-----R----------------------------TKNPEEI  282 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g--------AtVtv~hs-----~----------------------------t~~L~~~  282 (375)
                      +|+|||+|.- |.++|..|.++|        .+|++..+     .                            +.|+++.
T Consensus         1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            5899999885 999999999888        78888754     1                            2467888


Q ss_pred             ccCCcEEEEccCCCCc---cc--CCCcCCCcEEEEe
Q 017184          283 TRQADIIISAVGQPNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~---I~--~~~vk~gavVIDv  313 (375)
                      +++||+||.+++.-.+   +.  ..+++++..+|-+
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence            9999999999985332   11  1356777777665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.42  E-value=0.16  Score=52.56  Aligned_cols=74  Identities=19%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------------CHHhhccCCcEEEEcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------------NPEEITRQADIIISAV  293 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------------~L~~~l~~ADIVIsAv  293 (375)
                      .+|.|||-|. ||.|+|..|.. +.+|+.++++..                             ...+.+++||++|.++
T Consensus         7 mkI~vIGlGy-vGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGY-VGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCc-chHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            6799999988 59999999776 689999875421                             1123578999999999


Q ss_pred             CCCC---------ccc------CCCcCCCcEEEEeeecCC
Q 017184          294 GQPN---------MVR------GSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       294 G~p~---------~I~------~~~vk~gavVIDvgin~~  318 (375)
                      |-|.         .+-      ...+++|.+|||-.+-+.
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p  124 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP  124 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            9772         121      134688999999776543

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=93.37  E-value=0.2  Score=42.15  Aligned_cols=74  Identities=23%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhC-CCeEEEE-cCCC---CC---------------HH-hhc--cCCcEEEEccCCCCc--
Q 017184          244 RAVVIGRSNIVGMPAALLLQRE-DATVSIV-HSRT---KN---------------PE-EIT--RQADIIISAVGQPNM--  298 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~-gAtVtv~-hs~t---~~---------------L~-~~l--~~ADIVIsAvG~p~~--  298 (375)
                      ++.|+|.++.+|+-++..|... +.+++.+ .+..   +.               .. +.+  .++|+||.+++....  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            4778997777788888877774 6665555 2211   00               00 112  478999999985432  


Q ss_pred             -cc--CCCcCCCcEEEEeeecC
Q 017184          299 -VR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       299 -I~--~~~vk~gavVIDvgin~  317 (375)
                       +.  ....++|.+|||++...
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCccc
Confidence             11  22357899999999654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06139 short chain dehydrogenase; Provisional

Probab=93.36  E-value=0.067  Score=53.18  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999988889999999999999999987753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.34  E-value=0.082  Score=48.54  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|+|.++-+|..++..|.++|++|+++.+.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~   38 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN   38 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999997778999999999999999888765

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.33  E-value=0.13  Score=47.94  Aligned_cols=39  Identities=33%  Similarity=0.494  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||.++|.|.++-+|+.++..|+++|++|.++.++.
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~   42 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT   42 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            357899999999998899999999999999999887653

>PRK12742 oxidoreductase; Provisional

Probab=93.32  E-value=0.13  Score=47.05  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|++..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            368999999999888899999999999999877643

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.26  E-value=0.15  Score=51.33  Aligned_cols=55  Identities=13%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------C------HHhhccCCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------N------PEEITRQADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~------L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|+|.|+.|-||+.++..|.++|.+|+.+.+...               |      +.+.++++|+||..++.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~   95 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAAD   95 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcccc
Confidence            6899999999999999999999999999988765310               1      22345678999977753

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=93.26  E-value=4.2  Score=39.54  Aligned_cols=88  Identities=11%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             eeeecHH-HHHHHHHHHHHHHHHhHhccCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCCeEEEE
Q 017184           85 KVIDGKA-VAKQIRDEITGEVSRMKDAIGVVP-------------GLAVILVG-DRKDSATYVRNKKKACQSVGINSFEV  149 (375)
Q Consensus        85 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~LaiI~vG-~d~aS~~Yv~~k~k~a~~~GI~~~~~  149 (375)
                      ++|+|+. |+++-|+.+.+.+++|    |.+|             .+++|.-. .++--....+...+.|++.|......
T Consensus        20 rvLn~~~~Vs~~tr~rV~~~a~el----gY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~   95 (343)
T PRK10727         20 RVINNSPKASEASRLAVHSAMESL----SYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG   95 (343)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence            5677764 6677777776666655    4433             44554422 23333344567788999999887654


Q ss_pred             eCCCCCCHHHHHHHHHHhhcCCCccEEEEe
Q 017184          150 HLPEDTSEQEVLKHISVFNDDPSVHGILVQ  179 (375)
Q Consensus       150 ~l~~~vs~~el~~~I~~LN~D~~V~GIlVq  179 (375)
                      ....  +.++..+.++.+.. .+++||++.
T Consensus        96 ~~~~--~~~~~~~~i~~l~~-~~vdgiIi~  122 (343)
T PRK10727         96 NGYH--NEQKERQAIEQLIR-HRCAALVVH  122 (343)
T ss_pred             eCCC--CHHHHHHHHHHHHh-cCCCEEEEe
Confidence            4332  33444566666654 479999996

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.22  E-value=0.15  Score=46.49  Aligned_cols=37  Identities=32%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+++|.|.++-+|+.++..|+++|++|++..++
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~   38 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5688999999999999999999999999999777554

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.21  E-value=0.22  Score=51.18  Aligned_cols=121  Identities=17%  Similarity=0.272  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC-HHhhccC--CcEEEEccCCCCcccCCCc-CCCcEEEEeee
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN-PEEITRQ--ADIIISAVGQPNMVRGSWI-KPGAVIIDVGI  315 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~-L~~~l~~--ADIVIsAvG~p~~I~~~~v-k~gavVIDvgi  315 (375)
                      +.||+++|+|.|++ |+.++.+|.++|+.|++.+..... ..+.+++  .-+.+. .|.   .+.+.+ ....+|+--|+
T Consensus         3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~---~~~~~~~~~d~vv~spgi   77 (445)
T PRK04308          3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGR---LKDALDNGFDILALSPGI   77 (445)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCC---CCHHHHhCCCEEEECCCC
Confidence            57999999999987 999999999999999998754321 1111211  011110 011   000011 22345555555


Q ss_pred             cCCCCCC---CCCCceeecccchh-hhh----hhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          316 NPVEDAK---SPRGYRLVGDVCYE-EAC----EVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       316 n~~~~~~---~~~g~kl~GDVd~~-~v~----~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++....-   ...|-.+.++.++- ...    ...-+   |-|=-|.-|+..|+.++++..
T Consensus        78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIA---ITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEE---EECCCcHHHHHHHHHHHHHHc
Confidence            4421000   01123566666642 111    12233   447788999999999988764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.21  E-value=0.23  Score=48.35  Aligned_cols=76  Identities=17%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCCCCHH-----------h-hccCCcEEEEccCCCCccc--CCCc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRTKNPE-----------E-ITRQADIIISAVGQPNMVR--GSWI  304 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t~~L~-----------~-~l~~ADIVIsAvG~p~~I~--~~~v  304 (375)
                      ..|++++|+|.|. ||..+++++...|++ |.++.++...++           + .-..+|+||-++|.+..+.  -+.+
T Consensus       143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l  221 (308)
T TIGR01202       143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL  221 (308)
T ss_pred             cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence            3688999999876 599999888889997 444543321111           1 1135799999999876543  2678


Q ss_pred             CCCcEEEEeeec
Q 017184          305 KPGAVIIDVGIN  316 (375)
Q Consensus       305 k~gavVIDvgin  316 (375)
                      +++..++-+|..
T Consensus       222 ~~~G~iv~~G~~  233 (308)
T TIGR01202       222 AKGGEIVLAGFY  233 (308)
T ss_pred             hcCcEEEEEeec
Confidence            888888888864

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.19  E-value=0.18  Score=49.65  Aligned_cols=51  Identities=25%  Similarity=0.431  Sum_probs=40.6

Q ss_pred             EEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      +.|||+|. ||.+++..|+..|  .++++++.+.                         .+ .+.+++|||||.++|.|.
T Consensus         1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence            47999988 6999999999888  4788886431                         12 467899999999999753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.16  E-value=0.095  Score=47.93  Aligned_cols=36  Identities=33%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.|++++|+|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~   39 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD   39 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence            568999999998889999999999999999998765

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.15  E-value=0.2  Score=47.09  Aligned_cols=54  Identities=20%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------C------CHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------K------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +|+.|||+++-+|+-++.-+.++|.+||-.-|+.             +      .+.+.+..-|+||+|.|.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            4799999999999999999999999999886652             1      1335677889999998854

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.14  E-value=0.17  Score=51.44  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +...+|++++|+|+++-+|+.++..|+++|.+|+.+.|.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~   93 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE   93 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence            456789999999999999999999999999999888664

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.13  E-value=0.23  Score=48.26  Aligned_cols=74  Identities=20%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------CCHHhhc-----cCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------KNPEEIT-----RQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------~~L~~~l-----~~ADIVIsAvG~  295 (375)
                      |.+|+|.|+++.||..+.+++...|+ .|+.+.++.                    .++.+.+     +..|+|+.++|.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            48999999977789999999999998 787764321                    1222222     247899988886


Q ss_pred             CCcc-cCCCcCCCcEEEEeee
Q 017184          296 PNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       296 p~~I-~~~~vk~gavVIDvgi  315 (375)
                      +.+- .-+.++++..++++|.
T Consensus       235 ~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHHHHHHHHhccCCEEEEEee
Confidence            5431 1245788888888884

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.12  E-value=0.15  Score=48.11  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEEcCC---cccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRS---NIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs---~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|++   + +|+.++..|+++|++|.++.++
T Consensus         6 ~~~~~k~~lItGas~g~G-IG~a~a~~la~~G~~v~l~~r~   45 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQS-IAWGCARAFRALGAELAVTYLN   45 (258)
T ss_pred             cccCCCEEEEECCCCCCc-HHHHHHHHHHHcCCEEEEEeCC
Confidence            45789999999986   5 5999999999999999888665

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=93.11  E-value=0.16  Score=47.03  Aligned_cols=78  Identities=26%  Similarity=0.386  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcC----------------CcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHHhhc
Q 017184          240 IKGKRAVVIGR----------------SNIVGMPAALLLQREDATVSIVHSRTK--------------------NPEEIT  283 (375)
Q Consensus       240 l~GK~vvVIGr----------------s~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~~~l  283 (375)
                      |+||+|+|-+.                ||-.|..+|..+..+||+|+++|..+.                    .+.+.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~   80 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL   80 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence            46888888753                344799999999999999999987631                    134567


Q ss_pred             cCCcEEEEccCCCCccc----CCCcCC---CcEEEEeeecC
Q 017184          284 RQADIIISAVGQPNMVR----GSWIKP---GAVIIDVGINP  317 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~----~~~vk~---gavVIDvgin~  317 (375)
                      +++|++|.++-...|-.    ..-+|+   ....+.+--+|
T Consensus        81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~p  121 (185)
T PF04127_consen   81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTP  121 (185)
T ss_dssp             GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-G
T ss_pred             CcceeEEEecchhheeehhccccccccccCcceEEEEEeCh
Confidence            88999998888766532    244663   35677776555

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK06198 short chain dehydrogenase; Provisional

Probab=93.10  E-value=0.12  Score=48.06  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t  276 (375)
                      .+++|+++|+|+++-+|+.++..|.++|++ |+++.|+.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            368999999999988999999999999998 88887653

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=93.10  E-value=0.12  Score=47.55  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|++..++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            579999999999999999999999999999887554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN02778 3,5-epimerase/4-reductase

Probab=93.08  E-value=0.27  Score=47.93  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=41.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---HHhhcc--CCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---PEEITR--QADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---L~~~l~--~ADIVIsAvG~  295 (375)
                      .++++|.|++|.+|..++..|+++|.+|+.....-.+   +...++  +.|+||.+++.
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            4789999999999999999999999998865443333   233333  68999987764

>PRK06181 short chain dehydrogenase; Provisional

Probab=93.04  E-value=0.16  Score=47.35  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~   34 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARN   34 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999998889999999999999999988765

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=93.04  E-value=0.15  Score=47.48  Aligned_cols=37  Identities=32%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4789999999999989999999999999999988764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.03  E-value=0.16  Score=47.74  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      -.|+.++|+|||.|++ |..++..|.+.|. ++++++.
T Consensus        24 ~~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   60 (212)
T PRK08644         24 EKLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF   60 (212)
T ss_pred             HHHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            3468899999999996 9999999999996 6888753

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.01  E-value=0.14  Score=48.91  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||.++|.|++.  -+|+.+|..|+++|++|+++.++
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            6899999999983  35999999999999999988654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.99  E-value=0.19  Score=47.55  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||.++|.|++  .-+|+.++..|+++|++|+++.+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence            5789999999985  23599999999999999998854

>PRK05875 short chain dehydrogenase; Provisional

Probab=92.99  E-value=0.13  Score=48.38  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999998888999999999999999988664

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.98  E-value=0.096  Score=45.07  Aligned_cols=32  Identities=28%  Similarity=0.522  Sum_probs=27.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      .++|+|+|.|++ |..++..|...|. .+++++.
T Consensus         2 ~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHhCCCceeecCC
Confidence            589999999995 9999999999997 7888853

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.97  E-value=0.23  Score=47.88  Aligned_cols=69  Identities=25%  Similarity=0.355  Sum_probs=48.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      +++|||.|.+ |..++..|.+.|.+|+++.+..                          .+..+....+|+||.++..+.
T Consensus         2 kI~IiG~G~i-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~   80 (305)
T PRK12921          2 RIAVVGAGAV-GGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ   80 (305)
T ss_pred             eEEEECCCHH-HHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence            6899999885 9999999999999999886610                          122334478999999988654


Q ss_pred             c---cc--CCCcCCCcEEEEe
Q 017184          298 M---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       298 ~---I~--~~~vk~gavVIDv  313 (375)
                      +   +.  ..++.++.+||-+
T Consensus        81 ~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         81 LDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             HHHHHHHHHhhcCCCCEEEEe
Confidence            2   11  1245566666655

>PLN02214 cinnamoyl-CoA reductase

Probab=92.95  E-value=0.24  Score=49.03  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++|+|+|.|+++.+|+.++..|+++|..|+.+.|
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r   42 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR   42 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            57899999999988999999999999999877654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.94  E-value=0.17  Score=46.87  Aligned_cols=52  Identities=13%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------------CCHHhhccCCcEEEEccCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      |+|+|+.|.+|++++..|++.+.+|+++.|..                       +.|.+.++.+|.||..++..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            68999988889999999999889999988763                       13556788889998888843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.91  E-value=0.11  Score=52.48  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhC---CCeEEEEcCCC---------------CCHHhhc-cCCcEEEEccCCCC--cc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRE---DATVSIVHSRT---------------KNPEEIT-RQADIIISAVGQPN--MV  299 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~---gAtVtv~hs~t---------------~~L~~~l-~~ADIVIsAvG~p~--~I  299 (375)
                      ++.+|.|||+++.||+-+..+|.++   ..++....+..               .++.+.. .++|+++.|+|.--  -+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~   82 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY   82 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence            5678999999999999999999984   35666665431               1222322 67899999997421  12


Q ss_pred             cCCCcCCCcEEEEeeecC
Q 017184          300 RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~~~~vk~gavVIDvgin~  317 (375)
                      -++..+.|+.|||.+-.+
T Consensus        83 ~~~~~~~g~~VIDlS~~f  100 (336)
T PRK08040         83 AEEATNAGCLVIDSSGLF  100 (336)
T ss_pred             HHHHHHCCCEEEECChHh
Confidence            233456799999998654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.87  E-value=0.15  Score=51.85  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      .+++++|+|+|.|++ |..++..|...|. ++++++.
T Consensus       132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~  167 (376)
T PRK08762        132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH  167 (376)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            357899999999996 9999999999997 7888754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.86  E-value=0.4  Score=46.62  Aligned_cols=92  Identities=25%  Similarity=0.318  Sum_probs=61.5

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC-------------------CC---H
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT-------------------KN---P  279 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t-------------------~~---L  279 (375)
                      +|.....+..+++.++ ..|.+|+|+|.|. +|..+++++...|+. |+++.+..                   .+   +
T Consensus       146 ~~~~~ta~~~l~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~  223 (339)
T cd08239         146 LCGIGTAYHALRRVGV-SGRDTVLVVGAGP-VGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEI  223 (339)
T ss_pred             cchHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHH
Confidence            4443444555555544 3599999999865 699999999999998 87765431                   11   1


Q ss_pred             Hhhcc--CCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          280 EEITR--QADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l~--~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .+.+.  .+|+||.++|.+..+.  -+.++++..++-+|..
T Consensus       224 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         224 RELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            12222  5899999999765432  2467888788888864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.85  E-value=0.17  Score=54.64  Aligned_cols=36  Identities=19%  Similarity=0.065  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn  113 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS  113 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999998888999999999999999987664

>PRK06197 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.091  Score=50.74  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999998887654

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=92.81  E-value=0.39  Score=49.73  Aligned_cols=52  Identities=37%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      -.+.|..|+.    +.+++.+.+|+|++|+|=|.|+ ||+-++..|...||.|+.+.
T Consensus       182 r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GN-Vg~~aa~~l~~~GAkvva~s  237 (411)
T COG0334         182 RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGN-VGQYAAEKLHELGAKVVAVS  237 (411)
T ss_pred             CCcccceehHHHHHHHHHHcCCCcCCCEEEEECccH-HHHHHHHHHHHcCCEEEEEE
Confidence            3478888864    5556678889999999999999 59999999999999988774

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=92.80  E-value=0.12  Score=51.99  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=63.7

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      |+|+|. |.||+.++..|.+.+-  +|++..|+.                         .+|.+.++++|+||+++|...
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            688999 4569999999988763  788887652                         126788999999999998652


Q ss_pred             c--ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCC-CCccHHHHHHHHHHHHHHHH
Q 017184          298 M--VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVP-GGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       298 ~--I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVP-GGVGp~T~amLl~N~v~a~~  369 (375)
                      -  +-...++-|.-.||..+-.          ...-.  +++.++.++. |=++ =|.-|--+.++...+++.+.
T Consensus        80 ~~~v~~~~i~~g~~yvD~~~~~----------~~~~~--l~~~a~~~g~-~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDTSYVT----------EEMLA--LDEEAKEAGV-TALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             HHHHHHHHHHHT-EEEESS-HH----------HHHHH--CHHHHHHTTS-EEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCeeccchhH----------HHHHH--HHHHHHhhCC-EEEeCcccccchHHHHHHHHHHHhh
Confidence            1  2233456688888854300          00111  1222333332 1122 25666667777777776554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.76  E-value=0.23  Score=47.29  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC---CeEEEEcCCC---------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT---------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g---AtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      .++.|||.|.+ |..++..|.+.|   ..|++++++.               .+..+.+.++|+||.++..
T Consensus         3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence            47999999886 999999999887   6788887752               2445567899999998864

>PRK12827 short chain dehydrogenase; Provisional

Probab=92.76  E-value=0.18  Score=46.17  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ++++|+++|.|+++-+|+.++..|+++|++|++..+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            467899999999999999999999999999888543

>PRK08226 short chain dehydrogenase; Provisional

Probab=92.76  E-value=0.17  Score=47.14  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|.++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            3679999999999999999999999999999988765

>PRK05086 malate dehydrogenase; Provisional

Probab=92.75  E-value=0.3  Score=48.52  Aligned_cols=55  Identities=22%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhh-CC--CeEEEEcCC-----------------------CCCHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQR-ED--ATVSIVHSR-----------------------TKNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~-~g--AtVtv~hs~-----------------------t~~L~~~l~~ADIVIsAvG~p  296 (375)
                      +|++|||+++.||..++..|.. .+  .+++++.+.                       ..++.+.++++|+||.++|.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            5899999965579999988744 22  356665321                       124567789999999999975


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      +
T Consensus        81 ~   81 (312)
T PRK05086         81 R   81 (312)
T ss_pred             C
Confidence            4

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=92.74  E-value=0.16  Score=51.28  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC---------------CCH-HhhccCCcEEEEccCCCCc--c
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT---------------KNP-EEITRQADIIISAVGQPNM--V  299 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t---------------~~L-~~~l~~ADIVIsAvG~p~~--I  299 (375)
                      ...+|.|+|+++.+|+-+..+|.+++.   ++....+..               .++ .+.+.++|+||.|+|.-..  +
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~   85 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF   85 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence            467899999999999999999998653   443332221               111 1345789999999975311  1


Q ss_pred             cCCCcCCCcEEEEeeecC
Q 017184          300 RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~~~~vk~gavVIDvgin~  317 (375)
                      -++..+.|+.|||.+-.+
T Consensus        86 ~~~~~~~g~~VIDlS~~f  103 (344)
T PLN02383         86 GPIAVDKGAVVVDNSSAF  103 (344)
T ss_pred             HHHHHhCCCEEEECCchh
Confidence            122346799999998554

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=92.74  E-value=0.54  Score=44.09  Aligned_cols=94  Identities=22%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CC----H
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KN----P  279 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~----L  279 (375)
                      ++-...++..+.+..---.|++++|.|.++.+|..++.++...|++|++..++.                   .+    +
T Consensus       126 ~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  205 (325)
T cd08253         126 GIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRI  205 (325)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHH
Confidence            333344555555433334699999999877789999999999999987764421                   11    1


Q ss_pred             Hhhc--cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          280 EEIT--RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l--~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                      .+.+  +..|+++.++|.... ...++++++..++++|..
T Consensus       206 ~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         206 LAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             HHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence            2222  357888888876543 223566777788888864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK08263 short chain dehydrogenase; Provisional

Probab=92.72  E-value=0.21  Score=47.23  Aligned_cols=35  Identities=14%  Similarity=-0.014  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|.++|.|+++-+|+.++..|+++|+.|+++.++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~   36 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD   36 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999999999999999999999988765

>PRK08643 acetoin reductase; Validated

Probab=92.69  E-value=0.16  Score=47.12  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||.++|+|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7899999999999999999999999999888764

>PLN00106 malate dehydrogenase

Probab=92.68  E-value=0.37  Score=48.39  Aligned_cols=56  Identities=21%  Similarity=0.443  Sum_probs=42.3

Q ss_pred             CCCEEEEEcC-CcccHHHHHHHHhhCCC--eEEEEcC-----------------------CCCCHHhhccCCcEEEEccC
Q 017184          241 KGKRAVVIGR-SNIVGMPAALLLQREDA--TVSIVHS-----------------------RTKNPEEITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGr-s~~VGkpla~lL~~~gA--tVtv~hs-----------------------~t~~L~~~l~~ADIVIsAvG  294 (375)
                      ..+||+|||+ |. ||..++..|..++.  ++.+++.                       .+.++.+.+++||+||.++|
T Consensus        17 ~~~KV~IiGaaG~-VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         17 PGFKVAVLGAAGG-IGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            4579999999 55 69999999986552  5555532                       13456788999999999999


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        96 ~~~   98 (323)
T PLN00106         96 VPR   98 (323)
T ss_pred             CCC
Confidence            653

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.66  E-value=0.18  Score=49.03  Aligned_cols=39  Identities=38%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            467899999999999999999999999999999988653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.66  E-value=0.24  Score=48.55  Aligned_cols=51  Identities=27%  Similarity=0.413  Sum_probs=38.7

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      |.|||+|. ||..++..|+.+|. +|++++..                          +.+. +.+++||+||.++|.|.
T Consensus         1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCC
Confidence            57899966 59999998887764 88887643                          1343 45899999999998663

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK07201 short chain dehydrogenase; Provisional

Probab=92.64  E-value=0.17  Score=53.97  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~  404 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARN  404 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999998888999999999999999998765

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=92.62  E-value=0.19  Score=49.66  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEEcC---CcccHHHHHHHHhhCCCeEEEE
Q 017184          237 GFDIKGKRAVVIGR---SNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       237 ~i~l~GK~vvVIGr---s~~VGkpla~lL~~~gAtVtv~  272 (375)
                      +.+++||.++|-|+   +++ |+.+|..|+++||+|.++
T Consensus         4 ~~~l~gk~alITGa~~s~GI-G~a~A~~la~~Ga~Vv~~   41 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGY-GWAIAKALAAAGAEILVG   41 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcH-HHHHHHHHHHCCCEEEEE
Confidence            46799999999999   565 999999999999999883

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.59  E-value=0.21  Score=49.66  Aligned_cols=53  Identities=21%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-------------------C------CHHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-------------------K------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-------------------~------~L~~~l~~ADIVIsAvG~p  296 (375)
                      ||.|||+|. ||.++|..|+.++.  ++.+.+.+.                   .      +-.+.+++|||||.++|.|
T Consensus         1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            589999977 59999999988773  577665321                   0      1247799999999999975


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        80 ~   80 (307)
T cd05290          80 I   80 (307)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08278 short chain dehydrogenase; Provisional

Probab=92.58  E-value=0.18  Score=47.90  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            4689999999999999999999999999999888764

>PRK06444 prephenate dehydrogenase; Provisional

Probab=92.57  E-value=0.22  Score=46.56  Aligned_cols=58  Identities=16%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCC-CcEEEEeee
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKP-GAVIIDVGI  315 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~-gavVIDvgi  315 (375)
                      +++|||..|-+|+-++..|.+.|..|+            +++||+||.|++.....  +++++ ..+++|+|.
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~~--~~i~~~~~~v~Dv~S   60 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAAL--NYIESYDNNFVEISS   60 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHHH--HHHHHhCCeEEeccc
Confidence            689999955579999999999999886            47899999999853221  12211 137889885

>PRK06914 short chain dehydrogenase; Provisional

Probab=92.57  E-value=0.17  Score=47.70  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|.++|.|+++-+|+.++..|+++|+.|+++.|+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence            57899999999999999999999999999887654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=92.53  E-value=0.19  Score=51.28  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      -.+++++|+|||.|++ |.+++..|...|. ++++++
T Consensus        37 ~~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD   72 (370)
T PRK05600         37 ERLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLID   72 (370)
T ss_pred             HHhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            4568899999999996 9999999999995 888875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.47  E-value=0.37  Score=49.34  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCCC-----------CCHHhhccCCcEE
Q 017184          230 IELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSRT-----------KNPEEITRQADII  289 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~t-----------~~L~~~l~~ADIV  289 (375)
                      ++.+.++-.+++||+|.|+|-+         +.-...++..|.++|++|.+..-..           .++.+.++.||.|
T Consensus       301 ~~~~~~~l~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~  380 (411)
T TIGR03026       301 VEKILDLLGPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADAL  380 (411)
T ss_pred             HHHHHHHhhcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEE
Confidence            3333333246899999999953         2236788999999999999885431           4677889999999


Q ss_pred             EEccCCCCcccCC--CcCC---CcEEEEe
Q 017184          290 ISAVGQPNMVRGS--WIKP---GAVIIDV  313 (375)
Q Consensus       290 IsAvG~p~~I~~~--~vk~---gavVIDv  313 (375)
                      |..+..+.|-..+  .+++   .-+|||.
T Consensus       381 v~~t~~~~~~~~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       381 VILTDHDEFKDLDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             EEecCCHHHhccCHHHHHHhcCCCEEEeC
Confidence            9999998773322  2322   3478883

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK09135 pteridine reductase; Provisional

Probab=92.46  E-value=0.2  Score=45.90  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999999988764

>PRK05993 short chain dehydrogenase; Provisional

Probab=92.44  E-value=0.16  Score=48.31  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~   37 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK   37 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999998888999999999999999998775

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=92.41  E-value=0.18  Score=46.96  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|+|.++-+|+.++..|.++|++|.++.++
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999999999999999999999998877654

>PRK07677 short chain dehydrogenase; Provisional

Probab=92.39  E-value=0.18  Score=46.98  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999888765

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=92.39  E-value=0.24  Score=48.57  Aligned_cols=37  Identities=32%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ...+|+++|-|+|.=+|+.+|..|+++|++|+++.|+
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~   39 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARR   39 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4578999999999989999999999999999999886

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.38  E-value=0.32  Score=49.74  Aligned_cols=105  Identities=20%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH--------------hhccCCcEEEEccCCCCccc--CCCc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE--------------EITRQADIIISAVGQPNMVR--GSWI  304 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~--------------~~l~~ADIVIsAvG~p~~I~--~~~v  304 (375)
                      ..++|+|||-|.+ |+.+|.+|.++|++|+.+..+...+.              ....++|+||...|.+..-+  .+-.
T Consensus         2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~   80 (418)
T PRK00683          2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAI   80 (418)
T ss_pred             CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHH
Confidence            3578999999997 99999999999999999886543211              12356788887777542100  0112


Q ss_pred             CCCcEEEEeeecCCCCCCCCCCceeecccchhhhh-----hhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          305 KPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEAC-----EVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       305 k~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~-----~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      +.|+                   +++.|.++-...     ...-+   |-|=.|.-|+.-|+.++++..
T Consensus        81 ~~g~-------------------~vv~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         81 ASHI-------------------PVVTDIQLAFQTPEFTRYPSLG---ITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             HCCC-------------------cEEEHHHHHHhhhhcCCCCEEE---EECCCChHHHHHHHHHHHHHc
Confidence            3343                   233333321100     01122   458889999999999998764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.36  E-value=0.18  Score=53.44  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|.|||.|.+ |.++|..|++.|..|++.+++
T Consensus         6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999875 999999999999999999765

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.33  E-value=0.35  Score=47.91  Aligned_cols=54  Identities=30%  Similarity=0.496  Sum_probs=41.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC----------------------------CCHHhhccCCcEEEEc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT----------------------------KNPEEITRQADIIISA  292 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t----------------------------~~L~~~l~~ADIVIsA  292 (375)
                      ++|.|+|+++.||..++..|+..|.  +|+.+.+..                            .+ .+.+++|||||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            4799999955579999999998874  477766421                            12 3458999999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus        80 ag~p~   84 (309)
T cd05294          80 AGVPR   84 (309)
T ss_pred             cCCCC
Confidence            99764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.32  E-value=0.19  Score=53.26  Aligned_cols=71  Identities=17%  Similarity=0.286  Sum_probs=51.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------------CCHHhhcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------------KNPEEITR  284 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------------~~L~~~l~  284 (375)
                      ++|.|||.|.+ |.++|..|++.|..|++.+++.                                      .++. .+.
T Consensus         8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~~~   85 (507)
T PRK08268          8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA-DLA   85 (507)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhC
Confidence            68999999875 9999999999999999997652                                      1332 357


Q ss_pred             CCcEEEEccCCCCcccC-------CCcCCCcEE-EEeee
Q 017184          285 QADIIISAVGQPNMVRG-------SWIKPGAVI-IDVGI  315 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~~-------~~vk~gavV-IDvgi  315 (375)
                      +||+||.++....-++.       ...++++++ .|...
T Consensus        86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntSt  124 (507)
T PRK08268         86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSS  124 (507)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            99999999885432322       234677766 35554

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.31  E-value=0.23  Score=45.81  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            367899999999988999999999999999987644

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.31  E-value=0.21  Score=50.51  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVH  273 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~h  273 (375)
                      -.|++++|+|||.|++ |.+++..|...|. ++++++
T Consensus        24 ~~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD   59 (355)
T PRK05597         24 QSLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIID   59 (355)
T ss_pred             HHHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEe
Confidence            3468899999999996 9999999999985 788874

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.30  E-value=0.23  Score=45.82  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999998878999999999999999887664

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.29  E-value=0.13  Score=47.69  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|.++-+|..++..|+++|++|+++.++
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            3689999999999999999999999999999888765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.29  E-value=0.36  Score=48.03  Aligned_cols=75  Identities=23%  Similarity=0.303  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHHh----hcc-CCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPEE----ITR-QADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~~----~l~-~ADIVIsAvG~  295 (375)
                      .|++|+|.|.|. +|..+++++...|+ .|+++.++                   ..++.+    .+. .+|+||.++|.
T Consensus       191 ~g~~VlV~G~G~-vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~  269 (371)
T cd08281         191 PGQSVAVVGLGG-VGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS  269 (371)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC
Confidence            589999999765 69999999989998 57766432                   112222    221 47999999997


Q ss_pred             CCccc--CCCcCCCcEEEEeeec
Q 017184          296 PNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       296 p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +..+.  -+.++++..++-+|..
T Consensus       270 ~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         270 VPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             hHHHHHHHHHHhcCCEEEEEccC
Confidence            65433  2467787778888854

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.28  E-value=0.18  Score=52.46  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+|+|||+|.. |--++..|...|++||+.-|+
T Consensus       171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs  207 (443)
T COG2072         171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS  207 (443)
T ss_pred             cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence            5899999999999998 999999999999999999765

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=92.28  E-value=3  Score=40.04  Aligned_cols=93  Identities=14%  Similarity=0.238  Sum_probs=57.2

Q ss_pred             eeeecHH----HHHHHHHHHHHHHHHhH-------h--ccCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCCeEEEEe
Q 017184           85 KVIDGKA----VAKQIRDEITGEVSRMK-------D--AIGVVPGLAVILVG-DRKDSATYVRNKKKACQSVGINSFEVH  150 (375)
Q Consensus        85 ~ildGk~----la~~i~~~lk~~v~~l~-------~--~~g~~P~LaiI~vG-~d~aS~~Yv~~k~k~a~~~GI~~~~~~  150 (375)
                      ++|+|++    |+++.++.+.+.+++|-       .  +.+....++++.-. +++--....+...+.|++.|.+.....
T Consensus        19 rvLn~~~~~~~Vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~   98 (328)
T PRK11303         19 YVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIAC   98 (328)
T ss_pred             HHHcCCCCCCCcCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe
Confidence            5688875    88888888877777651       0  01223345555432 233334445678889999999987654


Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCccEEEEeC
Q 017184          151 LPEDTSEQEVLKHISVFNDDPSVHGILVQL  180 (375)
Q Consensus       151 l~~~vs~~el~~~I~~LN~D~~V~GIlVql  180 (375)
                      ...  +.+...+.++.+.. .+++||++.-
T Consensus        99 ~~~--~~~~~~~~~~~l~~-~~vdgiIi~~  125 (328)
T PRK11303         99 SDD--QPDNEMRCAEHLLQ-RQVDALIVST  125 (328)
T ss_pred             CCC--CHHHHHHHHHHHHH-cCCCEEEEcC
Confidence            432  23334456666654 3799999853

>PRK07109 short chain dehydrogenase; Provisional

Probab=92.27  E-value=0.13  Score=51.07  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~   41 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG   41 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998889999999999999999998765

>PRK07577 short chain dehydrogenase; Provisional

Probab=92.22  E-value=0.25  Score=45.04  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+++|.|.++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~   36 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS   36 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999999999999999999999999988775

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=92.21  E-value=0.24  Score=46.07  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=29.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+|+++-+|+.++..|+++|++|+++.++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~   33 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRR   33 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            468999998889999999999999999887664

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=92.18  E-value=0.34  Score=48.30  Aligned_cols=93  Identities=25%  Similarity=0.320  Sum_probs=58.0

Q ss_pred             cCCHHHHHHHHHH-hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhh
Q 017184          223 PCTPKGCIELLHR-YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEI  282 (375)
Q Consensus       223 PcT~~gvi~lL~~-~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~  282 (375)
                      |++..-.+.+|.. ++... |.+|+|.|+++-||..+.+++...|++|.+.-++.                   .++.+.
T Consensus       124 ~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~  202 (326)
T COG0604         124 PLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ  202 (326)
T ss_pred             HHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHH
Confidence            3333444445544 33333 99999999888899999999999996544332221                   123333


Q ss_pred             ----c--cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          283 ----T--RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 ----l--~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                          +  +..|+|+-.+|...+- .-..++++-.++.+|..
T Consensus       203 v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         203 VRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             HHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence                3  2578888888865442 23456666667777753

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.15  E-value=0.25  Score=47.23  Aligned_cols=53  Identities=15%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~  295 (375)
                      ++++|+|+++.+|+.++..|+++|++|+++.++..                     ++.+.++..|+||..++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            47999999888999999999999999988866421                     234556778999977653

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.14  E-value=0.36  Score=47.76  Aligned_cols=76  Identities=26%  Similarity=0.363  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCC-------------------CCCH----Hhhc--cCCcEEEEcc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSR-------------------TKNP----EEIT--RQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~-------------------t~~L----~~~l--~~ADIVIsAv  293 (375)
                      -.|++|+|.|.|. +|..+++++...|++ |+.+.+.                   ..+.    .+.+  +..|+||.++
T Consensus       175 ~~g~~VlV~G~g~-vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            3589999999755 699999999899985 7665432                   1122    1223  2489999999


Q ss_pred             CCCCcccC--CCcCCCcEEEEeeec
Q 017184          294 GQPNMVRG--SWIKPGAVIIDVGIN  316 (375)
Q Consensus       294 G~p~~I~~--~~vk~gavVIDvgin  316 (375)
                      |.+..+..  ++++++-.++.+|..
T Consensus       254 g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       254 GRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCHHHHHHHHHHhccCCEEEEECCC
Confidence            97654322  467888888888864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.11  E-value=0.19  Score=47.99  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||.++|.|+|.  -+|++++..|+++|++|+++.++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            6899999999872  35999999999999999887654

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=92.07  E-value=0.27  Score=49.24  Aligned_cols=79  Identities=25%  Similarity=0.328  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCC---CCcccC-
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQ---PNMVRG-  301 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~---p~~I~~-  301 (375)
                      |+||+|+|||.|.- |++=++.|...|.+|++--|.-              .+..+.+++||+|..-++-   +..... 
T Consensus        16 LkgK~iaIIGYGsQ-G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~   94 (338)
T COG0059          16 LKGKKVAIIGYGSQ-GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKE   94 (338)
T ss_pred             hcCCeEEEEecChH-HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence            68999999999986 9999999999999999986652              3577999999999999883   222221 


Q ss_pred             --CCcCCCc-EEEEeeecCCC
Q 017184          302 --SWIKPGA-VIIDVGINPVE  319 (375)
Q Consensus       302 --~~vk~ga-vVIDvgin~~~  319 (375)
                        ..+++|+ +.+-=|+|...
T Consensus        95 I~p~Lk~G~aL~FaHGfNihf  115 (338)
T COG0059          95 IAPNLKEGAALGFAHGFNIHF  115 (338)
T ss_pred             hhhhhcCCceEEeccccceec
Confidence              2456664 44445555543

>PRK07985 oxidoreductase; Provisional

Probab=92.03  E-value=0.24  Score=47.95  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|++..+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            589999999999998999999999999999988754

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=92.02  E-value=0.34  Score=45.58  Aligned_cols=52  Identities=21%  Similarity=0.408  Sum_probs=41.8

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------CHHhhccCCcEEEEccCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      |+|.|+++-+|..++..|+++|.+|+...|+..                .+.+.+.+.|+||..+|.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~   68 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP   68 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence            589999999999999999999999998876532                1234567899999888754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.97  E-value=0.24  Score=47.87  Aligned_cols=38  Identities=32%  Similarity=0.461  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|..++..|+++|++|+++.++
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999989999999999999999888664

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.96  E-value=0.26  Score=38.50  Aligned_cols=32  Identities=31%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++|||.|.+ |--+|..|.+.|.+||++++..
T Consensus         1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccc
Confidence            6899999886 9999999999999999998864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08267 short chain dehydrogenase; Provisional

Probab=91.95  E-value=0.19  Score=46.94  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+++|+|+++-+|+.++..|+++|++|.++.++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~   34 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN   34 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            789999999999999999999999999988654

>PRK12744 short chain dehydrogenase; Provisional

Probab=91.93  E-value=0.21  Score=46.63  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      .++||+++|.|.++-+|+.++..|+++|++|.+++
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~   39 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH   39 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence            46899999999999999999999999999955554

>PRK09620 hypothetical protein; Provisional

Probab=91.92  E-value=0.4  Score=45.74  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcCC----------------cccHHHHHHHHhhCCCeEEEEcCCC----C---------------C----HH
Q 017184          240 IKGKRAVVIGRS----------------NIVGMPAALLLQREDATVSIVHSRT----K---------------N----PE  280 (375)
Q Consensus       240 l~GK~vvVIGrs----------------~~VGkpla~lL~~~gAtVtv~hs~t----~---------------~----L~  280 (375)
                      ++||+|+|-+.+                |-+|..+|..|+.+|++|++++...    .               +    +.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~   80 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMK   80 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHH
Confidence            479999998664                6679999999999999999887531    1               1    12


Q ss_pred             hhc--cCCcEEEEccCCCCc
Q 017184          281 EIT--RQADIIISAVGQPNM  298 (375)
Q Consensus       281 ~~l--~~ADIVIsAvG~p~~  298 (375)
                      +.+  .++|+||-++..+.|
T Consensus        81 ~~~~~~~~D~VIH~AAvsD~  100 (229)
T PRK09620         81 SIITHEKVDAVIMAAAGSDW  100 (229)
T ss_pred             HHhcccCCCEEEECccccce
Confidence            334  358999988876655

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=91.92  E-value=0.18  Score=50.55  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=51.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCC-CCC---HHhhccCCcEEEEccCCCC--cccCCCcCCCcEEEEeee
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSR-TKN---PEEITRQADIIISAVGQPN--MVRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~-t~~---L~~~l~~ADIVIsAvG~p~--~I~~~~vk~gavVIDvgi  315 (375)
                      -+|.|||+++.+|.-+..+|.++. .++.-..++ ..+   .++...++|+||.|.+.-.  -+-+...+.|..|||.+-
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa   82 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST   82 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            479999999999999999998876 243333222 222   2344468999999996321  122233467999999997


Q ss_pred             cCC
Q 017184          316 NPV  318 (375)
Q Consensus       316 n~~  318 (375)
                      .+.
T Consensus        83 dfR   85 (313)
T PRK11863         83 AHR   85 (313)
T ss_pred             hhh
Confidence            654

>PRK07831 short chain dehydrogenase; Provisional

Probab=91.90  E-value=0.25  Score=46.30  Aligned_cols=37  Identities=24%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEcCCc-ccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSN-IVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~-~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|.++ -+|+.++..|+++|++|+++.++
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~   51 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH   51 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999853 36999999999999999988654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.89  E-value=0.38  Score=48.12  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-------eEEEEcCC--------------------------CCCHHhhccCCcEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-------TVSIVHSR--------------------------TKNPEEITRQADII  289 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-------tVtv~hs~--------------------------t~~L~~~l~~ADIV  289 (375)
                      ++|.|||+++.||..++..|...|.       ++.+.+.+                          +.+..+.+++||||
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            5899999955579999999987763       46666542                          01335779999999


Q ss_pred             EEccCCCC
Q 017184          290 ISAVGQPN  297 (375)
Q Consensus       290 IsAvG~p~  297 (375)
                      |.++|.|.
T Consensus        83 vitaG~~~   90 (322)
T cd01338          83 LLVGAKPR   90 (322)
T ss_pred             EEeCCCCC
Confidence            99999753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02206 UDP-glucuronate decarboxylase

Probab=91.87  E-value=0.36  Score=50.19  Aligned_cols=58  Identities=28%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----C----------------C-HHhhccCCcEEEEccC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----K----------------N-PEEITRQADIIISAVG  294 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----~----------------~-L~~~l~~ADIVIsAvG  294 (375)
                      |..-++++|+|.|++|.||+.++..|+++|.+|+++.+..    .                | +...+..+|+||..++
T Consensus       114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa  192 (442)
T PLN02206        114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLAC  192 (442)
T ss_pred             ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeee
Confidence            4455789999999999999999999999999998875321    1                1 1233456899997665

>PRK08303 short chain dehydrogenase; Provisional

Probab=91.86  E-value=0.24  Score=48.52  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|++.-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            5789999999998778999999999999999988764

>PRK06720 hypothetical protein; Provisional

Probab=91.83  E-value=0.21  Score=45.19  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN  278 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~  278 (375)
                      ..++||.++|.|++.-+|+.++..|.++|++|.++.++.+.
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~   52 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQES   52 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            45789999999998877999999999999999988765433

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=91.83  E-value=0.23  Score=56.96  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             HHhhccCCcEEEEccC----CCCcccCC-C---cCCCc----EEEEeeecC
Q 017184          279 PEEITRQADIIISAVG----QPNMVRGS-W---IKPGA----VIIDVGINP  317 (375)
Q Consensus       279 L~~~l~~ADIVIsAvG----~p~~I~~~-~---vk~ga----vVIDvgin~  317 (375)
                      ++++++.||+||+++-    .|.+|+.+ +   +|+|.    +|+||.+..
T Consensus       291 ~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~  341 (1042)
T PLN02819        291 HEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDI  341 (1042)
T ss_pred             HHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCC
Confidence            4578899999999983    47789887 3   47787    999998774

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=91.80  E-value=0.59  Score=44.51  Aligned_cols=93  Identities=19%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------C--C----HH
Q 017184          224 CTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------K--N----PE  280 (375)
Q Consensus       224 cT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------~--~----L~  280 (375)
                      +.+..++..+.+.+..-.|.+++|.|.++.+|..++.++..+|+.|++..+..                 .  +    +.
T Consensus       121 ~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  200 (323)
T cd05282         121 INPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVK  200 (323)
T ss_pred             ccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHH
Confidence            33344444454444445688999999988889999999999999877654321                 1  1    12


Q ss_pred             hhc--cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          281 EIT--RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~l--~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                      +.+  +..|+|+.++|..... -.++++++..++++|..
T Consensus       201 ~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         201 EATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             HHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence            222  3589999998865432 23567888889998854

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK12746 short chain dehydrogenase; Provisional

Probab=91.74  E-value=0.21  Score=46.30  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      ++++|+++|.|+++-+|..++..|+++|++|.++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~   36 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH   36 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            3678999999999999999999999999998775

>PRK06128 oxidoreductase; Provisional

Probab=91.67  E-value=0.27  Score=47.44  Aligned_cols=36  Identities=22%  Similarity=0.479  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|++..+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            478999999999988999999999999999987643

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=91.61  E-value=0.31  Score=47.68  Aligned_cols=36  Identities=19%  Similarity=0.104  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||+|+|.|+++-+|..++..|+++|++|+++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r   38 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR   38 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence            678999999999998999999999999999887643

>PRK07791 short chain dehydrogenase; Provisional

Probab=91.60  E-value=0.22  Score=47.91  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ++||.++|.|++.-+|+.++..|+++|++|+++.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~   38 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI   38 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence            68999999999998999999999999999988754

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.50  E-value=0.37  Score=49.20  Aligned_cols=72  Identities=18%  Similarity=0.249  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-------CeEEEEcCC---------------------------------CCCHHh
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSR---------------------------------TKNPEE  281 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-------AtVtv~hs~---------------------------------t~~L~~  281 (375)
                      -.+|+|||+|.- |.++|..|.++|       .+|++..++                                 |.|+.+
T Consensus        11 ~~ki~ViGaG~w-GtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGSGNW-GSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            358999999886 999999999886       578775322                                 246778


Q ss_pred             hccCCcEEEEccCCCCc------ccCC-CcCCCcEEEEee
Q 017184          282 ITRQADIIISAVGQPNM------VRGS-WIKPGAVIIDVG  314 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~------I~~~-~vk~gavVIDvg  314 (375)
                      .+++||+||.+++...+      +.+- .+++++++|-+.
T Consensus        90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence            89999999999986432      3321 456676666653

>PRK08324 short chain dehydrogenase; Validated

Probab=91.49  E-value=0.29  Score=53.35  Aligned_cols=37  Identities=30%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+.||+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~  455 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLD  455 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4578999999987778999999999999999988765

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.46  E-value=0.44  Score=51.76  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .||+|+|||+|-+ |...|..|.+.|+.|+++.+
T Consensus       326 ~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~  358 (654)
T PRK12769        326 SDKRVAIIGAGPA-GLACADVLARNGVAVTVYDR  358 (654)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            6899999999997 99999999999999999965

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=91.46  E-value=1.5  Score=47.51  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---HHhhcc--CCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---PEEITR--QADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---L~~~l~--~ADIVIsAvG~  295 (375)
                      ..++|+|.|++|-+|+.++..|..+|.+|++....-.|   +...++  +.|+||.+++.
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~  438 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGV  438 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcc
Confidence            45689999999999999999999999888533322222   233333  68999987763

>PRK06483 dihydromonapterin reductase; Provisional

Probab=91.45  E-value=0.26  Score=45.27  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999988889999999999999999887764

>PRK05855 short chain dehydrogenase; Validated

Probab=91.39  E-value=0.27  Score=50.96  Aligned_cols=38  Identities=32%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++++++|+|+++-+|+.++..|+++|++|+++.|+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~  348 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDID  348 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35678999999998889999999999999999988765

>PRK08177 short chain dehydrogenase; Provisional

Probab=91.39  E-value=0.35  Score=44.24  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+|+|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence            6899999999999999999999999999887653

>PRK10423 transcriptional repressor RbsR; Provisional

Probab=91.39  E-value=3.2  Score=39.74  Aligned_cols=88  Identities=16%  Similarity=0.340  Sum_probs=57.6

Q ss_pred             eeeecHH-HHHHHHHHHHHHHHHhHhccCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCCeEEEE
Q 017184           85 KVIDGKA-VAKQIRDEITGEVSRMKDAIGVVP-------------GLAVILVG-DRKDSATYVRNKKKACQSVGINSFEV  149 (375)
Q Consensus        85 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~LaiI~vG-~d~aS~~Yv~~k~k~a~~~GI~~~~~  149 (375)
                      ++|+|+. ++++.++.+.+.+++|    |.+|             .+++|.-. +++--..+.+...+.|++.|.+....
T Consensus        17 rvLn~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~   92 (327)
T PRK10423         17 HVINKDRFVSEAITAKVEAAIKEL----NYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLC   92 (327)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHH----CCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEE
Confidence            4677764 6677777766666655    4444             45555432 34555666788899999999997765


Q ss_pred             eCCCCCCHHHHHHHHHHhhcCCCccEEEEe
Q 017184          150 HLPEDTSEQEVLKHISVFNDDPSVHGILVQ  179 (375)
Q Consensus       150 ~l~~~vs~~el~~~I~~LN~D~~V~GIlVq  179 (375)
                      ...  -+.++..+.++.+.+ .+|+||++.
T Consensus        93 ~~~--~~~~~~~~~~~~l~~-~~vdGiI~~  119 (327)
T PRK10423         93 NTE--GDEQRMNRNLETLMQ-KRVDGLLLL  119 (327)
T ss_pred             eCC--CCHHHHHHHHHHHHH-cCCCEEEEe
Confidence            433  244445567777655 479999996

>PRK05442 malate dehydrogenase; Provisional

Probab=91.36  E-value=0.45  Score=47.77  Aligned_cols=54  Identities=19%  Similarity=0.354  Sum_probs=40.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-------eEEEEcCC--------------------------CCCHHhhccCCcEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-------TVSIVHSR--------------------------TKNPEEITRQADII  289 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-------tVtv~hs~--------------------------t~~L~~~l~~ADIV  289 (375)
                      .||.|||+++.||..++..|...+.       ++.+.+..                          +.+..+.+++||||
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            5899999955579999998887652       46665531                          12345788999999


Q ss_pred             EEccCCC
Q 017184          290 ISAVGQP  296 (375)
Q Consensus       290 IsAvG~p  296 (375)
                      |.++|.|
T Consensus        85 VitaG~~   91 (326)
T PRK05442         85 LLVGARP   91 (326)
T ss_pred             EEeCCCC
Confidence            9999965

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.31  E-value=0.2  Score=48.80  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +..||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   39 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN   39 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            3579999999998888999999999999999888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
4a26_A	300	The Crystal Structure Of Leishmania Major N5,N10- M		3e-84
1dia_A	306	Human Methylenetetrahydrofolate Dehydrogenase Cyclo		2e-79
1a4i_A	301	Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE		2e-79
4a5o_A	286	Crystal Structure Of Pseudomonas Aeruginosa N5, N10		3e-73
1b0a_A	288	5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL		3e-72
3p2o_A	285	Crystal Structure Of Fold Bifunctional Protein From		8e-71
3l07_A	285	Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR		3e-68
4b4u_A	303	Crystal Structure Of Acinetobacter Baumannii N5, N1		2e-67
2c2x_A	281	Three Dimensional Structure Of Bifunctional Methyle		2e-58
3ngl_A	276	Crystal Structure Of Bifunctional 5,10-Methylenetet		5e-45
1edz_A	320	Structure Of The Nad-Dependent 5,10- Methylenetetra		3e-17

>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300

Iteration: 1
 Score =  308 bits (790), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 157/290 (54%), Positives = 201/290 (69%), Gaps = 3/290 (1%)
Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIG-VVPGLAVILVGDRKDSATYVRNKKKACQS 141
           SA++IDGKA+A  IR E+  +V+ +++  G  VPGLA I+VG R DS  YV+ K KA   
Sbjct: 5   SAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAE 64
Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
           VG+ SF V LPED S++ +  ++   N+DP+ HGI+VQLPLP H++E   +  +   KD 
Sbjct: 65  VGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124
Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
           D   P+N+G L  +GREP F PCT KG I LL R G ++ GKRAVV+GRSNIVG P A L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184
Query: 262 LQREDATVSIVHSRTKNPEEIT--RQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
           L +E+ATV+IVHS T   + I   R ADI+I+A+GQP  V+G WIK GA ++DVG  PV 
Sbjct: 185 LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP 244
Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
           D     GYRLVGDVC+EEA   A+ I+PVPGGVGPMTIAMLL NTL + K
Sbjct: 245 DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFK 294

>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 201/292 (68%), Gaps = 3/292 (1%)
Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           A A++++GK ++ QIR  +  +V+++K+ + G  P LA++ VG+R DS  Y+  K KA +
Sbjct: 2   APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
            +GI +  + LP  T+E EV+K+I+  N+D +VHG LVQLPL     I+ + ++NA++ E
Sbjct: 62  EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121
Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
           KDVDG   +N GRLA       FIPCTPKGC+EL+   G  I G+ AVV+GRS IVG P 
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
             LL   +ATV+  HS+T + +E   + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
            D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293

>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301

Iteration: 1
 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 201/292 (68%), Gaps = 3/292 (1%)
Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           A A++++GK ++ QIR  +  +V+++K+ + G  P LA++ VG+R DS  Y+  K KA +
Sbjct: 2   APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
            +GI +  + LP  T+E EV+K+I+  N+D +VHG LVQLPL     I+ + ++NA++ E
Sbjct: 62  EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121
Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
           KDVDG   +N GRLA       FIPCTPKGC+EL+   G  I G+ AVV+GRS IVG P 
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
             LL   +ATV+  HS+T + +E   + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
            D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293

>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286

Iteration: 1
 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/291 (50%), Positives = 189/291 (64%), Gaps = 8/291 (2%)
Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A++IDGKA+A  +R +I   V+  +     VPGLAVILVG    S  YV +K+K C+ V
Sbjct: 4   TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LP +TS+ ++L  I   NDDP++ GILVQLPLP H+D   +L  +  +KDVD
Sbjct: 64  GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP NIGRLA   R PL  PCTPKG + LL   G D+ G  AVV+G SNIVG P AL L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
                TV++ H  T++  +   +AD+++ A G+P +V+G WIK GA++IDVGIN   D  
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG- 240
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
                RLVGDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +H+
Sbjct: 241 -----RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD 286

>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288

Iteration: 1
 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/293 (48%), Positives = 184/293 (62%), Gaps = 8/293 (2%)
Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +AK+IDGK +A+Q+R E+  +V     A    PGLAV+LVG    S  YV +K+KAC+ V
Sbjct: 2   AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LPE TSE E+L+ I   N D ++ GILVQLPLP  ID   +L  +  +KDVD
Sbjct: 62  GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP N+GRL  R   P   PCTP+G + LL RY  D  G  AVVIG SNIVG P ++ L
Sbjct: 122 GFHPYNVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
                T ++ H  TKN       AD++I AVG+P  + G WIK GA++IDVGIN +E+ K
Sbjct: 180 LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGK 239
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
                 +VGDV +E+A + AS ITPVPGGVGPMT+A L+ NTL +    H+ Q
Sbjct: 240 ------VVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQ 286

>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285

Iteration: 1
 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/288 (49%), Positives = 190/288 (65%), Gaps = 8/288 (2%)
Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           ++DGKA++ +I++E+  E ++   + G+   LAVILVGD   S TYV++K KAC+  GI 
Sbjct: 6   LLDGKALSAKIKEELK-EKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIK 64
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S   HL E+ ++ E+L  I+  N D SVHGILVQLPLP HI +  IL ++   KDVDGFH
Sbjct: 65  SLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH 124
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P+N+G L + G E  F+PCTP G  +LL  Y  D++GK AV+IG SNIVG P A  L   
Sbjct: 125 PINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNA 183
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
            ATVS+ H +TK+    TRQAD+II A G  N++R   +K G +++DVGIN +E  K   
Sbjct: 184 GATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESGK--- 240
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
              +VGDV +EE  + +S ITPVPGGVGP TIA LL NT+ SAK   N
Sbjct: 241 ---IVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKNRLN 285

>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285

Iteration: 1
 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 8/287 (2%)
Query: 86  VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
           +IDGK+++K +++ +  +V   K    + P L  I+VG+   S TYV +K+KAC  VGI+
Sbjct: 6   LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
           S  + LPE T+E E+L+ I   N+D SVH ILVQLPLP HI++ +++ ++  EKDVDGFH
Sbjct: 66  SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
           P N+GRL +R ++ L   CTPKG + +L  YG   +G  AVV+G SN+VG P + LL   
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
            ATV+  H  T + +  T +ADI+I AVG+PN +    +K GAV+IDVGIN V+      
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 239
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
             ++VGDV +    +  +AITPVPGGVGPMTI  LL NT   A+ ++
Sbjct: 240 --KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 284

>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303

Iteration: 1
 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/287 (45%), Positives = 187/287 (65%), Gaps = 9/287 (3%)
Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           A V+DG+A+AKQI + +   V  +K   G  P LA ILVGD   SATYVR K  AC+ VG
Sbjct: 23  ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
           ++S ++ LP++T+ +++L  I   N +P VHGIL+Q P+P  IDE++  +A+S+ KDVDG
Sbjct: 83  MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
              L  GR+AM   E  +   TP G + +L     +I GK AVV+GRS I+G P A++L 
Sbjct: 143 VTCLGFGRMAM--GEAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLL 200
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
           + +ATV+I HSRT+N  E+ +QADII+ AVG+  +++  WIK GAV++D G +P +    
Sbjct: 201 QANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG- 259
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                 VGD+  +   E+ASA TPVPGGVGPMTI  L+  T+ +A++
Sbjct: 260 ------VGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEK 300

>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/292 (44%), Positives = 172/292 (58%), Gaps = 19/292 (6%)
Query: 84  AKVIDGKAVAKQIRDEITGEVSR---MKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           A ++DGKA     RDEI G++ +     DA G  PGL  ILVGD   S  YVR K   C 
Sbjct: 3   AIMLDGKAT----RDEIFGDLKQRVAALDAAGRTPGLGTILVGDDPGSQAYVRGKHADCA 58
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKD 200
            VGI S    LP D S   + + I   N +P   G +VQLPLP H+DE + L  V   KD
Sbjct: 59  KVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKD 118
Query: 201 VDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAAL 260
            DG HP N+GRL +    PL  PCTP+G + LL RY   I G   VVIGR   VG P  L
Sbjct: 119 ADGLHPTNLGRLVLGTPAPL--PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGL 176
Query: 261 LLQR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
           LL R  E+ATV++ H+ T++   +TRQADI+++AVG  +++    ++PGA +IDVG++  
Sbjct: 177 LLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRT 236
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
           +D        LVGDV + +  E+A  ++P PGGVGP+T A LL+N +  A+R
Sbjct: 237 DDG-------LVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280

>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276

Iteration: 1
 Score =  178 bits (451), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           K++ G+ +A++  + + G + R     G+ P L +I +GD + ++ Y R K +  + +GI
Sbjct: 2   KILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI 57
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
            + ++   +D S +++LK I     DP ++GI+++ PLP   D   I+  +   KDVD  
Sbjct: 58  -AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDAL 116
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
            P N G +A+  RE   +P TP+  I+++  YG+        ++ RS +VG P +++L  
Sbjct: 117 SPYNQGLIAL-NRE-FLVPATPRAVIDIMDYYGY--HENTVTIVNRSPVVGRPLSMMLLN 172
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
            + TVS+ HS+TK+   +TR + I++ AVG+P  +    + PG+V+IDVGIN V D    
Sbjct: 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND---- 228
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
              ++VGD  +E+  E   AITPVPGGVGP+T   +L N + +A+   N
Sbjct: 229 ---KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQKN 274

>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 136/318 (42%), Gaps = 38/318 (11%)
Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDA-IGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
           + I    VA+    EI   V   K    G  P L   L  +   +  Y    +K  +S+G
Sbjct: 6   RTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
              +++ + ED    E  + I   N D SV+GI+V  P+  +  +Q +   V  EKDV+G
Sbjct: 66  F-RYDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 204 FHPL-------NIGRLAMRGREPLFIPCTPKGCI---ELLHRY------GFDIKGKRAVV 247
            + +       N+  L    R    +PCTP   +   E L  Y      G  + GK+ +V
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIV 182
Query: 248 IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS--WIK 305
           I RS IVG P A LL  + ATV  V     N ++ TR   + ++     ++   S   +K
Sbjct: 183 INRSEIVGRPLAALLANDGATVYSVD--VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLK 240
Query: 306 PGAVIIDVGIN--PVEDAKSPRGYRLVGDVCYEEAC---------EVASAITPVPGGVGP 354
             ++  DV I   P E+ K P  Y   G VC   AC         E AS   P+ G V  
Sbjct: 241 KCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV-- 298
Query: 355 MTIAMLLSNTLTSAKRVH 372
            TIAMLL N L   + V 
Sbjct: 299 -TIAMLLRNMLRLVRNVE 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	0.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	0.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	0.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	0.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	0.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	0.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	1e-172
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	1e-171
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	1e-144
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-13
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	8e-04
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	9e-04

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301

 Score =  532 bits (1373), Expect = 0.0
 Identities = 145/294 (49%), Positives = 201/294 (68%), Gaps = 3/294 (1%)

Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           A A++++GK ++ QIR  +  +V+++K+ + G  P LA++ VG+R DS  Y+  K KA +
Sbjct: 2   APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61

Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
            +GI +  + LP  T+E EV+K+I+  N+D +VHG LVQLPL     I+ + ++NA++ E
Sbjct: 62  EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121

Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
           KDVDG   +N GRLA       FIPCTPKGC+EL+   G  I G+ AVV+GRS IVG P 
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181

Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
             LL   +ATV+  HS+T + +E   + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241

Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
            D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR  
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFL 295

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300

 Score =  530 bits (1368), Expect = 0.0
 Identities = 156/294 (53%), Positives = 202/294 (68%), Gaps = 3/294 (1%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQS 141
           SA++IDGKA+A  IR E+  +V+ +++   G VPGLA I+VG R DS  YV+ K KA   
Sbjct: 5   SAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAE 64

Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
           VG+ SF V LPED S++ +  ++   N+DP+ HGI+VQLPLP H++E   +  +   KD 
Sbjct: 65  VGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124

Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
           D   P+N+G L  +GREP F PCT KG I LL R G ++ GKRAVV+GRSNIVG P A L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184

Query: 262 LQREDATVSIVHS--RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
           L +E+ATV+IVHS   T++  +  R ADI+I+A+GQP  V+G WIK GA ++DVG  PV 
Sbjct: 185 LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP 244

Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
           D     GYRLVGDVC+EEA   A+ I+PVPGGVGPMTIAMLL NTL + K    
Sbjct: 245 DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALG 298

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288

 Score =  513 bits (1323), Expect = 0.0
 Identities = 143/293 (48%), Positives = 184/293 (62%), Gaps = 8/293 (2%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +AK+IDGK +A+Q+R E+  +V     A    PGLAV+LVG    S  YV +K+KAC+ V
Sbjct: 2   AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 61

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LPE TSE E+L+ I   N D ++ GILVQLPLP  ID   +L  +  +KDVD
Sbjct: 62  GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 121

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP N+GRL    R P   PCTP+G + LL RY  D  G  AVVIG SNIVG P ++ L
Sbjct: 122 GFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
                T ++ H  TKN       AD++I AVG+P  + G WIK GA++IDVGIN +E+ K
Sbjct: 180 LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGK 239

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
                 +VGDV +E+A + AS ITPVPGGVGPMT+A L+ NTL +    H+ Q
Sbjct: 240 ------VVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQ 286

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286

 Score =  512 bits (1321), Expect = 0.0
 Identities = 145/291 (49%), Positives = 189/291 (64%), Gaps = 8/291 (2%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +A++IDGKA+A  +R +I   V+  +     VPGLAVILVG    S  YV +K+K C+ V
Sbjct: 4   TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LP +TS+ ++L  I   NDDP++ GILVQLPLP H+D   +L  +  +KDVD
Sbjct: 64  GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP NIGRLA   R PL  PCTPKG + LL   G D+ G  AVV+G SNIVG P AL L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
                TV++ H  T++  +   +AD+++ A G+P +V+G WIK GA++IDVGIN   D +
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADGR 241

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
                 LVGDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +H+
Sbjct: 242 ------LVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD 286

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285

 Score =  508 bits (1311), Expect = 0.0
 Identities = 130/290 (44%), Positives = 185/290 (63%), Gaps = 8/290 (2%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +  +IDGK+++K +++ +  +V   K    + P L  I+VG+   S TYV +K+KAC  V
Sbjct: 3   AMILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQV 62

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           GI+S  + LPE T+E E+L+ I   N+D SVH ILVQLPLP HI++ +++ ++  EKDVD
Sbjct: 63  GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVD 122

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP N+GRL +R  +     CTPKG + +L  YG   +G  AVV+G SN+VG P + LL
Sbjct: 123 GFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLL 181

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
               ATV+  H  T + +  T +ADI+I AVG+PN +    +K GAV+IDVGIN V+   
Sbjct: 182 LNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-- 239

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
                ++VGDV +    +  +AITPVPGGVGPMTI  LL NT   A+ ++
Sbjct: 240 -----KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 284

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285

 Score =  506 bits (1305), Expect = 0.0
 Identities = 145/291 (49%), Positives = 194/291 (66%), Gaps = 8/291 (2%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +  ++DGKA++ +I++E+  +   +K   G+   LAVILVGD   S TYV++K KAC+  
Sbjct: 3   AMTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEEC 61

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           GI S   HL E+ ++ E+L  I+  N D SVHGILVQLPLP HI +  IL ++   KDVD
Sbjct: 62  GIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVD 121

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           GFHP+N+G L + G E  F+PCTP G ++LL  Y  D++GK AV+IG SNIVG P A +L
Sbjct: 122 GFHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATML 180

Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
               ATVS+ H +TK+    TRQAD+II A G  N++R   +K G +++DVGIN +E  K
Sbjct: 181 LNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESGK 240

Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
                 +VGDV +EE  + +S ITPVPGGVGPMTIAMLL NT+ SAK   N
Sbjct: 241 ------IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN 285

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276

 Score =  479 bits (1235), Expect = e-172
 Identities = 95/289 (32%), Positives = 162/289 (56%), Gaps = 16/289 (5%)

Query: 85  KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
           K++ G+ +A++  + + G +    +  G+ P L +I +GD + ++ Y R K +  + +GI
Sbjct: 2   KILRGEEIAEKKAENLHGII----ERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI 57

Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
              ++   +D S +++LK I     DP ++GI+++ PLP   D   I+  +   KDVD  
Sbjct: 58  AV-DLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDAL 116

Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
            P N G +A+       +P TP+  I+++  YG         ++ RS +VG P +++L  
Sbjct: 117 SPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLN 172

Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
            + TVS+ HS+TK+   +TR + I++ AVG+P  +    + PG+V+IDVGIN V D    
Sbjct: 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND---- 228

Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
              ++VGD  +E+  E   AITPVPGGVGP+T   +L N + +A+   N
Sbjct: 229 ---KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQKN 274

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281

 Score =  477 bits (1231), Expect = e-171
 Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 13/290 (4%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
            A ++DGKA   +I  ++   V+ +  A G  PGL  ILVGD   S  YVR K   C  V
Sbjct: 2   GAIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKV 60

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           GI S    LP D S   + + I   N +P   G +VQLPLP H+DE + L  V   KD D
Sbjct: 61  GITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDAD 120

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
           G HP N+GRL +    P  +PCTP+G + LL RY   I G   VVIGR   VG P  LLL
Sbjct: 121 GLHPTNLGRLVL--GTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLL 178

Query: 263 QR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
            R  E+ATV++ H+ T++   +TRQADI+++AVG  +++    ++PGA +IDVG++  +D
Sbjct: 179 TRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD 238

Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
                   LVGDV + +  E+A  ++P PGGVGP+T A LL+N +  A+R
Sbjct: 239 -------GLVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320

 Score =  410 bits (1057), Expect = e-144
 Identities = 82/332 (24%), Positives = 122/332 (36%), Gaps = 64/332 (19%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
            + I    VA+    EI   V   K    G  P L   L  +   +  Y    +K  +S+
Sbjct: 5   GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 64

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G       L     +  + + I   N D SV+GI+V  P+  +  +Q +   V  EKDV+
Sbjct: 65  GFRY---DLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 121

Query: 203 GFHPLNIGRL-------AMRGREPLFIPCTPKGCIELLHRY---------GFDIKGKRAV 246
           G + +    L           R    +PCTP   +++L            G  + GK+ +
Sbjct: 122 GLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCI 181

Query: 247 VIGRSNIVGMPAALLLQREDATVSIVHSRTKN-------------------------PEE 281
           VI RS IVG P A LL  + ATV  V                                ++
Sbjct: 182 VINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKK 241

Query: 282 ITRQADIIISAVGQPN-MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE 340
            +  +D++I+ V   N      +IK GAV I+                       ++  E
Sbjct: 242 CSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFS---------------DDVKE 286

Query: 341 VASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
            AS   P+ G V   TIAMLL N L   + V 
Sbjct: 287 KASLYVPMTGKV---TIAMLLRNMLRLVRNVE 315

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 34/164 (20%)

Query: 225 TPKGCI-ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT 283
           T +G I   +    F I G    V+G   + GM  A       A V +    +     I 
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195

Query: 284 ----------------RQADIIISAVGQPNMVRG----SWIKPGAVIIDVGINPVEDAKS 323
                           R  D+ I+ +  P +V      + +     +ID+   P      
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTI--PALVVTANVLAEMPSHTFVIDLASKP------ 247

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTS 367
                       E+    A  +  +PG V P T   +L++ L  
Sbjct: 248 ----GGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVK 287

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 41/160 (25%)

Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV----------------HS 274
             +    + I G +  V+G     GM  A       A V +                   
Sbjct: 146 LAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPF 204

Query: 275 RTKNPEEITRQADIIISAVGQPNMVRG----SWIKPGAVIIDVGINPVEDAKSPRGYRLV 330
            T   +E  +  DI I+ +  P+M+      S + P  +I+D+   P        G    
Sbjct: 205 HTDELKEHVKDIDICINTI--PSMILNQTVLSSMTPKTLILDLASRPG-------G---- 251

Query: 331 GDVCYEEACE----VASAITPVPGGVGPMTIAMLLSNTLT 366
                 +  E     A     +PG V P T   +L+N L+
Sbjct: 252 ---TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVLS 288

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 67/477 (14%), Positives = 121/477 (25%), Gaps = 190/477 (39%)

Query: 1   MGGS-RSMIFAD-CSSSTTARLVPF-------GRSR----LLCGGGALCAR------RRL 41
           + GS ++ +  D C S      + F               +L     L  +       R 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 42  HVGVGPSLP-----ASLRTTLTVHSSPSPSLPVM-NVSCSATMASEASAKVIDG------ 89
                  L      A LR  L      +  L V+ NV          +AK  +       
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQ---------NAKAWNAFNLSCK 267

Query: 90  -------KAVAKQIRDEITGEVS-----------------------RMKD----AIGVVP 115
                  K V   +    T  +S                       R +D     +   P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 116 GLAVILVG----DRKDSATYVR----NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVF 167
              + ++     D   +    +    +K        +N  E   P +   +++   +SVF
Sbjct: 328 -RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEY--RKMFDRLSVF 381

Query: 168 NDD---P--------------------------------------SVHGILVQLPLPCHI 186
                 P                                      S+  I   L L   +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKL 439

Query: 187 DE-----QSILNAVSMEKDVD-----------------GFHPLNIGRLAMRGREPLFIPC 224
           +      +SI++  ++ K  D                 G H  NI       R  LF   
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE---HPERMTLF--- 493

Query: 225 TPKGCIELLHRYGFDIKGK-RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT 283
                  +   + F ++ K R       N  G     L Q +     I      N  +  
Sbjct: 494 -RM----VFLDFRF-LEQKIRHDSTAW-NASGSILNTLQQLKFYKPYI----CDNDPKYE 542

Query: 284 RQADIIISAVGQ--PNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEA 338
           R  + I+  + +   N++          ++ + +   ++A             +EEA
Sbjct: 543 RLVNAILDFLPKIEENLICS----KYTDLLRIALMAEDEA------------IFEEA 583

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 34/113 (30%)

Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
           G ++ L     ++K K  +V+G     R+ I        L +E A V +  +RTK     
Sbjct: 115 GFLKSLKSLIPEVKEKSILVLGAGGASRAVIYA------LVKEGAKVFLW-NRTKEKAIK 167

Query: 278 -----------NPEEITRQADIIISA--VG----QPNMVRGSWIKPGAVIIDV 313
                      +PEE+  +  +I++   VG     P +     IK   V++D+
Sbjct: 168 LAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDI 220

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Length = 298

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATVSIV-HSRTKNPEEITRQADIIISAV---GQPN 297
            K  +V G   + G+  A  L+     +SI+        E I   AD++I +V       
Sbjct: 22  HKIVIVGGYGKLGGL-FARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLE 80

Query: 298 MVR--GSWIKPGAVIIDVG---INPVEDAKSPRGYRLVG 331
            +     ++    ++ D+      P+          ++G
Sbjct: 81  TIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	100.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	100.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	100.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	100.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	100.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	100.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	100.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	100.0
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	100.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	99.96
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	99.95
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	99.94
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.94
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	99.94
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.93
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	99.93
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	99.9
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	99.9
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	99.9
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	99.89
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	99.87
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.85
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	99.84
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.83
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.43
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.96
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.81
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.68
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.63
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.61
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.53
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.46
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.4
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.4
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.38
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.35
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.3
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.29
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.18
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.17
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.15
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.15
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.11
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.1
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.1
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.09
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.08
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.07
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.07
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.07
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.06
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.06
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.05
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.05
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.05
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.04
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.03
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.03
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.02
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.0
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.97
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.94
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.93
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.93
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.93
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.93
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.9
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.89
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.87
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.86
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.85
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.85
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.84
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.83
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.78
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.7
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.68
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.67
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.63
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.6
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.58
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.58
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.56
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.53
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.5
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.49
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.47
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.44
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.41
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.4
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.4
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.33
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.33
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.33
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.3
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.3
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.28
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.28
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.22
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.18
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.16
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.15
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.11
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.08
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.07
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.07
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.06
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.06
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.02
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.0
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.93
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.91
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.88
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.88
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.82
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.81
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.76
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.71
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.7
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.67
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.63
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.62
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.61
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.59
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.57
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.55
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.55
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.53
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.53
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.53
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.51
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.5
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.5
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.5
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.49
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.49
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.49
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.48
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.48
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.46
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.46
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.44
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.44
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.44
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.43
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.43
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.41
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.39
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.39
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.38
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.38
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.38
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.33
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.32
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.3
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.3
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.3
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.27
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.26
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.26
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.24
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.24
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.23
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.2
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.2
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.19
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.18
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.18
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.17
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.16
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.16
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.15
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.15
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.13
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.13
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.13
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.12
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.11
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.11
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.1
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.1
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.1
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.1
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.09
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.09
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.09
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.09
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.08
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.08
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.08
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.07
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.06
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.06
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.05
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.05
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.04
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.04
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.03
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.03
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.03
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.03
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.02
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.02
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.01
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.01
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.01
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.0
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.0
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.99
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.99
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.99
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.98
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.97
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.97
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.96
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.96
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.96
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.96
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.96
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.96
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.95
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.95
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.95
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.95
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	95.95
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.95
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.93
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	95.93
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.92
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.91
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.91
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	95.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.91
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.91
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	95.9
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.9
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.9
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.9
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.89
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.89
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.88
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.88
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	95.87
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.87
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.87
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.87
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.86
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.85
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.85
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.84
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.83
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.83
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.83
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.82
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.82
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.81
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.81
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.81
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.81
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.81
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.8
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.8
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.8
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	95.8
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.79
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.78
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.78
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.78
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.78
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.78
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.77
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.76
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.76
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.76
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.76
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.75
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.75
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.74
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.73
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.73
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.72
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.72
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.7
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.7
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.69
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.69
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.69
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.68
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.68
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.66
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.66
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	95.66
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.65
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	95.65
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.64
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.64
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.64
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.64
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.64
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.63
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	95.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.62
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.62
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.62
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.62
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.62
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.6
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.59
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.59
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	95.59
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.58
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.58
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.57
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.57
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.56
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.56
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.56
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.55
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	95.53
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.53
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.53
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.52
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.52
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.52
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.51
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.51
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.51
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.51
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.5
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.5
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.49
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.49
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.49
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.45
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.44
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	95.44
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.43
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.43
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.43
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.43
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.42
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.42
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.41
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	95.4
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.4
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.4
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	95.39
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.39
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.38
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.37
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.37
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.35
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.35
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.34
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.34
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.33
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.33
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.32
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.31
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.3
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.29
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.29
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.29
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.28
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.28
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.28
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.26
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.26
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.25
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.23
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.22
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.21
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	95.21
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.21
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.2
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.2
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.19
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.19
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.19
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.18
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	95.17
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.17
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.17
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.16
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.15
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.15
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.13
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.13
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.13
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.12
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.09
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.09
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.08
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.08
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.08
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.08
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.02
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.02
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.01
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.01
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.0
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.99
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.98
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	94.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.96
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.96
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.94
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	94.93
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.93
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	94.92
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.91
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.9
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.9
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.9
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.88
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.88
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.88
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.88
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.87
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.87
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.87
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.86
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.86
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.86
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.84
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.83
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.82
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.82
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.82
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	94.81
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	94.81
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.8
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	94.8
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.79
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.79
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.78
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.78
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.76
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.75
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.75
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	94.72
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	94.72
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.72
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.72
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.72
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	94.72
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.72
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.69
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.68
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	94.66
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.66
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.65
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.65
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.65
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.65
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.63
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.62
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	94.61
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.6
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.59
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	94.59
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.59
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.58
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	94.58
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.57
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.57
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.56
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.55
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.54
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.53

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=100.00  E-value=9.9e-97  Score=716.87  Aligned_cols=284  Identities=46%  Similarity=0.775  Sum_probs=275.9

Q ss_pred             ccccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 017184           80 SEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQE  159 (375)
Q Consensus        80 ~~m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~e  159 (375)
                      ..| |+|||||++|++|++++++++++|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|
T Consensus        20 ~~M-a~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~e   98 (303)
T 4b4u_A           20 GHM-ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQ   98 (303)
T ss_dssp             --C-CEECCHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHH
T ss_pred             CCC-CEEeehHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHH
Confidence            345 7899999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCC
Q 017184          160 VLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFD  239 (375)
Q Consensus       160 l~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~  239 (375)
                      |++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|  ++.|+||||.||+++|++|+++
T Consensus        99 ll~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~  176 (303)
T 4b4u_A           99 LLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIE  176 (303)
T ss_dssp             HHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999976  6799999999999999999999


Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE  319 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~  319 (375)
                      ++||+|+|||||++||||++++|+++|||||+||++|+||++++++|||||+|+|+|++|++||||||++|||+|+|+.+
T Consensus       177 l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDVGin~~~  256 (303)
T 4b4u_A          177 IAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRD  256 (303)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHHTCSEEEECSCSTTCBCGGGSCTTCEEEECCCBCCT
T ss_pred             CCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHhhcCCeEEeccCCCCccccccccCCCEEEEeceecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       320 ~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                      +       +++|||||++++++|++||||||||||||++|||+|+++++||+.|
T Consensus       257 ~-------~~vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~Ntv~aa~r~~G  303 (303)
T 4b4u_A          257 G-------GGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKALG  303 (303)
T ss_dssp             T-------SCBCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C-------CeECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            4       7999999999999999999999999999999999999999999875

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=100.00  E-value=1.5e-92  Score=688.36  Aligned_cols=291  Identities=53%  Similarity=0.901  Sum_probs=282.3

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccC-CCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIG-VVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g-~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      +++||||++|++|++++++++++|+++.| ++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++
T Consensus         6 a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~   85 (300)
T 4a26_A            6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEV   85 (300)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHH
T ss_pred             cEEeehHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            68999999999999999999999998877 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCC
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|+|+|+.|+..++|+||||.|++++|++|+++++|
T Consensus        86 ~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i~l~G  165 (300)
T 4a26_A           86 NVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAG  165 (300)
T ss_dssp             HHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999987546889999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH--hhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE--EITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~--~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+|+|||||++||+|++++|+++||+||+|||+|++++  +++++|||||+|+|.|++|+.+|+|+|++|||+|+|++++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~~  245 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPD  245 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEESC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCCcC
Confidence            99999999999999999999999999999999999999  9999999999999999999999999999999999999988


Q ss_pred             CCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       321 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +++++|+|++|||||+++.++|++||||||||||||++|||+|+++++++|.+.
T Consensus       246 ~~~~~g~kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  299 (300)
T 4a26_A          246 PSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGV  299 (300)
T ss_dssp             SCSTTSCEEECSBCHHHHTTTCSEEECTTTSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcccCCceeecCccHHHHHhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHhcC
Confidence            766677799999999999999999999999999999999999999999999875

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=100.00  E-value=2.5e-92  Score=686.65  Aligned_cols=293  Identities=49%  Similarity=0.850  Sum_probs=274.2

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhcc-CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEV  160 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el  160 (375)
                      |.+++||||++|++|++++++++++|+++. +++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus         2 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~el   81 (301)
T 1a4i_A            2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEV   81 (301)
T ss_dssp             CCCEECCHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHH
T ss_pred             CCCEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            567899999999999999999999999875 4789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccEEEEeCCCCCC--CCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCC
Q 017184          161 LKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGF  238 (375)
Q Consensus       161 ~~~I~~LN~D~~V~GIlVqlPLp~~--i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i  238 (375)
                      ++.|++||+|++||||+||+|||+|  +|+++++++|+|+||||||||+|+|+|+.|...++|+||||.|++++|++|++
T Consensus        82 l~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i  161 (301)
T 1a4i_A           82 MKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGV  161 (301)
T ss_dssp             HHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCC
Confidence            9999999999999999999999999  99999999999999999999999999998743478999999999999999999


Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~  318 (375)
                      +++||+|+|||+|++||+|++++|+++|||||+||++|++|.+++++|||||+|+|+|++|+++|+|+|++|||+|+|++
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV  241 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       319 ~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +++++.+|+|++|||||+++.++|++||||||||||||++|||+|+++++++|+.-
T Consensus       242 ~d~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~~  297 (301)
T 1a4i_A          242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK  297 (301)
T ss_dssp             ---------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccccccCCCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhhc
Confidence            76544556689999999999999999999999999999999999999999988753

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=3.5e-92  Score=681.47  Aligned_cols=284  Identities=52%  Similarity=0.840  Sum_probs=275.8

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      |++++||||++|++|++++++++++|+++.+++|+||+|+||+||+|+.|+++|.|+|+++||++++++||++++|+||+
T Consensus         3 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell   82 (286)
T 4a5o_A            3 MTAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLL   82 (286)
T ss_dssp             -CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHH
T ss_pred             cccEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            56789999999999999999999999988778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK  241 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~  241 (375)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|++|+|+|+.|  .++|+||||.|++++|++|+++++
T Consensus        83 ~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i~l~  160 (286)
T 4a5o_A           83 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLY  160 (286)
T ss_dssp             HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999976  678999999999999999999999


Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      ||+|+|||||++||+|++++|+++|||||+|||+|++|++++++|||||+|+|+|++|+++|+|||++|||+|+|++++ 
T Consensus       161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~~-  239 (286)
T 4a5o_A          161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQAD-  239 (286)
T ss_dssp             TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCSSCC-
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHHcCCCeEEEEeccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                          | |++|||||+++.++|++||||||||||||++|||+|+++++++|++
T Consensus       240 ----g-kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~~~~  286 (286)
T 4a5o_A          240 ----G-RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD  286 (286)
T ss_dssp             ----C-CSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ----C-CcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHHHHHHHHHhcC
Confidence                3 8999999999999999999999999999999999999999998864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=100.00  E-value=1.5e-91  Score=677.57  Aligned_cols=283  Identities=50%  Similarity=0.830  Sum_probs=274.9

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      ++++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         2 ma~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~   81 (288)
T 1b0a_A            2 AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLE   81 (288)
T ss_dssp             CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHH
T ss_pred             CCeEecHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            37899999999999999999999999875578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCC
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      .|++||+|++||||+||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||.|++++|++|+++++|
T Consensus        82 ~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~g  159 (288)
T 1b0a_A           82 LIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFG  159 (288)
T ss_dssp             HHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999986  5789999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK  322 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~  322 (375)
                      |+|+|||+|++||+|++++|+++|||||+||++|++|.+++++|||||+|+|+|++|+++|+|+|++|||+|+|+.++  
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~~--  237 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLEN--  237 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTT--
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999865  


Q ss_pred             CCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       323 ~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                         | |++|||||+++.++|++||||||||||||++|||+|+++++++|+.
T Consensus       238 ---g-~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~  284 (288)
T 1b0a_A          238 ---G-KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHD  284 (288)
T ss_dssp             ---S-CEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ---C-CccCCcCHHHHhhhccEecCCCCCccHHHHHHHHHHHHHHHHHhhc
Confidence               3 8999999999999999999999999999999999999999998875

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=100.00  E-value=2.4e-91  Score=675.70  Aligned_cols=281  Identities=51%  Similarity=0.816  Sum_probs=272.1

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++ |.+|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.
T Consensus         4 ~~iidGk~~a~~i~~~~~~~v~~l~~~-~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~   82 (285)
T 3p2o_A            4 MTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLAL   82 (285)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred             CEEeehHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            479999999999999999999999877 5699999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccc-cccCCHHHHHHHHHHhCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPL-FIPCTPKGCIELLHRYGFDIKG  242 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~-~~PcT~~gvi~lL~~~~i~l~G  242 (375)
                      |++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|+|+|+.|  .+. |+||||+|++++|++|+++++|
T Consensus        83 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i~l~G  160 (285)
T 3p2o_A           83 INTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEIDLEG  160 (285)
T ss_dssp             HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999976  456 9999999999999999999999


Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK  322 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~  322 (375)
                      |+|+|||||++||+|++++|+++|||||+|||+|++|++++++|||||+|+|+|++|+++|+|+|++|||+|+|+.++  
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~~--  238 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLES--  238 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEECTT--
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCcccC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999876  


Q ss_pred             CCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       323 ~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                         | |++|||||+++.++|++||||||||||||++|||+|+++++++|++
T Consensus       239 ---g-kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~~  285 (285)
T 3p2o_A          239 ---G-KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN  285 (285)
T ss_dssp             ---S-CEECSBCHHHHTTTEEEECCSSSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ---C-CEeccccHHHHHhhheEeCCCCCcCcHHHHHHHHHHHHHHHHHhhC
Confidence               3 8999999999999999999999999999999999999999998864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=100.00  E-value=9.4e-91  Score=671.51  Aligned_cols=281  Identities=47%  Similarity=0.799  Sum_probs=272.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.
T Consensus         4 ~~ildGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~   83 (285)
T 3l07_A            4 MILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLEL   83 (285)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred             CEEeehHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            47999999999999999999999998878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++|||||||+|||+|+|+++++++|+|+|||||+|++|+|+|+.|. .++|+||||.|++++|++|+++++||
T Consensus        84 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~-~~~~~PcTp~gv~~lL~~~~i~l~Gk  162 (285)
T 3l07_A           84 IDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGA  162 (285)
T ss_dssp             HHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTC-TTCCCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999872 27899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS  323 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~  323 (375)
                      +|+|||||++||+|++++|+++|||||+|||+|++|++++++|||||+|+|+|++|+++|+|+|++|||+|+|+.+    
T Consensus       163 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~----  238 (285)
T 3l07_A          163 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----  238 (285)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCEEET----
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCCCCCCCCHHHcCCCcEEEEecccCcC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             CCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       324 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                        | |++|||||+++.++|++||||||||||||++|||+|++++++++.
T Consensus       239 --g-~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3l07_A          239 --G-KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  284 (285)
T ss_dssp             --T-EEECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             --C-ceecCccHHHHHhhheEeCCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence              2 899999999999999999999999999999999999999999864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=100.00  E-value=5.6e-89  Score=656.21  Aligned_cols=272  Identities=34%  Similarity=0.670  Sum_probs=264.6

Q ss_pred             eeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 017184           85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI  164 (375)
Q Consensus        85 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I  164 (375)
                      ++||||++|++|++++++++++|    |++|+||+|+||+||+|..|+++|.|+|+++|| ++.++||++++|+||++.|
T Consensus         2 ~ildGk~~a~~i~~~~~~~v~~l----~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I   76 (276)
T 3ngx_A            2 KILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRI   76 (276)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999988    789999999999999999999999999999999 9999999999999999999


Q ss_pred             HHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCE
Q 017184          165 SVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKR  244 (375)
Q Consensus       165 ~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~  244 (375)
                      ++||+|++||||+||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||.|++++|++|+  ++||+
T Consensus        77 ~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~--l~Gk~  152 (276)
T 3ngx_A           77 DDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENT  152 (276)
T ss_dssp             HHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT--CCSCE
T ss_pred             HHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC--cCCCE
Confidence            999999999999999999999999999999999999999999999999987  67899999999999999999  99999


Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      |+|||||++||+|+|++|+++||+||+|||+|+++++++++|||||+|+|+|++|+++|+|+|++|||+|+|+ ++    
T Consensus       153 vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~-~~----  227 (276)
T 3ngx_A          153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY-VN----  227 (276)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE-ET----
T ss_pred             EEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc-cC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 44    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~  372 (375)
                       | |++|||||+++.++|++||||||||||||++|||+|++++++++.
T Consensus       228 -g-kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~~~~  273 (276)
T 3ngx_A          228 -D-KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQK  273 (276)
T ss_dssp             -T-EEECSBCHHHHHTTSSEECCTTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -C-ceeccccHHHHhhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence             3 899999999999999999999999999999999999999998654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=100.00  E-value=1.9e-88  Score=653.98  Aligned_cols=276  Identities=45%  Similarity=0.794  Sum_probs=268.8

Q ss_pred             ceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 017184           84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH  163 (375)
Q Consensus        84 a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~  163 (375)
                      +++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.
T Consensus         3 a~iidGk~ia~~i~~~~~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~   81 (281)
T 2c2x_A            3 AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNET   81 (281)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred             CEEeeHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            579999999999999999999999877 7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCC
Q 017184          164 ISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK  243 (375)
Q Consensus       164 I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK  243 (375)
                      |++||+|++||||+||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||.|++++|++|+++++||
T Consensus        82 i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk  159 (281)
T 2c2x_A           82 IDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGA  159 (281)
T ss_dssp             HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999987  57899999999999999999999999


Q ss_pred             EEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA  321 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~  321 (375)
                      +|+|||+|++||+|++++|+++  |||||+|||+|++|.+++++|||||+|+|+|++|+++|+|+|++|||+|+|+.++ 
T Consensus       160 ~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r~~~-  238 (281)
T 2c2x_A          160 HVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD-  238 (281)
T ss_dssp             EEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEEETT-
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCCCCC-
Confidence            9999999999999999999999  9999999999999999999999999999999999999999999999999999764 


Q ss_pred             CCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHH
Q 017184          322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR  370 (375)
Q Consensus       322 ~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~  370 (375)
                          |  ++|||| +++.++|++||||||||||||++|||+|+++++++
T Consensus       239 ----g--lvGDVd-~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~  280 (281)
T 2c2x_A          239 ----G--LVGDVH-PDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER  280 (281)
T ss_dssp             ----E--EEESBC-GGGGGTCSEEECSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             ----C--ccCccc-cchhhheeeecCCCCCccHHHHHHHHHHHHHHHHh
Confidence                3  999999 99999999999999999999999999999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=100.00  E-value=3.4e-74  Score=564.78  Aligned_cols=270  Identities=29%  Similarity=0.398  Sum_probs=251.2

Q ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhHhccC-CCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 017184           82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIG-VVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEV  160 (375)
Q Consensus        82 m~a~ildGk~la~~i~~~lk~~v~~l~~~~g-~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el  160 (375)
                      |++++||||++|++|++++++++++|+++++ ++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++   +||
T Consensus         3 ~~~~~idgk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~l   79 (320)
T 1edz_A            3 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK---DFL   79 (320)
T ss_dssp             CCCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG---GGH
T ss_pred             CCCEEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh---HHH
Confidence            6678999999999999999999999998744 789999999999999999999999999999999999999965   779


Q ss_pred             HHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCC-------ccccccCCHHHHHHHH
Q 017184          161 LKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGR-------EPLFIPCTPKGCIELL  233 (375)
Q Consensus       161 ~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~-------~~~~~PcT~~gvi~lL  233 (375)
                      ++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|.|+|+.|.+       .++|+||||.|++++|
T Consensus        80 ~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll  159 (320)
T 1edz_A           80 EEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKIL  159 (320)
T ss_dssp             HHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997621       2689999999999999


Q ss_pred             HH---------hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-----------------------C--CCH
Q 017184          234 HR---------YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-----------------------T--KNP  279 (375)
Q Consensus       234 ~~---------~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-----------------------t--~~L  279 (375)
                      ++         ++++++||+|+|||+|++||+|+|++|+++||+||+|+++                       +  .++
T Consensus       160 ~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L  239 (320)
T 1edz_A          160 EFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL  239 (320)
T ss_dssp             HHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHH
T ss_pred             HhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHH
Confidence            99         7999999999999999999999999999999999999553                       3  689


Q ss_pred             HhhccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHH
Q 017184          280 EEITRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIA  358 (375)
Q Consensus       280 ~~~l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a  358 (375)
                      ++++++|||||+|+|+|++ |+.+|+|+|++|||+|+++              |+| +++.+++++||||   |||||++
T Consensus       240 ~e~l~~ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r--------------D~d-~~v~~~a~~itPv---VGpmT~a  301 (320)
T 1edz_A          240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTK--------------NFS-DDVKEKASLYVPM---TGKVTIA  301 (320)
T ss_dssp             HHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC--------------CBC-GGGGTTEEEEESC---CHHHHHH
T ss_pred             HHHhccCCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc--------------ccc-hhHHhhCCeeCCC---ccHHHHH
Confidence            9999999999999999998 9999999999999999875              333 4678899999998   9999999


Q ss_pred             HHHHHHHHHHHHHh
Q 017184          359 MLLSNTLTSAKRVH  372 (375)
Q Consensus       359 mLl~N~v~a~~~~~  372 (375)
                      |||+|+++++++.+
T Consensus       302 ~Ll~n~~~a~~~~~  315 (320)
T 1edz_A          302 MLLRNMLRLVRNVE  315 (320)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=99.96  E-value=2.2e-29  Score=239.56  Aligned_cols=220  Identities=18%  Similarity=0.213  Sum_probs=180.3

Q ss_pred             eCCCcchHHHHH-HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcc-c
Q 017184          122 VGDRKDSATYVR-NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSME-K  199 (375)
Q Consensus       122 vG~d~aS~~Yv~-~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~-K  199 (375)
                      +| +|-+++|-. ..+++|+++|+++.|..|+  +++++|.+.|+.++ +++++|++||+|||.++  ..+++.++|. |
T Consensus         7 iG-~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~--~~~ld~~~~~A~   80 (271)
T 1nyt_A            7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVL--APINDFINTLNAFF-SAGGKGANVTVPFKEEA--FARADELTERAA   80 (271)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEE--CCTTCHHHHHHHHH-HTTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHCCCCcEEEEEE--cCHHHHHHHHHHHH-hCCCCeEEEccCCHHHH--HHHHhhcCHHHH
Confidence            45 566777766 7899999999999999995  67889999999999 57999999999999744  6788888894 9


Q ss_pred             ccCccccc---hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          200 DVDGFHPL---NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       200 DVDGl~~~---N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++++++.+   +.|++. |+      ++++.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++|+.
T Consensus        81 ~igavNti~~~~~g~l~-G~------ntD~~G~~~~L~~~~~~l~~k~vlViGaGg~-g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A           81 LAGAVNTLMRLEDGRLL-GD------NTDGVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             HHTCCSEEEECTTSCEE-EE------CCHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSH
T ss_pred             HhCCceEEEEcCCCeEE-Ee------CCCHHHHHHHHHhcCcCcCCCEEEEECCcHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            99999876   567774 54      4567999999999999999999999999985 9999999999999999999874


Q ss_pred             CC---HHh--------------hc--cCCcEEEEccCCCCc-----ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecc
Q 017184          277 KN---PEE--------------IT--RQADIIISAVGQPNM-----VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGD  332 (375)
Q Consensus       277 ~~---L~~--------------~l--~~ADIVIsAvG~p~~-----I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GD  332 (375)
                      ..   +.+              .+  .++|+||+++|.+..     ++.++++++.+|+|+.|+|.++       +    
T Consensus       153 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t-------~----  221 (271)
T 1nyt_A          153 SRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT-------P----  221 (271)
T ss_dssp             HHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC-------H----
T ss_pred             HHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCC-------H----
Confidence            22   211              11  379999999996543     6778899999999999998654       2    


Q ss_pred             cchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          333 VCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       333 Vd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                        |...++.+++ +|+.+|.+     ||++|.++++++|++.
T Consensus       222 --~~~~a~~~G~-~~~~~G~~-----mLv~Q~~~af~~w~g~  255 (271)
T 1nyt_A          222 --FLAWCEQRGS-KRNADGLG-----MLVAQAAHAFLLWHGV  255 (271)
T ss_dssp             --HHHHHHHTTC-CEEECTHH-----HHHHHHHHHHHHHHSS
T ss_pred             --HHHHHHHcCC-CeecCCHH-----HHHHHHHHHHHHHhCC
Confidence              3344666776 43667765     9999999999999985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=99.95  E-value=2.8e-28  Score=233.42  Aligned_cols=219  Identities=18%  Similarity=0.212  Sum_probs=179.5

Q ss_pred             EeCCCcchHHHHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          121 LVGDRKDSATYVRNK-KKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       121 ~vG~d~aS~~Yv~~k-~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      .+| +|.+++|-..+ +++|+++|+++.|..|+  +++++|.+.|+.+|++ +++|++||+|+|+++  ..+++.+++ .
T Consensus        16 viG-~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~--~~~~~l~~~i~~l~~~-~~~G~nVtiP~k~~i--~~~~d~~~~~a   89 (287)
T 1nvt_A           16 LIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAFD--VLPENLKYVIDGAKAL-GIVGFNVTIPHKIEI--MKYLDEIDKDA   89 (287)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCGGGGGGHHHHHHHH-TCCEEEECTTSTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--cCHHHHHHHHHHHHhC-CCCEEEEccCCHHHH--HHHHHhcCHHH
Confidence            356 68888998887 89999999999999994  7889999999999975 899999999999865  567778888 6


Q ss_pred             cccCccccc--hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          199 KDVDGFHPL--NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       199 KDVDGl~~~--N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++++++++  +.|++. |+      ++|+.|+++.|++++++++||+++|+|+|++ |++++..|++.| +|++++|+.
T Consensus        90 ~~igavnt~~~~~g~l~-g~------nTd~~G~~~~L~~~~~~l~~k~vlV~GaGgi-G~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A           90 QLIGAVNTIKIEDGKAI-GY------NTDGIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             HHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSH
T ss_pred             HHhCceeeEEeeCCEEE-Ee------cCCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHCC-CEEEEECCH
Confidence            999998765  466665 54      3477999999999999999999999999965 999999999999 999999874


Q ss_pred             CC---H---------------------HhhccCCcEEEEccCCCC-------cc-cCCCcCCCcEEEEeeecCCCCCCCC
Q 017184          277 KN---P---------------------EEITRQADIIISAVGQPN-------MV-RGSWIKPGAVIIDVGINPVEDAKSP  324 (375)
Q Consensus       277 ~~---L---------------------~~~l~~ADIVIsAvG~p~-------~I-~~~~vk~gavVIDvgin~~~~~~~~  324 (375)
                      ..   +                     .+.+.++|+||+++|...       .+ +.++++++.+|+|++|+|.++    
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t----  236 (287)
T 1nvt_A          161 EKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET----  236 (287)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC----
T ss_pred             HHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccC----
Confidence            31   1                     234567999999998543       24 678999999999999998654    


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                         ++..      .++.+++.  +.+|++     ||++|.+++++.|++.
T Consensus       237 ---~ll~------~a~~~G~~--~~~Gl~-----mL~~Qa~~af~~w~g~  270 (287)
T 1nvt_A          237 ---VLLK------EAKKVNAK--TINGLG-----MLIYQGAVAFKIWTGV  270 (287)
T ss_dssp             ---HHHH------HHHTTTCE--EECTHH-----HHHHHHHHHHHHHHSS
T ss_pred             ---HHHH------HHHHCCCE--EeCcHH-----HHHHHHHHHHHHHhCC
Confidence               4443      35566763  455665     9999999999999975

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=99.94  E-value=7.9e-28  Score=229.15  Aligned_cols=209  Identities=13%  Similarity=0.149  Sum_probs=171.1

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc---hh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL---NI  209 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~---N~  209 (375)
                      .-+++|+++|+++.|..|+  +++++|.+.|+.++ +++++|++||+|+|++  ...+++.++| .|++++++.+   +.
T Consensus        19 ~hn~~~~~~gl~~~y~~~~--~~~~~l~~~i~~~~-~~~~~G~nVT~P~K~~--v~~~ld~~~~~A~~igavNti~~~~~   93 (272)
T 1p77_A           19 IQNKLAAQTHQTMEYIAKL--GDLDAFEQQLLAFF-EEGAKGCNITSPFKER--AYQLADEYSQRAKLAEACNTLKKLDD   93 (272)
T ss_dssp             HHHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHH-HTTCCEEEECTTCHHH--HHHHCSEECHHHHHHTCCSEEEECTT
T ss_pred             HHHHHHHHCCcCeEEEEEE--cCHHHHHHHHHHHH-hCCCCEEEECcCCHHH--HHHHHhhcCHHHHHhCCceEEEEccC
Confidence            4578999999999999995  67889999999999 4789999999999984  4788899999 5999999877   67


Q ss_pred             hhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---HH------
Q 017184          210 GRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---PE------  280 (375)
Q Consensus       210 G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---L~------  280 (375)
                      |++. |++++      +.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++|+...   +.      
T Consensus        94 g~l~-g~NTD------~~G~~~~L~~~~~~~~~~~vlvlGaGg~-g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~  165 (272)
T 1p77_A           94 GKLY-ADNTD------GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY  165 (272)
T ss_dssp             SCEE-EECCH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG
T ss_pred             CEEE-EecCC------HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc
Confidence            8876 66555      4999999999999999999999999985 999999999999999999997421   21      


Q ss_pred             --------hhc-c-CCcEEEEccCCCCc-----ccCCCcCCCcEEEEeeecCCC-CCCCCCCceeecccchhhhhhhcce
Q 017184          281 --------EIT-R-QADIIISAVGQPNM-----VRGSWIKPGAVIIDVGINPVE-DAKSPRGYRLVGDVCYEEACEVASA  344 (375)
Q Consensus       281 --------~~l-~-~ADIVIsAvG~p~~-----I~~~~vk~gavVIDvgin~~~-~~~~~~g~kl~GDVd~~~v~~~a~~  344 (375)
                              +.+ + ++|+||+++|.+..     ++.++++++.+|+|+.|+|.+ +             .|...++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t-------------~ll~~a~~~G~  232 (272)
T 1p77_A          166 GNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDT-------------PFIALCKSLGL  232 (272)
T ss_dssp             SCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCC-------------HHHHHHHHTTC
T ss_pred             CCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCC-------------HHHHHHHHcCC
Confidence                    122 3 89999999996543     556678889999999998865 3             23344667787


Q ss_pred             eccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          345 ITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       345 iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .|+++|      ..||+.|.+++++.|++.
T Consensus       233 ~~~v~G------~~mLv~Qa~~af~~w~g~  256 (272)
T 1p77_A          233 TNVSDG------FGMLVAQAAHSFHLWRGV  256 (272)
T ss_dssp             CCEECS------HHHHHHHHHHHHHHHHSC
T ss_pred             CEeeCC------HHHHHHHHHHHHHHHhCC
Confidence            656774      559999999999999975

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.94  E-value=4.4e-27  Score=227.38  Aligned_cols=219  Identities=18%  Similarity=0.242  Sum_probs=182.0

Q ss_pred             eCCCcchHHHHHHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-cc
Q 017184          122 VGDRKDSATYVRNKK-KACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EK  199 (375)
Q Consensus       122 vG~d~aS~~Yv~~k~-k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~K  199 (375)
                      +| +|.+++|...+. ++|+++|+++.|..|+  +++++|.+.|+.++. .+++|++||+|+|.++  ..+++.++| .|
T Consensus        29 iG-~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~--~~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A~  102 (297)
T 2egg_A           29 IG-FPVEHSLSPLMHNDAFARLGIPARYHLFS--VEPGQVGAAIAGVRA-LGIAGVNVTIPHKLAV--IPFLDEVDEHAR  102 (297)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCTTCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHcCcCcEEEEEE--cCHHHHHHHHHHHhh-CCCCeEEECCcCHHHH--HHHHHHHhHHHH
Confidence            46 577888888776 8999999999999995  677889999999985 5899999999999976  678899999 59


Q ss_pred             ccCccccc--hhhhcccCCCccccccCCHHHHHHHHHHhC-CCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          200 DVDGFHPL--NIGRLAMRGREPLFIPCTPKGCIELLHRYG-FDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       200 DVDGl~~~--N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~-i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      ++++++.+  +.|++. |+++++      .|+++.|++++ ++++||+|+|||+|++ |++++..|.+.|+ +|++++|+
T Consensus       103 ~iGavNti~~~~g~l~-g~nTd~------~G~~~~l~~~~~~~l~~~~vlVlGaGg~-g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          103 RIGAVNTIINNDGRLV-GYNTDG------LGYVQALEEEMNITLDGKRILVIGAGGG-ARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             HHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTTCSEEEEECSS
T ss_pred             HhCCCCeEECcCCeEe-eccCCH------HHHHHHHHHhCCCCCCCCEEEEECcHHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            99999876  578876 665655      89999999998 8999999999999986 9999999999998 99999986


Q ss_pred             CC--------------------CHHhhccCCcEEEEccCCCC-------cccCCCcCCCcEEEEeeecCCCCCCCCCCce
Q 017184          276 TK--------------------NPEEITRQADIIISAVGQPN-------MVRGSWIKPGAVIIDVGINPVEDAKSPRGYR  328 (375)
Q Consensus       276 t~--------------------~L~~~l~~ADIVIsAvG~p~-------~I~~~~vk~gavVIDvgin~~~~~~~~~g~k  328 (375)
                      ..                    ++.+.++++||||++++.+.       .++.++++++.+|+|+.|+|.++       +
T Consensus       175 ~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T-------~  247 (297)
T 2egg_A          175 VEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLET-------K  247 (297)
T ss_dssp             HHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSC-------H
T ss_pred             HHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCC-------H
Confidence            31                    23455688999999998543       25678999999999999998765       3


Q ss_pred             eecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          329 LVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       329 l~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      |.      ..++.+|+ +.++|      ..||+.|.+++|+.|+|.
T Consensus       248 ll------~~A~~~G~-~~v~G------l~MLv~Qa~~af~~w~g~  280 (297)
T 2egg_A          248 WL------KEAKARGA-RVQNG------VGMLVYQGALAFEKWTGQ  280 (297)
T ss_dssp             HH------HHHHHTTC-EEECS------HHHHHHHHHHHHHHHHSC
T ss_pred             HH------HHHHHCcC-EEECC------HHHHHHHHHHHHHHHhCC
Confidence            33      33556676 45665      459999999999999985

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=99.94  E-value=4.9e-27  Score=226.69  Aligned_cols=217  Identities=17%  Similarity=0.243  Sum_probs=177.8

Q ss_pred             eCCCcchHHHHHHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-cc
Q 017184          122 VGDRKDSATYVRNKK-KACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EK  199 (375)
Q Consensus       122 vG~d~aS~~Yv~~k~-k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~K  199 (375)
                      +| +|-++++--... ++|+++|+++.|..|+  +++++|.+.++.+++ +++.|++|++|+|.  +...+++.++| .+
T Consensus        11 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~v~~l~~-~~~~G~nVTiP~K~--~v~~~ld~ls~~A~   84 (282)
T 3fbt_A           11 IG-EKLGHSHSSYIHKLIFEKVGIKGIYNLFE--VPKEKLKESVDTFKI-IKCGGLNVTIPYKV--EVMKELYEISEKAR   84 (282)
T ss_dssp             EE-SSCCCCHHHHHHHHHHHHHTCCEEEEEEE--CCGGGHHHHHHHHHH-TTCCEEEECTTCTT--GGGGGCSEECHHHH
T ss_pred             EC-CCccccchHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHhc-CCCCEEEEcCCCHH--HHHHHHHhcCHHHH
Confidence            45 466666665554 8899999999999995  677899999999987 68999999999996  66788999999 69


Q ss_pred             ccCccccch--hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          200 DVDGFHPLN--IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       200 DVDGl~~~N--~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      .+++++.+.  -|++. |+++|+      .|+++.|++++++++||+|+|+|+|++ |++++..|.+.|+ +|++++|+.
T Consensus        85 ~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~L~~~~~~~~~k~vlvlGaGGa-araia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A           85 KIGAVNTLKFSREGIS-GFNTDY------IGFGKMLSKFRVEIKNNICVVLGSGGA-ARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             HHTCCCEEEECSSCEE-EECCHH------HHHHHHHHHTTCCCTTSEEEEECSSTT-HHHHHHHHHHTTCSEEEEEESCH
T ss_pred             HcCCcceEEeeCCEEE-eeCCcH------HHHHHHHHHcCCCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCH
Confidence            999987654  36665 666665      899999999999999999999999997 9999999999998 899999874


Q ss_pred             CC---------------HHhhccCCcEEEEccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccc
Q 017184          277 KN---------------PEEITRQADIIISAVGQ---PN----MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVC  334 (375)
Q Consensus       277 ~~---------------L~~~l~~ADIVIsAvG~---p~----~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd  334 (375)
                      ..               +.+ + ++||||++|+.   |+    .++.++++++.+|+|+.|+|.++       .|..   
T Consensus       157 ~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-------~ll~---  224 (282)
T 3fbt_A          157 EKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET-------LFLK---  224 (282)
T ss_dssp             HHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSC-------HHHH---
T ss_pred             HHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCC-------HHHH---
Confidence            22               122 4 89999999963   43    36778899999999999999877       4554   


Q ss_pred             hhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          335 YEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       335 ~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                         .++..|+.  +-+|.+     ||++|.+++++.|+|.
T Consensus       225 ---~A~~~G~~--~~~Gl~-----MLv~Qa~~~f~lwtg~  254 (282)
T 3fbt_A          225 ---YARESGVK--AVNGLY-----MLVSQAAASEEIWNDI  254 (282)
T ss_dssp             ---HHHHTTCE--EECSHH-----HHHHHHHHHHHHHHTC
T ss_pred             ---HHHHCcCe--EeCcHH-----HHHHHHHHHHHHHcCC
Confidence               35567763  456676     9999999999999985

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.94  E-value=2.1e-26  Score=217.15  Aligned_cols=217  Identities=18%  Similarity=0.235  Sum_probs=180.4

Q ss_pred             EeCCCcchHHHH-HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          121 LVGDRKDSATYV-RNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       121 ~vG~d~aS~~Yv-~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      .+| +|.+++|- ...+++|+++|+++.|..+  +++++++.+.++.++.+  ++|++||+|+|.++  ..+++.+++ .
T Consensus         6 ~~G-~pi~hs~sp~~h~~~~~~~g~~~~y~~~--~~~~~~l~~~i~~l~~~--~~G~~vt~P~k~~i--~~~~~~l~~~a   78 (263)
T 2d5c_A            6 VLG-HPVAHSLSPAMHAFALESLGLEGSYEAW--DTPLEALPGRLKEVRRA--FRGVNLTLPLKEAA--LAHLDWVSPEA   78 (263)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEE--ECCGGGHHHHHHHHHHH--CSEEEECTTCTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHhcccc--CceEEEcccCHHHH--HHHHHHHhHHH
Confidence            356 67788888 8899999999999999998  47889999999999986  99999999999966  667888999 9


Q ss_pred             cccCccccc--hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          199 KDVDGFHPL--NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       199 KDVDGl~~~--N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+++|++.+  +.|++. |++++.      .|++..|++++++++| +++|||.|++ |++++..|.+.|++|++++++.
T Consensus        79 ~~~gavn~i~~~~g~~~-g~ntd~------~g~~~~l~~~~~~l~~-~v~iiG~G~~-g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A           79 QRIGAVNTVLQVEGRLF-GFNTDA------PGFLEALKAGGIPLKG-PALVLGAGGA-GRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             HHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHTTCCCCS-CEEEECCSHH-HHHHHHHHHHTTCCEEEECSSH
T ss_pred             HHhCCCCcEEccCCeEE-EeCCCH------HHHHHHHHHhCCCCCC-eEEEECCcHH-HHHHHHHHHHCCCEEEEEECCH
Confidence            999999887  778775 544444      7999999999999999 9999999995 9999999999999999999874


Q ss_pred             C--------------CHHhhccCCcEEEEccCCC------CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchh
Q 017184          277 K--------------NPEEITRQADIIISAVGQP------NMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYE  336 (375)
Q Consensus       277 ~--------------~L~~~l~~ADIVIsAvG~p------~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~  336 (375)
                      .              ++.+. +++|+||++++..      ..++.+++++|++|+|+++++.++       ++.      
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t-------~l~------  215 (263)
T 2d5c_A          150 QRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWT-------RFL------  215 (263)
T ss_dssp             HHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSC-------HHH------
T ss_pred             HHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCccc-------HHH------
Confidence            2              34555 8899999999965      345667899999999999986543       222      


Q ss_pred             hhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          337 EACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       337 ~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      +..+..++ ++++|      ..||+.|.+.+++.|++.
T Consensus       216 ~~a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  246 (263)
T 2d5c_A          216 REAKAKGL-KVQTG------LPMLAWQGALAFRLWTGL  246 (263)
T ss_dssp             HHHHHTTC-EEECS------HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCcC-EEECc------HHHHHHHHHHHHHHHhCC
Confidence            33445565 56766      669999999999999975

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.93  E-value=5.3e-26  Score=216.64  Aligned_cols=218  Identities=19%  Similarity=0.270  Sum_probs=179.9

Q ss_pred             EeCCCcchHHHHHH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          121 LVGDRKDSATYVRN-KKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       121 ~vG~d~aS~~Yv~~-k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      ++| +|.+++|... .+++|+++|+++.|..|+  +++++|.+.|+.++. ++++|++||+|+|+++  ..+++.+++ .
T Consensus        17 liG-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~-~~~~G~nvtiP~k~~i--~~~ld~l~~~A   90 (275)
T 2hk9_A           17 VIG-FPVKHSLSPVFQNALIRYAGLNAVYLAFE--INPEELKKAFEGFKA-LKVKGINVTVPFKEEI--IPLLDYVEDTA   90 (275)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCSEEEEEEE--CCGGGHHHHHHHHHH-HTCCEEEECTTSTTTT--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHHHHhhHHH
Confidence            678 9999999974 559999999999999995  788999999999996 6899999999999865  567888888 5


Q ss_pred             cccCccccc--hhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          199 KDVDGFHPL--NIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       199 KDVDGl~~~--N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |++++++.+  +.|++. |+      ++|..|++..|++++++++||+++|||+|++ |++++..|.+.|++|++++|+.
T Consensus        91 ~~~gavnti~~~~g~~~-g~------nTd~~G~~~~l~~~~~~~~~~~v~iiGaG~~-g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A           91 KEIGAVNTVKFENGKAY-GY------NTDWIGFLKSLKSLIPEVKEKSILVLGAGGA-SRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             HHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHCTTGGGSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSH
T ss_pred             HHhCCcceEEeeCCEEE-ee------cCCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            999999776  456664 43      4567999999999999999999999999986 9999999999999999999873


Q ss_pred             C---------------CHHhhccCCcEEEEccCCCC------cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccch
Q 017184          277 K---------------NPEEITRQADIIISAVGQPN------MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCY  335 (375)
Q Consensus       277 ~---------------~L~~~l~~ADIVIsAvG~p~------~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~  335 (375)
                      .               ++.+.++++|+||++++...      .++.+++++|.+|+|+++  ..+       ++.     
T Consensus       163 ~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~--~~t-------~ll-----  228 (275)
T 2hk9_A          163 EKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY--KET-------KLL-----  228 (275)
T ss_dssp             HHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS--SCC-------HHH-----
T ss_pred             HHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC--ChH-------HHH-----
Confidence            1               56677889999999998542      355678999999999998  332       332     


Q ss_pred             hhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          336 EEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       336 ~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                       +..+..++ +.+||      ..||+.|.++++++|++.
T Consensus       229 -~~a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  259 (275)
T 2hk9_A          229 -KKAKEKGA-KLLDG------LPMLLWQGIEAFKIWNGC  259 (275)
T ss_dssp             -HHHHHTTC-EEECS------HHHHHHHHHHHHHHHHCC
T ss_pred             -HHHHHCcC-EEECC------HHHHHHHHHHHHHHHHCC
Confidence             22344554 45776      669999999999999985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=99.93  E-value=9.7e-26  Score=220.70  Aligned_cols=221  Identities=18%  Similarity=0.276  Sum_probs=178.0

Q ss_pred             EeCCCcchHHHHHHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          121 LVGDRKDSATYVRNKK-KACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       121 ~vG~d~aS~~Yv~~k~-k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      ++| +|-++++--... .+|+++|+++.|..|+  +++++|.+.++.++. +++.|++|++|+|.  +...+++.++| .
T Consensus        42 viG-~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~--v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~lD~ls~~A  115 (315)
T 3tnl_A           42 LIA-TPIRHSLSPTMHNEAFAKLGLDYVYLAFE--VGDKELKDVVQGFRA-MNLRGWNVSMPNKT--NIHKYLDKLSPAA  115 (315)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCCEEEEEEE--CCHHHHHHHHHHHHH-TTCCEEEECTTSTT--TGGGGCSEECHHH
T ss_pred             EEC-CCccccccHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHhc-CCCCEEEEcCCChH--HHHHHHHhcCHHH
Confidence            356 455666555444 5899999999999995  788999999999987 68999999999997  55788999999 6


Q ss_pred             cccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          199 KDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       199 KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      +.+.+++.+ + -|++. |+++|+      .|+++.|++++++++||+|+|+|+|++ |++++..|.+.|+ +|++++|+
T Consensus       116 ~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~l~gk~~lVlGaGG~-g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          116 ELVGAVNTVVNDDGVLT-GHITDG------TGYMRALKEAGHDIIGKKMTICGAGGA-ATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             HHHTCCSEEEEETTEEE-EECCHH------HHHHHHHHHTTCCCTTSEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECS
T ss_pred             HHhCccceEEecCCEEE-EeCCCH------HHHHHHHHHcCCCccCCEEEEECCChH-HHHHHHHHHHCCCCEEEEEECC
Confidence            999988654 3 35555 665555      999999999999999999999999986 9999999999998 89999997


Q ss_pred             CC-----------------------------CHHhhccCCcEEEEccCC---CC----cc-cCCCcCCCcEEEEeeecCC
Q 017184          276 TK-----------------------------NPEEITRQADIIISAVGQ---PN----MV-RGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       276 t~-----------------------------~L~~~l~~ADIVIsAvG~---p~----~I-~~~~vk~gavVIDvgin~~  318 (375)
                      .+                             ++.+.+.++||||++++.   |+    .+ +.++++++.+|+|+.|+|.
T Consensus       188 ~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~  267 (315)
T 3tnl_A          188 DDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPT  267 (315)
T ss_dssp             STTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSS
T ss_pred             CchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCC
Confidence            21                             123446789999999873   33    35 6788999999999999998


Q ss_pred             CCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       319 ~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      ++       +|..      .++..|+  ++-+|.+     ||++|.+++++.|+|.+
T Consensus       268 ~T-------~ll~------~A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtG~~  304 (315)
T 3tnl_A          268 KT-------RLLE------IAEEQGC--QTLNGLG-----MMLWQGAKAFEIWTHKE  304 (315)
T ss_dssp             SC-------HHHH------HHHHTTC--EEECSHH-----HHHHHHHHHHHHHHSSC
T ss_pred             CC-------HHHH------HHHHCCC--eEeCcHH-----HHHHHHHHHHHHHhCCC
Confidence            77       4554      3556777  3456777     99999999999999863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.91  E-value=1.1e-24  Score=209.56  Aligned_cols=209  Identities=16%  Similarity=0.192  Sum_probs=166.3

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h-hh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N-IG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N-~G  210 (375)
                      .-+.+++++|+++.|..|+  +.+++|.+.++.+.. .++.|++|++|+|.  +...+++.++| .+-+.+++.+ + -|
T Consensus        18 ~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAVNTv~~~~g   92 (277)
T 3don_A           18 MHHANFQSLNLENTYEAIN--VPVNQFQDIKKIISE-KSIDGFNVTIPHKE--RIIPYLDDINEQAKSVGAVNTVLVKDG   92 (277)
T ss_dssp             HHHHHHHHTTCCCEEEEEE--CCGGGGGGHHHHHHH-TTCSEEEECTTCTT--TTGGGCSEECHHHHHHTCCCEEEEETT
T ss_pred             HHHHHHHHcCcCcEEEEEE--cCHHHHHHHHHHHhh-CCCCEEEECcCCHH--HHHHHhhhCCHHHHHhCceeEEEecCC
Confidence            3467899999999999986  667778888888876 47999999999997  44678888888 7777776433 3 35


Q ss_pred             hcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC------------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK------------  277 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~------------  277 (375)
                      ++. |+|+|+      .|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+..            
T Consensus        93 ~l~-G~NTD~------~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~  164 (277)
T 3don_A           93 KWI-GYNTDG------IGYVNGLKQIYEGIEDAYILILGAGGA-SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKI  164 (277)
T ss_dssp             EEE-EECCHH------HHHHHHHHHHSTTGGGCCEEEECCSHH-HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEE
T ss_pred             EEE-EECChH------HHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccc
Confidence            554 665655      999999999999999999999999996 9999999999998 8999998742            


Q ss_pred             ---CHHhhccCCcEEEEccCC---CC---cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccC
Q 017184          278 ---NPEEITRQADIIISAVGQ---PN---MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPV  348 (375)
Q Consensus       278 ---~L~~~l~~ADIVIsAvG~---p~---~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPV  348 (375)
                         ++.+.++++||||++++.   |+   .++.++++++.+|+|+.|+|.++       +|.      ..++..|+  ++
T Consensus       165 ~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T-------~ll------~~A~~~G~--~~  229 (277)
T 3don_A          165 NLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKT-------PIL------IEAEQRGN--PI  229 (277)
T ss_dssp             CHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSC-------HHH------HHHHHTTC--CE
T ss_pred             cHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCC-------HHH------HHHHHCcC--EE
Confidence               234557899999999874   32   35778999999999999998765       333      23556676  34


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          349 PGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       349 PGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      -+|.+     ||+.|.+++++.|+|.+
T Consensus       230 ~~Gl~-----MLv~Qa~~~f~lwtg~~  251 (277)
T 3don_A          230 YNGLD-----MFVHQGAESFKIWTNLE  251 (277)
T ss_dssp             ECTHH-----HHHHHHHHHHHHHHSSC
T ss_pred             eCCHH-----HHHHHHHHHHHHHcCCC
Confidence            56677     99999999999999863

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=99.90  E-value=5.2e-24  Score=205.21  Aligned_cols=211  Identities=14%  Similarity=0.157  Sum_probs=169.0

Q ss_pred             HHHHHHHHcCCeEEEEeCCC---CCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h
Q 017184          134 NKKKACQSVGINSFEVHLPE---DTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N  208 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~---~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N  208 (375)
                      .-+.+++++|+++.|..|+-   +++.++|.+.++.+.. +++.|++|++|+|.  +...+++.++| .+.+.+++.+ +
T Consensus        22 ~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~lD~l~~~A~~iGAVNTv~~   98 (283)
T 3jyo_A           22 MHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY-LGFNGLNITHPYKQ--AVLPLLDEVSEQATQLGAVNTVVI   98 (283)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHH-TTCCEEEECTTCTT--TTGGGSSEECHHHHHHTCCCEEEE
T ss_pred             HHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhh-CCCCEEEECcccHH--HHHHHhhhCCHHHHHhCcceEEEE
Confidence            44678899999999999842   3556788888888876 57999999999998  44678888888 7777777433 3


Q ss_pred             --hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC--------
Q 017184          209 --IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK--------  277 (375)
Q Consensus       209 --~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~--------  277 (375)
                        -|++. |+++|+      .|+++.|++.+.+++||+|+|+|+|++ |++++..|...|+ +|++++|+..        
T Consensus        99 ~~~g~l~-G~NTD~------~G~~~~l~~~~~~l~~k~vlVlGaGG~-g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~  170 (283)
T 3jyo_A           99 DATGHTT-GHNTDV------SGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_dssp             CTTSCEE-EECHHH------HHHHHHHHHHCTTCCCSEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH
T ss_pred             CCCCeEE-EecCCH------HHHHHHHHHhCcCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence              34554 666665      899999999999999999999999996 9999999999998 7999988621        


Q ss_pred             ----------------CHHhhccCCcEEEEccCC---CC---cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccch
Q 017184          278 ----------------NPEEITRQADIIISAVGQ---PN---MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCY  335 (375)
Q Consensus       278 ----------------~L~~~l~~ADIVIsAvG~---p~---~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~  335 (375)
                                      ++.+.++++|+||++++.   |+   .++.++++++.+|+|+.|+|.++       .|..    
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-------~ll~----  239 (283)
T 3jyo_A          171 INNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-------ELLK----  239 (283)
T ss_dssp             HHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSC-------HHHH----
T ss_pred             HHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCC-------HHHH----
Confidence                            455667789999999973   32   36788999999999999999876       4554    


Q ss_pred             hhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          336 EEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       336 ~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                        .++..|+  ++-+|.+     ||++|.+++++.|+|.+
T Consensus       240 --~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  270 (283)
T 3jyo_A          240 --AARALGC--ETLDGTR-----MAIHQAVDAFRLFTGLE  270 (283)
T ss_dssp             --HHHHHTC--CEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             --HHHHCcC--eEeCcHH-----HHHHHHHHHHHHHcCCC
Confidence              2556676  4556777     99999999999999863

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=99.90  E-value=4.4e-24  Score=204.80  Aligned_cols=210  Identities=12%  Similarity=0.124  Sum_probs=163.4

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h-hh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N-IG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N-~G  210 (375)
                      .-+.+++++|+++.|..|+  +..++|.+.++.+.. +++.|++|++|++.  +...+++.++| .+-+.+++.+ + -|
T Consensus        20 ~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAvNTv~~~~g   94 (272)
T 3pwz_A           20 IHGLFAQASNQQLEYGAIE--GSLDDFEAQVLQFRS-EGGKGMNITAPFKL--RAFELADRRSERAQLARAANALKFEDG   94 (272)
T ss_dssp             HHHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCCSEEEEETT
T ss_pred             HHHHHHHHcCCCcEEEEEE--cCHHHHHHHHHHHhh-CCCCEEEECchhHH--HHHHHHhhCCHHHHHhCccceEEccCC
Confidence            4467899999999999986  556788888988875 57999999999986  45667777777 6777666432 2 34


Q ss_pred             hcccCCCccccccCCHHHHHHH-HHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCCCHH--------
Q 017184          211 RLAMRGREPLFIPCTPKGCIEL-LHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTKNPE--------  280 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~l-L~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~~L~--------  280 (375)
                      ++. |+++|+      .|+++. |++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+....+        
T Consensus        95 ~l~-G~NTD~------~G~~~~lL~~~~~~l~~k~~lvlGaGg~-~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~  166 (272)
T 3pwz_A           95 RIV-AENFDG------IGLLRDIEENLGEPLRNRRVLLLGAGGA-VRGALLPFLQAGPSELVIANRDMAKALALRNELDH  166 (272)
T ss_dssp             EEE-EECCHH------HHHHHHHHTTSCCCCTTSEEEEECCSHH-HHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC
T ss_pred             eEE-EecCCH------HHHHHHHHHHcCCCccCCEEEEECccHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc
Confidence            454 655555      899996 998999999999999999996 9999999999996 9999998642211        


Q ss_pred             ---------hhc-cCCcEEEEccCCC---C--cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhccee
Q 017184          281 ---------EIT-RQADIIISAVGQP---N--MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAI  345 (375)
Q Consensus       281 ---------~~l-~~ADIVIsAvG~p---~--~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~i  345 (375)
                               +.- .++|+||++++..   +  .++.++++++.+|+|+.|+|.++       +|..      .++..|+.
T Consensus       167 ~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T-------~ll~------~A~~~G~~  233 (272)
T 3pwz_A          167 SRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLT-------PFLR------LAREQGQA  233 (272)
T ss_dssp             TTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSC-------HHHH------HHHHHSCC
T ss_pred             CCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCC-------HHHH------HHHHCCCC
Confidence                     111 6899999999742   1  36788999999999999999776       3443      35566752


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          346 TPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       346 TPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                       .+-+|.+     ||++|.+++++.|+|.+
T Consensus       234 -~~~~Gl~-----ML~~Qa~~~f~lwtg~~  257 (272)
T 3pwz_A          234 -RLADGVG-----MLVEQAAEAFAWWRGVR  257 (272)
T ss_dssp             -EEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             -EEECCHH-----HHHHHHHHHHHHHhCCC
Confidence             1446676     99999999999999863

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=99.90  E-value=4.6e-24  Score=205.49  Aligned_cols=210  Identities=11%  Similarity=0.104  Sum_probs=164.7

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc--h-h
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL--N-I  209 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~--N-~  209 (375)
                      .-+.+++++|+++.|..|+  +..++|.+.++.+.. +++.|++|++|++.  +...+++.++| .+-+.+++.+  + -
T Consensus        26 ~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~ld~l~~~A~~iGAVNTv~~~~~  100 (281)
T 3o8q_A           26 IHTLFARQTQQSMIYTAQC--VPVDGFTEAAKHFFA-QGGRGCNVTVPFKE--EAYRFADRLTERARLAGAVNTLKKLDD  100 (281)
T ss_dssp             HHHHHHHHTTCCEEEEEEC--CCTTCHHHHHHHHHH-TTCCEEEECTTSHH--HHHHHCSEECHHHHHHTCCSEEEECTT
T ss_pred             HHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECCccHH--HHHHHHhhcCHHHHhhCeeeEEEEcCC
Confidence            4467899999999999986  566788889988875 57999999999986  45667777777 6777776433  2 3


Q ss_pred             hhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCCCH---------
Q 017184          210 GRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTKNP---------  279 (375)
Q Consensus       210 G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~~L---------  279 (375)
                      |++. |+++|+      .|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+....         
T Consensus       101 g~l~-G~NTD~------~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~  172 (281)
T 3o8q_A          101 GEIL-GDNTDG------EGLVQDLLAQQVLLKGATILLIGAGGA-ARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA  172 (281)
T ss_dssp             SCEE-EECCHH------HHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG
T ss_pred             CcEE-EEecHH------HHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc
Confidence            5554 665655      999999999999999999999999986 9999999999996 999999874221         


Q ss_pred             ---------HhhccCCcEEEEccCCCC-----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhccee
Q 017184          280 ---------EEITRQADIIISAVGQPN-----MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAI  345 (375)
Q Consensus       280 ---------~~~l~~ADIVIsAvG~p~-----~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~i  345 (375)
                               .+..+++||||++++...     .++.++++++.+|+|+.|+|.++       +|..      .++..|+.
T Consensus       173 ~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T-------~ll~------~A~~~G~~  239 (281)
T 3o8q_A          173 YGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYT-------VFNQ------WARQHGCA  239 (281)
T ss_dssp             GSCEEEEEGGGCCSCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCC-------HHHH------HHHHTTCS
T ss_pred             cCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccC-------HHHH------HHHHCCCC
Confidence                     122268999999998531     36778999999999999999766       4443      24556652


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          346 TPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       346 TPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                       .+-+|.+     ||++|.+++++.|+|.+
T Consensus       240 -~~~~Gl~-----Mlv~Qa~~~f~lwtg~~  263 (281)
T 3o8q_A          240 -QAIDGLG-----MLVGQAAESFMLWRGLR  263 (281)
T ss_dssp             -EEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             -EEECcHH-----HHHHHHHHHHHHHhCCC
Confidence             1445676     99999999999999863

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=99.89  E-value=1.1e-23  Score=205.98  Aligned_cols=209  Identities=18%  Similarity=0.237  Sum_probs=165.0

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCcccc-ch-hh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHP-LN-IG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~-~N-~G  210 (375)
                      .-+.+++++|+++.|..|+  +.+++|.+.++.+.. .++.|++|++|+|.  +...+++.++| .+-+.+++. ++ -|
T Consensus        49 ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~lD~ls~~A~~iGAVNTi~~~~g  123 (312)
T 3t4e_A           49 MQNKALEKAGLPYTYMAFE--VDNTTFASAIEGLKA-LKMRGTGVSMPNKQ--LACEYVDELTPAAKLVGAINTIVNDDG  123 (312)
T ss_dssp             HHHHHHHHHTCSEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTSHH--HHGGGCSEECHHHHHHTCCSEEEEETT
T ss_pred             HHHHHHHHcCCCcEEEeEe--cCHHHHHHHHHHHhh-CCCCEEEECchhHH--HHHHHhhhcCHHHHHhCceeEEEecCC
Confidence            5568899999999999986  566788888888876 47999999999986  44556677777 677766643 23 35


Q ss_pred             hcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC------------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK------------  277 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~------------  277 (375)
                      ++. |+++|+      .|+++.|++.+++++||+|+|+|+|++ |++++..|.+.|+ +|+|++|+.+            
T Consensus       124 ~l~-G~NTD~------~Gf~~~L~~~~~~l~gk~~lVlGAGGa-araia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~  195 (312)
T 3t4e_A          124 YLR-GYNTDG------TGHIRAIKESGFDMRGKTMVLLGAGGA-ATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV  195 (312)
T ss_dssp             EEE-EECHHH------HHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHH
T ss_pred             EEE-EeCCcH------HHHHHHHHhcCCCcCCCEEEEECcCHH-HHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHh
Confidence            554 666665      899999999999999999999999997 9999999999998 8999999821            


Q ss_pred             --------------CH---HhhccCCcEEEEccCC---CC---cc--cCCCcCCCcEEEEeeecCCCCCCCCCCceeecc
Q 017184          278 --------------NP---EEITRQADIIISAVGQ---PN---MV--RGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGD  332 (375)
Q Consensus       278 --------------~L---~~~l~~ADIVIsAvG~---p~---~I--~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GD  332 (375)
                                    ++   .+.+.++||||++++.   |.   .+  +.++++++.+|+|+.|+|.++       +|.. 
T Consensus       196 ~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-------~ll~-  267 (312)
T 3t4e_A          196 NENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMT-------KLLQ-  267 (312)
T ss_dssp             HHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSC-------HHHH-
T ss_pred             hhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCC-------HHHH-
Confidence                          22   3346689999999874   22   12  567899999999999999877       4554 


Q ss_pred             cchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          333 VCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       333 Vd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                           .++..|+  ++-+|.+     ||++|.+++++.|+|.+
T Consensus       268 -----~A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtg~~  298 (312)
T 3t4e_A          268 -----QAQQAGC--KTIDGYG-----MLLWQGAEQFELWTGKA  298 (312)
T ss_dssp             -----HHHHTTC--EEECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             -----HHHHCCC--eEECcHH-----HHHHHHHHHHHHHhCCC
Confidence                 3556776  3456777     99999999999999863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.85  E-value=6.2e-22  Score=189.98  Aligned_cols=201  Identities=14%  Similarity=0.155  Sum_probs=151.9

Q ss_pred             HHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h
Q 017184          135 KKKAC----QSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N  208 (375)
Q Consensus       135 k~k~a----~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N  208 (375)
                      -+.++    +++|+++.|..++-    +++.+.++.+.. +++.|++|++|++.  +...+++.++| .+-+.+++.+ +
T Consensus        22 hn~~f~~~~~~~gl~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAVNTi~~   94 (269)
T 3phh_A           22 HNACFLTFQKELRFLGHYHPILL----PLESHIKSEFLH-LGLSGANVTLPFKE--RAFQVCDKIKGIALECGAVNTLVL   94 (269)
T ss_dssp             HHHHHHHHHHHHSSEEEEEEEEC----CSSSCHHHHHHH-TTEEEEEECTTCHH--HHHHHSSEECGGGGGTTCCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEeeEEh----hhHHHHHHHHhh-CCCCEEEEccccHH--HHHHHHhhcCHHHHHhCceeEEEe
Confidence            35667    99999999999863    445556666655 67999999999986  55667777877 6676666432 2


Q ss_pred             -hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhh-----
Q 017184          209 -IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI-----  282 (375)
Q Consensus       209 -~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~-----  282 (375)
                       -|++. |+|+|+      .|+++.|++.+    ||+|+|||+|++ |++++..|.+.|++|++++|+....++.     
T Consensus        95 ~~g~l~-G~NTD~------~Gf~~~L~~~~----~k~vlvlGaGGa-araia~~L~~~G~~v~V~nRt~~ka~~la~~~~  162 (269)
T 3phh_A           95 ENDELV-GYNTDA------LGFYLSLKQKN----YQNALILGAGGS-AKALACELKKQGLQVSVLNRSSRGLDFFQRLGC  162 (269)
T ss_dssp             ETTEEE-EECCHH------HHHHHHCC-------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTC
T ss_pred             eCCEEE-EecChH------HHHHHHHHHcC----CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence             35554 665555      89999998754    999999999997 9999999999999999999986554332     


Q ss_pred             -------ccCCcEEEEccCCC---C-cccCC----CcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceecc
Q 017184          283 -------TRQADIIISAVGQP---N-MVRGS----WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITP  347 (375)
Q Consensus       283 -------l~~ADIVIsAvG~p---~-~I~~~----~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTP  347 (375)
                             +.++|+||++++..   + .++.+    .++++.+|+|+.|+| ++       +|..      .++..|+  +
T Consensus       163 ~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~T-------~ll~------~A~~~G~--~  226 (269)
T 3phh_A          163 DCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LT-------PFLS------LAKELKT--P  226 (269)
T ss_dssp             EEESSCCSSCCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-CC-------HHHH------HHHHTTC--C
T ss_pred             eEecHHHhccCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-ch-------HHHH------HHHHCcC--E
Confidence                   23799999998742   2 35666    678899999999999 77       3333      3556676  4


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          348 VPGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       348 VPGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      +-+|.+     ||++|.+++++.|+|.+
T Consensus       227 ~~~Gl~-----MLv~Qa~~~f~lw~g~~  249 (269)
T 3phh_A          227 FQDGKD-----MLIYQAALSFEKFSASQ  249 (269)
T ss_dssp             EECSHH-----HHHHHHHHHHHHHTTTS
T ss_pred             EECCHH-----HHHHHHHHHHHHHhCCC
Confidence            556677     99999999999999863

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=99.84  E-value=2.9e-21  Score=185.04  Aligned_cols=217  Identities=15%  Similarity=0.236  Sum_probs=164.4

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-c
Q 017184          120 ILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-E  198 (375)
Q Consensus       120 I~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~  198 (375)
                      -.+|+. .|.+=. .-+.+++++|+++.|..|+    .++|.+.++.+.. .++.|++|++|++..+  ..+++.+++ .
T Consensus        11 ~viG~P-hS~SP~-~hn~~~~~~gl~~~Y~~~~----~~~l~~~~~~~~~-~~~~G~nVTiP~K~~i--~~~~d~~~~~A   81 (271)
T 1npy_A           11 SLSGRP-SNFGTT-FHNYLYDKLGLNFIYKAFT----TQDIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDEIHPSA   81 (271)
T ss_dssp             EECSSC-CSHHHH-HHHHHHHHHTCCEEEEEEC----CSCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHH
T ss_pred             EEECCC-CcccHH-HHHHHHHHcCCCcEEEeec----hhhHHHHHHHhcc-CCCCeEEECcCCHHHH--HHHHHHhhHHH
Confidence            457876 666655 5588999999999999997    2456666666654 3589999999999844  567788888 7


Q ss_pred             cccCccccc-h-hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          199 KDVDGFHPL-N-IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       199 KDVDGl~~~-N-~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      +.+.+++.+ | .|++. |+++++      .|+++.|++.+++ .+|+|+|||+|++ |++++..|...|+ +|+|++|+
T Consensus        82 ~~iGAvNTi~~~~g~l~-g~NTD~------~G~~~~l~~~~~~-~~~~vlvlGaGga-arav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A           82 QAIESVNTIVNDNGFLR-AYNTDY------IAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             HTTTCCCEEEEETTEEE-EECHHH------HHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSC
T ss_pred             HHhCCCCceECcCCEEE-eecCCH------HHHHHHHHHhCCC-CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            777777443 3 45554 655555      8999999988775 7899999999997 9999999999997 79999997


Q ss_pred             CCC---HHh----------hccCCcEEEEccCCCC--------c-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeeccc
Q 017184          276 TKN---PEE----------ITRQADIIISAVGQPN--------M-VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV  333 (375)
Q Consensus       276 t~~---L~~----------~l~~ADIVIsAvG~p~--------~-I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDV  333 (375)
                      ...   +.+          .+.++|+||++++...        . ++.++++++.+|+|+.|+|.++       .|..  
T Consensus       153 ~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T-------~ll~--  223 (271)
T 1npy_A          153 VKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-------PFIR--  223 (271)
T ss_dssp             HHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-------HHHH--
T ss_pred             HHHHHHHHHHcCCccchhhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCC-------HHHH--
Confidence            321   110          1367999999998532        1 3445778899999999998765       3433  


Q ss_pred             chhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          334 CYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       334 d~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                          .++..|+.  +-+|.+     ||+.|.+++++.|+|.
T Consensus       224 ----~A~~~G~~--~i~Gl~-----MLv~Qa~~~f~lw~g~  253 (271)
T 1npy_A          224 ----YAQARGKQ--TISGAA-----VIVLQAVEQFELYTHQ  253 (271)
T ss_dssp             ----HHHHTTCE--EECHHH-----HHHHHHHHHHHHHHSC
T ss_pred             ----HHHHCCCE--EECCHH-----HHHHHHHHHHHHHhCC
Confidence                35667763  445666     9999999999999985

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.83  E-value=6.2e-21  Score=181.04  Aligned_cols=200  Identities=13%  Similarity=0.104  Sum_probs=154.6

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccchhhhc
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPLNIGRL  212 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N~G~l  212 (375)
                      .-+.+++++|+++.|..|+  +++++|.+.++.+.  +++.|++|++|+|.  +...+++. +| .+-+.+++.+-. + 
T Consensus        18 ~hn~~~~~~gl~~~Y~~~~--v~~~~l~~~~~~~~--~~~~G~nVT~P~K~--~v~~~~d~-~~~A~~iGAvNTi~~-~-   88 (253)
T 3u62_A           18 LYNEYFKRAGMNHSYGMEE--IPPESFDTEIRRIL--EEYDGFNATIPHKE--RVMRYVEP-SEDAQRIKAVNCVFR-G-   88 (253)
T ss_dssp             HHHHHHHHHTCCCEEEEEE--CCGGGHHHHHHHHH--HHCSEEEECTTCTT--GGGGGSEE-CHHHHHHTCCCEEET-T-
T ss_pred             HHHHHHHHcCCCCEEEeEe--cCHHHHHHHHHHHh--hCCCceeecCChHH--HHHHHhCC-CHHHHHcCcceEeec-C-
Confidence            4467899999999999986  67788999999987  67999999999997  44567777 77 666666543211 1 


Q ss_pred             ccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------
Q 017184          213 AMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------  276 (375)
Q Consensus       213 ~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------  276 (375)
                       .|+++|+      .|+++.|++.  +++| +++|||+|++ |++++..|.+.|+ +|++++|+.               
T Consensus        89 -~G~NTD~------~G~~~~l~~~--~~~~-~vliiGaGg~-a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~  157 (253)
T 3u62_A           89 -KGYNTDW------VGVVKSLEGV--EVKE-PVVVVGAGGA-ARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSL  157 (253)
T ss_dssp             -EEECCHH------HHHHHHTTTC--CCCS-SEEEECCSHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEG
T ss_pred             -EEEcchH------HHHHHHHHhc--CCCC-eEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCH
Confidence             4666666      8999999876  5689 9999999997 9999999999998 899999863               


Q ss_pred             CCHHhhccCCcEEEEccCC---CC--cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCC
Q 017184          277 KNPEEITRQADIIISAVGQ---PN--MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGG  351 (375)
Q Consensus       277 ~~L~~~l~~ADIVIsAvG~---p~--~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGG  351 (375)
                      .++.+.++++|+||++++.   |+  .++.++++++.+|+|+.|+  ++       .+.-     . ++..++-.-+|| 
T Consensus       158 ~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~--~T-------~ll~-----~-A~~~G~~~~~~G-  221 (253)
T 3u62_A          158 DQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF--DT-------PLVV-----K-ARKLGVKHIIKG-  221 (253)
T ss_dssp             GGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS--CC-------HHHH-----H-HHHHTCSEEECT-
T ss_pred             HHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC--Cc-------HHHH-----H-HHHCCCcEEECC-
Confidence            2345667899999999863   43  3566789999999999998  44       3332     2 344564202554 


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhcc
Q 017184          352 VGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       352 VGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .+     ||+.|.+.+++.|+|.
T Consensus       222 l~-----MLv~Qa~~af~~wtg~  239 (253)
T 3u62_A          222 NL-----MFYYQAMENLKIWGIY  239 (253)
T ss_dssp             HH-----HHHHHHHHHHHHTTCC
T ss_pred             HH-----HHHHHHHHHHHHHhCC
Confidence            44     9999999999999986

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.55  E-value=2.7e-15  Score=155.10  Aligned_cols=206  Identities=18%  Similarity=0.254  Sum_probs=143.6

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCccccc-h---
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGFHPL-N---  208 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~-N---  208 (375)
                      .-+.+|+++|+++.|..++-    +++.+.++.+.. +++.|++|++|++.  +...+++.+++ .+.+.+++.+ |   
T Consensus       252 ~hn~~f~~~gl~~~Y~~~~~----~~l~~~~~~~~~-~~~~G~nVTiP~K~--~i~~~ld~~~~~A~~iGAvNti~~~~~  324 (523)
T 2o7s_A          252 VHNQAFKSVDFNGVYVHLLV----DNLVSFLQAYSS-SDFAGFSCTIPHKE--AALQCCDEVDPLAKSIGAVNTILRRKS  324 (523)
T ss_dssp             HHHHHHHHTTCSEEEEEEEC----SCHHHHHHHTCS-TTEEEEEECTTCHH--HHHHHCSEECHHHHHHTCCSEEEECTT
T ss_pred             HHHHHHHHcCCCcEEEeEEc----chHHHHHHHHhc-CCCCEEEECCCCHH--HHHHHhcccCHHHHHhCCCeEEEEecC
Confidence            45789999999999999863    267777777764 57999999999985  34556677777 7777777443 3   


Q ss_pred             hhhcccCCCccccccCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          209 IGRLAMRGREPLFIPCTPKGCIELLHRY-------------GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       209 ~G~l~~g~~~~~~~PcT~~gvi~lL~~~-------------~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|++. |+++++      .|++..|+..             ..+++||+++|+|+|++ |++++..|+++|++|++++|+
T Consensus       325 ~gk~~-g~nTD~------~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGi-g~aia~~L~~~G~~V~i~~R~  396 (523)
T 2o7s_A          325 DGKLL-GYNTDC------IGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGA-GKALAYGAKEKGAKVVIANRT  396 (523)
T ss_dssp             TCCEE-EECCHH------HHHHHHHHHHC-------------------CEEEECCSHH-HHHHHHHHHHHCC-CEEEESS
T ss_pred             CCeEE-EEcCCH------HHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECC
Confidence            35554 554544      7888888764             13688999999999986 999999999999999999886


Q ss_pred             CCC-----------------HHh-hccCCcEEEEccCC---C----CcccCCCcCCCcEEEEeeecCCCCCCCCCCceee
Q 017184          276 TKN-----------------PEE-ITRQADIIISAVGQ---P----NMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLV  330 (375)
Q Consensus       276 t~~-----------------L~~-~l~~ADIVIsAvG~---p----~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~  330 (375)
                      ...                 +.+ .....|+||+++|.   |    ..+...++++...++|+-|++.++       +++
T Consensus       397 ~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T-------~ll  469 (523)
T 2o7s_A          397 YERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRIT-------RLL  469 (523)
T ss_dssp             HHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSC-------HHH
T ss_pred             HHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccC-------HHH
Confidence            321                 111 12347999999984   2    124445666678999998887654       233


Q ss_pred             cccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          331 GDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       331 GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      -     . ++..|+.  +-+|.+     ||++|.+.+++.|+|.
T Consensus       470 ~-----~-a~~~G~~--~i~Gl~-----mlv~Qa~~~f~lwtg~  500 (523)
T 2o7s_A          470 R-----E-AEESGAI--TVSGSE-----MFVRQAYEQFEIFTGL  500 (523)
T ss_dssp             H-----H-HHTTTCE--EECHHH-----HHHHHHHHHHHHHHSS
T ss_pred             H-----H-HHHCCCE--EECcHH-----HHHHHHHHHHHHHhCC
Confidence            2     1 2334654  345555     9999999999999985

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.43  E-value=4.9e-13  Score=136.19  Aligned_cols=166  Identities=19%  Similarity=0.372  Sum_probs=127.4

Q ss_pred             HHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEE---eCCCCCCCCHHHHHhhCCcccccCccccch
Q 017184          133 RNKKKACQSV-GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILV---QLPLPCHIDEQSILNAVSMEKDVDGFHPLN  208 (375)
Q Consensus       133 ~~k~k~a~~~-GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlV---qlPLp~~i~~~~i~~~I~p~KDVDGl~~~N  208 (375)
                      .+|...++++ ||++.|+.|+. -+.+||.+.++.+.  +++.|++|   +.|++.     ++++.++.  -|+  ++++
T Consensus        91 h~ka~lf~~~gGid~~yi~ldv-~d~de~~~~v~~l~--~~f~GinvED~T~P~k~-----~il~~l~~--avN--t~vf  158 (439)
T 2dvm_A           91 EGKALLFKRFGGVDAFPIMIKE-QEPNKFIDIVKAIA--PTFGGINLEDIASPKCF-----YILERLRE--ELD--IPVF  158 (439)
T ss_dssp             HHHHHHHHHHHCCEEEEEECSC-CSHHHHHHHHHHTG--GGCSEEEECSCCTTHHH-----HHHHHHHH--HCS--SCEE
T ss_pred             HHHHHHHHHhCCCCCeeeeeec-CCHHHHHHHHHHhC--ccCcEEEEEeCCCchHH-----HHHHHHHH--hcC--EEEE
Confidence            3455569999 89999999963 16789999999997  68999999   999874     56666643  111  2221


Q ss_pred             --hhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEc----CC----
Q 017184          209 --IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVH----SR----  275 (375)
Q Consensus       209 --~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~h----s~----  275 (375)
                        -|+.. |       +.+..|++..|+..+.++++++|+|+|+|++ |++++.+|...|+   +|++++    |+    
T Consensus       159 ~dD~~gt-g-------ntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA-g~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~  229 (439)
T 2dvm_A          159 HDDQQGT-A-------AVVLAGLLNALKVVGKKISEITLALFGAGAA-GFATLRILTEAGVKPENVRVVELVNGKPRILT  229 (439)
T ss_dssp             EHHHHHH-H-------HHHHHHHHHHHHHHTCCTTTCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEETTEEEECC
T ss_pred             eCCCcEE-e-------ehHHHHHHHHHHHhCCCccCCEEEEECccHH-HHHHHHHHHHcCCCcCeEEEEEccCCCcCccc
Confidence              12221 1       3444899999999999999999999999997 9999999999998   799999    65    


Q ss_pred             C-CC-----------------------HHhhccCCcEEEEccCCC-CcccCCC---cCCCcEEEEeeecCCCC
Q 017184          276 T-KN-----------------------PEEITRQADIIISAVGQP-NMVRGSW---IKPGAVIIDVGINPVED  320 (375)
Q Consensus       276 t-~~-----------------------L~~~l~~ADIVIsAvG~p-~~I~~~~---vk~gavVIDvgin~~~~  320 (375)
                      . ++                       +.+.++++|+||++++.| +++++++   +.++.+|+|+ +||.++
T Consensus       230 ~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDL-ynP~~t  301 (439)
T 2dvm_A          230 SDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPL-ANPVPE  301 (439)
T ss_dssp             TTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEEC-CSSSCS
T ss_pred             cccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcCCCCEEEEC-CCCCCc
Confidence            1 12                       345567899999999985 7776544   5678899999 999765

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.19  E-value=1.2e-11  Score=117.54  Aligned_cols=212  Identities=17%  Similarity=0.076  Sum_probs=142.4

Q ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCc
Q 017184          139 CQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGRE  218 (375)
Q Consensus       139 a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~  218 (375)
                      +-+.|++..|..++  ++.++|.+.++.+--.....|++++.|+....+...+.+.++-.+ .--+.++|.-.+. .  .
T Consensus        22 ~~~~g~~~~y~~~~--v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~-~~~~gavnt~~~~-~--~   95 (287)
T 1lu9_A           22 GYDGGADHITGYGN--VTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVK-KRFFGPFRVSCML-D--S   95 (287)
T ss_dssp             HHHTTCSEEEEESS--CCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHH-HHCBTTBCCEEEE-C--S
T ss_pred             eeccCcceEeccCC--cCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHH-HhcCCCeEEEEec-C--C
Confidence            33799999999884  778899999999744456889999999866666665555544322 1113455543221 1  1


Q ss_pred             cccccCCHHHHHHHHHHh-CCCCCCCEEEEEc-CCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------
Q 017184          219 PLFIPCTPKGCIELLHRY-GFDIKGKRAVVIG-RSNIVGMPAALLLQREDATVSIVHSRTK-------------------  277 (375)
Q Consensus       219 ~~~~PcT~~gvi~lL~~~-~i~l~GK~vvVIG-rs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------  277 (375)
                      .+ .+++..|+++.|++. +.+++||+++|+| .|+ +|+.++..|+++|++|++++|+..                   
T Consensus        96 ~G-~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGG-iG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~  173 (287)
T 1lu9_A           96 NG-SNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTA  173 (287)
T ss_dssp             TT-HHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEE
T ss_pred             Cc-CCchHHHHHHHHHHhhccCCCCCEEEEECCCcH-HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence            12 256679999999988 8899999999999 566 599999999999999999987621                   


Q ss_pred             -C------HHhhccCCcEEEEccCCCC---cc-cCCCcCCCcEEEEeeecCCC----CCCCCCCceeeccc-chhhhhhh
Q 017184          278 -N------PEEITRQADIIISAVGQPN---MV-RGSWIKPGAVIIDVGINPVE----DAKSPRGYRLVGDV-CYEEACEV  341 (375)
Q Consensus       278 -~------L~~~l~~ADIVIsAvG~p~---~I-~~~~vk~gavVIDvgin~~~----~~~~~~g~kl~GDV-d~~~v~~~  341 (375)
                       |      +.+.++++|+||+++|...   .+ +.+.+++...++|+-+.+..    +       .++... .... .+.
T Consensus       174 ~D~~~~~~~~~~~~~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~~i~~t-------~ll~~a~~~~~-~~~  245 (287)
T 1lu9_A          174 AETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGI-------DATDKGKEYGG-KRA  245 (287)
T ss_dssp             EECCSHHHHHHHTTTCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSCSBTTS-------CTTCEEEEETT-EEE
T ss_pred             ecCCCHHHHHHHHHhCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhHHhhcc-------hHHhhccccCC-Ccc
Confidence             1      2455677899999997421   12 33445778899999887654    2       122100 0000 022


Q ss_pred             cceeccCCCCccHHHHHHHHHHHHHHHHHHhcc
Q 017184          342 ASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF  374 (375)
Q Consensus       342 a~~iTPVPGGVGp~T~amLl~N~v~a~~~~~~~  374 (375)
                      .++.  +-+|.+     ||++|...+ +.|.+.
T Consensus       246 ~G~~--~v~gl~-----ml~~qa~~a-~~~~~~  270 (287)
T 1lu9_A          246 FGAL--GIGGLK-----LKLHRACIA-KLFESS  270 (287)
T ss_dssp             ECHH--HHHHHH-----HHHHHHHHH-HHTSCS
T ss_pred             ccce--eECchH-----HHHHHHHHH-HHhhCC
Confidence            3332  334555     999999888 777753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.09  E-value=4.3e-10  Score=107.75  Aligned_cols=120  Identities=23%  Similarity=0.378  Sum_probs=94.1

Q ss_pred             HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCC
Q 017184          234 HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       234 ~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      +..+.++.||++.|||.|++ |+.++..|...|++|++++++.                .++.+.++++|+||++++. +
T Consensus       149 ~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~  226 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRT-GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-M  226 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-C
T ss_pred             HhcCCCCCCCEEEEEcccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-h
Confidence            44678999999999999886 9999999999999999998752                2466778999999999996 5


Q ss_pred             cccC---CCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhccee---cc-CCCCccHHHHHHHHHHHHHHHH
Q 017184          298 MVRG---SWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAI---TP-VPGGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       298 ~I~~---~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~i---TP-VPGGVGp~T~amLl~N~v~a~~  369 (375)
                      +++.   +.+|+|+++||++..+.             +++++. .+..+..   .| +||+++|.+.+.|+.|.+..+-
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~-------------~~~~~~-a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~~l  291 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPG-------------GTDFKY-AEKQGIKALLAPGLPGIVAPKTAGQILANVLSKLL  291 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTC-------------SBCHHH-HHHHTCEEEECCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCC-------------CcCHHH-HHHCCCEEEECCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            6644   45799999999997542             233433 3333432   36 8899999999999999887654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.97  E-value=1.4e-09  Score=92.61  Aligned_cols=92  Identities=18%  Similarity=0.390  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------CCHHhhccCC
Q 017184          224 CTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------KNPEEITRQA  286 (375)
Q Consensus       224 cT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------~~L~~~l~~A  286 (375)
                      +.+...++.++...    |++++|||.|.+ |+.++..|...|++|++++++.                 .++.+.++++
T Consensus         7 sv~~~a~~~~~~~~----~~~v~iiG~G~i-G~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRKNG----GNKILLVGNGML-ASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHHHC----CCEEEEECCSHH-HHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTC
T ss_pred             cHHHHHHHHHHhcc----CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCC
Confidence            44566777777764    999999999885 9999999999999999998752                 3567778899


Q ss_pred             cEEEEccCCCCc-ccCCCcCCCcEEEEeeecCCCC
Q 017184          287 DIIISAVGQPNM-VRGSWIKPGAVIIDVGINPVED  320 (375)
Q Consensus       287 DIVIsAvG~p~~-I~~~~vk~gavVIDvgin~~~~  320 (375)
                      |+||+++|.++. ++.+|+++|.+++|++.++..+
T Consensus        82 Divi~at~~~~~~~~~~~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           82 DVIITATSSKTPIVEERSLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             SEEEECSCCSSCSBCGGGCCTTCEEEECCSSCSBC
T ss_pred             CEEEEeCCCCCcEeeHHHcCCCCEEEEccCCccCC
Confidence            999999998765 6789999999999999876433

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.96  E-value=2.4e-09  Score=102.30  Aligned_cols=128  Identities=22%  Similarity=0.353  Sum_probs=96.8

Q ss_pred             CHHHHHH-HHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------CCHHhhccCCc
Q 017184          225 TPKGCIE-LLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------KNPEEITRQAD  287 (375)
Q Consensus       225 T~~gvi~-lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------~~L~~~l~~AD  287 (375)
                      ++..++. +|...+.++.||+|.|||.|++ |+.++..|...|++|++++++.                .++.+.++++|
T Consensus       137 vae~a~~~~l~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aD  215 (293)
T 3d4o_A          137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVD  215 (293)
T ss_dssp             HHHHHHHHHHHHCSSCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCS
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCC
Confidence            4444443 5566788999999999999986 9999999999999999998752                24567789999


Q ss_pred             EEEEccCCCCcccCC---CcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcce----eccCCCCccHHHHHHH
Q 017184          288 IIISAVGQPNMVRGS---WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASA----ITPVPGGVGPMTIAML  360 (375)
Q Consensus       288 IVIsAvG~p~~I~~~---~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~----iTPVPGGVGp~T~amL  360 (375)
                      +||.+++. +++..+   .+|+|+++||++..+.             +++++. .+..+.    +.-.|+.++|.|.+.+
T Consensus       216 vVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~-------------~~~~~~-a~~~Gv~~~~~~~l~~~v~p~~a~~~  280 (293)
T 3d4o_A          216 VCINTIPA-LVVTANVLAEMPSHTFVIDLASKPG-------------GTDFRY-AEKRGIKALLVPGLPGIVAPKTAGRI  280 (293)
T ss_dssp             EEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTC-------------SBCHHH-HHHHTCEEEECCCHHHHHCHHHHHHH
T ss_pred             EEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCC-------------CCCHHH-HHHCCCEEEECCCCCcccCHHHHHHH
Confidence            99999975 555443   4689999999997542             344533 333332    2456788899999999


Q ss_pred             HHHHHHHH
Q 017184          361 LSNTLTSA  368 (375)
Q Consensus       361 l~N~v~a~  368 (375)
                      +.|.+..+
T Consensus       281 ~~~~~~~~  288 (293)
T 3d4o_A          281 LADVLVKL  288 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.81  E-value=7.8e-09  Score=105.14  Aligned_cols=94  Identities=19%  Similarity=0.319  Sum_probs=80.0

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCc
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQAD  287 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~AD  287 (375)
                      ++.|+...+-.+++..+..+.||+|+|+|.|.+ |+++|..|...|++|++++++.             .++.+.+++||
T Consensus       190 ~~Gt~~slldgi~ratg~~L~GktVgIiG~G~I-G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~AD  268 (436)
T 3h9u_A          190 LYGCRESLVDGIKRATDVMIAGKTACVCGYGDV-GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAH  268 (436)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCS
T ss_pred             cccchHHHHHHHHHhcCCcccCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCC
Confidence            345655555555666899999999999999996 9999999999999999998752             36889999999


Q ss_pred             EEEEccCCCCcccCCCc---CCCcEEEEeee
Q 017184          288 IIISAVGQPNMVRGSWI---KPGAVIIDVGI  315 (375)
Q Consensus       288 IVIsAvG~p~~I~~~~v---k~gavVIDvgi  315 (375)
                      |||.+.|..++|+.+++   |+|++|||+|-
T Consensus       269 VVilt~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          269 IFVTTTGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             EEEECSSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             EEEECCCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            99999999899988776   89999999993

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.71  E-value=7.7e-08  Score=96.49  Aligned_cols=169  Identities=23%  Similarity=0.323  Sum_probs=121.8

Q ss_pred             HHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhh
Q 017184          132 VRNKKKACQS-VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG  210 (375)
Q Consensus       132 v~~k~k~a~~-~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G  210 (375)
                      ...|...++. -||++..+.+... +.+|+++.++.+-  |.+.||++.- + ..-+--++++....+-|+.-||.--.|
T Consensus        96 ~egK~~Lf~~~agid~~pi~ldv~-~~dE~v~~vk~~~--p~f~~i~lED-~-~~p~af~il~r~r~~~~Ipvf~DDiqG  170 (388)
T 1vl6_A           96 MEGKAFLFKAFADIDAFPICLSES-EEEKIISIVKSLE--PSFGGINLED-I-GAPKCFRILQRLSEEMNIPVFHDDQQG  170 (388)
T ss_dssp             HHHHHHHHHHHHCCEEEEEECSCC-CHHHHHHHHHHTG--GGCSEEEECS-C-CTTHHHHHHHHHHHHCSSCEEEHHHHH
T ss_pred             hhCHHHHHHhccCCceEeEEeCCC-CHHHHHHHHHHcC--CcceEeCHhh-c-CCHHHHHHHHHhhhhcCcceecccccc
Confidence            4567777765 6899999998753 6889999999876  5677875431 1 011222333333333344444422222


Q ss_pred             hcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC----C---------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR----T---------  276 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~----t---------  276 (375)
                      .          .-.+..|++..++-.+.+++..+|+|+|+|.+ |..++.+|...|+ +|++|+|+    .         
T Consensus       171 T----------asV~lAal~~A~~i~g~~l~~~kVVv~GAGaA-G~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~  239 (388)
T 1vl6_A          171 T----------AVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNE  239 (388)
T ss_dssp             H----------HHHHHHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSH
T ss_pred             H----------HHHHHHHHHHHHHHhCCCCCCcEEEEECCCHH-HHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCH
Confidence            2          22334667777787888999999999999886 9999999999998 89999887    1         


Q ss_pred             ---------------CCHHhhccCCcEEEEccCCCCcccCCCcC---CCcEEEEeeecCC
Q 017184          277 ---------------KNPEEITRQADIIISAVGQPNMVRGSWIK---PGAVIIDVGINPV  318 (375)
Q Consensus       277 ---------------~~L~~~l~~ADIVIsAvG~p~~I~~~~vk---~gavVIDvgin~~  318 (375)
                                     .+|.+.++.||++|.+++ |++++++|++   ++.+|+|+. ||.
T Consensus       240 ~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~Ma~~pIIfalS-NPt  297 (388)
T 1vl6_A          240 YHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALA-NPV  297 (388)
T ss_dssp             HHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECC-SSS
T ss_pred             HHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHHHhcCCCCEEEEcC-CCC
Confidence                           248899999999999998 8999999885   577999998 443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.68  E-value=2.8e-08  Score=101.53  Aligned_cols=87  Identities=20%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEccCCC
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsAvG~p  296 (375)
                      -.+.+..+..+.||+|+|+|.|.+ |+.+|..|...|++|+++++.             ..++.+.+++|||||+++|.+
T Consensus       235 dgI~Ratg~~L~GKTVgVIG~G~I-Gr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~  313 (464)
T 3n58_A          235 DGIRRGTDVMMAGKVAVVCGYGDV-GKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNK  313 (464)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECCSSS
T ss_pred             HHHHHhcCCcccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECCCCc
Confidence            334445789999999999999995 999999999999999999763             236889999999999999999


Q ss_pred             CcccCCCc---CCCcEEEEeeecC
Q 017184          297 NMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       297 ~~I~~~~v---k~gavVIDvgin~  317 (375)
                      ++|+.+.+   |+|+++|++|...
T Consensus       314 ~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          314 DVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             SSBCHHHHHHSCTTEEEEECSSST
T ss_pred             cccCHHHHhcCCCCeEEEEcCCCC
Confidence            99987765   9999999999643

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.63  E-value=6.7e-08  Score=96.83  Aligned_cols=134  Identities=19%  Similarity=0.239  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhCC----------CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------
Q 017184          227 KGCIELLHRYGF----------DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------  277 (375)
Q Consensus       227 ~gvi~lL~~~~i----------~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------  277 (375)
                      .+++...++++-          .+.+++|+|||.|.+ |..++.+|...|++|++++++..                   
T Consensus       159 ~Av~~aa~~l~~~~~~l~~~~~~v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~  237 (381)
T 3p2y_A          159 KAVLLGASLSTRFVPMLTTAAGTVKPASALVLGVGVA-GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDA  237 (381)
T ss_dssp             HHHHHHHHHCSSCSSCEECSSCEECCCEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC---
T ss_pred             HHHHHHHHHhhhhhhhhhcccCCcCCCEEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence            355555555432          258999999999875 99999999999999999977531                   


Q ss_pred             --------------------CHHhhccCCcEEEEccCC-----CCcccCCCc---CCCcEEEEeeecCCCC-CCCCCCce
Q 017184          278 --------------------NPEEITRQADIIISAVGQ-----PNMVRGSWI---KPGAVIIDVGINPVED-AKSPRGYR  328 (375)
Q Consensus       278 --------------------~L~~~l~~ADIVIsAvG~-----p~~I~~~~v---k~gavVIDvgin~~~~-~~~~~g~k  328 (375)
                                          ++.+.+++|||||+++..     |++|+.+++   |+|+++||+++.+--+ .++..+  
T Consensus       238 ~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~--  315 (381)
T 3p2y_A          238 AGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPG--  315 (381)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTT--
T ss_pred             cccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCC--
Confidence                                345788999999998743     457888775   8899999999875210 000001  


Q ss_pred             eecccchhhhhhh-cceeccCCCCccHHHHHHHHHHHHHHHH
Q 017184          329 LVGDVCYEEACEV-ASAITPVPGGVGPMTIAMLLSNTLTSAK  369 (375)
Q Consensus       329 l~GDVd~~~v~~~-a~~iTPVPGGVGp~T~amLl~N~v~a~~  369 (375)
                         .+ |.. ..+ .-.++-.||-+ |.|...++.|.+..+-
T Consensus       316 ---~~-~~~-~gV~~~~v~nlP~~v-p~tAS~~~s~~l~~~l  351 (381)
T 3p2y_A          316 ---RT-IVH-HGVTITSPLNLPATM-PEHASELYAKNVTALL  351 (381)
T ss_dssp             ---CE-EEE-TTEEEECCSCTGGGS-HHHHHHHHHHHHHHHH
T ss_pred             ---Ce-EEE-CCEEEEeeCCCchhh-HHHHHHHHHHHHHHHH
Confidence               00 100 011 12345678888 9999988888776553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.61  E-value=7.8e-08  Score=97.72  Aligned_cols=93  Identities=22%  Similarity=0.349  Sum_probs=77.6

Q ss_pred             CHHHHHHHHH-HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEE
Q 017184          225 TPKGCIELLH-RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIII  290 (375)
Q Consensus       225 T~~gvi~lL~-~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVI  290 (375)
                      |...++.-+. ..+..+.||+|+|+|.|.+ |+.++..|...|++|++++++             ..++.+.+++|||||
T Consensus       202 t~~s~~~gi~rat~~~L~GktV~ViG~G~I-Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi  280 (435)
T 3gvp_A          202 CRESILDGLKRTTDMMFGGKQVVVCGYGEV-GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVI  280 (435)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEE
T ss_pred             hHHHHHHHHHHhhCceecCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEE
Confidence            4445555444 4688999999999999995 999999999999999999864             246889999999999


Q ss_pred             EccCCCCcccCCCc---CCCcEEEEeeecCC
Q 017184          291 SAVGQPNMVRGSWI---KPGAVIIDVGINPV  318 (375)
Q Consensus       291 sAvG~p~~I~~~~v---k~gavVIDvgin~~  318 (375)
                      .++|.+++|+.+++   |+|+++|++|....
T Consensus       281 ~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             ECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            99999999987655   99999999996543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.53  E-value=3e-07  Score=92.79  Aligned_cols=134  Identities=20%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhCC----------CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------
Q 017184          227 KGCIELLHRYGF----------DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------  277 (375)
Q Consensus       227 ~gvi~lL~~~~i----------~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------  277 (375)
                      .+++.-.++++-          .+.+.+|+|||.|.+ |..++.+|...||.|++++++..                   
T Consensus       165 ~Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~  243 (405)
T 4dio_A          165 QAVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGVA-GLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEE  243 (405)
T ss_dssp             HHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC--
T ss_pred             HHHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeeccccc
Confidence            356666655542          468899999999875 99999999999999999976521                   


Q ss_pred             ------------------------CHHhhccCCcEEEEccC-----CCCcccCCCc---CCCcEEEEeeecCCCC-CCCC
Q 017184          278 ------------------------NPEEITRQADIIISAVG-----QPNMVRGSWI---KPGAVIIDVGINPVED-AKSP  324 (375)
Q Consensus       278 ------------------------~L~~~l~~ADIVIsAvG-----~p~~I~~~~v---k~gavVIDvgin~~~~-~~~~  324 (375)
                                              ++.+.+++|||||+++.     .|.+|+.+++   |+|++|||+++.+--+ .++.
T Consensus       244 ~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~  323 (405)
T 4dio_A          244 FKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAE  323 (405)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCC
T ss_pred             ccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccC
Confidence                                    34567789999999874     3557888765   7899999999865210 0000


Q ss_pred             CCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       325 ~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      .+..+.    ...+  ..-.++-.||-+ |.|...++.|.+..+
T Consensus       324 ~~~~~~----~~GV--~~~gv~nlP~~v-p~tAS~~ls~~~~~~  360 (405)
T 4dio_A          324 AGKVTE----VGGV--RIVGHLNVAGRI-AASASLLYAKNLVTF  360 (405)
T ss_dssp             TTEEEE----ETTE--EEEECSSGGGGG-HHHHHHHHHHHHHHH
T ss_pred             CCCeEE----ECCE--EEEEeCCCCccC-HHHHHHHHHHHHHHH
Confidence            110110    0010  112244568877 899888888776544

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.46  E-value=2.8e-07  Score=95.09  Aligned_cols=83  Identities=25%  Similarity=0.318  Sum_probs=72.1

Q ss_pred             HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCCcccC
Q 017184          235 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPNMVRG  301 (375)
Q Consensus       235 ~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~~I~~  301 (375)
                      ..+..+.||+|+|||.|.+ |+.+|..|...|++|++++++.             .++++.+++||+||++++.+++|+.
T Consensus       270 ~~g~~L~GktVgIIG~G~I-G~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~  348 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDV-GKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINH  348 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCH
T ss_pred             ccccccCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCH
Confidence            4678899999999999985 9999999999999999998753             2578899999999999988888877


Q ss_pred             CC---cCCCcEEEEeeecCC
Q 017184          302 SW---IKPGAVIIDVGINPV  318 (375)
Q Consensus       302 ~~---vk~gavVIDvgin~~  318 (375)
                      +.   +|+|+++||+|.-..
T Consensus       349 ~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          349 DHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             HHHHHCCTTEEEEECSSSSC
T ss_pred             HHHhhCCCCcEEEEcCCCcc
Confidence            55   599999999996544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.40  E-value=4e-07  Score=93.64  Aligned_cols=84  Identities=24%  Similarity=0.315  Sum_probs=72.0

Q ss_pred             HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCCccc
Q 017184          234 HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPNMVR  300 (375)
Q Consensus       234 ~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~~I~  300 (375)
                      +..+..+.||+|+|||.|.+ |+.+|..|...|++|++++++.             .++.+.+++||+||++++.+++|+
T Consensus       249 r~~~~~l~GktVgIIG~G~I-G~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~  327 (479)
T 1v8b_A          249 RATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIK  327 (479)
T ss_dssp             HHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBC
T ss_pred             hccccccCCCEEEEEeeCHH-HHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcC
Confidence            34678999999999999986 9999999999999999998753             257889999999999998888887


Q ss_pred             CC---CcCCCcEEEEeeecCC
Q 017184          301 GS---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~~  318 (375)
                      .+   .+|+|+++||+|....
T Consensus       328 ~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          328 LEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             HHHHTTCCTTCEEEECSSTTT
T ss_pred             HHHHhhcCCCcEEEEeCCCCc
Confidence            64   4689999999996543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.40  E-value=2e-07  Score=91.84  Aligned_cols=153  Identities=21%  Similarity=0.254  Sum_probs=99.3

Q ss_pred             HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEE-eCCCCCCCCHHHHHhhCCcccccCc-c----ccchhh
Q 017184          138 ACQSVGI-NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILV-QLPLPCHIDEQSILNAVSMEKDVDG-F----HPLNIG  210 (375)
Q Consensus       138 ~a~~~GI-~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlV-qlPLp~~i~~~~i~~~I~p~KDVDG-l----~~~N~G  210 (375)
                      .+.+.|. .+.|.++..  + .++++.+.+.    ++.|+.+ ++|++.+     .+..+++...+-| +    ...|+.
T Consensus        82 ~~~~~g~~~~~y~~~~~--~-~~l~~~l~~~----gi~~~~~etvp~k~~-----~~~~l~~~s~~Ag~~a~~~gA~nt~  149 (361)
T 1pjc_A           82 DLMQKDQLLFTYLHLAA--A-RELTEQLMRV----GLTAIAYETVELPNR-----SLPLLTPMSIIAGRLSVQFGARFLE  149 (361)
T ss_dssp             GGCCTTCEEEECCCGGG--C-HHHHHHHHHH----TCEEEEGGGCCCTTS-----CCTTTHHHHHHHHHHHHHHHHHHTS
T ss_pred             HhhcCCCEEEEEecccc--C-HHHHHHHHHc----CCeEEEEeeeEcccC-----CccccCcchHHHHHHHHHHHHHHHh
Confidence            3445775 777777653  3 4677777665    5889998 8998642     2223333222222 1    234444


Q ss_pred             hcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------  277 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------  277 (375)
                      +...|   .+|.          +... ..+++++|+|+|+|++ |+.++..|...|++|++++++..             
T Consensus       150 ~~~~g---~G~~----------l~~l-~~l~~~~VlViGaGgv-G~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~  214 (361)
T 1pjc_A          150 RQQGG---RGVL----------LGGV-PGVKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV  214 (361)
T ss_dssp             GGGTS---CCCC----------TTCB-TTBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS
T ss_pred             hccCC---Ccee----------ccCC-CCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCcee
Confidence            33211   1332          0000 1367899999999775 99999999999999999987521             


Q ss_pred             --------CHHhhccCCcEEEEccCCCC-----ccc---CCCcCCCcEEEEeeecC
Q 017184          278 --------NPEEITRQADIIISAVGQPN-----MVR---GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       278 --------~L~~~l~~ADIVIsAvG~p~-----~I~---~~~vk~gavVIDvgin~  317 (375)
                              ++.+.++.+|+||+++|.|.     ++.   -+.+++|.+++|+++++
T Consensus       215 ~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          215 ELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             EEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             EeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence                    23455678999999998654     233   35678999999999876

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.38  E-value=2.2e-06  Score=84.95  Aligned_cols=78  Identities=27%  Similarity=0.428  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------C------------------------
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------N------------------------  278 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~------------------------  278 (375)
                      ++.|++|+|+|.|.+ |+.++.++...|++|++++++..                .                        
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            678999999999875 99999999999999999986521                0                        


Q ss_pred             ---HHhhccCCcEEEEcc---CC--CCcccCC---CcCCCcEEEEeeecC
Q 017184          279 ---PEEITRQADIIISAV---GQ--PNMVRGS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       279 ---L~~~l~~ADIVIsAv---G~--p~~I~~~---~vk~gavVIDvgin~  317 (375)
                         +.+.++.+|+||.++   |.  |++++.+   .+++|.++||+++++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence               556778999999999   53  4566653   458999999999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.35  E-value=1.4e-06  Score=87.64  Aligned_cols=169  Identities=20%  Similarity=0.308  Sum_probs=121.8

Q ss_pred             HHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhh
Q 017184          132 VRNKKKACQS-VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG  210 (375)
Q Consensus       132 v~~k~k~a~~-~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G  210 (375)
                      ...|...++. -||++.-+.+... +.+|+.+.++.+-  |.+.||++.- + ..-+--++++.....-|+.-||.--.|
T Consensus        92 ~eGK~~Lf~~~agid~~pi~Ldv~-~~dEfv~~v~~~~--p~F~~I~lED-~-~~p~~f~il~~~r~~~~ipvf~DDiqG  166 (398)
T 2a9f_A           92 MEGKAALFKAFAGVDAIPIVLDTK-DTEEIISIVKALA--PTFGGINLED-I-SAPRCFEIEQRLIKECHIPVFHDDQHG  166 (398)
T ss_dssp             HHHHHHHHHHHSSCEEEEEECCCC-CHHHHHHHHHHHG--GGCSEEEECS-C-CTTHHHHHHHHHHHHCSSCEEEHHHHH
T ss_pred             hhCHHHHHHhccCCceeeeEeCCC-CHHHHHHHHHHcC--CceeEecccc-C-CChHHHHHHHHhhhcCCcceecchhhh
Confidence            4567777765 6899999999754 5889999999887  6788877641 1 011222333333222234444422222


Q ss_pred             hcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------
Q 017184          211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------  275 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------  275 (375)
                      .          .-.+-.|.+..++-.|.+++.-+|||+|+|.+ |..++.+|...|+ +|++|+++              
T Consensus       167 T----------a~V~lAall~al~l~g~~l~d~kVVi~GAGaA-G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~  235 (398)
T 2a9f_A          167 T----------AIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA-GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPH  235 (398)
T ss_dssp             H----------HHHHHHHHHHHHHTTTCCTTSCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC-
T ss_pred             H----------HHHHHHHHHHHHHHhCCCCCccEEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCCcccCCccccchHH
Confidence            2          12334667778888889999999999999886 9999999999999 99999765              


Q ss_pred             -------------CCCHHhhccCCcEEEEccCCCCcccCCCc---CCCcEEEEeeecCC
Q 017184          276 -------------TKNPEEITRQADIIISAVGQPNMVRGSWI---KPGAVIIDVGINPV  318 (375)
Q Consensus       276 -------------t~~L~~~l~~ADIVIsAvG~p~~I~~~~v---k~gavVIDvgin~~  318 (375)
                                   ..+|.+.++.||++|-+.+ |+++++||+   +++.+|+|+. ||.
T Consensus       236 k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfals-NPt  292 (398)
T 2a9f_A          236 HLDIAKVTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMA-NPI  292 (398)
T ss_dssp             --CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             HHHHhhccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECC-CCC
Confidence                         1237788999999998877 999999998   5799999998 554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.30  E-value=5.3e-07  Score=90.14  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-----------------CCHHhhccCCc
Q 017184          226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-----------------KNPEEITRQAD  287 (375)
Q Consensus       226 ~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-----------------~~L~~~l~~AD  287 (375)
                      +...+++.+....++.|++|+|||.|++ |+.++..|...|+ +|++++++.                 .++.+.+..+|
T Consensus       151 a~~av~~a~~~~~~l~g~~VlIiGaG~i-G~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aD  229 (404)
T 1gpj_A          151 GSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSD  229 (404)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCS
T ss_pred             HHHHHHHHHHHhccccCCEEEEEChHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCC
Confidence            3344454442222679999999999886 9999999999998 899998762                 13455678899


Q ss_pred             EEEEccCCCCc-ccCCCc---------CCCcEEEEeeecCCCCCC--CCCCceeecccc-hhhhhhh---cceeccCCCC
Q 017184          288 IIISAVGQPNM-VRGSWI---------KPGAVIIDVGINPVEDAK--SPRGYRLVGDVC-YEEACEV---ASAITPVPGG  351 (375)
Q Consensus       288 IVIsAvG~p~~-I~~~~v---------k~gavVIDvgin~~~~~~--~~~g~kl~GDVd-~~~v~~~---a~~iTPVPGG  351 (375)
                      +||+++|.+.. ++.+++         .++.++||++.++..++.  ..++ -++=|+| +..+.+.   .+.  ..-.|
T Consensus       230 vVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i~~~l~~l~~-v~l~d~d~l~~~~~~~~~~r~--~~~~~  306 (404)
T 1gpj_A          230 VVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIED-VEVRTIDDLRVIARENLERRR--KEIPK  306 (404)
T ss_dssp             EEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTT-EEEEEHHHHHHHHHHHHHHHH--TTHHH
T ss_pred             EEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCCCccccccCC-eEEEeHhhHHHHHHHHHHHHH--HHHHH
Confidence            99999998765 443332         256899999985532321  0011 1111121 0111110   111  11111


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhc
Q 017184          352 VGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       352 VGp~T~amLl~N~v~a~~~~~~  373 (375)
                           ..|++.+.++.++.|++
T Consensus       307 -----~~~li~q~~~~f~~w~~  323 (404)
T 1gpj_A          307 -----VEKLIEEELSTVEEELE  323 (404)
T ss_dssp             -----HHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHH
Confidence                 44999999999999985

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.29  E-value=1.5e-06  Score=89.57  Aligned_cols=84  Identities=26%  Similarity=0.389  Sum_probs=71.7

Q ss_pred             HHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCCCc
Q 017184          232 LLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       232 lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      +.+..+..+.||+|+|+|.|+ +|+.+|..|...||+|+++.++.             .++.+..+.+|+|+.++|.++.
T Consensus       255 i~r~tg~~L~GKtVvVtGaGg-IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~v  333 (488)
T 3ond_A          255 LMRATDVMIAGKVAVVAGYGD-VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDI  333 (488)
T ss_dssp             HHHHHCCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCS
T ss_pred             HHHHcCCcccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhh
Confidence            345678899999999999996 59999999999999999998752             3567788899999999999988


Q ss_pred             ccC---CCcCCCcEEEEeeec
Q 017184          299 VRG---SWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 I~~---~~vk~gavVIDvgin  316 (375)
                      +..   +.++++++|+++|..
T Consensus       334 l~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          334 IMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             BCHHHHTTSCTTEEEEESSST
T ss_pred             hhHHHHHhcCCCeEEEEcCCC
Confidence            865   456899999999965

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.18  E-value=2e-06  Score=86.07  Aligned_cols=142  Identities=18%  Similarity=0.237  Sum_probs=97.0

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------CCCHHhhccCCcEEEEccCC-----
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITRQADIIISAVGQ-----  295 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------t~~L~~~l~~ADIVIsAvG~-----  295 (375)
                      +.+.++.+.++.||++.|||.|.+ |+.+|..|...|++|+.+++.         ..++++.+++||+|+.+++.     
T Consensus       107 L~l~r~~g~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~  185 (381)
T 3oet_A          107 LMLAERDGFSLRDRTIGIVGVGNV-GSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGP  185 (381)
T ss_dssp             HHHHHHTTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSST
T ss_pred             HHHHHhcCCccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCcccc
Confidence            345567789999999999999996 999999999999999998642         24688999999999999872     


Q ss_pred             ---CCcccCC---CcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchh------hhhhhcceeccCCCCccHH
Q 017184          296 ---PNMVRGS---WIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYE------EACEVASAITPVPGGVGPM  355 (375)
Q Consensus       296 ---p~~I~~~---~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~------~v~~~a~~iTPVPGGVGp~  355 (375)
                         .+++..+   .+|+|+++||++--...+..     -..| ++.|   ||-..      ...+..-.+||=-||.-.-
T Consensus       186 ~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g-~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e  264 (381)
T 3oet_A          186 YKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAG-QPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLE  264 (381)
T ss_dssp             TCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT-CCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHH
T ss_pred             ccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC-CCeEEEeeccccCCCCcchhhhCCEEECCccCcCcHH
Confidence               2356554   46899999999965432100     0011 2322   55211      1222223689988887766


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 017184          356 TIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       356 T~amLl~N~v~a~~~~~~  373 (375)
                      +..-....+++...++++
T Consensus       265 ~~~~~~~~~~~~l~~~l~  282 (381)
T 3oet_A          265 GKARGTTQVFEAYSAFIG  282 (381)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            655555555555555554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.17  E-value=4.2e-06  Score=81.96  Aligned_cols=80  Identities=25%  Similarity=0.348  Sum_probs=66.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       135 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSI-GQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred             CcccccceEEEEEECHH-HHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence            46899999999999996 9999999999999999998652            25778899999999998842    3565


Q ss_pred             CCC---cCCCcEEEEeeecC
Q 017184          301 GSW---IKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~~~---vk~gavVIDvgin~  317 (375)
                      .+.   +|+|+++||+|--.
T Consensus       214 ~~~l~~mk~gailIN~aRG~  233 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGN  233 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCch
Confidence            544   58999999999544

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.15  E-value=2.9e-06  Score=83.74  Aligned_cols=134  Identities=17%  Similarity=0.199  Sum_probs=90.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       168 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRI-GRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             BCCCTTCEEEEESCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccCCCEEEEEEeChh-HHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC
Confidence            46799999999999996 9999999999999999998752            37888999999999999843    4665


Q ss_pred             CC---CcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchhh-------hhhhcceeccCCCCccHHHHHHHHH
Q 017184          301 GS---WIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYEE-------ACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~~-------v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      .+   .+|+|+++||++--...+..     -..| ++.|   ||-..+       ..-..-.+||=-||.-.-+..-+..
T Consensus       247 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  325 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLINDDALIEALRSK-HLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGW  325 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC-CceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHH
Confidence            54   46999999999854322100     0001 3333   431111       1111235788778877666555555


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      .+++..++++
T Consensus       326 ~~~~ni~~~l  335 (345)
T 4g2n_A          326 LLIQGIEALN  335 (345)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.15  E-value=1.1e-06  Score=88.08  Aligned_cols=78  Identities=22%  Similarity=0.349  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------------------------
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------------------------  277 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------------------------  277 (375)
                      ++.|++|+|+|.|.+ |+.++.++...|++|++++++..                                         
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  247 (401)
T 1x13_A          169 KVPPAKVMVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME  247 (401)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHH
Confidence            578999999999875 99999999999999999987521                                         


Q ss_pred             CHHhhccCCcEEEEccCC-----CCcccCCC---cCCCcEEEEeeecC
Q 017184          278 NPEEITRQADIIISAVGQ-----PNMVRGSW---IKPGAVIIDVGINP  317 (375)
Q Consensus       278 ~L~~~l~~ADIVIsAvG~-----p~~I~~~~---vk~gavVIDvgin~  317 (375)
                      ++.+.++.+|+||.+++.     |.+++.++   +++|.+|||+++.+
T Consensus       248 ~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~  295 (401)
T 1x13_A          248 LFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCC
Confidence            255667789999999644     35676544   58999999999764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.11  E-value=3.4e-05  Score=75.67  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=91.2

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++++.+++||+|+.+++..    +++.
T Consensus       160 ~~~l~g~tvgIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          160 GTELNGKTLGILGLGRI-GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBC
T ss_pred             CcCCCcCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhC
Confidence            35799999999999996 9999999999999999998753            25778899999999999853    3564


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccc-------hhhhhhhcceeccCCCCccHHHHHHHHH
Q 017184          301 G---SWIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVC-------YEEACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd-------~~~v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      .   +.+|+|+++||+|.....+..     -..| ++-|   ||=       .+-.....-.+||-.+|.-.-+..-+..
T Consensus       239 ~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~  317 (335)
T 2g76_A          239 DNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG-QCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE  317 (335)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT-SEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC-CccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHH
Confidence            3   467999999999975432200     0001 2322   331       1111112345899989887776655555


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      .+++..++++
T Consensus       318 ~~~~nl~~~~  327 (335)
T 2g76_A          318 EIAVQFVDMV  327 (335)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.10  E-value=2.9e-06  Score=82.66  Aligned_cols=80  Identities=13%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.+            ++++.+++||+|+.+++..    +++.
T Consensus       134 ~~~l~g~tvGIiG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  212 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVL-GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIIN  212 (315)
T ss_dssp             CCCSTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred             CCCcCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence            45789999999999996 99999999999999999976532            5778899999999998842    4565


Q ss_pred             C---CCcCCCcEEEEeeecC
Q 017184          301 G---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~  317 (375)
                      .   ..+|+|+++||+|--.
T Consensus       213 ~~~l~~mk~gailIN~aRG~  232 (315)
T 3pp8_A          213 SELLDQLPDGAYVLNLARGV  232 (315)
T ss_dssp             HHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHhhCCCCCEEEECCCCh
Confidence            4   4579999999999543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.10  E-value=5e-06  Score=80.20  Aligned_cols=78  Identities=22%  Similarity=0.296  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCC-C---CcccC---
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQ-P---NMVRG---  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~-p---~~I~~---  301 (375)
                      .++.||++.|||.|.+ |+++|..|...|++|+.++++.         .++++.+++||+|+.+++. +   +++..   
T Consensus       118 ~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  196 (290)
T 3gvx_A          118 TLLYGKALGILGYGGI-GRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL  196 (290)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             eeeecchheeeccCch-hHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHH
Confidence            3689999999999996 9999999999999999998753         3788999999999999984 2   34544   


Q ss_pred             CCcCCCcEEEEeeec
Q 017184          302 SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ~~vk~gavVIDvgin  316 (375)
                      +.+|+|+++||++--
T Consensus       197 ~~mk~gailIN~aRG  211 (290)
T 3gvx_A          197 ANARKNLTIVNVARA  211 (290)
T ss_dssp             TTCCTTCEEEECSCG
T ss_pred             hhhhcCceEEEeehh
Confidence            467999999999944

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.09  E-value=3.3e-06  Score=82.58  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCC----CCccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQ----PNMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~----p~~I~  300 (375)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       132 ~~~l~gktvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQI-GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CccccCCeEEEECcCHH-HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            56899999999999996 9999999999999999998652            2567889999999999884    24565


Q ss_pred             CC---CcCCCcEEEEeeecC
Q 017184          301 GS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~  317 (375)
                      .+   .+|+|+++||+|--.
T Consensus       211 ~~~l~~mk~gailIN~aRG~  230 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGP  230 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGG
T ss_pred             HHHHhcCCCCCEEEEcCCCh
Confidence            44   469999999999543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.08  E-value=5.9e-06  Score=81.69  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=67.1

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCC----Cc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQP----NM  298 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p----~~  298 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.              .++++.+++||+|+.+++..    ++
T Consensus       159 ~~~l~gktvGIIG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          159 AYDLEGKTIGTVGAGRI-GKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             cccccCCEEeEEEeCHH-HHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            56899999999999996 9999999999999999998652              36889999999999999842    35


Q ss_pred             ccCC---CcCCCcEEEEeeecC
Q 017184          299 VRGS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       299 I~~~---~vk~gavVIDvgin~  317 (375)
                      +..+   .+|+|+++||++--.
T Consensus       238 i~~~~l~~mk~gailIN~aRG~  259 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGA  259 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGG
T ss_pred             hcHHHHhcCCCCCEEEECcCch
Confidence            6554   469999999998544

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.07  E-value=4e-06  Score=82.05  Aligned_cols=134  Identities=21%  Similarity=0.249  Sum_probs=89.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCC----CCcc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQ----PNMV  299 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~----p~~I  299 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.             .++.+.+++||+|+.+++.    .+++
T Consensus       140 ~~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAI-GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CCccCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            45789999999999996 9999999999999999998763             2567889999999999984    2356


Q ss_pred             cC---CCcCCCcEEEEeeecCCCCCCC-----CCCceee---cccchhh---------------hhhhcceeccCCCCcc
Q 017184          300 RG---SWIKPGAVIIDVGINPVEDAKS-----PRGYRLV---GDVCYEE---------------ACEVASAITPVPGGVG  353 (375)
Q Consensus       300 ~~---~~vk~gavVIDvgin~~~~~~~-----~~g~kl~---GDVd~~~---------------v~~~a~~iTPVPGGVG  353 (375)
                      ..   ..+|+|+++||++--...+...     ..| ++-   =||-..+               ..-..-.+||=-||.-
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g-~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t  297 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERG-QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV  297 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCC
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC-CccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCCh
Confidence            54   4579999999999543211000     001 221   2442111               0111335888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 017184          354 PMTIAMLLSNTLTSAKRVH  372 (375)
Q Consensus       354 p~T~amLl~N~v~a~~~~~  372 (375)
                      .-+..-+...+++..++++
T Consensus       298 ~e~~~~~~~~~~~ni~~~~  316 (330)
T 4e5n_A          298 RAVRLEIERCAAQNILQAL  316 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666555555555555443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.07  E-value=1e-05  Score=78.21  Aligned_cols=78  Identities=24%  Similarity=0.329  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------CCHHhhccCCcEEEEccCCC----CcccC---CC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------KNPEEITRQADIIISAVGQP----NMVRG---SW  303 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------~~L~~~l~~ADIVIsAvG~p----~~I~~---~~  303 (375)
                      ++.||++.|||.|.+ |+.+|..|...|++|+.++++.        .++.+.+++||+|+.+++..    +++..   ..
T Consensus       121 ~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~  199 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  199 (303)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             CCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhh
Confidence            689999999999996 9999999999999999988653        36788999999999999743    35653   46


Q ss_pred             cCCCcEEEEeeecC
Q 017184          304 IKPGAVIIDVGINP  317 (375)
Q Consensus       304 vk~gavVIDvgin~  317 (375)
                      +|+|+++||++...
T Consensus       200 mk~gailin~srg~  213 (303)
T 1qp8_A          200 MAEDAVFVNVGRAE  213 (303)
T ss_dssp             SCTTCEEEECSCGG
T ss_pred             CCCCCEEEECCCCc
Confidence            79999999999654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.07  E-value=7.3e-06  Score=79.70  Aligned_cols=79  Identities=13%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC-CC-------------CCHHhhccCCcEEEEccCCC----Ccc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-RT-------------KNPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs-~t-------------~~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      .++.||++.|||.|.+ |+.++..|...|++|+++++ +.             .++.+.+++||+|+.+++..    +++
T Consensus       142 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc
Confidence            4789999999999996 99999999999999999987 43             26778889999999999842    356


Q ss_pred             cC---CCcCCCcEEEEeeecC
Q 017184          300 RG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~~---~~vk~gavVIDvgin~  317 (375)
                      ..   +.+|+|+++||++...
T Consensus       221 ~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          221 NKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             SHHHHTTSCTTEEEEECSCGG
T ss_pred             CHHHHhhCCCCcEEEECCCCc
Confidence            44   5689999999999653

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.06  E-value=5.2e-06  Score=83.03  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=95.0

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------CCCHHhhccCCcEEEEccCC-----
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITRQADIIISAVGQ-----  295 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------t~~L~~~l~~ADIVIsAvG~-----  295 (375)
                      +.+.++.+.++.||++.|||.|.+ |+.+|..|...|++|+++++.         ..++.+.+++||+|+.+++.     
T Consensus       104 L~l~r~~~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~  182 (380)
T 2o4c_A          104 LAMAEVRGADLAERTYGVVGAGQV-GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGE  182 (380)
T ss_dssp             HHHHHHHTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSS
T ss_pred             HHHHhhhhcccCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccc
Confidence            445556788999999999999996 999999999999999998642         24688899999999998873     


Q ss_pred             ---CCcccC---CCcCCCcEEEEeeecCCCCCC-----CCCCc--eeecccch------hhhhhhcceeccCCCCccHHH
Q 017184          296 ---PNMVRG---SWIKPGAVIIDVGINPVEDAK-----SPRGY--RLVGDVCY------EEACEVASAITPVPGGVGPMT  356 (375)
Q Consensus       296 ---p~~I~~---~~vk~gavVIDvgin~~~~~~-----~~~g~--kl~GDVd~------~~v~~~a~~iTPVPGGVGp~T  356 (375)
                         .++++.   +.+|+|+++||++.....+..     -..|.  ...=||-.      +...+..-.+||=-+|.-.-+
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~e~  262 (380)
T 2o4c_A          183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEG  262 (380)
T ss_dssp             SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCHHH
T ss_pred             cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCHHH
Confidence               234554   356999999999965432210     00110  12224421      111222336899888887766


Q ss_pred             HHHHHHHHHHHHHHHh
Q 017184          357 IAMLLSNTLTSAKRVH  372 (375)
Q Consensus       357 ~amLl~N~v~a~~~~~  372 (375)
                      ..-....+++...+++
T Consensus       263 ~~~~~~~~~~nl~~~l  278 (380)
T 2o4c_A          263 KLRGTAQIYQAYCAWR  278 (380)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555555544

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.06  E-value=3.8e-06  Score=82.91  Aligned_cols=79  Identities=20%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------CHHhhccCCcEEEEccCC----CCcccCC-
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------NPEEITRQADIIISAVGQ----PNMVRGS-  302 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~L~~~l~~ADIVIsAvG~----p~~I~~~-  302 (375)
                      .++.||++.|||.|.+ |+.+|..|...|++|+.++++..          ++++.+++||+|+.+++.    .+++..+ 
T Consensus       144 ~~l~gktvgIiGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~  222 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHI-GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQ  222 (343)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             cccCCCeEEEEecCHH-HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHH
Confidence            4688999999999996 99999999999999999987632          578889999999999984    2456554 


Q ss_pred             --CcCCCcEEEEeeecC
Q 017184          303 --WIKPGAVIIDVGINP  317 (375)
Q Consensus       303 --~vk~gavVIDvgin~  317 (375)
                        .+|+|+++||+|--.
T Consensus       223 l~~mk~gailIN~aRg~  239 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGE  239 (343)
T ss_dssp             HHHSCTTCEEEECSCGG
T ss_pred             HhhCCCCcEEEECCCCh
Confidence              369999999999543

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.05  E-value=5.4e-06  Score=81.71  Aligned_cols=133  Identities=24%  Similarity=0.332  Sum_probs=84.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCCC----CcccCC-
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQP----NMVRGS-  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~p----~~I~~~-  302 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.         .++.+.+++||+|+.+++..    +++..+ 
T Consensus       166 ~~~l~gktiGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~  244 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQI-GRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASL  244 (340)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHH
T ss_pred             cccccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHH
Confidence            35899999999999996 9999999999999999998753         36889999999999999832    345443 


Q ss_pred             --CcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchhh------hhh-hcceeccCCCCccHHHHHHHHHHHH
Q 017184          303 --WIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYEE------ACE-VASAITPVPGGVGPMTIAMLLSNTL  365 (375)
Q Consensus       303 --~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~~------v~~-~a~~iTPVPGGVGp~T~amLl~N~v  365 (375)
                        .+|+|+++||++--...+..     -..| ++-|   ||-..+      ..+ ..-.+||=-||.-.-+..-+...++
T Consensus       245 l~~mk~gailIN~aRG~vvde~aL~~aL~~g-~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~  323 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGNVVDEDALIEALKSG-TIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVL  323 (340)
T ss_dssp             HHHTTTTCEEEECSCC--------------C-CSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcC-CceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHH
Confidence              46999999999855432210     0011 3322   442111      111 1236888888877655554444444


Q ss_pred             HHHHHH
Q 017184          366 TSAKRV  371 (375)
Q Consensus       366 ~a~~~~  371 (375)
                      +..+++
T Consensus       324 ~nl~~~  329 (340)
T 4dgs_A          324 ANLAAH  329 (340)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.05  E-value=4.6e-06  Score=81.50  Aligned_cols=79  Identities=22%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------CHHhhccCCcEEEEccCCC----CcccC--
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------NPEEITRQADIIISAVGQP----NMVRG--  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~L~~~l~~ADIVIsAvG~p----~~I~~--  301 (375)
                      .++.||++.|||.|.+ |+.+|..|...|++|++++++..          ++.+.+++||+|+.+++..    +++..  
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~  220 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRI-GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF  220 (331)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHH
Confidence            4689999999999996 99999999999999999876532          5778899999999998842    45643  


Q ss_pred             -CCcCCCcEEEEeeecC
Q 017184          302 -SWIKPGAVIIDVGINP  317 (375)
Q Consensus       302 -~~vk~gavVIDvgin~  317 (375)
                       +.+|+|+++||++...
T Consensus       221 l~~mk~ga~lin~srg~  237 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQ  237 (331)
T ss_dssp             HHTSCTTEEEEECSCGG
T ss_pred             HhhCCCCcEEEECCCcc
Confidence             3569999999999543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.05  E-value=9.6e-06  Score=80.38  Aligned_cols=81  Identities=25%  Similarity=0.348  Sum_probs=67.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC--------------CCHHhhccCCcEEEEccCCC----C
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT--------------KNPEEITRQADIIISAVGQP----N  297 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p----~  297 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++ |++++++.              .++.+.+++||+|+.+++..    +
T Consensus       159 ~~~l~g~tvgIIG~G~I-G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~  237 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRI-GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG  237 (364)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTT
T ss_pred             cccCCCCEEEEECcCHH-HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHH
Confidence            56899999999999996 99999999999997 99987642              36788899999999999853    4


Q ss_pred             cccC---CCcCCCcEEEEeeecCC
Q 017184          298 MVRG---SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       298 ~I~~---~~vk~gavVIDvgin~~  318 (375)
                      ++..   ..+|+|+++||++-...
T Consensus       238 li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          238 LINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HhCHHHHhhCCCCCEEEECCCCch
Confidence            5654   46799999999996543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.04  E-value=3.6e-05  Score=76.52  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       171 ~~~l~gktvGIIGlG~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~  249 (365)
T 4hy3_A          171 ARLIAGSEIGIVGFGDL-GKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLG  249 (365)
T ss_dssp             CCCSSSSEEEEECCSHH-HHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCC
T ss_pred             ccccCCCEEEEecCCcc-cHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcC
Confidence            35789999999999996 9999999999999999988652            25788999999999998842    3565


Q ss_pred             CC---CcCCCcEEEEeeecCCCCCC-----CCCCcee--ecccchh--------hhhhhcceeccCCCCccHHHHHHHHH
Q 017184          301 GS---WIKPGAVIIDVGINPVEDAK-----SPRGYRL--VGDVCYE--------EACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~~~~~~-----~~~g~kl--~GDVd~~--------~v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      .+   .+|+|+++||++--...+..     -..| ++  .=||-..        -..-..-.+||=-||.-.-+...+..
T Consensus       250 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  328 (365)
T 4hy3_A          250 AEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG-HIVAASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGD  328 (365)
T ss_dssp             HHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT-SSEEEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC-CceEEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHH
Confidence            54   46999999999933221100     0000 00  0021100        00111235899888887777766666


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      .+++..++|+
T Consensus       329 ~~~~ni~~~~  338 (365)
T 4hy3_A          329 MVLEDMDLMD  338 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.03  E-value=6.1e-06  Score=80.00  Aligned_cols=133  Identities=21%  Similarity=0.254  Sum_probs=89.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------CCHHhhccCCcEEEEccCCC----CcccC---CC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------KNPEEITRQADIIISAVGQP----NMVRG---SW  303 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------~~L~~~l~~ADIVIsAvG~p----~~I~~---~~  303 (375)
                      .++.||++.|||.|.+ |+.++..|...|++|++++++.       .++.+.+++||+|+.+++..    +++..   ..
T Consensus       140 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~  218 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRI-GQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA  218 (311)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTT
T ss_pred             cCCCCCEEEEEEECHH-HHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhh
Confidence            5789999999999996 9999999999999999998754       25888999999999998743    34543   46


Q ss_pred             cCCCcEEEEeeecCCCCCC----CCCCceeec---ccch--------hhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          304 IKPGAVIIDVGINPVEDAK----SPRGYRLVG---DVCY--------EEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       304 vk~gavVIDvgin~~~~~~----~~~g~kl~G---DVd~--------~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      +|+|+++||++.....+..    .-+| ++-|   ||-.        +-.....-.+||-.+|.-.-+..-+....++..
T Consensus       219 mk~ga~lin~srg~~vd~~aL~~aL~g-~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl  297 (311)
T 2cuk_A          219 MKRGAILLNTARGALVDTEALVEALRG-HLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENL  297 (311)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHTT-TSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCccCHHHHHHHHhC-cCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHH
Confidence            7999999999965432200    0011 2212   3311        111112346899888877666555555555555


Q ss_pred             HHHh
Q 017184          369 KRVH  372 (375)
Q Consensus       369 ~~~~  372 (375)
                      ++++
T Consensus       298 ~~~~  301 (311)
T 2cuk_A          298 LAVL  301 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.02  E-value=7.7e-06  Score=84.42  Aligned_cols=90  Identities=23%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             HHHHHHHHH-hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEc
Q 017184          227 KGCIELLHR-YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISA  292 (375)
Q Consensus       227 ~gvi~lL~~-~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsA  292 (375)
                      ..++.-+++ .+..+.||+|+|+|.|.+ |+.++..|...|++|+++++..             .++.+.++++|+||.+
T Consensus       258 ~s~~~g~~r~~~~~l~GktV~IiG~G~I-G~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~a  336 (494)
T 3ce6_A          258 HSLIDGINRGTDALIGGKKVLICGYGDV-GKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTA  336 (494)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEEC
T ss_pred             hhhhHHHHhccCCCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEEC
Confidence            334443433 456789999999999885 9999999999999999998652             2466778899999999


Q ss_pred             cCCCCcccC---CCcCCCcEEEEeeecC
Q 017184          293 VGQPNMVRG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       293 vG~p~~I~~---~~vk~gavVIDvgin~  317 (375)
                      +|.++++..   +.+|+|++++|+|...
T Consensus       337 tgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          337 TGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             SSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            999888864   4579999999999643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.02  E-value=6.8e-06  Score=79.67  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=89.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CHHhhccCCcEEEEccCC----CCccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITRQADIIISAVGQ----PNMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L~~~l~~ADIVIsAvG~----p~~I~  300 (375)
                      +.++.||++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++.    .+++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRI-GTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCCTTCEEEEESCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhC
Confidence            46899999999999996 99999999999999999987532            567888999999999984    23554


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCC-----CCCCceeec---cc-------ch---hhhhhhcceeccCCCCccHHHHHH
Q 017184          301 G---SWIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DV-------CY---EEACEVASAITPVPGGVGPMTIAM  359 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DV-------d~---~~v~~~a~~iTPVPGGVGp~T~am  359 (375)
                      .   +.+|+|+++||++.....+..     -..| ++-|   ||       +.   +-.....-.+||-.+|.-.-+..-
T Consensus       216 ~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG-KVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT-CEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC-CCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            4   346999999999975432200     0011 2321   33       11   111112346899888877666555


Q ss_pred             HHHHHHHHHHHH
Q 017184          360 LLSNTLTSAKRV  371 (375)
Q Consensus       360 Ll~N~v~a~~~~  371 (375)
                      +....++..+++
T Consensus       295 ~~~~~~~n~~~~  306 (313)
T 2ekl_A          295 VAEMTTQNLLNA  306 (313)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555444444

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.00  E-value=3.6e-05  Score=76.07  Aligned_cols=134  Identities=17%  Similarity=0.182  Sum_probs=91.1

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEccCCC----Ccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISAVGQP----NMV  299 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsAvG~p----~~I  299 (375)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++             ..++++.+++||+|+.+++..    +++
T Consensus       155 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKI-GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            45789999999999996 999999999999999998764             137889999999999998742    356


Q ss_pred             cC---CCcCCCcEEEEeeecCCCCCCC-----CCCceeec---ccch--------hhhhhhcceeccCCCCccHHHHHHH
Q 017184          300 RG---SWIKPGAVIIDVGINPVEDAKS-----PRGYRLVG---DVCY--------EEACEVASAITPVPGGVGPMTIAML  360 (375)
Q Consensus       300 ~~---~~vk~gavVIDvgin~~~~~~~-----~~g~kl~G---DVd~--------~~v~~~a~~iTPVPGGVGp~T~amL  360 (375)
                      ..   ..+|+|+++||+|-....+...     ..| ++-|   ||-.        .-..-..-.+||=-||.-.-+...+
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g-~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~  312 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELVEENGMVTALNRG-RPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMY  312 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHT-SSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhC-CccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHH
Confidence            54   4579999999999443221000     000 1211   2211        0111113368888888887777666


Q ss_pred             HHHHHHHHHHHh
Q 017184          361 LSNTLTSAKRVH  372 (375)
Q Consensus       361 l~N~v~a~~~~~  372 (375)
                      ...+++..++|+
T Consensus       313 ~~~~~~ni~~~~  324 (352)
T 3gg9_A          313 FGIAFQNILDIL  324 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.00  E-value=7.5e-06  Score=81.12  Aligned_cols=78  Identities=32%  Similarity=0.526  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .+.|++|+|+|.|.+ |+.++..+...|++|++++++..                     ++.+.++++|+||.+++.|.
T Consensus       165 ~l~g~~V~ViG~G~i-G~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTA-GYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            578999999999775 99999999999999999876521                     24456678999999998664


Q ss_pred             -----cccC---CCcCCCcEEEEeeecC
Q 017184          298 -----MVRG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       298 -----~I~~---~~vk~gavVIDvgin~  317 (375)
                           ++..   +.+++|.++||+|+.+
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                 3443   4568999999999764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.00  E-value=7.4e-06  Score=79.19  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=90.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CHHhhccCCcEEEEccCCC----CcccC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITRQADIIISAVGQP----NMVRG  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L~~~l~~ADIVIsAvG~p----~~I~~  301 (375)
                      .++.||++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++..    +++..
T Consensus       138 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRI-GYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccCCceEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCH
Confidence            5789999999999996 99999999999999999987542            5678889999999999842    35644


Q ss_pred             C---CcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccch--------hhhhhhcceeccCCCCccHHHHHHHHH
Q 017184          302 S---WIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCY--------EEACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       302 ~---~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~--------~~v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      +   .+|+|+++||++.....+..     -..| ++-|   ||-.        +-.....-.+||-.+|.-.-+..-+..
T Consensus       217 ~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  295 (307)
T 1wwk_A          217 ERLKLMKKTAILINTSRGPVVDTNALVKALKEG-WIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV  295 (307)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT-SSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC-CCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHH
Confidence            3   46999999999976432200     0001 1211   3311        111112346899999887766666666


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      ..++..++++
T Consensus       296 ~~~~nl~~~~  305 (307)
T 1wwk_A          296 EVAEKVVKIL  305 (307)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666555553

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.97  E-value=7e-06  Score=80.31  Aligned_cols=81  Identities=23%  Similarity=0.344  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------CHHhhccCCcEEEEccCCC----CcccC-
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------NPEEITRQADIIISAVGQP----NMVRG-  301 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~L~~~l~~ADIVIsAvG~p----~~I~~-  301 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++..          ++.+.+++||+|+.+++..    +++.. 
T Consensus       140 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~  218 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  218 (333)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHH
Confidence            35789999999999996 99999999999999999876532          5778899999999999843    35644 


Q ss_pred             --CCcCCCcEEEEeeecCC
Q 017184          302 --SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 --~~vk~gavVIDvgin~~  318 (375)
                        ..+|+|+++||++....
T Consensus       219 ~l~~mk~ga~lIn~srg~~  237 (333)
T 1dxy_A          219 AFNLMKPGAIVINTARPNL  237 (333)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HHhhCCCCcEEEECCCCcc
Confidence              34699999999997654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.94  E-value=1.2e-05  Score=78.84  Aligned_cols=80  Identities=24%  Similarity=0.398  Sum_probs=66.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCCC----CcccCC-
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQP----NMVRGS-  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~p----~~I~~~-  302 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|++++++.         .++.+.+++||+||.+++..    +++..+ 
T Consensus       159 ~~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~  237 (333)
T 3ba1_A          159 TTKFSGKRVGIIGLGRI-GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREV  237 (333)
T ss_dssp             CCCCTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHH
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHH
Confidence            35799999999999996 9999999999999999997653         36788899999999999853    345432 


Q ss_pred             --CcCCCcEEEEeeecC
Q 017184          303 --WIKPGAVIIDVGINP  317 (375)
Q Consensus       303 --~vk~gavVIDvgin~  317 (375)
                        .+|+|+++||++--.
T Consensus       238 l~~mk~gailIn~srG~  254 (333)
T 3ba1_A          238 IDALGPKGVLINIGRGP  254 (333)
T ss_dssp             HHHHCTTCEEEECSCGG
T ss_pred             HhcCCCCCEEEECCCCc
Confidence              458999999998554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.93  E-value=5.2e-05  Score=78.48  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccccCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            46799999999999996 9999999999999999997653            15667889999999999854    3454


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCCC-----CCCceeec---cc-------chhhhhhhcceeccCCCCccHHHHHHHHH
Q 017184          301 G---SWIKPGAVIIDVGINPVEDAKS-----PRGYRLVG---DV-------CYEEACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~~~~~~-----~~g~kl~G---DV-------d~~~v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      .   ..+|+|+++||++--...+...     .+| ++-|   ||       |.+-+....-.+||-.||.-+-+..-+..
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g-~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLVDEAALADAITGG-HVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS-SEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcC-CccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            4   4679999999999543221000     011 2211   22       10111112235899999988777666555


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      ..++...+++
T Consensus       295 ~~~~~l~~~l  304 (529)
T 1ygy_A          295 DVAESVRLAL  304 (529)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.93  E-value=2.3e-05  Score=77.27  Aligned_cols=133  Identities=17%  Similarity=0.234  Sum_probs=89.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      .++.||++.|||.|.+ |++++..|...|++|++++++.             .++.+.+++||+|+.+++..    +++.
T Consensus       164 ~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             cCCCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            5799999999999996 9999999999999999987642             25778899999999998842    3464


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCCC-----CCCceeec---ccchhh--------hhh-hcceeccCCCCccHHHHHHH
Q 017184          301 G---SWIKPGAVIIDVGINPVEDAKS-----PRGYRLVG---DVCYEE--------ACE-VASAITPVPGGVGPMTIAML  360 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~~~~~~-----~~g~kl~G---DVd~~~--------v~~-~a~~iTPVPGGVGp~T~amL  360 (375)
                      .   ..+|+|+++||++.....+...     ..| ++.|   ||-..+        +.. ..-.+||=-+|...-+..-+
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~  321 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG-RIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM  321 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT-SEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC-CCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHH
Confidence            3   4579999999999765422100     001 2221   222100        111 12357888888777776666


Q ss_pred             HHHHHHHHHHHh
Q 017184          361 LSNTLTSAKRVH  372 (375)
Q Consensus       361 l~N~v~a~~~~~  372 (375)
                      ...+++..++++
T Consensus       322 ~~~~~~ni~~~~  333 (347)
T 1mx3_A          322 REEAAREIRRAI  333 (347)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666665555543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.93  E-value=1.4e-05  Score=78.58  Aligned_cols=133  Identities=22%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHh-hCCCeEEEEcCCCC--------------CHHhhccCCcEEEEccCCC----C
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQ-REDATVSIVHSRTK--------------NPEEITRQADIIISAVGQP----N  297 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~-~~gAtVtv~hs~t~--------------~L~~~l~~ADIVIsAvG~p----~  297 (375)
                      +.++.||++.|||.|.+ |+.++..|. ..|++|++++++..              ++.+.+++||+|+.+++..    +
T Consensus       158 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAI-QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            56899999999999996 999999999 99999999986531              5677889999999999853    3


Q ss_pred             cccC---CCcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchhh------hhhh-cceeccCCCCccHHHHHH
Q 017184          298 MVRG---SWIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYEE------ACEV-ASAITPVPGGVGPMTIAM  359 (375)
Q Consensus       298 ~I~~---~~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~~------v~~~-a~~iTPVPGGVGp~T~am  359 (375)
                      ++..   ..+|+|+++||++.....+..     -..| ++.|   ||-..+      ..+. .-.+||-.||.-.-+..-
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~-~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~  315 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG-KLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE  315 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT-SEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC-CceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHH
Confidence            4543   356999999999865432100     0011 3322   442111      1111 235788888877666555


Q ss_pred             HHHHHHHHHHHH
Q 017184          360 LLSNTLTSAKRV  371 (375)
Q Consensus       360 Ll~N~v~a~~~~  371 (375)
                      +...+++..+++
T Consensus       316 ~~~~~~~ni~~~  327 (348)
T 2w2k_A          316 FERLTMTNIDRF  327 (348)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555544444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.93  E-value=1.2e-05  Score=81.40  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=67.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRGS  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~~  302 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.+++..          .++++.+++||+|+..++..    +++..+
T Consensus       151 ~~el~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~  229 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNI-GSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEA  229 (416)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHH
T ss_pred             CccCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHH
Confidence            46899999999999996 9999999999999999998642          36889999999999999842    467554


Q ss_pred             ---CcCCCcEEEEeeecCC
Q 017184          303 ---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       303 ---~vk~gavVIDvgin~~  318 (375)
                         .+|+|+++||++--..
T Consensus       230 ~l~~mk~gailIN~aRG~v  248 (416)
T 3k5p_A          230 KLRKMKKGAFLINNARGSD  248 (416)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HHhhCCCCcEEEECCCChh
Confidence               4699999999996543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.90  E-value=9.9e-06  Score=79.18  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------CHHhhccCCcEEEEccCCC----CcccC-
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------NPEEITRQADIIISAVGQP----NMVRG-  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~L~~~l~~ADIVIsAvG~p----~~I~~-  301 (375)
                      .++.||++.|||.|.+ |+.++..|...|++|++++++..           ++.+.+++||+|+.+++..    +++.. 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence            4789999999999996 99999999999999999876532           6778899999999999843    34544 


Q ss_pred             --CCcCCCcEEEEeeecC
Q 017184          302 --SWIKPGAVIIDVGINP  317 (375)
Q Consensus       302 --~~vk~gavVIDvgin~  317 (375)
                        +.+|+|+++||++...
T Consensus       221 ~l~~mk~ga~lIn~arg~  238 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGP  238 (333)
T ss_dssp             HHHHSCTTEEEEECSCGG
T ss_pred             HHhhCCCCcEEEECCCCc
Confidence              3469999999998654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.89  E-value=3.2e-05  Score=77.59  Aligned_cols=80  Identities=15%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCC----Cc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQP----NM  298 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p----~~  298 (375)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.              .++++.+++||+|+.+++..    ++
T Consensus       186 ~~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  264 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM  264 (393)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHH
Confidence            46799999999999996 9999999999999999987652              35788899999999999842    45


Q ss_pred             ccC---CCcCCCcEEEEeeecC
Q 017184          299 VRG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       299 I~~---~~vk~gavVIDvgin~  317 (375)
                      +..   ..+|+|+++||++--.
T Consensus       265 i~~~~l~~mk~gailIN~aRG~  286 (393)
T 2nac_A          265 INDETLKLFKRGAYIVNTARGK  286 (393)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGG
T ss_pred             hhHHHHhhCCCCCEEEECCCch
Confidence            643   4679999999999654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.87  E-value=2.1e-05  Score=76.80  Aligned_cols=134  Identities=22%  Similarity=0.290  Sum_probs=88.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCCC----Cccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      +.++.||++.|||.|.+ |+.++..|...|++|++++++.            .++.+.+++||+||.+++..    +++.
T Consensus       145 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~  223 (334)
T 2dbq_A          145 GYDVYGKTIGIIGLGRI-GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLIN  223 (334)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             ccCCCCCEEEEEccCHH-HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhC
Confidence            35789999999999986 9999999999999999988753            25667889999999999854    3454


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCC-----CCCCceeec---ccchh------hhhh-hcceeccCCCCccHHHHHHHHH
Q 017184          301 G---SWIKPGAVIIDVGINPVEDAK-----SPRGYRLVG---DVCYE------EACE-VASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~~~~~~-----~~~g~kl~G---DVd~~------~v~~-~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      .   ..+++|+++||++.-...+..     -..| ++-|   ||-..      ...+ ..-.+||-.||.-.-+..-+..
T Consensus       224 ~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~-~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~  302 (334)
T 2dbq_A          224 EERLKLMKKTAILINIARGKVVDTNALVKALKEG-WIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAE  302 (334)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT-SSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC-CeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHH
Confidence            2   357899999999854332200     0001 2222   33110      1111 1235788888877666555555


Q ss_pred             HHHHHHHHHh
Q 017184          363 NTLTSAKRVH  372 (375)
Q Consensus       363 N~v~a~~~~~  372 (375)
                      .+++..++++
T Consensus       303 ~~~~n~~~~~  312 (334)
T 2dbq_A          303 LVAKNLIAFK  312 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.86  E-value=2.8e-05  Score=75.62  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhccCCcEEEEccCCC----Cccc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITRQADIIISAVGQP----NMVR  300 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~~ADIVIsAvG~p----~~I~  300 (375)
                      .++.||++.|||.|.+ |++++..|...|++|++++++..             ++.+.++++|+||.+++..    +++.
T Consensus       151 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRI-GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence            5689999999999886 99999999999999999986532             5667889999999999853    3454


Q ss_pred             C---CCcCCCcEEEEeeecC
Q 017184          301 G---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin~  317 (375)
                      .   +.+++|+++||++...
T Consensus       230 ~~~~~~mk~gailIn~srg~  249 (330)
T 2gcg_A          230 KDFFQKMKETAVFINISRGD  249 (330)
T ss_dssp             HHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCCc
Confidence            2   3568999999998653

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.85  E-value=4.9e-06  Score=83.68  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC---CCHHhhccCCcEEEEccC----CCCcccCCCc----CC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT---KNPEEITRQADIIISAVG----QPNMVRGSWI----KP  306 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t---~~L~~~l~~ADIVIsAvG----~p~~I~~~~v----k~  306 (375)
                      ..-+|+|||+.|.||+.++.++...||   .|++.+.+.   ....+.++++||||+++-    .|.+|+.+|+    |+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~~~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~  292 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKLNNPNRR  292 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCCTHHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCchhhHhhCCEEEECcCcCCCCCcccCHHHHhcCcCC
Confidence            567899999956679999999999998   899997642   111256789999999986    4888998876    78


Q ss_pred             CcEEEEeeecCC---CC------CCCCCCceee--cccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          307 GAVIIDVGINPV---ED------AKSPRGYRLV--GDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       307 gavVIDvgin~~---~~------~~~~~g~kl~--GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      |++||||.+.+-   ++      +++.+. .++  .+.+-+.+  ..-+++-.||-+ |.|...++.|.+.-+
T Consensus       293 gsVIVDVA~D~GG~~et~~f~~~~Tt~~~-P~~~~~g~~~~~V--~~~~v~nlP~~l-PrtAS~~~sn~llp~  361 (394)
T 2qrj_A          293 LRTVVDVSADTTNPHNPIPIYTVATVFNK-PTVLVPTTAGPKL--SVISIDHLPSLL-PREASEFFSHDLLPS  361 (394)
T ss_dssp             CCEEEETTCCTTCTTCSSCSCCCCCBTTB-CCEEECCSSSSCE--EEECCTTGGGGS-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCCCcCcccccccCCccCC-CEEEECCCCCCCE--EEEEeCChhhhh-HHHHHHHHHHHHHHH
Confidence            999999987652   10      111110 011  00000000  112355678888 999999988877554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.85  E-value=5e-05  Score=73.76  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCCC-------------------CHHhhccCCcEEEEccCCCC-c
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRTK-------------------NPEEITRQADIIISAVGQPN-M  298 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t~-------------------~L~~~l~~ADIVIsAvG~p~-~  298 (375)
                      ..|++.|||.|.. |+..+..|.. .+ .+|++++++ +                   ++++.+++|||||++++... +
T Consensus       120 ~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pv  197 (313)
T 3hdj_A          120 RSSVLGLFGAGTQ-GAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPL  197 (313)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCS
T ss_pred             CCcEEEEECccHH-HHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCcc
Confidence            6799999999996 9999888876 34 589999886 2                   34556788999999999765 4


Q ss_pred             ccCCCcCCCcEEEEeeec
Q 017184          299 VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 I~~~~vk~gavVIDvgin  316 (375)
                      ++.+|+++|+.|+|+|..
T Consensus       198 l~~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          198 FAGQALRAGAFVGAIGSS  215 (313)
T ss_dssp             SCGGGCCTTCEEEECCCS
T ss_pred             cCHHHcCCCcEEEECCCC
Confidence            788999999999999975

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.84  E-value=2.1e-05  Score=79.07  Aligned_cols=81  Identities=22%  Similarity=0.420  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRGS  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~~  302 (375)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.          .++++.+++||+|+..++..    +++..+
T Consensus       140 ~~el~gktlGiIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence            46899999999999996 9999999999999999997642          36888999999999999853    356543


Q ss_pred             ---CcCCCcEEEEeeecCC
Q 017184          303 ---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       303 ---~vk~gavVIDvgin~~  318 (375)
                         .+|+|+++||++--..
T Consensus       219 ~l~~mk~ga~lIN~aRg~~  237 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTV  237 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhcCCCeEEEECCCChH
Confidence               4699999999996543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.83  E-value=2.7e-05  Score=76.05  Aligned_cols=131  Identities=19%  Similarity=0.273  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CHHhhccCCcEEEEccCCC----CcccC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITRQADIIISAVGQP----NMVRG  301 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L~~~l~~ADIVIsAvG~p----~~I~~  301 (375)
                      .++.||++.|||.|.+ |+.+|..|...|++|++++++..            ++.+.+++||+||.+++..    +++..
T Consensus       142 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAI-GKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             CCSTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred             CCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence            6899999999999996 99999999999999999887532            5667789999999999864    34553


Q ss_pred             ---CCcCCCcEEEEeeecCCCCCCC-----CCCcee---ecccchh------hhhhhc--ceeccCCCCccHHHHHHHHH
Q 017184          302 ---SWIKPGAVIIDVGINPVEDAKS-----PRGYRL---VGDVCYE------EACEVA--SAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       302 ---~~vk~gavVIDvgin~~~~~~~-----~~g~kl---~GDVd~~------~v~~~a--~~iTPVPGGVGp~T~amLl~  362 (375)
                         ..+++| ++||++-....+...     ..| ++   --||--.      ...+..  -.+||-.+|.-.-+..-+..
T Consensus       221 ~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~-~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~  298 (333)
T 2d0i_A          221 ERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQG-KLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGF  298 (333)
T ss_dssp             HHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTT-CBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCC-EEEECCCCcccCHHHHHHHHHcC-CceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHH
Confidence               356899 999998544322000     001 11   1133110      111222  35788888877666555555


Q ss_pred             HHHHHHHHH
Q 017184          363 NTLTSAKRV  371 (375)
Q Consensus       363 N~v~a~~~~  371 (375)
                      .+++..+++
T Consensus       299 ~~~~n~~~~  307 (333)
T 2d0i_A          299 RAVENLLKV  307 (333)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.80  E-value=8.2e-05  Score=71.66  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhC-CC-eEEEEcCCC-----------------CCHHhhccCCcEEEEccCCCC-c
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQRE-DA-TVSIVHSRT-----------------KNPEEITRQADIIISAVGQPN-M  298 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~-gA-tVtv~hs~t-----------------~~L~~~l~~ADIVIsAvG~p~-~  298 (375)
                      ...++++.|||.|.+ |++++..|.+. |. +|++++++.                 .++++.++++|+||++++... +
T Consensus       132 ~~~~~~igiIG~G~~-g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v  210 (312)
T 2i99_A          132 PPSSEVLCILGAGVQ-AYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPI  210 (312)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCC
T ss_pred             CCCCcEEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcc
Confidence            567899999999986 99999988775 76 899998651                 356778899999999998544 4


Q ss_pred             ccCCCcCCCcEEEEeeec
Q 017184          299 VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 I~~~~vk~gavVIDvgin  316 (375)
                      +..+|+++|.+|+|+|..
T Consensus       211 ~~~~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          211 LFGEWVKPGAHINAVGAS  228 (312)
T ss_dssp             BCGGGSCTTCEEEECCCC
T ss_pred             cCHHHcCCCcEEEeCCCC
Confidence            666899999999999744

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.78  E-value=1.4e-05  Score=78.74  Aligned_cols=78  Identities=33%  Similarity=0.492  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .++|++|+|+|.|+ +|+.++..|...|++|++++++..                     ++.+.++.+|+||.++|.+.
T Consensus       163 ~l~~~~V~ViGaG~-iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGT-VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            47899999999976 599999999999999999876521                     23456678999999998653


Q ss_pred             -----cccC---CCcCCCcEEEEeeecC
Q 017184          298 -----MVRG---SWIKPGAVIIDVGINP  317 (375)
Q Consensus       298 -----~I~~---~~vk~gavVIDvgin~  317 (375)
                           ++..   +.+++|.++||+++..
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCC
Confidence                 3443   3568899999999753

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.70  E-value=3.8e-05  Score=75.29  Aligned_cols=81  Identities=20%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------CCHHhhccCCcEEEEccCC----CCcccC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------KNPEEITRQADIIISAVGQ----PNMVRG  301 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------~~L~~~l~~ADIVIsAvG~----p~~I~~  301 (375)
                      +.++.||++.|||.|.+ |+.++..+..-|++|..+++..           .++++.+++||||+..++.    -++|+.
T Consensus       136 ~~~l~g~tvGIiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~  214 (334)
T 3kb6_A          136 ARELNRLTLGVIGTGRI-GSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINE  214 (334)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cceecCcEEEEECcchH-HHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCH
Confidence            35789999999999997 9999999999999999887653           3678899999999998873    246776


Q ss_pred             C---CcCCCcEEEEeeecCC
Q 017184          302 S---WIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 ~---~vk~gavVIDvgin~~  318 (375)
                      +   .+|+|+++|++|--.+
T Consensus       215 ~~l~~mk~~a~lIN~aRG~i  234 (334)
T 3kb6_A          215 ERISLMKDGVYLINTARGKV  234 (334)
T ss_dssp             HHHHHSCTTEEEEECSCGGG
T ss_pred             HHHhhcCCCeEEEecCcccc
Confidence            5   4599999999985543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.68  E-value=0.00014  Score=71.71  Aligned_cols=77  Identities=16%  Similarity=0.274  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC---------------------CCHHhhccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT---------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ...++++.|||.|.. |+..+..|.. .+ .+|++++++.                     .++++.+++|||||++++.
T Consensus       126 ~~~~~~v~iIGaG~~-a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          126 RPNARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             CTTCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred             cccCCeEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccC
Confidence            357899999999996 9998876643 44 5899998751                     3466788999999999997


Q ss_pred             CC---cccCCCcCCCcEEEEeeec
Q 017184          296 PN---MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       296 p~---~I~~~~vk~gavVIDvgin  316 (375)
                      +.   ++..+|+++|..|+|+|..
T Consensus       205 ~~~~pvl~~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          205 KAYATIITPDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             SSEEEEECGGGCCTTCEEEECSCC
T ss_pred             CCCCceecHHHcCCCCEEEECCCC
Confidence            62   4788999999999999954

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.67  E-value=0.00011  Score=71.29  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC-------------------CCHHhhccCCcEEEEccCCCCc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT-------------------KNPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t-------------------~~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      ...+++.|||.|.. |+..+..|.. .+ .+|++++|+.                   .++++.+ ++|+||++++....
T Consensus       123 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p  200 (322)
T 1omo_A          123 KNSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP  200 (322)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence            46899999999986 9999888876 34 5799998762                   2456677 89999999986553


Q ss_pred             -ccCCCcCCCcEEEEeee
Q 017184          299 -VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       299 -I~~~~vk~gavVIDvgi  315 (375)
                       ++.+|+++|..|+|+|.
T Consensus       201 v~~~~~l~~G~~V~~ig~  218 (322)
T 1omo_A          201 VVKAEWVEEGTHINAIGA  218 (322)
T ss_dssp             CBCGGGCCTTCEEEECSC
T ss_pred             eecHHHcCCCeEEEECCC
Confidence             67889999999999973

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.63  E-value=1.7e-05  Score=73.37  Aligned_cols=80  Identities=18%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             HHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC-----------------------------HHhhc
Q 017184          233 LHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN-----------------------------PEEIT  283 (375)
Q Consensus       233 L~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~-----------------------------L~~~l  283 (375)
                      .++...++.++++.|||.|.+ |.+++..|.+.|.+|++++++...                             +.+.+
T Consensus        10 ~~~~~~~~~~~kIgiIG~G~m-G~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   88 (245)
T 3dtt_A           10 HHHENLYFQGMKIAVLGTGTV-GRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVA   88 (245)
T ss_dssp             ---------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHH
T ss_pred             ccccccccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHH
Confidence            345667889999999999986 999999999999999999875321                             23556


Q ss_pred             cCCcEEEEccCCCCc---cc---CCCcCCCcEEEEee
Q 017184          284 RQADIIISAVGQPNM---VR---GSWIKPGAVIIDVG  314 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~---I~---~~~vk~gavVIDvg  314 (375)
                      ++||+||.+++....   +.   ...+ +|.+|||++
T Consensus        89 ~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           89 AGAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             hcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            789999999986542   21   2234 799999998

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.60  E-value=6.1e-05  Score=72.44  Aligned_cols=76  Identities=18%  Similarity=0.375  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----ccC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----VRG  301 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I~~  301 (375)
                      .+.++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +..
T Consensus        29 ~~~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSM-GLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            35689999999886 9999999999999999998762              4677888999999999986532    221


Q ss_pred             ----CCcCCCcEEEEeeec
Q 017184          302 ----SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ----~~vk~gavVIDvgin  316 (375)
                          +.+++|.+|||++..
T Consensus       108 ~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence                246889999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.58  E-value=4.2e-05  Score=71.95  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----c-c-C-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----V-R-G-  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I-~-~-  301 (375)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    + . . 
T Consensus         2 ~~i~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIM-GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            68999999885 9999999999999999998763              3667788899999999986532    2 1 1 


Q ss_pred             --CCcCCCcEEEEeeec
Q 017184          302 --SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 --~~vk~gavVIDvgin  316 (375)
                        +.+++|.+|||.+..
T Consensus        81 l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEeCCCC
Confidence              246889999999753

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.56  E-value=0.00048  Score=70.51  Aligned_cols=189  Identities=19%  Similarity=0.249  Sum_probs=133.4

Q ss_pred             CceEEEEEeCCC--------c-chHHHHHHHHHHHHHc-CCeEEEEeCCCCC-----CHHHHHHHHHHhhcCCCccEEEE
Q 017184          114 VPGLAVILVGDR--------K-DSATYVRNKKKACQSV-GINSFEVHLPEDT-----SEQEVLKHISVFNDDPSVHGILV  178 (375)
Q Consensus       114 ~P~LaiI~vG~d--------~-aS~~Yv~~k~k~a~~~-GI~~~~~~l~~~v-----s~~el~~~I~~LN~D~~V~GIlV  178 (375)
                      -..++||-=|+.        + ++.--...|.-.+..+ ||++.-+.|+...     +.+|+.+.++.+-  |++-||+.
T Consensus        90 gn~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~--P~fG~Inl  167 (487)
T 3nv9_A           90 GNFVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQ--HTFGAINL  167 (487)
T ss_dssp             GGEEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHG--GGCSEEEE
T ss_pred             CCEEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhC--CCCCeecH
Confidence            456777765554        2 4566667888888876 7999999997431     4789999999886  67778664


Q ss_pred             eCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHH
Q 017184          179 QLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA  258 (375)
Q Consensus       179 qlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpl  258 (375)
                      .=  -..-+--++++....+-|+.-||.-          ..+-.-+|-.|++..|+-.+.+++.-++|+.|+|.. |-.+
T Consensus       168 ED--f~ap~af~il~ryr~~~~ipvFnDD----------~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA-Gigi  234 (487)
T 3nv9_A          168 ED--ISQPNCYKILDVLRESCDIPVWHDD----------QQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS-NTTC  234 (487)
T ss_dssp             CS--CCTTHHHHHHHHHHHHCSSCEEETT----------THHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH-HHHH
T ss_pred             hh--cCCchHHHHHHHHHhhccCCccccc----------cchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHH
Confidence            31  1111223344444222244444422          333334456788999999999999999999999987 9999


Q ss_pred             HHHHhhCCC---eEEEEcCC------------------------------CCCHHhhccCCcEEEEccCC-CCcccCCCc
Q 017184          259 ALLLQREDA---TVSIVHSR------------------------------TKNPEEITRQADIIISAVGQ-PNMVRGSWI  304 (375)
Q Consensus       259 a~lL~~~gA---tVtv~hs~------------------------------t~~L~~~l~~ADIVIsAvG~-p~~I~~~~v  304 (375)
                      +.+|...|.   .+++|+++                              ..+|.+.++.+|++|-..+. |+.++++||
T Consensus       235 a~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V  314 (487)
T 3nv9_A          235 LRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWI  314 (487)
T ss_dssp             HHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHH
T ss_pred             HHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHH
Confidence            999999998   69999764                              12467888999999966633 899999988


Q ss_pred             C---CCcEEEEeeecCC
Q 017184          305 K---PGAVIIDVGINPV  318 (375)
Q Consensus       305 k---~gavVIDvgin~~  318 (375)
                      +   +.-+|+-+. ||.
T Consensus       315 ~~Ma~~PIIFaLS-NPt  330 (487)
T 3nv9_A          315 KSMGEKPIVFCCA-NPV  330 (487)
T ss_dssp             HTSCSSCEEEECC-SSS
T ss_pred             HhhcCCCEEEECC-CCC
Confidence            5   477888887 554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.53  E-value=0.00011  Score=69.82  Aligned_cols=72  Identities=26%  Similarity=0.307  Sum_probs=58.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCccc------CC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNMVR------GS  302 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~I~------~~  302 (375)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++++..+ +|+||.+++.+..+.      .+
T Consensus        16 ~~I~vIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~   93 (296)
T 3qha_A           16 LKLGYIGLGNM-GAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG   93 (296)
T ss_dssp             CCEEEECCSTT-HHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence            68999999885 9999999999999999998763              35677788 999999999653221      24


Q ss_pred             CcCCCcEEEEeeec
Q 017184          303 WIKPGAVIIDVGIN  316 (375)
Q Consensus       303 ~vk~gavVIDvgin  316 (375)
                      .+++|.+|||.+..
T Consensus        94 ~l~~g~ivv~~st~  107 (296)
T 3qha_A           94 HAKPGTVIAIHSTI  107 (296)
T ss_dssp             TCCTTCEEEECSCC
T ss_pred             hcCCCCEEEEeCCC
Confidence            67899999998854

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.50  E-value=6.7e-05  Score=71.78  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----c-c-
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----V-R-  300 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I-~-  300 (375)
                      +-++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    + . 
T Consensus        20 ~m~~I~iIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           20 HMMEVGFLGLGIM-GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             cCCEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            4578999999885 9999999999999999998763              3567788899999999987632    2 1 


Q ss_pred             C---CCcCCCcEEEEeeec
Q 017184          301 G---SWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 ~---~~vk~gavVIDvgin  316 (375)
                      .   +.+++|.+|||++..
T Consensus        99 ~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCC
T ss_pred             hhhhhccCCCCEEEECCCC
Confidence            1   356889999998854

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.49  E-value=9.9e-05  Score=73.34  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=62.2

Q ss_pred             cCCHHHHH----HHHHH-hCC-CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH--------------Hhh
Q 017184          223 PCTPKGCI----ELLHR-YGF-DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP--------------EEI  282 (375)
Q Consensus       223 PcT~~gvi----~lL~~-~~i-~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L--------------~~~  282 (375)
                      +.|+.|+.    +++++ .+. +++||+|+|+|.|++ |..++..|.+.|++|++++++...+              .+.
T Consensus       148 ~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~V-G~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~l  226 (364)
T 1leh_A          148 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI  226 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHH
Confidence            56777754    55555 476 899999999999995 9999999999999999888653222              222


Q ss_pred             c-cCCcEEEEccCCCCcccCCCcCC-Cc-EEEEee
Q 017184          283 T-RQADIIISAVGQPNMVRGSWIKP-GA-VIIDVG  314 (375)
Q Consensus       283 l-~~ADIVIsAvG~p~~I~~~~vk~-ga-vVIDvg  314 (375)
                      + .++||+|.++ ..+.|+.+.++. ++ +|++.+
T Consensus       227 l~~~~DIvip~a-~~~~I~~~~~~~lg~~iV~e~A  260 (364)
T 1leh_A          227 YGVTCDIFAPCA-LGAVLNDFTIPQLKAKVIAGSA  260 (364)
T ss_dssp             TTCCCSEEEECS-CSCCBSTTHHHHCCCSEECCSC
T ss_pred             hccCCcEeeccc-hHHHhCHHHHHhCCCcEEEeCC
Confidence            2 3889999875 334666554322 33 444444

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.47  E-value=0.00017  Score=69.33  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=59.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----c-cC--
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----V-RG--  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I-~~--  301 (375)
                      |+|-+||-|.+ |.|+|..|++.|.+|++++++.              .++.+..+++|+||+.++.+.-    + ..  
T Consensus         4 ~kIgfIGlG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            4 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             CEEEEeeehHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            68999999986 9999999999999999999873              4678889999999999986542    1 22  


Q ss_pred             --CCcCCCcEEEEeeec
Q 017184          302 --SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 --~~vk~gavVIDvgin  316 (375)
                        +.+++|.++||.+..
T Consensus        83 ~~~~~~~g~iiId~sT~   99 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTI   99 (300)
T ss_dssp             STTSCCC-CEEEECSCC
T ss_pred             hhhcCCCCCEEEECCCC
Confidence              346789999999865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.44  E-value=6.9e-05  Score=70.51  Aligned_cols=73  Identities=23%  Similarity=0.295  Sum_probs=59.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cc---c-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MV---R-  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I---~-  300 (375)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+   . 
T Consensus         2 ~~I~iiG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            2 TTYGFLGLGIM-GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            57999999885 9999999999999999998763              366778889999999999763    22   1 


Q ss_pred             -CCCcCCCcEEEEeeec
Q 017184          301 -GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 -~~~vk~gavVIDvgin  316 (375)
                       .+.+++|.+|||.+..
T Consensus        81 l~~~l~~g~~vv~~st~   97 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTV   97 (287)
T ss_dssp             GGGTCCTTCEEEECSCC
T ss_pred             hhhcccCCCEEEECCCC
Confidence             1356889999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.41  E-value=9.7e-05  Score=70.21  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------CCCHHhhccCCcEEEEccCCCCc----c---
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------TKNPEEITRQADIIISAVGQPNM----V---  299 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------t~~L~~~l~~ADIVIsAvG~p~~----I---  299 (375)
                      .++|.|||.|.+ |.+++..|.+.|.+|++++++               +.++.+.++++|+||.+++.+..    +   
T Consensus         7 ~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            7 DFHVGIVGLGSM-GMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCeEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            468999999885 999999999999999999875               23566778899999999997531    2   


Q ss_pred             c--CCCcCCCcEEEEeeec
Q 017184          300 R--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       300 ~--~~~vk~gavVIDvgin  316 (375)
                      .  .+.+++|.+|||++..
T Consensus        86 ~~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence            1  1356889999999854

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.40  E-value=0.00018  Score=71.01  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCC---cEEEEccCCCCc---c
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQA---DIIISAVGQPNM---V  299 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~A---DIVIsAvG~p~~---I  299 (375)
                      +++++|.|||.|.+ |.+++..|++.|.+|++++++.              .++++.++++   |+||.+++.+..   +
T Consensus        20 m~~mkIgiIGlG~m-G~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRM-GADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            46789999999885 9999999999999999998762              4677777788   999999987631   1


Q ss_pred             c--CCCcCCCcEEEEeeecC
Q 017184          300 R--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~--~~~vk~gavVIDvgin~  317 (375)
                      .  ...+++|.+|||++...
T Consensus        99 ~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHhhCCCCCEEEeCCCCC
Confidence            1  23578899999998543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.40  E-value=9.3e-05  Score=70.75  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------CCCHHhhccCCcEEEEccCCCC----ccc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITRQADIIISAVGQPN----MVR  300 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------t~~L~~~l~~ADIVIsAvG~p~----~I~  300 (375)
                      ....++|.|||.|.+ |.+++..|.+.|.+|++++++              ..++.+.++++|+||.+++.+.    .+.
T Consensus         6 ~~~~~~IgiIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAM-GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            456789999999886 999999999999999999876              2467788899999999998654    232


Q ss_pred             CC---CcCCCcEEEEeeec
Q 017184          301 GS---WIKPGAVIIDVGIN  316 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin  316 (375)
                      .+   .+++|.+|||++..
T Consensus        85 ~~~l~~~~~g~ivid~st~  103 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTN  103 (306)
T ss_dssp             STTHHHHTTTCEEEECCCC
T ss_pred             ccchhhccCCCEEEECCCC
Confidence            11   24689999999754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.33  E-value=0.00012  Score=71.39  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------CHHhhccCCcEEEEccCCCC---ccc--
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------NPEEITRQADIIISAVGQPN---MVR--  300 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------~L~~~l~~ADIVIsAvG~p~---~I~--  300 (375)
                      +++++|.|||.|.+ |..++..|.+.|.+|+++.++..              ++.+.+++||+||.+++...   ++.  
T Consensus        14 l~~~~I~IIG~G~m-G~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            45789999999886 99999999999999999887642              35567889999999998532   333  


Q ss_pred             -CCCcCCCcEEEEee
Q 017184          301 -GSWIKPGAVIIDVG  314 (375)
Q Consensus       301 -~~~vk~gavVIDvg  314 (375)
                       ...+++|++|+|++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence             24578999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.33  E-value=0.00021  Score=68.08  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=58.8

Q ss_pred             CCEEEEEc-CCcccHHHHHHHHhhCCCeEEEEcCCCC-CHHhhccCCcEEEEccCCCCc---cc--CCCcCCCcEEEEee
Q 017184          242 GKRAVVIG-RSNIVGMPAALLLQREDATVSIVHSRTK-NPEEITRQADIIISAVGQPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       242 GK~vvVIG-rs~~VGkpla~lL~~~gAtVtv~hs~t~-~L~~~l~~ADIVIsAvG~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      .++|.||| .|.+ |.+++..|.+.|.+|++++++.. +..+.+++||+||.+++....   +.  ...++++++|+|++
T Consensus        21 ~~~I~iIGg~G~m-G~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           21 IHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             CCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CCEEEEEcCCCHH-HHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            46899999 8775 99999999999999999987643 577889999999999986442   21  23578899999986


Q ss_pred             e
Q 017184          315 I  315 (375)
Q Consensus       315 i  315 (375)
                      .
T Consensus       100 s  100 (298)
T 2pv7_A          100 S  100 (298)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.32  E-value=0.00024  Score=68.07  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=56.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCcc----cC---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNMV----RG---  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~I----~~---  301 (375)
                      +||-+||-|.+ |.|+|..|++.|.+|++++++.              .++.+..+++|+||+.++.+..+    ..   
T Consensus         6 ~kIgfIGLG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNL-GTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            57999999986 9999999999999999998763              35678899999999999865422    11   


Q ss_pred             CCcCCCcEEEEeeec
Q 017184          302 SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 ~~vk~gavVIDvgin  316 (375)
                      ...++|.++||.+..
T Consensus        85 ~~~~~~~iiid~sT~   99 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTI   99 (297)
T ss_dssp             HHHCTTCEEEECSCC
T ss_pred             hhcCCCeEEEECCCC
Confidence            235788899998764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.30  E-value=0.00019  Score=69.28  Aligned_cols=75  Identities=12%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC----------------CCHHh-hccCCcEEEEccCCCCc---
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT----------------KNPEE-ITRQADIIISAVGQPNM---  298 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t----------------~~L~~-~l~~ADIVIsAvG~p~~---  298 (375)
                      ..++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+ .+++||+||.+++....   
T Consensus        32 ~~~kI~IIG~G~m-G~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             CCCEEEEEeeCHH-HHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            3479999999886 9999999999998  999998752                35667 78999999999985432   


Q ss_pred             cc--CCCcCCCcEEEEeeec
Q 017184          299 VR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 I~--~~~vk~gavVIDvgin  316 (375)
                      +.  ...++++++|+|++..
T Consensus       111 l~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHhhccCCCcEEEECCCC
Confidence            21  1357899999999743

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.30  E-value=0.0003  Score=65.42  Aligned_cols=121  Identities=21%  Similarity=0.338  Sum_probs=71.8

Q ss_pred             HHHHHHHHh--CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-C-----------------HHhhccCCc
Q 017184          228 GCIELLHRY--GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-N-----------------PEEITRQAD  287 (375)
Q Consensus       228 gvi~lL~~~--~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-~-----------------L~~~l~~AD  287 (375)
                      |-++.+++|  .++++||+|+|||.|.+ |...+..|++.||.|+++..... +                 ..+.+..+|
T Consensus        15 ~~~~~~~~~Pifl~L~gk~VLVVGgG~v-a~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~ad   93 (223)
T 3dfz_A           15 GHIEGRHMYTVMLDLKGRSVLVVGGGTI-ATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVF   93 (223)
T ss_dssp             -------CCEEEECCTTCCEEEECCSHH-HHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCS
T ss_pred             CcccccCccccEEEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCC
Confidence            445555554  35899999999999985 99999999999999999865421 1                 124578899


Q ss_pred             EEEEccCCCCc---ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhh---hcceeccCCCCccHHHHHHHH
Q 017184          288 IIISAVGQPNM---VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE---VASAITPVPGGVGPMTIAMLL  361 (375)
Q Consensus       288 IVIsAvG~p~~---I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~---~a~~iTPVPGGVGp~T~amLl  361 (375)
                      +||+|++.+..   |... -+.| +.|++.-+|..           +|+-|.++.+   ..-+|+  -||-+|..+..|=
T Consensus        94 LVIaAT~d~~~N~~I~~~-ak~g-i~VNvvD~p~~-----------~~f~~Paiv~rg~l~iaIS--T~G~sP~la~~iR  158 (223)
T 3dfz_A           94 FIVVATNDQAVNKFVKQH-IKND-QLVNMASSFSD-----------GNIQIPAQFSRGRLSLAIS--TDGASPLLTKRIK  158 (223)
T ss_dssp             EEEECCCCTHHHHHHHHH-SCTT-CEEEC-----C-----------CSEECCEEEEETTEEEEEE--CTTSCHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHH-HhCC-CEEEEeCCccc-----------CeEEEeeEEEeCCEEEEEE--CCCCCcHHHHHHH
Confidence            99999998863   3222 2334 44555534321           2222222211   223343  4889998877765


Q ss_pred             HHH
Q 017184          362 SNT  364 (375)
Q Consensus       362 ~N~  364 (375)
                      +.+
T Consensus       159 ~~i  161 (223)
T 3dfz_A          159 EDL  161 (223)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.0002  Score=69.02  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC-------------------C-CHHhhccCCcEEEEccCCCCccc-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT-------------------K-NPEEITRQADIIISAVGQPNMVR-  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t-------------------~-~L~~~l~~ADIVIsAvG~p~~I~-  300 (375)
                      ++|.|||.|.+ |.+++..|++.| .+|++++++.                   . ++.+.+++||+||.+++.+...+ 
T Consensus        25 m~IgvIG~G~m-G~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEA-AQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHH-HHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999885 999999999999 9999998763                   2 56677889999999998764321 


Q ss_pred             ----CCCcCCCcEEEEeee
Q 017184          301 ----GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 ----~~~vk~gavVIDvgi  315 (375)
                          .+.+++|.+|||++.
T Consensus       104 ~~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCS
T ss_pred             HHHHHhhcCCCCEEEECCC
Confidence                235788999999874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.28  E-value=0.00029  Score=67.53  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC----------------CCCHHhhccCCcEEEEccCCCCcc---c-
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR----------------TKNPEEITRQADIIISAVGQPNMV---R-  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~----------------t~~L~~~l~~ADIVIsAvG~p~~I---~-  300 (375)
                      .++|.|||.|.+ |.+++..|.+.|. +|++++++                +.++.+.++++|+||.+++.+..+   . 
T Consensus        24 ~~~I~iIG~G~m-G~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           24 AMKLGFIGFGEA-ASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            478999999885 9999999999999 99999985                136678889999999999976532   1 


Q ss_pred             -CCCcCCCcEEEEeeec
Q 017184          301 -GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 -~~~vk~gavVIDvgin  316 (375)
                       .+.+++|.+|||+...
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence             2456788999988643

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.22  E-value=0.00026  Score=66.25  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=55.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cccC----
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVRG----  301 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~~----  301 (375)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..    
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNM-GNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTT-HHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             eEEEEeccHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            6899999886 9999999999999999998752              356677889999999998763    2221    


Q ss_pred             -CCcCCCcEEEEee
Q 017184          302 -SWIKPGAVIIDVG  314 (375)
Q Consensus       302 -~~vk~gavVIDvg  314 (375)
                       +++++|.+|||..
T Consensus        81 ~~~l~~~~~vv~~s   94 (296)
T 2gf2_A           81 LKKVKKGSLLIDSS   94 (296)
T ss_dssp             GGTCCTTCEEEECS
T ss_pred             HhcCCCCCEEEECC
Confidence             2568899999954

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.18  E-value=0.00023  Score=66.10  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC-------------HHhhccCCcEEEEccCCCCc----cc--CCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN-------------PEEITRQADIIISAVGQPNM----VR--GSW  303 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~-------------L~~~l~~ADIVIsAvG~p~~----I~--~~~  303 (375)
                      ++|.|||.|.+ |..++..|.+ |.+|++++++...             +.+.++++|+||.+++.+..    +.  .++
T Consensus         2 ~~i~iiG~G~~-G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAM-GYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHH-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            46999999885 9999999999 9999999876321             34557789999999997642    21  256


Q ss_pred             cCCCcEEEEeee
Q 017184          304 IKPGAVIIDVGI  315 (375)
Q Consensus       304 vk~gavVIDvgi  315 (375)
                      +++|.+|||++.
T Consensus        80 l~~~~~vv~~s~   91 (289)
T 2cvz_A           80 LREGTYWVDATS   91 (289)
T ss_dssp             CCTTEEEEECSC
T ss_pred             CCCCCEEEECCC
Confidence            788999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.16  E-value=0.00027  Score=67.11  Aligned_cols=71  Identities=25%  Similarity=0.454  Sum_probs=57.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cccC---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVRG---  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~~---  301 (375)
                      +++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..   
T Consensus        31 ~~I~iIG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLM-GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEcccHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            67999999885 9999999999999999998753              245567788999999999543    2222   


Q ss_pred             --CCcCCCcEEEEee
Q 017184          302 --SWIKPGAVIIDVG  314 (375)
Q Consensus       302 --~~vk~gavVIDvg  314 (375)
                        +++++|.+|||++
T Consensus       110 ~~~~l~~~~~vv~~s  124 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMS  124 (316)
T ss_dssp             GGGGCCTTCEEEECS
T ss_pred             HhhcCCCCCEEEECC
Confidence              4678899999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.15  E-value=0.00039  Score=55.22  Aligned_cols=73  Identities=19%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCCCc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTK---------------------NPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      .+++++|+|.|. +|+.++..|.+.| .+|+++.++..                     ++.+.++++|+||.++|....
T Consensus         4 ~~~~v~I~G~G~-iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGK-IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSH-HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            478999999965 5999999999999 79999877531                     234556788888888863211


Q ss_pred             --ccCCCcCCCcEEEEee
Q 017184          299 --VRGSWIKPGAVIIDVG  314 (375)
Q Consensus       299 --I~~~~vk~gavVIDvg  314 (375)
                        +-....+.|.-.+|+.
T Consensus        83 ~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHhCCCEEEec
Confidence              1112234566666654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.11  E-value=0.00074  Score=60.70  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH--------------------HhhccCCcEEEEccCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP--------------------EEITRQADIIISAVGQ  295 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L--------------------~~~l~~ADIVIsAvG~  295 (375)
                      .+++||+|+|.|+++-+|+.++..|+++|++|+++.|+...+                    .+.+...|+||..+|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            357899999999988899999999999999999998764322                    3445566777766664

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.09  E-value=0.00038  Score=65.30  Aligned_cols=72  Identities=28%  Similarity=0.433  Sum_probs=57.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----cccC---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVRG---  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~~---  301 (375)
                      +++.|||.|.+ |..++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..   
T Consensus         5 ~~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            5 IKIGFIGLGAM-GKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CEEEEECCCTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            58999999885 9999999999999999997752              356677888999999998764    2321   


Q ss_pred             --CCcCCCcEEEEeee
Q 017184          302 --SWIKPGAVIIDVGI  315 (375)
Q Consensus       302 --~~vk~gavVIDvgi  315 (375)
                        .++++|.+|||+..
T Consensus        84 l~~~l~~~~~vv~~~~   99 (301)
T 3cky_A           84 VLSACKAGTVIVDMSS   99 (301)
T ss_dssp             HHHHSCTTCEEEECCC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              25688999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.08  E-value=0.00074  Score=61.04  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=53.1

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCC---cccC--CCcCCCcEE
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPN---MVRG--SWIKPGAVI  310 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~---~I~~--~~vk~gavV  310 (375)
                      .+.++.++++.|||.|.+ |.+++..|.+.|.+|++++++..    .+++||+||.+++.+.   ++..  ..++ ++++
T Consensus        13 ~~~~~~~~~I~iiG~G~m-G~~la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~v   86 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNM-GQAIGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIV   86 (209)
T ss_dssp             -------CEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCC----CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEE
T ss_pred             cccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHH----HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEE
Confidence            456788999999999885 99999999999999999987643    6789999999998322   1211  2356 8899


Q ss_pred             EEeee
Q 017184          311 IDVGI  315 (375)
Q Consensus       311 IDvgi  315 (375)
                      ||+.-
T Consensus        87 i~~~~   91 (209)
T 2raf_A           87 VDITN   91 (209)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99863

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.07  E-value=0.0004  Score=65.04  Aligned_cols=72  Identities=22%  Similarity=0.365  Sum_probs=57.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----ccc--C-
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVR--G-  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~--~-  301 (375)
                      .++.|||.|.+ |..++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         6 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence            47999999885 9999999999999999997752              356677888999999999653    231  1 


Q ss_pred             --CCcCCCcEEEEeee
Q 017184          302 --SWIKPGAVIIDVGI  315 (375)
Q Consensus       302 --~~vk~gavVIDvgi  315 (375)
                        .++++|.+|||++.
T Consensus        85 l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           85 IIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HHHHCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              35688999999863

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.07  E-value=0.00072  Score=62.20  Aligned_cols=69  Identities=25%  Similarity=0.439  Sum_probs=53.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC----eEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCc----c
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA----TVSIVHSRT---------------KNPEEITRQADIIISAVGQPNM----V  299 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA----tVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~----I  299 (375)
                      +++.|||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.++++|+||.++ .|..    +
T Consensus         3 ~~i~iIG~G~m-G~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav-~~~~~~~v~   80 (247)
T 3gt0_A            3 KQIGFIGCGNM-GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI-KPDLYASII   80 (247)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS-CTTTHHHHC
T ss_pred             CeEEEECccHH-HHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe-CHHHHHHHH
Confidence            57999999886 9999999999997    999998762               35667788999999999 4542    2


Q ss_pred             c--CCCcCCCcEEEEe
Q 017184          300 R--GSWIKPGAVIIDV  313 (375)
Q Consensus       300 ~--~~~vk~gavVIDv  313 (375)
                      .  ..+++++.+||.+
T Consensus        81 ~~l~~~l~~~~~vvs~   96 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTI   96 (247)
T ss_dssp             ---CCSSCTTCEEEEC
T ss_pred             HHHHhhcCCCCEEEEe
Confidence            1  2356788887743

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00014  Score=74.21  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCCC----------------------CHHhhccCCcEEEEcc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRTK----------------------NPEEITRQADIIISAV  293 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t~----------------------~L~~~l~~ADIVIsAv  293 (375)
                      +.++++|+|+|+|+|++ |++++..|++. +++|++++|+..                      ++.+.++++|+||+++
T Consensus        18 ~~~l~~k~VlIiGAGgi-G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFV-AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             -----CEEEEEECCSTT-HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             ccCCCCCEEEEECChHH-HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            56788999999999875 99999999988 679999987521                      2335567899999999


Q ss_pred             CCCCc--ccCCCcCCCcEEEEeee
Q 017184          294 GQPNM--VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       294 G~p~~--I~~~~vk~gavVIDvgi  315 (375)
                      |....  +....++.|..++|+.+
T Consensus        97 p~~~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           97 PYTFHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECSC
T ss_pred             chhhhHHHHHHHHhcCCEEEEeec
Confidence            85321  33445677888999865

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.06  E-value=0.00063  Score=69.57  Aligned_cols=79  Identities=22%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------CCHHhhccC---CcEEEEccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------KNPEEITRQ---ADIIISAVGQ  295 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------~~L~~~l~~---ADIVIsAvG~  295 (375)
                      ......++|.|||.|.+ |.+++..|++.|.+|++++++.                  .++++.++.   +|+||.+++.
T Consensus        10 ~~~~~~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   88 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVM-GRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKA   88 (480)
T ss_dssp             -----CBSEEEECCSHH-HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCS
T ss_pred             ccccCCCeEEEEccHHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCC
Confidence            34567889999999885 9999999999999999998752                  245566665   9999999987


Q ss_pred             CCc----cc--CCCcCCCcEEEEeeec
Q 017184          296 PNM----VR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       296 p~~----I~--~~~vk~gavVIDvgin  316 (375)
                      +..    +.  ...+++|.+|||++..
T Consensus        89 ~~~v~~vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           89 GAGTDAAIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             SSHHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            542    21  1357889999999843

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.02  E-value=0.00077  Score=62.88  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCC----ccc----
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPN----MVR----  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~----~I~----  300 (375)
                      .++.|||.|.+ |.+++..|.+.|.+|++++ +.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIM-GSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTT-HHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CEEEEEccCHH-HHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            47999999886 9999999999999999887 42              245667889999999998764    232    


Q ss_pred             -CCCcCCCcEEEEeee
Q 017184          301 -GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 -~~~vk~gavVIDvgi  315 (375)
                       ..++++|.+|||+..
T Consensus        82 l~~~l~~~~~vv~~s~   97 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSS   97 (295)
T ss_dssp             STTSCCTTEEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence             135788999999863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.00  E-value=0.00046  Score=64.28  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC----------------CCCHHhhcc-CCcEEEEccCCCCc---cc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR----------------TKNPEEITR-QADIIISAVGQPNM---VR  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~----------------t~~L~~~l~-~ADIVIsAvG~p~~---I~  300 (375)
                      ++|.|||.|.+ |..++..|.+.|.  +|++++++                +.++.+.++ ++|+||.+++....   +.
T Consensus         2 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (281)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             cEEEEEecCHH-HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH
Confidence            57999999885 9999999999997  89998764                235667788 99999999985432   22


Q ss_pred             --CCCcCCCcEEEEeee
Q 017184          301 --GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 --~~~vk~gavVIDvgi  315 (375)
                        ..+++++.+|+|++.
T Consensus        81 ~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHSCTTCEEEECCS
T ss_pred             HHHhhCCCCcEEEECCC
Confidence              135688999999873

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.93  E-value=0.00049  Score=63.58  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCCC---------------CCHHhhccCCcEEEEccCCCC---ccc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT---------------KNPEEITRQADIIISAVGQPN---MVR  300 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~---~I~  300 (375)
                      +.+.++.|||.|.+ |..++..|.+.|.+ |++++++.               .++.+.++++|+||.+++...   ++.
T Consensus         8 ~~~m~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNL-ATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ   86 (266)
T ss_dssp             GGGCCEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHH-HHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH
Confidence            44678999999875 99999999999988 88887652               356677889999999998542   221


Q ss_pred             --CCCcCCCcEEEEeee
Q 017184          301 --GSWIKPGAVIIDVGI  315 (375)
Q Consensus       301 --~~~vk~gavVIDvgi  315 (375)
                        ...++++.+|||+..
T Consensus        87 ~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHTTCCTTCEEEECCT
T ss_pred             HHHhhcCCCcEEEECCC
Confidence              135678999999853

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.91  E-value=0.0006  Score=61.79  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhccCCcEEEEccCCCC---ccc-CCCc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITRQADIIISAVGQPN---MVR-GSWI  304 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~~ADIVIsAvG~p~---~I~-~~~v  304 (375)
                      ++++.|||.|.+ |+.++..|.+.|.+|++++++..             ++.+.++++|+||.+++...   ++. ....
T Consensus        28 ~~~I~iiG~G~~-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~  106 (215)
T 2vns_A           28 APKVGILGSGDF-ARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQL  106 (215)
T ss_dssp             -CCEEEECCSHH-HHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGGGHHHH
T ss_pred             CCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHHHHHhc
Confidence            468999998875 99999999999999999987632             35567889999999998432   121 0122


Q ss_pred             CCCcEEEEeeec
Q 017184          305 KPGAVIIDVGIN  316 (375)
Q Consensus       305 k~gavVIDvgin  316 (375)
                       ++.+|||+...
T Consensus       107 -~~~~vv~~s~g  117 (215)
T 2vns_A          107 -AGKILVDVSNP  117 (215)
T ss_dssp             -TTCEEEECCCC
T ss_pred             -CCCEEEEeCCC
Confidence             78999999843

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.96  E-value=0.00014  Score=65.82  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------CHHhhccCCcEEEEccCCCCc---ccCCCc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITRQADIIISAVGQPNM---VRGSWI  304 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~L~~~l~~ADIVIsAvG~p~~---I~~~~v  304 (375)
                      +.++++.|||.|.+ |.+++..|.+.|.+|++++++..            ++.+.++++|+||.++....+   +.-...
T Consensus        17 ~~~~~I~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~~l~~~   95 (201)
T 2yjz_A           17 EKQGVVCIFGTGDF-GKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLAELADS   95 (201)
Confidence            56789999999886 99999999999999998876532            344567889999999985432   211123


Q ss_pred             CCCcEEEEeee
Q 017184          305 KPGAVIIDVGI  315 (375)
Q Consensus       305 k~gavVIDvgi  315 (375)
                      +++.+|||+.-
T Consensus        96 ~~~~ivI~~~~  106 (201)
T 2yjz_A           96 LKGRVLIDVSN  106 (201)
Confidence            56889999873

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.88  E-value=0.00086  Score=62.28  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCC---ccc--CC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------KNPEEITRQADIIISAVGQPN---MVR--GS  302 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~---~I~--~~  302 (375)
                      ++.|||.|.+ |..++..|.+.|.+|++++++.                .++.+. +++|+||.+++...   ++.  ..
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            6899999885 9999999999999999997652                245566 89999999998432   222  24


Q ss_pred             CcCCCcEEEEee
Q 017184          303 WIKPGAVIIDVG  314 (375)
Q Consensus       303 ~vk~gavVIDvg  314 (375)
                      +++++.+|+|++
T Consensus        80 ~~~~~~~vv~~~   91 (279)
T 2f1k_A           80 HLSPTAIVTDVA   91 (279)
T ss_dssp             GSCTTCEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            578899999985

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.88  E-value=0.0014  Score=60.31  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCcccC--CCcC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------KNPEEITRQADIIISAVGQPNMVRG--SWIK  305 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~I~~--~~vk  305 (375)
                      .++.|||.|.+ |++++..|.+.|..|++++++.               .++.+.++++|+||.+++ |..+..  ..++
T Consensus         4 m~i~iiG~G~m-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHhc
Confidence            47999999885 9999999999999999998752               356677889999999998 442210  1245


Q ss_pred             CCcEEEEe
Q 017184          306 PGAVIIDV  313 (375)
Q Consensus       306 ~gavVIDv  313 (375)
                      +|.++||+
T Consensus        82 ~~~~vv~~   89 (259)
T 2ahr_A           82 FKQPIISM   89 (259)
T ss_dssp             CCSCEEEC
T ss_pred             cCCEEEEe
Confidence            77788887

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.82  E-value=0.0011  Score=62.37  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------------------------CCHHhhc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------------------------KNPEEIT  283 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------------------------~~L~~~l  283 (375)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++.                                       .++.+.+
T Consensus         5 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVL-GSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            78999999885 9999999999999999997652                                       2345678


Q ss_pred             cCCcEEEEccCCCC-----ccc--CCCcCCCcEEEEee
Q 017184          284 RQADIIISAVGQPN-----MVR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       284 ~~ADIVIsAvG~p~-----~I~--~~~vk~gavVIDvg  314 (375)
                      ++||+||.+++...     ++.  ...++++++++|..
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            89999999998531     111  12467888888754

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.81  E-value=0.0025  Score=63.15  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             ccCCHHHHH----HHHHHhCC-CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhc
Q 017184          222 IPCTPKGCI----ELLHRYGF-DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEIT  283 (375)
Q Consensus       222 ~PcT~~gvi----~lL~~~~i-~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l  283 (375)
                      .+.|.+|++    +.+++.+. +++||+|+|+|.|++ |+.++..|...|++|++++++..             +..+.+
T Consensus       150 ~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnV-G~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell  228 (355)
T 1c1d_A          150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVL  228 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGG
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhh
Confidence            367888875    44566788 899999999999995 99999999999999997765421             223444


Q ss_pred             c-CCcEEEEccCCCCcccCCC---cCCCcEEEEeee
Q 017184          284 R-QADIIISAVGQPNMVRGSW---IKPGAVIIDVGI  315 (375)
Q Consensus       284 ~-~ADIVIsAvG~p~~I~~~~---vk~gavVIDvgi  315 (375)
                      . ++||++.+. ..+.|+.+.   ++ ..+|++.+-
T Consensus       229 ~~~~DIliP~A-~~~~I~~~~~~~lk-~~iVie~AN  262 (355)
T 1c1d_A          229 STPCDVFAPCA-MGGVITTEVARTLD-CSVVAGAAN  262 (355)
T ss_dssp             GCCCSEEEECS-CSCCBCHHHHHHCC-CSEECCSCT
T ss_pred             cCccceecHhH-HHhhcCHHHHhhCC-CCEEEECCC
Confidence            4 889998643 456676543   34 567777663

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.76  E-value=0.0048  Score=62.48  Aligned_cols=77  Identities=23%  Similarity=0.384  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------CCHHhh---------------ccCCcEE
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------KNPEEI---------------TRQADII  289 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------~~L~~~---------------l~~ADIV  289 (375)
                      -+|.+..|||.|. ||.|+|..|++.|.+|++.+++.               +.+++.               +++||+|
T Consensus         9 ~~~~~~~ViGlGy-vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGY-IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            4799999999988 59999999999999999997652               122221               4579999


Q ss_pred             EEccCCCCccc-----------------CCCcCCCcEEEEeeecC
Q 017184          290 ISAVGQPNMVR-----------------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       290 IsAvG~p~~I~-----------------~~~vk~gavVIDvgin~  317 (375)
                      |.++|.|.-..                 .+.+++|++|||...-+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~  132 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA  132 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            99999875211                 13568899999876543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.71  E-value=0.0019  Score=57.77  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCCC---------------------CHHhhccCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRTK---------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      ++||+++|.|+++-+|+.++..|+++|+  +|+++.|+..                     ++.+.++..|+||.++|..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5789999999988889999999999999  9999876531                     2345567889999998853

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.70  E-value=0.0014  Score=62.96  Aligned_cols=71  Identities=14%  Similarity=0.277  Sum_probs=54.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCCC----------------CHHhhccCCcEEEEccCCCCccc-
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRTK----------------NPEEITRQADIIISAVGQPNMVR-  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t~----------------~L~~~l~~ADIVIsAvG~p~~I~-  300 (375)
                      ..+|.|||.|.+ |.+++..|.+.|    .+|++++++..                +..+.++++|+||.++. |..+. 
T Consensus        22 ~mkI~iIG~G~m-G~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~   99 (322)
T 2izz_A           22 SMSVGFIGAGQL-AFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF   99 (322)
T ss_dssp             CCCEEEESCSHH-HHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence            357999999885 999999999998    68999987642                34456778999999998 44221 


Q ss_pred             -----CCCcCCCcEEEEee
Q 017184          301 -----GSWIKPGAVIIDVG  314 (375)
Q Consensus       301 -----~~~vk~gavVIDvg  314 (375)
                           ...++++.+|||+.
T Consensus       100 vl~~l~~~l~~~~ivvs~s  118 (322)
T 2izz_A          100 ILDEIGADIEDRHIVVSCA  118 (322)
T ss_dssp             HHHHHGGGCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCCEEEEeC
Confidence                 13567889999984

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.67  E-value=0.0018  Score=65.70  Aligned_cols=72  Identities=26%  Similarity=0.338  Sum_probs=55.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~ADI  288 (375)
                      .+|.|||.|. ||.++|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         3 mkI~VIG~G~-vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGY-VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECcCH-HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            5899999988 49999999999999999987641                                  244566889999


Q ss_pred             EEEccCCCC---------ccc------CCCcCCCcEEEEeee
Q 017184          289 IISAVGQPN---------MVR------GSWIKPGAVIIDVGI  315 (375)
Q Consensus       289 VIsAvG~p~---------~I~------~~~vk~gavVIDvgi  315 (375)
                      ||.+++.|.         .+.      ...+++|.+|||...
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999999872         111      134678888888764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.65  E-value=0.0011  Score=54.21  Aligned_cols=56  Identities=27%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------C---HHhh-ccCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------N---PEEI-TRQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~---L~~~-l~~ADIVIsAvG~p  296 (375)
                      +++++++|+|.|. +|+.++..|.+.|++|+++.++..                  +   +.+. +.++|+||.++|.+
T Consensus         4 ~~~~~v~I~G~G~-iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGR-FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSH-HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            5688999999966 599999999999999988865411                  1   1122 56789999888865

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.62  E-value=0.002  Score=66.19  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhcc---CCcEEEEccCCCCc-
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEITR---QADIIISAVGQPNM-  298 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l~---~ADIVIsAvG~p~~-  298 (375)
                      .++|.|||.|.+ |.+++..|.+.|.+|++++++.                   .++++.++   ++|+||.+++.+.. 
T Consensus         4 ~~kIgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            4 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CCEEEEEChhHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            367999999885 9999999999999999998763                   24455544   59999999987632 


Q ss_pred             ---cc--CCCcCCCcEEEEeeecC
Q 017184          299 ---VR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       299 ---I~--~~~vk~gavVIDvgin~  317 (375)
                         +.  ...+++|.+|||++...
T Consensus        83 ~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           83 DDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCC
Confidence               21  24678999999998543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.61  E-value=0.0029  Score=61.53  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------H
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------P  279 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L  279 (375)
                      .+||.....+..|++.++...|++|+|+|.|+ ||..+++++...|++|++..+....                     +
T Consensus       167 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~  245 (366)
T 1yqd_A          167 PLLCAGITVYSPLKYFGLDEPGKHIGIVGLGG-LGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQM  245 (366)
T ss_dssp             GGGTHHHHHHHHHHHTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHH
T ss_pred             hhhhhHHHHHHHHHhcCcCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHH
Confidence            34665555667777776655899999999866 6999999999999998877654221                     1


Q ss_pred             HhhccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          280 EEITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .+.+..+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       246 ~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          246 QAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             HHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCC
T ss_pred             HHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccC
Confidence            222346799999999765432  2467888888888864

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.59  E-value=0.0026  Score=59.90  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=46.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------------CHHhhccCCcEEEEcc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------------NPEEITRQADIIISAV  293 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------------~L~~~l~~ADIVIsAv  293 (375)
                      .+|+||.++|-|++.-+|+.++..|+++||+|.++.|...                        ...+..-.-|++|+.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   86 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHML   86 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4789999999999888899999999999999999987531                        1123345679999888


Q ss_pred             CC
Q 017184          294 GQ  295 (375)
Q Consensus       294 G~  295 (375)
                      |.
T Consensus        87 G~   88 (261)
T 4h15_A           87 GG   88 (261)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.57  E-value=0.0031  Score=63.84  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCC---------------------------------CCHHhhccCCc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRT---------------------------------KNPEEITRQAD  287 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t---------------------------------~~L~~~l~~AD  287 (375)
                      ++|.|||.|.+ |.+++..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus         6 mkI~VIG~G~m-G~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            6 KKICCIGAGYV-GGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            58999999885 99999999998  78999997641                                 12344567899


Q ss_pred             EEEEccCCCCccc--------------------CCCcCCCcEEEEeeecC
Q 017184          288 IIISAVGQPNMVR--------------------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       288 IVIsAvG~p~~I~--------------------~~~vk~gavVIDvgin~  317 (375)
                      +||.+++.|.-.+                    ...+++|++|||....+
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  134 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVP  134 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCC
Confidence            9999998765321                    12468899999975443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.55  E-value=0.0026  Score=60.21  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcC--CC-------------------------C--CHHhhccCCcEEEEccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHS--RT-------------------------K--NPEEITRQADIIISAVG  294 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs--~t-------------------------~--~L~~~l~~ADIVIsAvG  294 (375)
                      ++.|||.|.+ |.+++..|.+.|.+|+++++  +.                         .  ++.+.++++|+||.+++
T Consensus         2 ~I~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            6899999885 99999999999999999987  31                         1  34456789999999998


Q ss_pred             CCCc------ccCCCcCCCcEEEEee
Q 017184          295 QPNM------VRGSWIKPGAVIIDVG  314 (375)
Q Consensus       295 ~p~~------I~~~~vk~gavVIDvg  314 (375)
                      .+..      +. . ++++.+|||+.
T Consensus        81 ~~~~~~v~~~i~-~-l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVMSRIL-P-YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHHHHHT-T-TCCSCEEEECC
T ss_pred             hHHHHHHHHHHh-c-CCCCCEEEEEc
Confidence            6542      23 3 78899999983

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.55  E-value=0.0012  Score=61.82  Aligned_cols=72  Identities=11%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             CEEEEEcC-CcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhccCCcEEEEccCCCC---ccc--CCC
Q 017184          243 KRAVVIGR-SNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITRQADIIISAVGQPN---MVR--GSW  303 (375)
Q Consensus       243 K~vvVIGr-s~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~~ADIVIsAvG~p~---~I~--~~~  303 (375)
                      +++.|||. |. +|.+++..|.+.|.+|++++++..             ++.+.++++|+||.+++...   ++.  ...
T Consensus        12 m~I~iIG~tG~-mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGK-MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            58999999 76 599999999999999999987521             34566789999999998432   121  134


Q ss_pred             cCCCcEEEEeee
Q 017184          304 IKPGAVIIDVGI  315 (375)
Q Consensus       304 vk~gavVIDvgi  315 (375)
                      ++++.+|||+..
T Consensus        91 l~~~~ivv~~s~  102 (286)
T 3c24_A           91 VRPGTIVLILDA  102 (286)
T ss_dssp             SCTTCEEEESCS
T ss_pred             CCCCCEEEECCC
Confidence            678999999653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.53  E-value=0.0035  Score=59.25  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=53.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------------------------------CCH
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------------------------------KNP  279 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------------------------------~~L  279 (375)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++.                                           .++
T Consensus        16 ~~I~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999999885 9999999999999999997642                                           234


Q ss_pred             HhhccCCcEEEEccCCCC-----ccc--CCCcCCCcEEEEe
Q 017184          280 EEITRQADIIISAVGQPN-----MVR--GSWIKPGAVIIDV  313 (375)
Q Consensus       280 ~~~l~~ADIVIsAvG~p~-----~I~--~~~vk~gavVIDv  313 (375)
                      .+.+++||+||.+++...     ++.  ...++++++++..
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            456789999999997532     111  2356778888764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0023  Score=65.81  Aligned_cols=73  Identities=18%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhccC---CcEEEEccCCCCc-
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEITRQ---ADIIISAVGQPNM-  298 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l~~---ADIVIsAvG~p~~-  298 (375)
                      .++|.|||.|.+ |.+++..|++.|.+|++++++.                   .++++.++.   +|+||.+++.+.. 
T Consensus        10 ~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           10 SADFGLIGLAVM-GQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCEEEEeeHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            457999999885 9999999999999999998753                   245555555   9999999987532 


Q ss_pred             ---cc--CCCcCCCcEEEEeee
Q 017184          299 ---VR--GSWIKPGAVIIDVGI  315 (375)
Q Consensus       299 ---I~--~~~vk~gavVIDvgi  315 (375)
                         +.  ...+++|.+|||++.
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~  110 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGN  110 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEECCC
Confidence               21  135788999999874

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.53  E-value=0.052  Score=53.08  Aligned_cols=167  Identities=16%  Similarity=0.235  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.- .+.   .-|-+.+.++-|+.-  +|+|.+--|-     . ..++.+.-.-+   +
T Consensus        59 STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~-----~-~~~~~lA~~~~---v  126 (323)
T 3gd5_A           59 STRTRVSFTVAMYQLGGQVIDLSP-SNTQVGRGEPVRDTARVLGRY--VDGLAIRTFA-----Q-TELEEYAHYAG---I  126 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEC-----------CCHHHHHHHHTTT--CSEEEEECSS-----H-HHHHHHHHHHC---S
T ss_pred             CcchHhhHHHHHHHcCCeEEEeCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCC-----h-hHHHHHHHhCC---C
Confidence            444444567788999999876642 111   134577888888875  8899998763     2 22222211111   2


Q ss_pred             ccchhhhcccCCCccccccCCHHH-HHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.|       .+.+.||=+.+ ++.+.|+.| +++|++|++||-++-|.+.++..+...|++|+++.-.        
T Consensus       127 PVINag-------~~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  198 (323)
T 3gd5_A          127 PVINAL-------TDHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAV  198 (323)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHH
T ss_pred             CEEeCC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHH
Confidence            345643       24567997777 455555555 7999999999998889999999999999999998532        


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc----CCC-----------Cc-ccCCCc---CCCcEEEEee
Q 017184          276 -----------------TKNPEEITRQADIIISAV----GQP-----------NM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv----G~p-----------~~-I~~~~v---k~gavVIDvg  314 (375)
                                       +.|+++.++.||+|.+-.    |..           .+ |+.+.+   ++++++.=++
T Consensus       199 ~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          199 SARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             HHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             HHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence                             246778899999998664    321           12 444433   6778877766

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.51  E-value=0.0049  Score=55.98  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999999999999999999999999987764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.50  E-value=0.0045  Score=53.45  Aligned_cols=56  Identities=13%  Similarity=0.248  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      .+|+++|+|+++-+|+.++..|+++|++|+++.|+..                     ++.+.++.+|+||.++|..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            3589999999888899999999999999999876521                     2345677889999888754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.50  E-value=0.0059  Score=57.42  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=36.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      +.+|+||.++|-|++.-+|+.++..|+++||+|.++.++.+
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~   42 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAP   42 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc
Confidence            46899999999999888899999999999999999987643

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.50  E-value=0.16  Score=49.35  Aligned_cols=159  Identities=12%  Similarity=0.087  Sum_probs=107.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC----CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED----TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSI  191 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~----vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i  191 (375)
                      .++.|-. +  .|..---+=..++.++|.++.++.-...    ..-|-+.+.++-|+.-  +|+|.+--|-..  ..+.+
T Consensus        43 ~la~lF~-e--~STRTR~SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~l  115 (310)
T 3csu_A           43 VIASCFF-E--ASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQEG--AARLA  115 (310)
T ss_dssp             EEEEEES-S--CCHHHHHHHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTT--CSEEEEEESSTT--HHHHH
T ss_pred             EEEEEec-C--CCccHHHHHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHh--CCEEEEECCChh--HHHHH
Confidence            4444444 2  3554444667889999999887754432    1346788899998875  789999877432  33333


Q ss_pred             HhhCCcccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhC-CC
Q 017184          192 LNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQRE-DA  267 (375)
Q Consensus       192 ~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~-gA  267 (375)
                      .+..      ..+-.+|.|-   |   +.+.||-+.+= +.+.|+. ..++|++++++|-+  +-|.+.++..|... |+
T Consensus       116 a~~~------~~vPVINag~---G---~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~  182 (310)
T 3csu_A          116 TEFS------GNVPVLNAGD---G---SNQHPTQTLLDLFTIQETQ-GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGN  182 (310)
T ss_dssp             HHHC------TTCCEEEEEE---T---TSCCHHHHHHHHHHHHHHH-SCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSC
T ss_pred             HHhc------CCCCEEcCcc---C---CCCCchHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCC
Confidence            3322      1233456421   1   45679988874 4555554 47999999999986  34699999999999 99


Q ss_pred             eEEEEcCC---------------------CCCHHhhccCCcEEEEccC
Q 017184          268 TVSIVHSR---------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       268 tVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      +|+++.-.                     +.++++.++.||+|.+-.-
T Consensus       183 ~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          183 RFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             EEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             EEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            99998522                     3577889999999997653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.49  E-value=0.0021  Score=65.14  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------CHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ++|+|+|+|+|++ |+.++..|++.|++|++++|+..                       ++.+.++++|+||+++|...
T Consensus         2 ~~k~VlViGaG~i-G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence            5789999998775 99999999999999999876410                       23355678999999998532


Q ss_pred             -c-ccCCCcCCCcEEEEeee
Q 017184          298 -M-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       298 -~-I~~~~vk~gavVIDvgi  315 (375)
                       . +..+.++.|..++|..+
T Consensus        81 ~~~i~~a~l~~g~~vvd~~~  100 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVTTSY  100 (450)
T ss_dssp             HHHHHHHHHHHTCEEEESSC
T ss_pred             chHHHHHHHhCCCeEEEeec
Confidence             1 34456677788888753

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.49  E-value=0.0033  Score=63.84  Aligned_cols=73  Identities=23%  Similarity=0.291  Sum_probs=57.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~ADI  288 (375)
                      -++.|||.|. ||.|+|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         9 ~~~~vIGlG~-vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGY-VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             eEEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            4799999988 59999999999999999997542                                  245567889999


Q ss_pred             EEEccCCCC----------ccc------CCCcCCCcEEEEeeec
Q 017184          289 IISAVGQPN----------MVR------GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       289 VIsAvG~p~----------~I~------~~~vk~gavVIDvgin  316 (375)
                      ||.++|.|.          .+.      ...+++|++|||...-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999998773          121      1357889999987643

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.0047  Score=56.56  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999988889999999999999999987764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.49  E-value=0.0023  Score=60.41  Aligned_cols=70  Identities=14%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC---eEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCcccC--
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA---TVSIVHSRT---------------KNPEEITRQADIIISAVGQPNMVRG--  301 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA---tVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~I~~--  301 (375)
                      .+++.|||.|.+ |..++..|.+.|.   +|++++++.               .+..+.++++|+||.++. |..+..  
T Consensus         3 ~~~I~iIG~G~m-G~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl   80 (280)
T 3tri_A            3 TSNITFIGGGNM-ARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC   80 (280)
T ss_dssp             CSCEEEESCSHH-HHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH
T ss_pred             CCEEEEEcccHH-HHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH
Confidence            478999999886 9999999999997   899998763               356677899999999994 443211  


Q ss_pred             ----CC-cCCCcEEEEe
Q 017184          302 ----SW-IKPGAVIIDV  313 (375)
Q Consensus       302 ----~~-vk~gavVIDv  313 (375)
                          .. ++++.+||.+
T Consensus        81 ~~l~~~~l~~~~iiiS~   97 (280)
T 3tri_A           81 EELKDILSETKILVISL   97 (280)
T ss_dssp             HHHHHHHHTTTCEEEEC
T ss_pred             HHHHhhccCCCeEEEEe
Confidence                23 5677677654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.48  E-value=0.0026  Score=64.70  Aligned_cols=73  Identities=25%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------CCHHhhccC---CcEEEEccCCCCc---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------KNPEEITRQ---ADIIISAVGQPNM---  298 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------~~L~~~l~~---ADIVIsAvG~p~~---  298 (375)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.                  .++++.++.   +|+||.+++.+..   
T Consensus         6 ~~IgvIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            6 ANFGVVGMAVM-GKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CcEEEEeeHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            57999999885 9999999999999999998752                  245566555   9999999987532   


Q ss_pred             -cc--CCCcCCCcEEEEeeec
Q 017184          299 -VR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       299 -I~--~~~vk~gavVIDvgin  316 (375)
                       +.  ...+++|.+|||++..
T Consensus        85 vl~~l~~~l~~g~iiId~s~~  105 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGNT  105 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhhCCCCCEEEECCCC
Confidence             22  2467889999998743

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.48  E-value=0.0092  Score=55.56  Aligned_cols=80  Identities=23%  Similarity=0.287  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEcC----------------CcccHHHHHHHHhhCCCeEEEEcCCCC-------------CH-------Hhh
Q 017184          239 DIKGKRAVVIGR----------------SNIVGMPAALLLQREDATVSIVHSRTK-------------NP-------EEI  282 (375)
Q Consensus       239 ~l~GK~vvVIGr----------------s~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L-------~~~  282 (375)
                      +++||+|+|-|.                |+-+|.++|..|..+||.|+++++.+.             +.       .+.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~   84 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   84 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHh
Confidence            578999999999                354699999999999999999876421             11       123


Q ss_pred             ccCCcEEEEccCCCCc----ccCCCcCC---C--cEEEEeeecCC
Q 017184          283 TRQADIIISAVGQPNM----VRGSWIKP---G--AVIIDVGINPV  318 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~----I~~~~vk~---g--avVIDvgin~~  318 (375)
                      ....|++|+++|...+    ...+-+|+   +  ...+.+--||+
T Consensus        85 ~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~pd  129 (226)
T 1u7z_A           85 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPD  129 (226)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCC
T ss_pred             cCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecHH
Confidence            4678999999996543    33455666   2  36677766653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.46  E-value=0.012  Score=59.68  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=61.7

Q ss_pred             HHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC--------------CCCHHhhccCCc
Q 017184          231 ELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITRQAD  287 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~--------------t~~L~~~l~~AD  287 (375)
                      ++.+..+.+++||+|.|+|-+         +.-...++..|.++|++|.+..-.              ..++++.++.||
T Consensus       311 ~i~~~l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad  390 (446)
T 4a7p_A          311 KVIKAMGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGAD  390 (446)
T ss_dssp             HHHHHTTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBS
T ss_pred             HHHHHhcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCC
Confidence            344455778999999999975         233678999999999999998532              235678899999


Q ss_pred             EEEEccCCCCcccC--CCcCC---CcEEEEe
Q 017184          288 IIISAVGQPNMVRG--SWIKP---GAVIIDV  313 (375)
Q Consensus       288 IVIsAvG~p~~I~~--~~vk~---gavVIDv  313 (375)
                      .||.++..+.|-..  +.+++   +.+|+|.
T Consensus       391 ~vvi~t~~~~f~~~d~~~~~~~~~~~~i~D~  421 (446)
T 4a7p_A          391 ALVIVTEWDAFRALDLTRIKNSLKSPVLVDL  421 (446)
T ss_dssp             EEEECSCCTTTTSCCHHHHHTTBSSCBEECS
T ss_pred             EEEEeeCCHHhhcCCHHHHHHhcCCCEEEEC
Confidence            99999999887433  33322   4578884

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.46  E-value=0.0052  Score=57.60  Aligned_cols=56  Identities=20%  Similarity=0.277  Sum_probs=45.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC------------------------HHhhccCCcEEEEccCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------------------------PEEITRQADIIISAVGQ  295 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~------------------------L~~~l~~ADIVIsAvG~  295 (375)
                      ++||.++|-|++.=+|+.++..|+++||+|.++.++.+.                        +-+...+-||+|+.+|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            589999999998888999999999999999999876321                        12345567888888774

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.44  E-value=0.0039  Score=54.58  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH------------------hhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE------------------EITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~------------------~~l~~ADIVIsAvG~p  296 (375)
                      ++|+|+|+++-+|+.++..|+++|++|+++.|+...+.                  +.+...|+||.++|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            36999999888899999999999999999987642211                  4567899999999864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.44  E-value=0.0025  Score=62.18  Aligned_cols=112  Identities=19%  Similarity=0.276  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCC-Cc-
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEEITRQADIIISAVGQP-NM-  298 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p-~~-  298 (375)
                      +.+||+|+|+|. ||++++..|.+ +..|+++.+..                    ..|.+.++++|+||+++|.- +. 
T Consensus        15 ~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~   92 (365)
T 3abi_A           15 RHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFK   92 (365)
T ss_dssp             -CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHH
T ss_pred             CccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccch
Confidence            344799999976 59999998865 56888875531                    23567889999999999742 11 


Q ss_pred             ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCC-CCccHHHHHHHHHHHHHH
Q 017184          299 VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVP-GGVGPMTIAMLLSNTLTS  367 (375)
Q Consensus       299 I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVP-GGVGp~T~amLl~N~v~a  367 (375)
                      +-...++.|.-++|+.+.+.+.          -..  ++.++.++.. =+| =|+-|=-..|+...+++.
T Consensus        93 v~~~~~~~g~~yvD~s~~~~~~----------~~l--~~~a~~~g~~-~i~~~G~~PG~~~~~a~~~~~~  149 (365)
T 3abi_A           93 SIKAAIKSKVDMVDVSFMPENP----------LEL--RDEAEKAQVT-IVFDAGFAPGLSNILMGRIFQE  149 (365)
T ss_dssp             HHHHHHHHTCEEEECCCCSSCG----------GGG--HHHHHHTTCE-EECCCBTTTBHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcceEeeeccchhh----------hhh--hhhhccCCce-eeecCCCCCchHHHHHHHHHHh
Confidence            3445667788999988654221          122  2334445431 122 255566666777665543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.44  E-value=0.0052  Score=59.44  Aligned_cols=94  Identities=20%  Similarity=0.310  Sum_probs=67.3

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------HH
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------PE  280 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L~  280 (375)
                      +||.....+..|++.++...|.+|+|+|.|. ||..+++++...|++|+++.+....                     +.
T Consensus       161 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  239 (357)
T 2cf5_A          161 LLCAGVTVYSPLSHFGLKQPGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMS  239 (357)
T ss_dssp             GGTHHHHHHHHHHHTSTTSTTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHH
Confidence            4555555566777766654799999999866 6999999998899998877654321                     11


Q ss_pred             hhccCCcEEEEccCCCCcc--cCCCcCCCcEEEEeeec
Q 017184          281 EITRQADIIISAVGQPNMV--RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~l~~ADIVIsAvG~p~~I--~~~~vk~gavVIDvgin  316 (375)
                      +....+|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       240 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          240 ELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             HSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCC
T ss_pred             HhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCC
Confidence            2233579999999976543  23678888888888864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.43  E-value=0.004  Score=58.80  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------CHHhhccCCcEEEEccCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      -+.++|+|+|.|+++-+|+.++..|+++|++|+++.+...               .+.+.++..|+||..++..
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            4578999999999999999999999999999999877531               2456778999999888754

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.43  E-value=0.0059  Score=55.89  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=45.3

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------CCHHh---hccCCcEEEEccCC
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------KNPEE---ITRQADIIISAVGQ  295 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------~~L~~---~l~~ADIVIsAvG~  295 (375)
                      ...+++||+++|.|+++-+|+.++..|+++|++|+++.|+.                .++++   .+...|+||+.+|.
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            34578999999999998899999999999999999987752                12222   22367888888774

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.41  E-value=0.006  Score=56.56  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++..
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4689999999999888899999999999999999987654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.0028  Score=52.70  Aligned_cols=54  Identities=13%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------C---HHh-hccCCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------N---PEE-ITRQADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~---L~~-~l~~ADIVIsAvG~  295 (375)
                      .+++++|+|.|. +|+.++..|.++|..|+++.++..                  +   +++ .+.++|+||.++|.
T Consensus         5 ~~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            467899999988 599999999999999999876521                  1   111 14678999998884

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.39  E-value=0.0075  Score=57.93  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHh---------------hccCC
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEE---------------ITRQA  286 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~---------------~l~~A  286 (375)
                      +||.....+..|++.++ -.|.+|+|+|+|. ||..+++++...|++|+.+.+....++.               ..+.+
T Consensus       158 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  235 (348)
T 3two_A          158 LLCAGITTYSPLKFSKV-TKGTKVGVAGFGG-LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL  235 (348)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEESCSH-HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCE
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCC
Confidence            46655556667766543 3699999999965 6999999999999999887665433321               11257


Q ss_pred             cEEEEccCCCCcc--cCCCcCCCcEEEEeeecC
Q 017184          287 DIIISAVGQPNMV--RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       287 DIVIsAvG~p~~I--~~~~vk~gavVIDvgin~  317 (375)
                      |+||.++|.+..+  --+.++++-.++.+|...
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            8999999987543  236788888889998654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.39  E-value=0.0032  Score=59.29  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+||.++|-|++.=+|+.+|..|+++||+|.+++++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~   40 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL   40 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            7899999999998888999999999999999999876

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.38  E-value=0.0037  Score=63.42  Aligned_cols=79  Identities=24%  Similarity=0.323  Sum_probs=56.1

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------------------------CCCHHhhc
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------------------------TKNPEEIT  283 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------------------------t~~L~~~l  283 (375)
                      .+-...-.+|.|||.|. ||.++|..|++ |.+|+++++.                                |.++.+.+
T Consensus        30 ~~r~~~~mkIaVIGlG~-mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           30 MGRGSEFMKITISGTGY-VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             -----CCCEEEEECCSH-HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             cccccCCCEEEEECcCH-HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            33444556999999988 49999999987 9999998754                                12456778


Q ss_pred             cCCcEEEEccCCCC----------ccc------CCCcCCCcEEEEeeecC
Q 017184          284 RQADIIISAVGQPN----------MVR------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       284 ~~ADIVIsAvG~p~----------~I~------~~~vk~gavVIDvgin~  317 (375)
                      ++||+||.+++.|.          .+.      .. +++|++|||...-+
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~  156 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP  156 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            89999999998761          110      12 68899999876443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.38  E-value=0.0017  Score=60.69  Aligned_cols=72  Identities=24%  Similarity=0.323  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCC---ccc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRT----------------KNPEEITRQADIIISAVGQPN---MVR  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~---~I~  300 (375)
                      -+++.|||.|.+ |.+++..|.+.  +.+|++++++.                .++.+.++++|+||.+++...   ++.
T Consensus         6 ~~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   84 (290)
T 3b1f_A            6 EKTIYIAGLGLI-GASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIK   84 (290)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHH
T ss_pred             cceEEEEeeCHH-HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHH
Confidence            368999999885 99999999887  57899987642                245566788999999998532   222


Q ss_pred             --CCC-cCCCcEEEEee
Q 017184          301 --GSW-IKPGAVIIDVG  314 (375)
Q Consensus       301 --~~~-vk~gavVIDvg  314 (375)
                        ..+ ++++.+|+|++
T Consensus        85 ~l~~~~l~~~~ivi~~~  101 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAG  101 (290)
T ss_dssp             HHHTSCCCTTCEEECCC
T ss_pred             HHHhcCCCCCCEEEECC
Confidence              245 78899999975

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.38  E-value=0.0035  Score=58.07  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcCC---cccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRS---NIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs---~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+||.++|-|++   ++ |+.+|..|+++||+|.++.++
T Consensus         2 ~~l~gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECC
Confidence            47899999999975   55 999999999999999999876

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.33  E-value=0.0075  Score=56.92  Aligned_cols=59  Identities=7%  Similarity=0.055  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------C------HHhhcc--CCcEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------N------PEEITR--QADIIISA  292 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------~------L~~~l~--~ADIVIsA  292 (375)
                      .+++||+|+|.|+++-+|+.++..|+++|++|+++.|...                 |      +.+.++  ..|+||.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4678999999999888999999999999999999877321                 1      234556  88999988


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      +|..
T Consensus        96 A~~~   99 (330)
T 2pzm_A           96 AAAY   99 (330)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            8853

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.32  E-value=0.013  Score=60.18  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhC-CC-eEEEEcCCCC----C---H--------------------------------H
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRE-DA-TVSIVHSRTK----N---P--------------------------------E  280 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~-gA-tVtv~hs~t~----~---L--------------------------------~  280 (375)
                      -++|.|||.|.+ |.|+|..|++. |. +|++++++..    .   +                                .
T Consensus        18 ~mkIaVIGlG~m-G~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~   96 (478)
T 3g79_A           18 IKKIGVLGMGYV-GIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF   96 (478)
T ss_dssp             CCEEEEECCSTT-HHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCG
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcH
Confidence            368999999885 99999999999 99 9999976543    0   0                                2


Q ss_pred             hhccCCcEEEEccCCCCccc-----------------CCCcCCCcEEEEeeecCC
Q 017184          281 EITRQADIIISAVGQPNMVR-----------------GSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       281 ~~l~~ADIVIsAvG~p~~I~-----------------~~~vk~gavVIDvgin~~  318 (375)
                      +.+++||+||.++|.|.-..                 ...+++|++|||...-+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p  151 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP  151 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence            34678999999999774211                 024688999999875543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.32  E-value=0.0052  Score=55.36  Aligned_cols=37  Identities=35%  Similarity=0.602  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999999989999999999999999998876

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.31  E-value=0.0025  Score=55.42  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCC------------------CC---HHhh--ccCCcEEEEc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRT------------------KN---PEEI--TRQADIIISA  292 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t------------------~~---L~~~--l~~ADIVIsA  292 (375)
                      ..++.+++++|+|.|.+ |+.++..|.+. |++|+++.++.                  .+   +.+.  +.++|+||.+
T Consensus        34 ~~~~~~~~v~IiG~G~~-G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           34 LINPGHAQVLILGMGRI-GTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             CBCCTTCSEEEECCSHH-HHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CcCCCCCcEEEECCCHH-HHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            34677889999999875 99999999998 99999987642                  11   2333  6788999998


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      ++..
T Consensus       113 ~~~~  116 (183)
T 3c85_A          113 MPHH  116 (183)
T ss_dssp             CSSH
T ss_pred             CCCh
Confidence            8854

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.30  E-value=0.005  Score=61.71  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCcEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQADII  289 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~ADIV  289 (375)
                      ++.|||.|.+ |.+++..|++.|.+|++++++.                                  .++.+.+++||+|
T Consensus         2 kI~VIG~G~v-G~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYV-GAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            6899999885 9999999999999999987531                                  1334567889999


Q ss_pred             EEccCCCCc---------cc------CCCcCC---CcEEEEeeecC
Q 017184          290 ISAVGQPNM---------VR------GSWIKP---GAVIIDVGINP  317 (375)
Q Consensus       290 IsAvG~p~~---------I~------~~~vk~---gavVIDvgin~  317 (375)
                      |.+++.|.-         +.      ...+++   +.+||+....+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~  126 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL  126 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence            999997752         11      124577   89999875443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.30  E-value=0.003  Score=62.13  Aligned_cols=72  Identities=15%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------CCCHHhhccCCcEEEEcc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      -++|.|||.|.. |.+++..|.+.|.+|+++.++                            +.++.+.+++||+||.++
T Consensus        29 ~mkI~VIGaG~m-G~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSW-GTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             CCeEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            468999999885 999999999999999998764                            135667889999999999


Q ss_pred             CCCCc---cc--CCCcCCCcEEEEee
Q 017184          294 GQPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       294 G~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      +...+   +.  ..+++++++||++.
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            85321   11  24678899999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.30  E-value=0.0019  Score=62.01  Aligned_cols=94  Identities=18%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------CHHh--
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------NPEE--  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------~L~~--  281 (375)
                      ||.+..+...+.+..---.|++|+|+|+|+.+|..+++++...||+|+.+.++..                   ++.+  
T Consensus       126 ~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~  205 (340)
T 3gms_A          126 YINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETV  205 (340)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             cchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHH
Confidence            5555666555544333346999999999977899999999999999988765432                   2222  


Q ss_pred             --hc--cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          282 --IT--RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 --~l--~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                        .+  +..|+||.++|.+... ..+.++++-.++.+|..
T Consensus       206 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          206 MELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeec
Confidence              22  2589999999976532 12578888899999864

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.27  E-value=0.17  Score=48.97  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      .++.|-. +  .|..---+=..++.++|.++.++.-.+..   .-|-+.+.++-|+.-  +|+|.+--|-..  ..+.+.
T Consensus        40 ~~~~lF~-e--~STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la  112 (299)
T 1pg5_A           40 TISIAFF-E--PSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY--SDGIVMRHKYDG--ASRFAS  112 (299)
T ss_dssp             EEEEEES-S--CCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH--CSEEEEEESSBT--HHHHHH
T ss_pred             EEEEEec-C--CCcchHHhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHh--CCEEEEeCCChh--HHHHHH
Confidence            3444444 2  35444446678899999998877533211   113455565555553  578998876432  333333


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhC-CCe
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQRE-DAT  268 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~-gAt  268 (375)
                      +..       .+-.+|.|      ..+.+.||-+.+= +.+.|+. .+++|++++++|-+  +-|.+.++..|... |++
T Consensus       113 ~~~-------~vPVINaG------~g~~~HPtQ~LaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~  178 (299)
T 1pg5_A          113 EIS-------DIPVINAG------DGKHEHPTQAVIDIYTINKHF-NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKL  178 (299)
T ss_dssp             HHC-------SSCEEEEE------ETTTBCHHHHHHHHHHHHHHH-SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSE
T ss_pred             HhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCE
Confidence            222       13345542      2345779988884 4555554 48999999999985  34799999999999 999


Q ss_pred             EEEEcCC------------------CCCHHhhccCCcEEEEccC
Q 017184          269 VSIVHSR------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       269 Vtv~hs~------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      |+++.-.                  +.++++.++.||+|.+-.-
T Consensus       179 v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  222 (299)
T 1pg5_A          179 VYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRI  222 (299)
T ss_dssp             EEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECC
T ss_pred             EEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCc
Confidence            9998522                  2467889999999997654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.26  E-value=0.0062  Score=58.38  Aligned_cols=69  Identities=19%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      -++.|||.|.+ |.+++..|++.|.+|++++++.                         .+..+ ++.+|+||.++....
T Consensus        15 ~kI~iIG~G~m-G~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~~   92 (335)
T 1z82_A           15 MRFFVLGAGSW-GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQY   92 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGGG
T ss_pred             CcEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHHH
Confidence            47999999885 9999999999999999998752                         13345 678999999998533


Q ss_pred             c--ccCCCcC-CCcEEEEee
Q 017184          298 M--VRGSWIK-PGAVIIDVG  314 (375)
Q Consensus       298 ~--I~~~~vk-~gavVIDvg  314 (375)
                      +  +- +.++ ++.+||++.
T Consensus        93 ~~~v~-~~l~~~~~~vv~~~  111 (335)
T 1z82_A           93 IREHL-LRLPVKPSMVLNLS  111 (335)
T ss_dssp             HHHHH-TTCSSCCSEEEECC
T ss_pred             HHHHH-HHhCcCCCEEEEEe
Confidence            2  11 1133 788999985

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.26  E-value=0.0034  Score=59.17  Aligned_cols=38  Identities=34%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+||.++|-|++.-+|+.++..|+++||+|.++.++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~   42 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR   42 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            48999999999999889999999999999999998775

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.24  E-value=0.0078  Score=56.87  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=53.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------------
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------------  277 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------------  277 (375)
                      .|.|+.-+..-+     .+.+|+|+|.|+++.+|+.++..|+++|++|+++.|...                        
T Consensus        10 ~~~~~~~~~~~~-----~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (351)
T 3ruf_A           10 YMSRYEEITQQL-----IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFI   84 (351)
T ss_dssp             CCHHHHHHHHHH-----HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEE
T ss_pred             HHHHHhhHHhhC-----CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEE
Confidence            355556555443     247899999999999999999999999999999877421                        


Q ss_pred             --------CHHhhccCCcEEEEccCCC
Q 017184          278 --------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       278 --------~L~~~l~~ADIVIsAvG~p  296 (375)
                              .+.+.++..|+||.++|..
T Consensus        85 ~~Dl~d~~~~~~~~~~~d~Vih~A~~~  111 (351)
T 3ruf_A           85 EGDIRDLTTCEQVMKGVDHVLHQAALG  111 (351)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             EccCCCHHHHHHHhcCCCEEEECCccC
Confidence                    1345677899999888853

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.24  E-value=0.0043  Score=55.07  Aligned_cols=56  Identities=11%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHh-hCCCeEEEEcCCCC------------------------CHHhhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQ-REDATVSIVHSRTK------------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~-~~gAtVtv~hs~t~------------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      .|+|+|.|+++-+|+.++..|+ ++|++|+++.|+..                        ++.+.++.+|+||+++|..
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            3679999998888999999999 89999999876532                        1345678899999999864


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      +
T Consensus        85 n   85 (221)
T 3r6d_A           85 G   85 (221)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.24  E-value=0.0041  Score=57.79  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------CH------H-------hhccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------NP------E-------EITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~L------~-------~~l~~ADIVIsAvG~  295 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++..          |+      .       +....-|+||+.+|.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            579999999999988899999999999999999877632          11      1       112368999999885


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      .
T Consensus       105 ~  105 (266)
T 3uxy_A          105 I  105 (266)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.23  E-value=0.003  Score=58.82  Aligned_cols=71  Identities=18%  Similarity=0.375  Sum_probs=52.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------------CHHhhcc---CCcEEEEcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------------NPEEITR---QADIIISAV  293 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------------~L~~~l~---~ADIVIsAv  293 (375)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++++..                          +..+...   ++|+||.++
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAM-GSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            47999999885 99999999999999999987521                          1112233   899999999


Q ss_pred             CCCCc---cc--CCCcCCCcEEEEee
Q 017184          294 GQPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       294 G~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      +....   +.  ...++++.+|||+.
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            85321   11  13567889999984

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.20  E-value=0.0066  Score=57.88  Aligned_cols=70  Identities=24%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------------------CCHHhhccCCcEEEEcc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------------------~~L~~~l~~ADIVIsAv  293 (375)
                      +++.|||.|.+ |..++..|.+.|.+|+++.++.                             .++.+.++++|+||.++
T Consensus         5 mki~iiG~G~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            58999999875 9999999999999999987641                             23445578899999999


Q ss_pred             CCCCc---cc--CCCcCCCcEEEEe
Q 017184          294 GQPNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       294 G~p~~---I~--~~~vk~gavVIDv  313 (375)
                      +....   +.  ...++++.+||++
T Consensus        84 ~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            86542   21  1346778888877

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.20  E-value=0.0049  Score=56.52  Aligned_cols=38  Identities=37%  Similarity=0.577  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD   45 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.19  E-value=0.0049  Score=54.59  Aligned_cols=54  Identities=28%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      |+|+|.|+++-+|+.++..|+++|++|+++.|+..                    ++.+.++..|+||.++|..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            78999999999999999999999999999977521                    2446778899999988753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.18  E-value=0.0013  Score=64.69  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhcc----CCcEEEEccCCCC---ccc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITR----QADIIISAVGQPN---MVR  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~----~ADIVIsAvG~p~---~I~  300 (375)
                      -++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++    ++|+||.+++...   ++.
T Consensus         8 ~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLI-GGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEeecHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHH
Confidence            367999999886 9999999999999999998763              34555554    4699999998422   111


Q ss_pred             C-CCcCCCcEEEEeeec
Q 017184          301 G-SWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 ~-~~vk~gavVIDvgin  316 (375)
                      . ...++|++|+|++..
T Consensus        87 ~l~~~~~~~iv~Dv~Sv  103 (341)
T 3ktd_A           87 AVHTHAPNNGFTDVVSV  103 (341)
T ss_dssp             HHHHHCTTCCEEECCSC
T ss_pred             HHHccCCCCEEEEcCCC
Confidence            0 013789999999843

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.18  E-value=0.0058  Score=54.41  Aligned_cols=57  Identities=11%  Similarity=0.017  Sum_probs=46.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCC--------------------CCHHhhccCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRT--------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t--------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      ..+|+|+|.|+++-+|+.++..|+++  |++|+++.|+.                    .++.+.++..|+||.++|..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   80 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV   80 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence            46899999999998999999999999  89999887642                    12446677899999888753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.17  E-value=0.0043  Score=59.37  Aligned_cols=36  Identities=22%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ++++||+|+|||.|.+ |...+..|+..||.|+|+..
T Consensus         9 ~~l~~k~VLVVGgG~v-a~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEV-GLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             ECCTTCEEEEEEESHH-HHHHHHHHGGGTCEEEEEEE
T ss_pred             EEcCCCEEEEECCcHH-HHHHHHHHHhCCCEEEEEcC
Confidence            5789999999999985 99999999999999999753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.16  E-value=0.0053  Score=55.72  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+|+|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            56899999999998889999999999999999998775

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.16  E-value=0.0069  Score=56.55  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            358999999999988889999999999999999987764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.15  E-value=0.0052  Score=56.34  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998775

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.0054  Score=55.56  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEE-EcCCCC---------------CHHhhccCCcEEEEccCCCCc------c
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSI-VHSRTK---------------NPEEITRQADIIISAVGQPNM------V  299 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv-~hs~t~---------------~L~~~l~~ADIVIsAvG~p~~------I  299 (375)
                      -+++.|||.|.+ |.+++..|.+.|.+|++ ++++..               +..+.++++|+||.+++....      +
T Consensus        23 mmkI~IIG~G~m-G~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l  101 (220)
T 4huj_A           23 MTTYAIIGAGAI-GSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQV  101 (220)
T ss_dssp             SCCEEEEECHHH-HHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHh
Confidence            368999999885 99999999999999998 666532               223456889999999973221      2


Q ss_pred             cCCCcCCCcEEEEee
Q 017184          300 RGSWIKPGAVIIDVG  314 (375)
Q Consensus       300 ~~~~vk~gavVIDvg  314 (375)
                      .+  + ++.+|||+.
T Consensus       102 ~~--~-~~~ivi~~~  113 (220)
T 4huj_A          102 SD--W-GGQIVVDAS  113 (220)
T ss_dssp             SC--C-TTCEEEECC
T ss_pred             hc--c-CCCEEEEcC
Confidence            22  3 578999987

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.13  E-value=0.0057  Score=54.89  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999998765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.13  E-value=0.0062  Score=56.12  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------------HHhhccCCcEEEEccCCCCc---c
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------------PEEITRQADIIISAVGQPNM---V  299 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------------L~~~l~~ADIVIsAvG~p~~---I  299 (375)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++...                     ..+.++++|+||.+++...+   +
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            6999999885 999999999999999998765321                     12345689999999986542   1


Q ss_pred             c--CCCcCCCcEEEEee
Q 017184          300 R--GSWIKPGAVIIDVG  314 (375)
Q Consensus       300 ~--~~~vk~gavVIDvg  314 (375)
                      .  ...++++.+|||+.
T Consensus        81 ~~l~~~l~~~~~vv~~~   97 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIH   97 (291)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhCCCCCEEEEec
Confidence            1  13567788899973

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.13  E-value=0.083  Score=51.29  Aligned_cols=178  Identities=15%  Similarity=0.079  Sum_probs=116.3

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCH----HHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSE----QEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSI  191 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~----~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i  191 (375)
                      .++.|-. +  .|..---+=..++.++|.++.++.-. +.++    |-+.+.++-|+.-  +|+|.+--|-..  ..+.+
T Consensus        46 ~l~~lF~-e--~STRTR~SFe~A~~~LGg~~i~l~~~-~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~l  117 (308)
T 1ml4_A           46 ILATLFF-E--PSTRTRLSFESAMHRLGGAVIGFAEA-STSSVKKGESLRDTIKTVEQY--CDVIVIRHPKEG--AARLA  117 (308)
T ss_dssp             EEEEEES-S--CCSHHHHHHHHHHHHTTCEEEEESCG-GGSGGGGTCCHHHHHHHHTTT--CSEEEEEESSTT--HHHHH
T ss_pred             EEEEEec-C--CCchHHHHHHHHHHHhCCeEEEeCCC-ccccccCCCCHHHHHHHHHHh--CcEEEEecCChh--HHHHH
Confidence            4444443 2  24443445578899999998777532 2122    5678888888775  789999876432  33333


Q ss_pred             HhhCCcccccCccccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhCCCeE
Q 017184          192 LNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQREDATV  269 (375)
Q Consensus       192 ~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtV  269 (375)
                      .+..       .+-.+|.|-      .+.+.||-+.+=+--++++..+++|+++++||-+  +-|.+.++..|...|++|
T Consensus       118 a~~~-------~vPVINag~------g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v  184 (308)
T 1ml4_A          118 AEVA-------EVPVINAGD------GSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVEL  184 (308)
T ss_dssp             HHTC-------SSCEEEEEE------TTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEE
T ss_pred             HHhC-------CCCEEeCcc------CCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEE
Confidence            3222       133455321      1456799888854444455558999999999986  246999999999999999


Q ss_pred             EEEcCC---------------------CCCHHhhccCCcEEEEccCC---------------CCcccCCCc---CCCcEE
Q 017184          270 SIVHSR---------------------TKNPEEITRQADIIISAVGQ---------------PNMVRGSWI---KPGAVI  310 (375)
Q Consensus       270 tv~hs~---------------------t~~L~~~l~~ADIVIsAvG~---------------p~~I~~~~v---k~gavV  310 (375)
                      +++.-.                     +.|+++.+++||+|.+-.-.               +.-|+.+.+   ++++++
T Consensus       185 ~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~  264 (308)
T 1ml4_A          185 YLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRI  264 (308)
T ss_dssp             EEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEE
T ss_pred             EEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEE
Confidence            998522                     24678899999999976531               222566655   567777


Q ss_pred             EEee
Q 017184          311 IDVG  314 (375)
Q Consensus       311 IDvg  314 (375)
                      .=++
T Consensus       265 mH~l  268 (308)
T 1ml4_A          265 MHPL  268 (308)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            6655

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.12  E-value=0.0053  Score=56.34  Aligned_cols=37  Identities=32%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.11  E-value=0.006  Score=55.87  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCC--------CCHHhhccCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRT--------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t--------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ..++.|||.|.+ |.+++..|.+.|    .+|++++++.        .+..+.++++|+||.+++.
T Consensus         4 ~m~i~iiG~G~m-G~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQM-GSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCH
Confidence            458999999885 999999999888    6899998763        3677788899999999984

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.11  E-value=0.01  Score=57.90  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC--------------------HHh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--------------------PEE  281 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~--------------------L~~  281 (375)
                      +||....++..|++.++. .|.+|+|+|+|. ||..+++++...|++|+.+.+....                    +++
T Consensus       176 l~~~~~tA~~al~~~~~~-~g~~VlV~GaG~-vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  253 (369)
T 1uuf_A          176 LLCAGITTYSPLRHWQAG-PGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA  253 (369)
T ss_dssp             GGTHHHHHHHHHHHTTCC-TTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             hhhhHHHHHHHHHhcCCC-CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHH
Confidence            355445556666665432 589999999976 6999999998999998877643211                    122


Q ss_pred             hccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          282 ITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      ....+|+||.++|.+..+.  -+.++++-.++.+|..
T Consensus       254 ~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          254 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             hhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccC
Confidence            2346899999999875442  3678888888888854

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.10  E-value=0.0057  Score=55.00  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998775

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.10  E-value=0.0077  Score=56.24  Aligned_cols=39  Identities=33%  Similarity=0.552  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   66 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHS   66 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999988899999999999999999987753

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.10  E-value=0.0091  Score=54.44  Aligned_cols=58  Identities=22%  Similarity=0.354  Sum_probs=45.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------C------HHhhc-------cCCcEEEEcc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------N------PEEIT-------RQADIIISAV  293 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~------L~~~l-------~~ADIVIsAv  293 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+..           |      +++.+       ...|+||+.+
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~A   82 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAA   82 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            3578999999999988999999999999999999876521           1      12222       2679999988


Q ss_pred             CC
Q 017184          294 GQ  295 (375)
Q Consensus       294 G~  295 (375)
                      |.
T Consensus        83 g~   84 (250)
T 2fwm_X           83 GI   84 (250)
T ss_dssp             CC
T ss_pred             Cc
Confidence            85

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.10  E-value=0.0065  Score=56.44  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=46.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------C------HHhh-------ccCCcEEEEc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------N------PEEI-------TRQADIIISA  292 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~------L~~~-------l~~ADIVIsA  292 (375)
                      ..+++||+|+|.|+++-+|+.++..|+++|++|+++.++..           |      +++.       ...-|+||+.
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n   88 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNN   88 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            45789999999999988899999999999999999876531           1      1122       2367999999


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      +|..
T Consensus        89 Ag~~   92 (269)
T 3vtz_A           89 AGIE   92 (269)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            8853

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.09  E-value=0.0047  Score=58.79  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHh--
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEE--  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~--  281 (375)
                      ||.+..+...+.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.+  
T Consensus       122 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~  201 (325)
T 3jyn_A          122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRV  201 (325)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            455555566665543334699999999666679999999999999988876431                   23222  


Q ss_pred             --hc--cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecC
Q 017184          282 --IT--RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       282 --~l--~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~  317 (375)
                        .+  +..|+||.++|.+.+ ---++++++-.++.+|...
T Consensus       202 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          202 LELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             HHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCC
Confidence              22  358999999997433 1236788888999998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.09  E-value=0.014  Score=47.47  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=41.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------CH---H-hhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------NP---E-EITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------~L---~-~~l~~ADIVIsAvG~p  296 (375)
                      +++++|+|.|. +|+.++..|.+.|.+|+++.++..                   +.   . ..+.++|+||.+++.+
T Consensus         4 ~m~i~IiG~G~-iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGR-VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            57899999977 599999999999999999876421                   11   1 1256899999998864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.09  E-value=0.0056  Score=56.22  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=51.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-C-------------CCHHhhccCCcEEEEccCCCCc---cc--CCCc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR-T-------------KNPEEITRQADIIISAVGQPNM---VR--GSWI  304 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-t-------------~~L~~~l~~ADIVIsAvG~p~~---I~--~~~v  304 (375)
                      +|.|||.|.+ |.+++..|.+.|.+|+++++. .             .++.+.++++|+||.+++.+..   +.  .+.+
T Consensus         2 ~I~iIG~G~m-G~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHH-HHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            6899999886 999999999999999997662 1             2345667899999999986532   21  1234


Q ss_pred             CCCcEEEEee
Q 017184          305 KPGAVIIDVG  314 (375)
Q Consensus       305 k~gavVIDvg  314 (375)
                      ++  ++||+.
T Consensus        81 ~~--~vi~~s   88 (264)
T 1i36_A           81 RG--IYVDIN   88 (264)
T ss_dssp             CS--EEEECS
T ss_pred             Cc--EEEEcc
Confidence            55  888885

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.09  E-value=0.0051  Score=56.95  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            457899999999988889999999999999999998764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.08  E-value=0.01  Score=56.67  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhh--CCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQR--EDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~--~gAtVtv~hs  274 (375)
                      .+++||+|+|.|+++-+|+.++..|++  +|++|+++.+
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            367899999999999999999999999  8999999876

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.08  E-value=0.0061  Score=55.58  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=35.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   42 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRD   42 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            46899999999999888999999999999999999876

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.08  E-value=0.006  Score=54.05  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=43.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +|+|.|+++-+|+.++..|+++|++|+++.|+..                    ++.+.++..|+||..+|..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            6999999999999999999999999999877521                    2345677889999888854

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.07  E-value=0.008  Score=58.39  Aligned_cols=55  Identities=20%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      ..+|+|||+|. +|.+++..|+..|. +|+++.+.                          |.|+++.+++||+||.++|
T Consensus         9 ~~kI~VIGaG~-vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            35899999966 69999999999886 88887543                          2467678999999999998


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        88 ~p~   90 (331)
T 1pzg_A           88 LTK   90 (331)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.06  E-value=0.0053  Score=57.71  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHHhh
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------NPEEI  282 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~~~  282 (375)
                      ||....++..|.+.. --.|++|+|+|+++.+|..+++++...|++|+.+.++..                    ++.+.
T Consensus       108 ~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  186 (302)
T 1iz0_A          108 PVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKA  186 (302)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHH
T ss_pred             hhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHH
Confidence            333344455565555 346999999999666799999999999999988866421                    12222


Q ss_pred             ccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          283 TRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                      ++.+|+||. +|.+.+ ---+.++++..++.+|..
T Consensus       187 ~~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          187 WGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             TTSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             hcCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCC
Confidence            356899999 987432 123567888788888864

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.06  E-value=0.0038  Score=57.47  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------CHHhhccCCcEEEEccCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      ++|+|+|.|+++-+|+.++..|+++|++|+++.+...                  ++.+.+++.|+||..+|..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~   75 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS   75 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc
Confidence            5789999999888999999999999999998876531                  2446678899999988863

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.05  E-value=0.0051  Score=55.22  Aligned_cols=38  Identities=26%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   40 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS   40 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999999999999999999998765

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.05  E-value=0.0039  Score=60.81  Aligned_cols=71  Identities=14%  Similarity=0.150  Sum_probs=53.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-------CeEEEEcCCCC---------------------------------CHHhh
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSRTK---------------------------------NPEEI  282 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-------AtVtv~hs~t~---------------------------------~L~~~  282 (375)
                      ++|.|||.|.+ |.+++..|++.|       .+|++++++..                                 ++.+.
T Consensus        22 ~kI~iIGaG~m-G~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNW-ASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHH-HHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            47999999885 999999999988       89999977533                                 12345


Q ss_pred             ccCCcEEEEccCCCC---ccc--CC----CcCCCcEEEEee
Q 017184          283 TRQADIIISAVGQPN---MVR--GS----WIKPGAVIIDVG  314 (375)
Q Consensus       283 l~~ADIVIsAvG~p~---~I~--~~----~vk~gavVIDvg  314 (375)
                      +++||+||.+++...   .+.  ..    .++++.+||++.
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~  141 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLT  141 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECC
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeC
Confidence            678999999998432   111  13    678899999974

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.04  E-value=0.0061  Score=55.34  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   40 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLD   40 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.04  E-value=0.0052  Score=58.93  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-------CeEEEEcCCCC---------------------------------CHHh
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSRTK---------------------------------NPEE  281 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-------AtVtv~hs~t~---------------------------------~L~~  281 (375)
                      .++|.|||.|.+ |.+++..|++.|       .+|++++++..                                 ++.+
T Consensus         8 ~mkI~iIG~G~m-G~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            8 SKKVCIVGSGNW-GSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             CEEEEEECCSHH-HHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            368999999885 999999999988       88999876432                                 2334


Q ss_pred             hccCCcEEEEccCCCCc---cc--CCCcCCCcEEEEee
Q 017184          282 ITRQADIIISAVGQPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      .++++|+||.++....+   +.  ...++++.+|||+.
T Consensus        87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~  124 (354)
T 1x0v_A           87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLI  124 (354)
T ss_dssp             HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECC
T ss_pred             HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEEC
Confidence            56789999999975321   11  24578899999984

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.03  E-value=0.014  Score=54.30  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------CHHhhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +|+|+|.|+++.+|+.++..|+++|.+|+++.|...                 .+.+.++..|+||..++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence            479999999999999999999999999999887622                 1456778899999888753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.03  E-value=0.0065  Score=55.65  Aligned_cols=38  Identities=32%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999999889999999999999999998764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.03  E-value=0.0048  Score=62.83  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=54.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhc---cCCcEEEEccCCCCc--
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEIT---RQADIIISAVGQPNM--  298 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l---~~ADIVIsAvG~p~~--  298 (375)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++++.                   .++++.+   +++|+||.+++.+..  
T Consensus         3 m~IgvIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CeEEEEChHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            47999999885 9999999999999999998752                   2344554   489999999987632  


Q ss_pred             --cc--CCCcCCCcEEEEee
Q 017184          299 --VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       299 --I~--~~~vk~gavVIDvg  314 (375)
                        +.  ...+++|.+|||++
T Consensus        82 ~vl~~l~~~l~~g~iII~~s  101 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGG  101 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECS
T ss_pred             HHHHHHHhhcCCCCEEEECC
Confidence              21  13567899999986

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.03  E-value=0.006  Score=55.92  Aligned_cols=66  Identities=23%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCcccC--CCc-
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT---------------KNPEEITRQADIIISAVGQPNMVRG--SWI-  304 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~I~~--~~v-  304 (375)
                      ++.|||.|.+ |.+++..|.+.| .+|++++++.               .++.+.+ ++|+||.+++ |..+..  +.+ 
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~l~   78 (263)
T 1yqg_A            2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKNIR   78 (263)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTTCC
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHHhc
Confidence            6899999885 999999999999 8999998752               1333456 8999999998 432100  011 


Q ss_pred             -CCCcEEEEe
Q 017184          305 -KPGAVIIDV  313 (375)
Q Consensus       305 -k~gavVIDv  313 (375)
                       + +.+|||+
T Consensus        79 ~~-~~ivv~~   87 (263)
T 1yqg_A           79 TN-GALVLSV   87 (263)
T ss_dssp             CT-TCEEEEC
T ss_pred             cC-CCEEEEe
Confidence             3 7788887

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.02  E-value=0.0057  Score=56.65  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~   39 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   39 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998775

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.02  E-value=0.0054  Score=58.97  Aligned_cols=95  Identities=19%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------CHHh---
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------NPEE---  281 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~L~~---  281 (375)
                      ||....++..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++..                  ++.+   
T Consensus       141 ~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~  220 (342)
T 4eye_A          141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVR  220 (342)
T ss_dssp             TTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHH
Confidence            4444455566644433346999999999666799999999999999988766422                  2222   


Q ss_pred             -hc--cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecC
Q 017184          282 -IT--RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       282 -~l--~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~  317 (375)
                       .+  +..|+||.++|.+.+ ---++++++-.++.+|...
T Consensus       221 ~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  260 (342)
T 4eye_A          221 EATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAA  260 (342)
T ss_dssp             HHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC----
T ss_pred             HHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccC
Confidence             22  258999999998643 1235778888888998643

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.01  E-value=0.007  Score=55.89  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ...+++||+|+|.|+++-+|+.++..|+++|++|+++.++
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567899999999998889999999999999999998774

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.01  E-value=0.0075  Score=55.10  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.01  E-value=0.0026  Score=55.88  Aligned_cols=91  Identities=18%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH----hhc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE----EIT  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~----~~l  283 (375)
                      ..++..|.+..---.|++|+|+|+++-+|..++.++...|++|+.+.++.                   .+..    +.+
T Consensus        24 ~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           24 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT  103 (198)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHh
Confidence            33444554432223699999999755579999999999999988876541                   1111    122


Q ss_pred             --cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecC
Q 017184          284 --RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~  317 (375)
                        ...|+||.++|...+ ---+.++++..++.+|...
T Consensus       104 ~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A          104 DGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             TTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCC
Confidence              247999988874221 1124677888888888643

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.00  E-value=0.0067  Score=55.37  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999889999999999999999998775

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.00  E-value=0.0078  Score=55.73  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   54 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   54 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999998775

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.011  Score=56.79  Aligned_cols=94  Identities=14%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEE  281 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~  281 (375)
                      +||....++..|++.++ -.|++|+|+|+++.+|..++.++...|++|+++.++.                    .++.+
T Consensus       151 l~~~~~ta~~~l~~~~~-~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  229 (347)
T 2hcy_A          151 ILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVG  229 (347)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHH
T ss_pred             HhhhHHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHH
Confidence            45544445566665543 3699999999966679999999999999988876432                    12222


Q ss_pred             hcc-----CCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          282 ITR-----QADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l~-----~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .++     ..|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       230 ~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          230 AVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             HHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            222     4799999999754332  3567888788888864

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.99  E-value=0.0067  Score=55.29  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   38 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999889999999999999999998775

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.99  E-value=0.0075  Score=61.12  Aligned_cols=59  Identities=14%  Similarity=0.228  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-CCH-----------------HhhccCCcEEEEccCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNP-----------------EEITRQADIIISAVGQPN  297 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~~L-----------------~~~l~~ADIVIsAvG~p~  297 (375)
                      ++++||+|+|||.|.+ |...+.+|++.||.|+++.... .++                 .+.+..+|+||.++|.+.
T Consensus         8 ~~l~~~~vlVvGgG~v-a~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~   84 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (457)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH
Confidence            5789999999999985 9999999999999999987532 111                 234668999999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.99  E-value=0.0056  Score=56.49  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS   43 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998889999999999999999998765

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.98  E-value=0.0057  Score=55.97  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999998765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.97  E-value=0.02  Score=55.25  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------CHHh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------NPEE  281 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~L~~  281 (375)
                      +||....++..|++.++ -.|++|+|+|+|. ||..+++++...|++|+.+.+...                    ++.+
T Consensus       161 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  238 (360)
T 1piw_A          161 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE  238 (360)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             hhhhHHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHH
Confidence            45555555666666443 3599999999955 699999999889999888765432                    2222


Q ss_pred             hc-cCCcEEEEccCC--CCccc--CCCcCCCcEEEEeeec
Q 017184          282 IT-RQADIIISAVGQ--PNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l-~~ADIVIsAvG~--p~~I~--~~~vk~gavVIDvgin  316 (375)
                      .+ ..+|+||.++|.  +..+.  -+.++++..++.+|..
T Consensus       239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          239 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            22 368999999998  55543  3567888888888854

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.97  E-value=0.0078  Score=55.63  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------C------HHhhc-------cCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------N------PEEIT-------RQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~------L~~~l-------~~ADIVIsAvG~  295 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++..          |      +++.+       ...|+||+.+|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            478999999999998999999999999999999876521          1      12222       268999999885

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.96  E-value=0.017  Score=56.04  Aligned_cols=93  Identities=25%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             cCCHHHHHHHHHHhCC----CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC------------------CCCHH
Q 017184          223 PCTPKGCIELLHRYGF----DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------TKNPE  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i----~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~------------------t~~L~  280 (375)
                      ||....++..|.+..-    .-.|++|+|+|+++.||..+++++...|++|+.+.+.                  ..++.
T Consensus       161 ~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~  240 (375)
T 2vn8_A          161 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVE  240 (375)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHH
Confidence            4433444455543222    3469999999976667999999999999988766432                  12222


Q ss_pred             hhc---cCCcEEEEccCCC-Ccc--cCCCcCCCcEEEEeee
Q 017184          281 EIT---RQADIIISAVGQP-NMV--RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       281 ~~l---~~ADIVIsAvG~p-~~I--~~~~vk~gavVIDvgi  315 (375)
                      +.+   ..+|+||.++|.+ ..+  .-+.++++-.++.+|.
T Consensus       241 ~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          241 EQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             HHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCC
T ss_pred             HHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCC
Confidence            222   3579999988876 222  2246788878888874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.96  E-value=0.0055  Score=55.23  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   44 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999999889999999999999999998765

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.96  E-value=0.007  Score=56.44  Aligned_cols=37  Identities=30%  Similarity=0.278  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.96  E-value=0.0056  Score=56.87  Aligned_cols=38  Identities=26%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   60 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR   60 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.96  E-value=0.0071  Score=55.34  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999999999999999999999998765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.96  E-value=0.0047  Score=63.06  Aligned_cols=73  Identities=22%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------------CCHHhhccCCc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------------KNPEEITRQAD  287 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------------~~L~~~l~~AD  287 (375)
                      ..+|.|||.|.+ |.++|..|++.|.+|++++++.                                  .++++.+++||
T Consensus         8 ~~~I~VIG~G~v-G~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            8 SMNLTIIGSGSV-GLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CceEEEECcCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            358999999885 9999999999999999987641                                  12334567899


Q ss_pred             EEEEccCCC---------Cccc------CCCcCCCcEEEEeee
Q 017184          288 IIISAVGQP---------NMVR------GSWIKPGAVIIDVGI  315 (375)
Q Consensus       288 IVIsAvG~p---------~~I~------~~~vk~gavVIDvgi  315 (375)
                      +||.+++.|         ..+.      ...+++|++||+...
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            999999886         2221      124678888888653

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.95  E-value=0.0085  Score=54.89  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.95  E-value=0.0045  Score=58.99  Aligned_cols=95  Identities=18%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHhh
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEEI  282 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~~  282 (375)
                      ||....++..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                    .++.+.
T Consensus       131 ~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  210 (336)
T 4b7c_A          131 GMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAG  210 (336)
T ss_dssp             SHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHH
Confidence            444455566664433334699999999966679999999999999998876542                    122222


Q ss_pred             c-----cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecC
Q 017184          283 T-----RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       283 l-----~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~  317 (375)
                      +     ...|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       211 ~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          211 LKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecc
Confidence            1     247999999886432 1235778888888888653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.95  E-value=0.01  Score=54.25  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   40 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999998899999999999999999987753

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.95  E-value=0.0059  Score=55.87  Aligned_cols=38  Identities=32%  Similarity=0.377  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   42 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS   42 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998775

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.95  E-value=0.19  Score=48.83  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.- .+.   .-|-+.+.++-|..-  +|+|.+--|-     . ..++.+...-   ++
T Consensus        56 STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~-~~~~~lA~~~---~v  123 (309)
T 4f2g_A           56 STRTRLSFEAGIFQLGGHAVFMST-RDTQLGRGEPVEDSAQVISRM--VDIIMIRTFE-----Q-DIIQRFAENS---RV  123 (309)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECC-SSCEETBEECHHHHHHHHHHH--CSEEEEECSC-----H-HHHHHHHHTC---SS
T ss_pred             ChhhHhhHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCC-----H-HHHHHHHHhC---CC
Confidence            444444557789999999887652 221   123466666666653  6799988663     2 2222222111   23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.|       .+...||=+.+= +.+.|+.| +++|++|++||-++-|.+.++..|...|++|+++.-.        
T Consensus       124 PVINag-------~~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  195 (309)
T 4f2g_A          124 PVINGL-------TNEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKL  195 (309)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGG
T ss_pred             CEEECC-------CCccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHH
Confidence            455653       235668877774 45555555 7999999999999889999999999999999998421        


Q ss_pred             -----------CCCHHhhccCCcEEEEcc----CCC-----------Cc-ccCCCc---CCCcEEEEee
Q 017184          276 -----------TKNPEEITRQADIIISAV----GQP-----------NM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 -----------t~~L~~~l~~ADIVIsAv----G~p-----------~~-I~~~~v---k~gavVIDvg  314 (375)
                                 +.|+++.++.||+|.+-+    |..           .+ |+.+.+   ++++++.=++
T Consensus       196 ~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          196 VDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             SCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence                       357889999999999765    321           12 454433   5778877766

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.95  E-value=0.0072  Score=54.91  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999889999999999999999998765

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.93  E-value=0.0083  Score=56.76  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999999998889999999999999999987763

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=95.93  E-value=0.0059  Score=55.26  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   47 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN   47 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            457899999999999989999999999999999998775

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.92  E-value=0.0073  Score=56.15  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   55 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   55 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.92  E-value=0.0033  Score=60.03  Aligned_cols=94  Identities=17%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhh-
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEI-  282 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~-  282 (375)
                      +|.+..++..+.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.+. 
T Consensus       130 ~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  209 (334)
T 3qwb_A          130 LLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQV  209 (334)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHH
Confidence            334444555555543334699999999666679999999999999988876531                   232222 


Q ss_pred             ---c--cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          283 ---T--RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 ---l--~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                         +  +..|+||.++|.+.+ ---++++++-.++.+|..
T Consensus       210 ~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          210 LKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             HHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCC
Confidence               2  358999999997432 123567888889999864

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.91  E-value=0.0076  Score=55.39  Aligned_cols=37  Identities=24%  Similarity=0.487  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.91  E-value=0.0056  Score=53.40  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=42.4

Q ss_pred             CC-EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------CHHhhcc---CCcEEEEccCC
Q 017184          242 GK-RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------NPEEITR---QADIIISAVGQ  295 (375)
Q Consensus       242 GK-~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------~L~~~l~---~ADIVIsAvG~  295 (375)
                      || +++|.|+++-+|+.++..|+ +|++|+++.|+..          ++++.++   ..|+||..+|.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            66 89999999999999999999 9999999887631          1233333   47999999884

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=95.91  E-value=0.01  Score=55.53  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             CCCEEEEEcC----------------CcccHHHHHHHHhhCCCeEEEEcCCCC---------------C-------HHhh
Q 017184          241 KGKRAVVIGR----------------SNIVGMPAALLLQREDATVSIVHSRTK---------------N-------PEEI  282 (375)
Q Consensus       241 ~GK~vvVIGr----------------s~~VGkpla~lL~~~gAtVtv~hs~t~---------------~-------L~~~  282 (375)
                      +||+|+|-|.                |+-+|.++|..|+.+||.|+++++.+.               .       +.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5899999998                676799999999999999999987531               0       1234


Q ss_pred             ccCCcEEEEccCCCCc
Q 017184          283 TRQADIIISAVGQPNM  298 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~  298 (375)
                      ...+|++|.+++...+
T Consensus        82 ~~~~Dili~aAAvsD~   97 (232)
T 2gk4_A           82 VQDYQVLIHSMAVSDY   97 (232)
T ss_dssp             GGGCSEEEECSBCCSE
T ss_pred             cCCCCEEEEcCccccc
Confidence            5679999999986554

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.91  E-value=0.006  Score=54.96  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.91  E-value=0.0076  Score=55.69  Aligned_cols=38  Identities=11%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            46899999999999999999999999999999998765

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.91  E-value=0.0059  Score=55.04  Aligned_cols=57  Identities=9%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTK---------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ..|+|+|.|+++-+|+.++..|+++| ++|+++.|+..                     ++.+.++.+|+||.++|.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            46899999998888999999999999 89999876521                     24466788999998887654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=95.90  E-value=0.0056  Score=56.27  Aligned_cols=39  Identities=21%  Similarity=0.317  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999999889999999999999999998765

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.90  E-value=0.0077  Score=55.47  Aligned_cols=37  Identities=24%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998775

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.90  E-value=0.07  Score=51.75  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=101.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      .++.| +-+  .|..---+=..++.++|-++.++.-+.+.+   -|-+.+.++-|..-  +|+|.+--|-..  ..+.+.
T Consensus        42 ~la~l-F~e--~STRTR~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA  114 (306)
T 4ekn_B           42 ILATV-FYE--PSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGY--ADIIVLRHPSEG--AARLAS  114 (306)
T ss_dssp             EEEEE-ESS--CCHHHHHHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHH--CSEEEEECSSTT--HHHHHH
T ss_pred             eEEEE-EcC--CChhHHhhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHh--CcEEEEEcCChH--HHHHHH
Confidence            44444 433  354444456778999999988764212221   23355555555543  578998877432  233332


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC--cccHHHHHHHHhhC-CCe
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS--NIVGMPAALLLQRE-DAT  268 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs--~~VGkpla~lL~~~-gAt  268 (375)
                      +..       .+-.+|.|      ..+.+.||-+.+= +.+.|+.| +++|++|++||-+  +-|.+.++..+... |++
T Consensus       115 ~~~-------~vPVINag------~g~~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~  180 (306)
T 4ekn_B          115 EYS-------QVPIINAG------DGSNQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVE  180 (306)
T ss_dssp             HHC-------SSCEEESC------SSSSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCE
T ss_pred             HhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCE
Confidence            222       12334532      1245779988874 45555554 7999999999985  34799999999998 999


Q ss_pred             EEEEcCC---------------------CCCHHhhccCCcEEEEccC
Q 017184          269 VSIVHSR---------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       269 Vtv~hs~---------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      |+++.-.                     +.|+++.++.||+|.+...
T Consensus       181 v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          181 MYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             EEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             EEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            9998422                     3577889999999997654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.90  E-value=0.01  Score=53.31  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE-cCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV-HSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~-hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++ .+.
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~   39 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcC
Confidence            4689999999999999999999999999999988 443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.89  E-value=0.008  Score=52.94  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=43.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------CHH----hhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------NPE----EITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~L~----~~l~~ADIVIsAvG~p  296 (375)
                      +|+|.|+++-+|+.++..|+++|++|+++.|+..               |+.    +.+...|+||.++|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccC
Confidence            6999999888999999999999999999977631               221    4567899999998863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.89  E-value=0.014  Score=56.05  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCC-------------------CC---
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRT-------------------KN---  278 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t-------------------~~---  278 (375)
                      +||....++..|++.++ -.|++|+|+|+|+.+|..++.++... |++|+++.++.                   .+   
T Consensus       152 l~~~~~ta~~~l~~~~~-~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          152 LTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             chhhHHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHH
Confidence            35654555666665443 36999999999966799999999998 99988876431                   12   


Q ss_pred             -HHhhc--cCCcEEEEccCCCCcc--cCCCcCCCcEEEEeeec
Q 017184          279 -PEEIT--RQADIIISAVGQPNMV--RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       279 -L~~~l--~~ADIVIsAvG~p~~I--~~~~vk~gavVIDvgin  316 (375)
                       +.+..  ...|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence             22333  3689999999976433  23567888788888854

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.88  E-value=0.012  Score=54.98  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   43 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA   43 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            358999999999988889999999999999999987764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.88  E-value=0.0072  Score=55.87  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999999999999999999999998765

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=95.87  E-value=0.14  Score=49.46  Aligned_cols=169  Identities=16%  Similarity=0.159  Sum_probs=111.6

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      .|..---+=..++.++|-++.++.-...  ..-|-+.+.++-|+.-  +|+|.+--|-     ... .+.+.-.-   .+
T Consensus        55 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~~~-~~~la~~~---~v  123 (301)
T 2ef0_A           55 PSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF--VEGIAARVFR-----HET-VEALARHA---KV  123 (301)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT--CSEEEEECSS-----HHH-HHHHHHHC---SS
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh--CCEEEEecCC-----hHH-HHHHHHHC---CC
Confidence            3544444667889999999988863210  1124577888888775  6899988762     222 22221111   23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.|       .+...||-+.+= +.+.|+. .+++|++++++|-++-|.+.++..|...|++|+++.-.        
T Consensus       124 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~  195 (301)
T 2ef0_A          124 PVVNAL-------SDRAHPLQALADLLTLKEVF-GGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGL  195 (301)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHH
T ss_pred             CEEeCC-------CCccCchHHHHHHHHHHHHh-CCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHH
Confidence            445632       245679988874 4555554 47999999999997778999999999999999998633        


Q ss_pred             --------CCCHHhhccCCcEEEEcc----CCC-----------Cc-ccCCCc---CCCcEEEEee
Q 017184          276 --------TKNPEEITRQADIIISAV----GQP-----------NM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 --------t~~L~~~l~~ADIVIsAv----G~p-----------~~-I~~~~v---k~gavVIDvg  314 (375)
                              +.|+++.+++||+|.+-.    |..           .+ |+.+.+   |+++++.=++
T Consensus       196 ~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl  261 (301)
T 2ef0_A          196 LKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCL  261 (301)
T ss_dssp             HHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred             HhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence                    356788999999999743    221           12 444433   6788887766

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.87  E-value=0.0063  Score=56.20  Aligned_cols=38  Identities=37%  Similarity=0.437  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR   43 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.87  E-value=0.0098  Score=56.54  Aligned_cols=38  Identities=32%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..|+||.++|-|++.=+|+.+|..|+++||+|.++.++
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999998888999999999999999999876

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.87  E-value=0.0097  Score=53.60  Aligned_cols=37  Identities=14%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            3689999999999899999999999999999987763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.86  E-value=0.011  Score=54.76  Aligned_cols=58  Identities=10%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----C---HH------------hhccCCcEEEEccCCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----N---PE------------EITRQADIIISAVGQPN  297 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----~---L~------------~~l~~ADIVIsAvG~p~  297 (375)
                      +.+|+|+|.|+++.+|+.++..|+++|++|+++.|...    .   +.            .-+.+.|+||.+++...
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~~~   81 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHKS   81 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCCCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCccCC
Confidence            56899999999999999999999999999999987543    1   11            11227899998888543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.85  E-value=0.015  Score=55.91  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCC-----------------C------HHhhccCCcEEEEccC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTK-----------------N------PEEITRQADIIISAVG  294 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~-----------------~------L~~~l~~ADIVIsAvG  294 (375)
                      .+++++|+|.|+++.+|+.++..|+++| ++|+++.|...                 |      +.+.++..|+||.++|
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4689999999999999999999999999 99999876421                 1      2345678999998887


Q ss_pred             CC
Q 017184          295 QP  296 (375)
Q Consensus       295 ~p  296 (375)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.85  E-value=0.0069  Score=55.41  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   42 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR   42 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc
Confidence            35789999999998888999999999999999998765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.84  E-value=0.0085  Score=55.27  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+|+|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999999888999999999999999998654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.83  E-value=0.0066  Score=57.69  Aligned_cols=92  Identities=20%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC------------------CCCC-HHhhc
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS------------------RTKN-PEEIT  283 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs------------------~t~~-L~~~l  283 (375)
                      ||....++..|+..++ -.|.+|+|+|+++.||..+++++...|++|+...+                  +..+ +.+.+
T Consensus       135 ~~~~~ta~~al~~~~~-~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~  213 (321)
T 3tqh_A          135 PTAGLTALQALNQAEV-KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS  213 (321)
T ss_dssp             HHHHHHHHHHHHHTTC-CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC
T ss_pred             hhHHHHHHHHHHhcCC-CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc
Confidence            5444445555644443 46999999986566799999999999998876532                  2334 66667


Q ss_pred             cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeee
Q 017184          284 RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgi  315 (375)
                      +.+|+||.++|.+.+ -.-+.++++-.++.+|.
T Consensus       214 ~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          214 TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCS
T ss_pred             cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCC
Confidence            788999999997654 12356788777888874

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.83  E-value=0.014  Score=53.65  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG   55 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999999999999999999999999987753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.83  E-value=0.0058  Score=58.16  Aligned_cols=90  Identities=17%  Similarity=0.008  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CCHHhhc---
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KNPEEIT---  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~L~~~l---  283 (375)
                      .-++..|.+..---.|++|+|.|+++-+|..++.++...|++|+++.++.                    .++.+.+   
T Consensus       131 ~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          131 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             HHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHH
Confidence            33445553332234699999999966679999999999999998876531                    2222222   


Q ss_pred             --cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 --RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                        ...|+||.++|.+.+ ---+.++++-.++.+|..
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          211 SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             hCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence              247999999996432 122567888888888854

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.82  E-value=0.0084  Score=56.61  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.|+|.|+++-+|+.++..|+++|++|+++.++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999889999999999999999998775

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.82  E-value=0.0066  Score=56.83  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   62 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADID   62 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999998888999999999999999998765

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.81  E-value=0.0092  Score=54.49  Aligned_cols=37  Identities=30%  Similarity=0.439  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999999988664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.81  E-value=0.01  Score=53.92  Aligned_cols=37  Identities=14%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++ |+++.++
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~   39 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecC
Confidence            478999999999988999999999999996 8887765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.81  E-value=0.0088  Score=55.28  Aligned_cols=55  Identities=16%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------C------------------------CHHhhccCCcEEE
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------K------------------------NPEEITRQADIII  290 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------~------------------------~L~~~l~~ADIVI  290 (375)
                      +++|+|+|+++-+|+.++..|+++|++|+++.|..       .                        .+.+.++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            67899999988889999999999999998887653       0                        1335567889999


Q ss_pred             EccCCC
Q 017184          291 SAVGQP  296 (375)
Q Consensus       291 sAvG~p  296 (375)
                      +++|..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            888754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.81  E-value=0.0089  Score=55.19  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            46899999999999888999999999999999988654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.81  E-value=0.0089  Score=55.44  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   42 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999989999999999999999998775

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.80  E-value=0.011  Score=58.07  Aligned_cols=56  Identities=18%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC-----------------------CCCHHhhccCCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR-----------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~-----------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      .++||+|||++|.||.+++..|+.+|.  +|++++..                       +.++.+.+++||+||.++|.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCC
Confidence            578999999844569999998888883  78887543                       24677889999999999996


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      |
T Consensus        87 p   87 (343)
T 3fi9_A           87 P   87 (343)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.80  E-value=0.0095  Score=55.62  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN   60 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999999889999999999999999998765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.80  E-value=0.012  Score=56.49  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEI  282 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~  282 (375)
                      +||....++..|++.++ -.|++|+|+|+|+ +|..+++++...|++|+.+.++.                   .++.+.
T Consensus       146 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~  223 (339)
T 1rjw_A          146 IFCAGVTTYKALKVTGA-KPGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKF  223 (339)
T ss_dssp             GGTHHHHHHHHHHHHTC-CTTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHH
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHH
Confidence            45554555666666543 3689999999977 69999999999999988876431                   232222


Q ss_pred             ----ccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          283 ----TRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 ----l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                          +..+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       224 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          224 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence                246899999999754432  2456777788888854

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=95.80  E-value=0.029  Score=57.04  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=44.6

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcC
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHS  274 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs  274 (375)
                      ..+.|.+|++    +++++.+.+++||+|+|.|.|+ ||..++.+|.+.|++|+ ++.+
T Consensus       210 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGn-VG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          210 RRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGN-VGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence            3478988876    4566789999999999999988 59999999999999876 6665

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.79  E-value=0.015  Score=58.48  Aligned_cols=123  Identities=16%  Similarity=0.218  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---CHHhhccCCcEEEEccCCCCcccCCCcCC--CcEEEEe
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---NPEEITRQADIIISAVGQPNMVRGSWIKP--GAVIIDV  313 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---~L~~~l~~ADIVIsAvG~p~~I~~~~vk~--gavVIDv  313 (375)
                      +++||+|.|||.|++ |+++|.+|.++|++|++++.+..   ...+.+++..|-|. .|..   ..+.+..  ..+|+--
T Consensus         6 ~~~~k~v~viG~G~s-G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~-~g~~---~~~~~~~~~d~vv~sp   80 (451)
T 3lk7_A            6 TFENKKVLVLGLARS-GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV-CGSH---PLELLDEDFCYMIKNP   80 (451)
T ss_dssp             TTTTCEEEEECCTTT-HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEE-ESCC---CGGGGGSCEEEEEECT
T ss_pred             hcCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEE-ECCC---hHHhhcCCCCEEEECC
Confidence            578999999999997 99999999999999999987542   12223332232221 1210   0111111  2344444


Q ss_pred             eecCCCCCC----CCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          314 GINPVEDAK----SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       314 gin~~~~~~----~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      |+++.. |.    ...|-+++++.++-.-.... .+--|-|-.|.-|+.-|+.++++.+
T Consensus        81 gi~~~~-p~~~~a~~~gi~v~~~~e~~~~~~~~-~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           81 GIPYNN-PMVKKALEKQIPVLTEVELAYLVSES-QLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TSCTTS-HHHHHHHHTTCCEECHHHHHHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             cCCCCC-hhHHHHHHCCCcEEeHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHHhc
Confidence            443321 00    00233577776642211111 2223558889999999999988764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.0082  Score=55.46  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=45.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------C------HHhhc-------cCCcEEEEcc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------N------PEEIT-------RQADIIISAV  293 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------~------L~~~l-------~~ADIVIsAv  293 (375)
                      +++||+|+|.|+++-+|+.++..|+++|++|+++.++..            |      +++.+       ..-|+||+.+
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA  104 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNA  104 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence            368999999999888899999999999999999877531            1      12222       2689999888


Q ss_pred             CC
Q 017184          294 GQ  295 (375)
Q Consensus       294 G~  295 (375)
                      |.
T Consensus       105 g~  106 (260)
T 3un1_A          105 GV  106 (260)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.78  E-value=0.01  Score=54.74  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999998888999999999999999998765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.78  E-value=0.0094  Score=57.03  Aligned_cols=74  Identities=16%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------------CCHHhhccCCcEE
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------------KNPEEITRQADII  289 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------------~~L~~~l~~ADIV  289 (375)
                      +.+...+++.|||.|.+ |..++..|.+.|.+|+++ ++.                           .++ +.+..+|+|
T Consensus        14 ~~~~~~~kI~IiGaGa~-G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   90 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAV-GCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV   90 (318)
T ss_dssp             ------CEEEEESCSHH-HHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred             hhhccCCcEEEECcCHH-HHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence            45567889999999885 999999999999999998 432                           122 235789999


Q ss_pred             EEccCCCCc---cc--CCCcCCCcEEEEe
Q 017184          290 ISAVGQPNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       290 IsAvG~p~~---I~--~~~vk~gavVIDv  313 (375)
                      |.++....+   +.  ...++++.+||.+
T Consensus        91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             EECCCGGGHHHHHHHHTTTSCTTCEEEEE
T ss_pred             EEEcccccHHHHHHHHHHhcCCCCEEEEe
Confidence            999986542   11  2467788888876

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.78  E-value=0.0084  Score=54.70  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999999999999999998765

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.78  E-value=0.11  Score=50.39  Aligned_cols=169  Identities=14%  Similarity=0.115  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|..---+=..++.++|.++.++.- .+.   .-|-+.+.++-|..-  +|+|.+--|-     . ..++.+...-   +
T Consensus        46 ~STRTR~SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~-~~~~~lA~~~---~  113 (307)
T 3tpf_A           46 NSTRTRMAFELAITELGGKALFLSS-NDLQLSRGEPVKDTARVIGAM--VDFVMMRVNK-----H-ETLLEFARYS---K  113 (307)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHHH--SSEEEEECSC-----H-HHHHHHHHHC---S
T ss_pred             CCcchHHhHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCC-----h-HHHHHHHHhC---C
Confidence            3444444567789999999887752 221   124466666666653  6899988663     2 2222221111   2


Q ss_pred             cccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCC-CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK-GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~-GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------  275 (375)
                      +-.+|.|       .+...||=+.+=+--++++..+++ |+++++||-++-|.+.++..|...|++|+++.-.       
T Consensus       114 vPVINag-------~~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~  186 (307)
T 3tpf_A          114 APVINAL-------SELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPE  186 (307)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHH
T ss_pred             CCEEeCC-------CCCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence            3345643       235679988775444445545899 9999999998889999999999999999998532       


Q ss_pred             ------------------CCCHHhhccCCcEEEEcc----CC------------CCcccCCCc---CCCcEEEEee
Q 017184          276 ------------------TKNPEEITRQADIIISAV----GQ------------PNMVRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 ------------------t~~L~~~l~~ADIVIsAv----G~------------p~~I~~~~v---k~gavVIDvg  314 (375)
                                        +.|+.+.++.||+|.+-.    |.            +.-|+.+.+   ++++++.=++
T Consensus       187 ~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          187 IWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             HHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence                              246778899999999766    32            112555543   6788887766

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.77  E-value=0.0094  Score=55.22  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999998888999999999999999998774

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.76  E-value=0.0094  Score=57.30  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCCcc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPEEITRQADIIISAVGQPNMV  299 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~~I  299 (375)
                      +-|+|.|||.|.+ |.++|..|+ .|.+|++++++.                     .++.+ +++||+||.+++...-+
T Consensus        11 ~~~~V~vIG~G~M-G~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLM-GRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHH-HHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            5699999999885 999999999 999999998752                     23333 78999999999865422


Q ss_pred             cC------CCcCCCcEEE-Eee
Q 017184          300 RG------SWIKPGAVII-DVG  314 (375)
Q Consensus       300 ~~------~~vk~gavVI-Dvg  314 (375)
                      +.      +-+ ++++++ |.+
T Consensus        88 k~~l~~~l~~~-~~~IlasntS  108 (293)
T 1zej_A           88 KVEVLREVERL-TNAPLCSNTS  108 (293)
T ss_dssp             HHHHHHHHHTT-CCSCEEECCS
T ss_pred             HHHHHHHHhcC-CCCEEEEECC
Confidence            21      223 888775 443

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.76  E-value=0.014  Score=54.30  Aligned_cols=38  Identities=29%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            57899999999999889999999999999999988754

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.76  E-value=0.013  Score=55.34  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------C------HHhhccC--CcEEEEcc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------N------PEEITRQ--ADIIISAV  293 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------~------L~~~l~~--ADIVIsAv  293 (375)
                      .+++++|+|.|+++-+|+.++..|+++|++|+++.|...                 |      +.+.++.  .|+||.++
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            457899999999999999999999999999999876421                 1      2234555  89999888


Q ss_pred             CCC
Q 017184          294 GQP  296 (375)
Q Consensus       294 G~p  296 (375)
                      |..
T Consensus        98 ~~~  100 (333)
T 2q1w_A           98 ASY  100 (333)
T ss_dssp             CCC
T ss_pred             eec
Confidence            753

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.76  E-value=0.0053  Score=54.97  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-C------HHhh---ccCCcEEEEccCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-N------PEEI---TRQADIIISAVGQP  296 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-~------L~~~---l~~ADIVIsAvG~p  296 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++.. |      +++.   +..-|+||+.+|..
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            468999999999888999999999999999999876531 1      2222   34679999998843

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.75  E-value=0.0086  Score=54.93  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998775

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.75  E-value=0.016  Score=56.13  Aligned_cols=54  Identities=30%  Similarity=0.482  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------------CCHHhhccCCcEEEEccC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      .++|+|||+|. +|.+++..|+..|. +|++.+...                          .++ +.+++||+||.++|
T Consensus        14 ~~kI~ViGaG~-vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQ-IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            36899999966 59999999999987 888876541                          344 67899999999998


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        92 ~p~   94 (328)
T 2hjr_A           92 VPR   94 (328)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.74  E-value=0.0067  Score=56.49  Aligned_cols=38  Identities=32%  Similarity=0.371  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999998764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.73  E-value=0.013  Score=54.57  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999998888999999999999999887443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.73  E-value=0.01  Score=55.11  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            4689999999999988999999999999999999876

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.72  E-value=0.011  Score=55.25  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   38 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKS   38 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            5789999999999889999999999999999999775

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.72  E-value=0.093  Score=51.08  Aligned_cols=167  Identities=17%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|-++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-     ... ++.+.-.-+   +
T Consensus        57 STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~~~-~~~lA~~~~---v  124 (315)
T 1pvv_A           57 STRTRVSFEVAMAHLGGHALYLNAQ-DLQLRRGETIADTARVLSRY--VDAIMARVYD-----HKD-VEDLAKYAT---V  124 (315)
T ss_dssp             CSHHHHHHHHHHHHTTSEEEEEEGG-GSTTTTTCCHHHHHHHHTTT--CSEEEEECSS-----HHH-HHHHHHHCS---S
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCc-cccCCCCcCHHHHHHHHHHh--CcEEEEecCc-----hHH-HHHHHHhCC---C
Confidence            4333335577899999999888632 21   124577788888775  6899988762     222 222221112   3


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.     +  .+...||-+.+= +.+.|+. .+++|+++++||-++-|.+.++..|...|++|+++.-.        
T Consensus       125 PVINa-----~--~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~  196 (315)
T 1pvv_A          125 PVING-----L--SDFSHPCQALADYMTIWEKK-GTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKV  196 (315)
T ss_dssp             CEEEE-----E--CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHH
T ss_pred             CEEcC-----C--CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHH
Confidence            44563     2  235679988874 4555555 48999999999997778999999999999999998532        


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc----CCC-----------Cc-ccCCCc---CCCcEEEEee
Q 017184          276 -----------------TKNPEEITRQADIIISAV----GQP-----------NM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv----G~p-----------~~-I~~~~v---k~gavVIDvg  314 (375)
                                       +.|+++.+++||+|.+-.    |..           .+ |+.+.+   ++++++.=++
T Consensus       197 ~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          197 IKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             HHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             HHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence                             346778899999999743    321           12 444433   6788887766

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.70  E-value=0.014  Score=59.27  Aligned_cols=55  Identities=18%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------CHHhhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +++|+|.|++|-+|+.++..|+++|++|+++.|...           .+.+.+..+|+||.++|..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCCc
Confidence            789999999999999999999999999999987632           2356678899999888854

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.70  E-value=0.29  Score=48.12  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.- .+.+   -|-+.+.++-|..-  +|+|.+--|-.      ..++.+...-   ++
T Consensus        81 STRTR~SFE~A~~~LGg~vi~l~~-~~ss~~kgEsl~DTarvLs~y--~D~IviR~~~~------~~~~~lA~~~---~v  148 (340)
T 4ep1_A           81 STRTRVSFEAGMVQLGGHGMFLNG-KEMQMGRGETVSDTAKVLSHY--IDGIMIRTFSH------ADVEELAKES---SI  148 (340)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEES-CC------CCTTHHHHHHHHH--CSEEEEECSCH------HHHHHHHHHC---SS
T ss_pred             CccHHHHHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------hHHHHHHHhC---CC
Confidence            444444557789999999987752 2211   12344555555543  67898886621      2222221111   23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.|       .+...||=+.+= +.+.|+.| .++|++|++||-++-|.+.++..|...|++|+++.-.        
T Consensus       149 PVINag-------~~~~HPtQaLaDl~TI~E~~G-~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  220 (340)
T 4ep1_A          149 PVINGL-------TDDHHPCQALADLMTIYEETN-TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEI  220 (340)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHH
T ss_pred             CEEeCC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHH
Confidence            345642       235679987774 55555554 6999999999998889999999999999999998532        


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc----CCC----------Cc-ccCCCc---CCCcEEEEee
Q 017184          276 -----------------TKNPEEITRQADIIISAV----GQP----------NM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv----G~p----------~~-I~~~~v---k~gavVIDvg  314 (375)
                                       +.|+++.++.||+|.+-.    |..          .+ |+.+.+   |++++|.=++
T Consensus       221 ~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          221 VKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             HHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence                             246778899999998654    211          12 555433   5788887766

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.69  E-value=0.015  Score=49.25  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------------CHHh-hccCCcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------------NPEE-ITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------------~L~~-~l~~ADIVIsAvG  294 (375)
                      ..++++|+|.|. +|+.++..|.+.|..|+++.+...                         .+.+ .+.+||.||.+++
T Consensus         2 ~~~~vlI~G~G~-vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSI-LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSH-HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            357899999977 599999999999999999877420                         0222 3778999999988


Q ss_pred             CC
Q 017184          295 QP  296 (375)
Q Consensus       295 ~p  296 (375)
                      ..
T Consensus        81 ~d   82 (153)
T 1id1_A           81 ND   82 (153)
T ss_dssp             CH
T ss_pred             Ch
Confidence            54

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.69  E-value=0.013  Score=55.62  Aligned_cols=58  Identities=12%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------------C------HHhhccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------------N------PEEITRQA  286 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------------~------L~~~l~~A  286 (375)
                      ++++++|+|.|+++-+|+.++..|+++|++|+++.+...                          |      +.+.++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467899999999998999999999999999999876321                          1      33556789


Q ss_pred             cEEEEccCCC
Q 017184          287 DIIISAVGQP  296 (375)
Q Consensus       287 DIVIsAvG~p  296 (375)
                      |+||.++|..
T Consensus       104 d~vih~A~~~  113 (352)
T 1sb8_A          104 DYVLHQAALG  113 (352)
T ss_dssp             SEEEECCSCC
T ss_pred             CEEEECCccc
Confidence            9999888853

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.69  E-value=0.0092  Score=59.29  Aligned_cols=71  Identities=23%  Similarity=0.311  Sum_probs=52.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------CCHHhhccCCcEEEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------~~L~~~l~~ADIVIs  291 (375)
                      ++.|||.|.+ |.+++..|++ |.+|++++++.                                .++.+.+++||+||.
T Consensus         2 kI~VIG~G~v-G~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGYV-GLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             EEEEECCSHH-HHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCHH-HHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            6899999884 9999999998 99999987641                                123455678999999


Q ss_pred             ccCCCC----------ccc------CCCcCCCcEEEEeeecC
Q 017184          292 AVGQPN----------MVR------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       292 AvG~p~----------~I~------~~~vk~gavVIDvgin~  317 (375)
                      +++.|.          .+.      .. +++|.+||+...++
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~  120 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIP  120 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence            999872          111      12 67899999854443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.68  E-value=0.011  Score=56.46  Aligned_cols=90  Identities=18%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH----hhc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE----EIT  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~----~~l  283 (375)
                      ..++..|.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.                   .+..    +.+
T Consensus       131 ~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          131 MTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREIT  210 (333)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHh
Confidence            34455555333224699999999855579999999999999998876542                   1221    222


Q ss_pred             --cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 --RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                        +..|+||.++|...+ ---+.++++-.++.+|..
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          211 GGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             TTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecC
Confidence              258999999997322 122567888888999864

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.68  E-value=0.0078  Score=54.64  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            468999999999999999999999999999999887

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.66  E-value=0.015  Score=54.59  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   80 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD   80 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998889999999999999999988665

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.66  E-value=0.012  Score=54.41  Aligned_cols=37  Identities=27%  Similarity=0.091  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +.+|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   39 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT   39 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999988899999999999999999987763

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=95.66  E-value=0.0077  Score=56.45  Aligned_cols=37  Identities=41%  Similarity=0.565  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   41 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARN   41 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999998888999999999999999998765

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.65  E-value=0.11  Score=51.50  Aligned_cols=178  Identities=16%  Similarity=0.191  Sum_probs=113.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHh
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILN  193 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~  193 (375)
                      .++.| +-+  .|..---+=..++.++|.++.++.....  -.-|-+.+.++-|..-  +|+|.+-.|  .|-..+.+.+
T Consensus        68 ~va~l-F~e--~STRTR~SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~--~D~IviR~~--~~~~~~~lA~  140 (353)
T 3sds_A           68 TVAMM-FSK--RSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM--VSCIVARVG--PHSDIANLAK  140 (353)
T ss_dssp             EEEEE-ESS--CCHHHHHHHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS--CSEEEEECS--SHHHHHHHHH
T ss_pred             EEEEE-ecC--CchhHHHHHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh--cCEEEEEeC--ChHHHHHHHh
Confidence            34444 433  3444444557788999999987643211  0124577777777764  789988755  2212222222


Q ss_pred             hCCcccccCccccchhhhcccCCCccccccCCHHH-HHHHHHHhCC------------CCCCCEEEEEcCCcccHHHHHH
Q 017184          194 AVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGF------------DIKGKRAVVIGRSNIVGMPAAL  260 (375)
Q Consensus       194 ~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i------------~l~GK~vvVIGrs~~VGkpla~  260 (375)
                      ..       ++-.+|.|       .+.+.||=+.+ ++.+.|+.|-            .++|++|++||-++-|.+.++.
T Consensus       141 ~s-------~vPVINag-------~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~  206 (353)
T 3sds_A          141 HS-------SVPVINAL-------CDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAI  206 (353)
T ss_dssp             HC-------SSCEEEEE-------CSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCHHHHHHHH
T ss_pred             hC-------CCCEEECC-------CCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCchHHHHHHH
Confidence            21       23445643       13467997777 4555665553            2599999999999999999999


Q ss_pred             HHhhCCCeEEEEcCC---------------------------CCCHHhhccCCcEEEEcc----CC------------CC
Q 017184          261 LLQREDATVSIVHSR---------------------------TKNPEEITRQADIIISAV----GQ------------PN  297 (375)
Q Consensus       261 lL~~~gAtVtv~hs~---------------------------t~~L~~~l~~ADIVIsAv----G~------------p~  297 (375)
                      .|...|++|+++.-.                           +.++++.+++||+|++-+    |.            +.
T Consensus       207 ~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y  286 (353)
T 3sds_A          207 AATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDF  286 (353)
T ss_dssp             HHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTC
T ss_pred             HHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCc
Confidence            999999999998422                           136778899999999754    42            11


Q ss_pred             cccCCC-----cCCCcEEEEee
Q 017184          298 MVRGSW-----IKPGAVIIDVG  314 (375)
Q Consensus       298 ~I~~~~-----vk~gavVIDvg  314 (375)
                      -|+.+.     .+++++|.=++
T Consensus       287 ~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          287 KVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CBCHHHHHHHTCCTTCEEEECS
T ss_pred             eecHHHHhhcccCCCcEEECCC
Confidence            256554     36778887766

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=95.65  E-value=0.11  Score=50.42  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.-. +.+   -|-+.+.++-|+.-  +|+|.+--|-     ... ++.+.-.-   ++
T Consensus        50 STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~~~-~~~lA~~~---~v  117 (307)
T 2i6u_A           50 STRTRFSFELGIAQLGGHAVVVDSG-STQLGRDETLQDTAKVLSRY--VDAIVWRTFG-----QER-LDAMASVA---TV  117 (307)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEEGG-GSGGGGTCCHHHHHHHHHHH--EEEEEEECSS-----HHH-HHHHHHHC---SS
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCC-----hhH-HHHHHhhC---CC
Confidence            4333335577899999999888632 111   12355565555553  5788888662     222 22221111   23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-------  275 (375)
                      -.+|.|       .+...||-+.+= +.+.++. .+++|++++++|-+ +-|.+.++..|...|++|+++.-.       
T Consensus       118 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~  189 (307)
T 2i6u_A          118 PVINAL-------SDEFHPCQVLADLQTIAERK-GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPS  189 (307)
T ss_dssp             CEEESC-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHH
T ss_pred             CEEcCC-------CCCcCccHHHHHHHHHHHHh-CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHH
Confidence            445632       245679988874 4455544 47999999999997 567999999999999999998532       


Q ss_pred             ------------------CCCHHhhccCCcEEEEcc
Q 017184          276 ------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 ------------------t~~L~~~l~~ADIVIsAv  293 (375)
                                        +.|+++.++.||+|.+-.
T Consensus       190 ~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          190 VRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             HHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence                              346778899999999743

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.64  E-value=0.012  Score=54.71  Aligned_cols=56  Identities=14%  Similarity=0.265  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------CCHHhhcc--CCcEEEEccCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------KNPEEITR--QADIIISAVGQP  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------~~L~~~l~--~ADIVIsAvG~p  296 (375)
                      .+++|+|.|+++.+|+.++..|+++|++|+++.++.       ..+.+.++  ..|+||.++|..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            468999999999999999999999999998876542       12445666  899999888854

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.64  E-value=0.0099  Score=60.74  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------------------------CCHHhhccCCc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------------------------KNPEEITRQAD  287 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------------------------~~L~~~l~~AD  287 (375)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++.                                   .++ +.+++||
T Consensus        55 ~kVaVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aD  132 (460)
T 3k6j_A           55 NSVAIIGGGTM-GKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCD  132 (460)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCC
Confidence            78999999875 9999999999999999997642                                   233 3578999


Q ss_pred             EEEEccCCCC-----ccc--CCCcCCCcEEEEeee
Q 017184          288 IIISAVGQPN-----MVR--GSWIKPGAVIIDVGI  315 (375)
Q Consensus       288 IVIsAvG~p~-----~I~--~~~vk~gavVIDvgi  315 (375)
                      +||.|++..-     ++.  .+.+++++++++...
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            9999998532     111  245788999887543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.64  E-value=0.018  Score=55.74  Aligned_cols=53  Identities=19%  Similarity=0.302  Sum_probs=42.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|||+|. ||.+++..|+..|. +|+++...                          |.++ +.+++||+||.++|.
T Consensus         5 ~kI~VIGaG~-vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            5899999966 69999999999986 88877643                          1345 678999999999987


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        83 p~   84 (322)
T 1t2d_A           83 TK   84 (322)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.64  E-value=0.016  Score=53.21  Aligned_cols=56  Identities=9%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC------HHhhcc--CCcEEEEccCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------PEEITR--QADIIISAVGQP  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~------L~~~l~--~ADIVIsAvG~p  296 (375)
                      .-|+|+|.|+++-+|+.++..|+++|++|+++.|..-|      +.+.++  ..|+||.++|..
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            46899999999999999999999999999999876433      345566  799999988854

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.64  E-value=0.024  Score=54.71  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +.++|+|+|.|+++-+|+.++..|+++|++|+++.|...                     .+.+.++..|+||.++|..
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~  104 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM  104 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECceec
Confidence            446799999999999999999999999999999876521                     1345677899999888753

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.63  E-value=0.0089  Score=55.49  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.++.||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            345789999999998888999999999999999998775

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=95.63  E-value=0.12  Score=51.11  Aligned_cols=192  Identities=15%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             eeecHHHHHHHHHHHHHHHHHhHhccC---CC-ceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCC---------
Q 017184           86 VIDGKAVAKQIRDEITGEVSRMKDAIG---VV-PGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLP---------  152 (375)
Q Consensus        86 ildGk~la~~i~~~lk~~v~~l~~~~g---~~-P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~---------  152 (375)
                      +|+=+.+.++=.+.|-+..+++|+...   .+ -.++.+ +-+  .|..---+=..++.++|-++.++.-.         
T Consensus        26 lLsi~Dls~~ei~~ll~~A~~~k~~~~~~~L~gK~va~l-F~e--pSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~~~~~  102 (359)
T 3kzn_A           26 FLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALV-FFN--PSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFN  102 (359)
T ss_dssp             BSCGGGSCHHHHHHHHHHHHHHHHCCCCCTTTTCEEEEE-ESS--CCHHHHHHHHHHHHHTTCEEEEECHHHHSCCEECS
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHhcCCCCcCCCCEEEEE-ecC--CCccHHHHHHHHHHHcCCCEEecCCCCcccccccc
Confidence            444444443333344444444543311   11 244444 433  34433335577899999998766311         


Q ss_pred             CC-----CCHHHHHHHHHHhhcCCCccEEEEeC-CCCCCC---CHHHHHhhCCcccccCccccchhhhcccCCCcccccc
Q 017184          153 ED-----TSEQEVLKHISVFNDDPSVHGILVQL-PLPCHI---DEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIP  223 (375)
Q Consensus       153 ~~-----vs~~el~~~I~~LN~D~~V~GIlVql-PLp~~i---~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~P  223 (375)
                      ..     -..|.+.+.++-+...  +++|.+-- |.....   .....++.+.-.-+   +-..|.     |+   ...|
T Consensus       103 ~~s~~~~~k~Es~~DTarvls~y--~D~iviR~~~~~~~~~~~~~~~~~~~~a~~~~---vPVIN~-----g~---~~HP  169 (359)
T 3kzn_A          103 LGTVMDGDTEEHIAEVARVLGRY--VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSP---VPVINM-----ET---ITHP  169 (359)
T ss_dssp             SSCCCCSSCCEEHHHHHHHHHHH--CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCS---SCEEES-----SS---SCCH
T ss_pred             ccccccCcccchHHHHHHHHhcc--CcEEEEEccccccchhcchhhHHHHHHHHhCC---CcccCc-----cc---ccCc
Confidence            00     1224466666666543  77888863 211000   01122222211111   223343     21   3468


Q ss_pred             CCHHH-HHHHHHHhC-CCCCCCEEEEEcC------CcccHHHHHHHHhhCCCeEEEEcCC--------------------
Q 017184          224 CTPKG-CIELLHRYG-FDIKGKRAVVIGR------SNIVGMPAALLLQREDATVSIVHSR--------------------  275 (375)
Q Consensus       224 cT~~g-vi~lL~~~~-i~l~GK~vvVIGr------s~~VGkpla~lL~~~gAtVtv~hs~--------------------  275 (375)
                      |=+.+ ++.+.|+.| .+++|++++++|.      ++-|.+.+..++...|++|+++.-.                    
T Consensus       170 tQaL~Dl~Ti~e~~G~~dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~  249 (359)
T 3kzn_A          170 CQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAES  249 (359)
T ss_dssp             HHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCccccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhh
Confidence            87776 566666666 4799999999875      2346889999999999999987642                    


Q ss_pred             ------CCCHHhhccCCcEEEEcc
Q 017184          276 ------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 ------t~~L~~~l~~ADIVIsAv  293 (375)
                            +.|+++.+++||+|.+-.
T Consensus       250 g~~i~~~~d~~eav~~aDvvyt~r  273 (359)
T 3kzn_A          250 GGSLQVSHDIDSAYAGADVVYAKS  273 (359)
T ss_dssp             SCEEEEECCHHHHHTTCSEEEEEC
T ss_pred             CCCcccccCHHHHhcCCeEEEEEE
Confidence                  347788999999998654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.62  E-value=0.013  Score=54.70  Aligned_cols=37  Identities=30%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++||+|+|.|+++-+|+.++..|+++|++|+++.|..
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            3689999999988899999999999999999987653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.62  E-value=0.0055  Score=57.10  Aligned_cols=36  Identities=17%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      .+++++|+|||.|++ |.+++..|...|. +++++++.
T Consensus        28 ~l~~~~VlVvG~Gg~-G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           28 ALKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCeEEEEeeCHH-HHHHHHHHHHcCCCeEEEEcCC
Confidence            356899999999996 9999999999996 89998654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.62  E-value=0.012  Score=54.58  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.+
T Consensus         7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A            7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            3689999999999888899999999999999999866

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.62  E-value=0.018  Score=52.07  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   41 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            5789999999999899999999999999999987763

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.62  E-value=0.11  Score=50.94  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|..---+=..++.++|.++.++.- .+.   .-|-+.+.++-|..-  +|+|.+--|-     . ..++.+.-.-   +
T Consensus        55 ~STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~-----~-~~~~~lA~~s---~  122 (335)
T 1dxh_A           55 TSTRTRCAFEVAAYDQGANVTYIDP-NSSQIGHKESMKDTARVLGRM--YDAIEYRGFK-----Q-EIVEELAKFA---G  122 (335)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCBTTTBCHHHHHHHHHHH--CSEEEEECSC-----H-HHHHHHHHHS---S
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHhh--CCEEEEecCC-----h-hHHHHHHHhC---C
Confidence            3544444567889999999988753 222   123466666666553  5788888662     2 2222222111   2


Q ss_pred             cccchhhhcccCCCccccccCCHHHHHHHHHHhCC-CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGF-DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i-~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      +-.+|.|       .+.+.||=+.+=+--++++.. +++|++++++|-+ +-|++.++..+...|++|+++.-.      
T Consensus       123 vPVINa~-------~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (335)
T 1dxh_A          123 VPVFNGL-------TDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHD  195 (335)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            3445632       245679988885444444444 8999999999996 557999999999999999998522      


Q ss_pred             -------------------CCCHHhhccCCcEEEEcc----CC-------------CCcccCCCc----CCCcEEEEee
Q 017184          276 -------------------TKNPEEITRQADIIISAV----GQ-------------PNMVRGSWI----KPGAVIIDVG  314 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsAv----G~-------------p~~I~~~~v----k~gavVIDvg  314 (375)
                                         +.|+.+.++.||+|.+-+    |.             +.-|+.+.+    +|++++.=++
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          196 EFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence                               356778899999999743    32             112555444    6788887776

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.60  E-value=0.015  Score=59.28  Aligned_cols=74  Identities=20%  Similarity=0.425  Sum_probs=54.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCC---------------------------------CCHHhhccCCc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRT---------------------------------KNPEEITRQAD  287 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t---------------------------------~~L~~~l~~AD  287 (375)
                      .+|.|||.|.+ |.++|..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus        10 mkI~VIG~G~v-G~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A           10 SKVVCVGAGYV-GGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            58999999885 99999999988  68999987541                                 12235567899


Q ss_pred             EEEEccCCCCc--------------cc------CCCcCCCcEEEEeeecC
Q 017184          288 IIISAVGQPNM--------------VR------GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       288 IVIsAvG~p~~--------------I~------~~~vk~gavVIDvgin~  317 (375)
                      +||.+++.|.-              +.      ...+++|.+|||....+
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            99999987631              11      12467899999965443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.59  E-value=0.042  Score=55.93  Aligned_cols=84  Identities=23%  Similarity=0.323  Sum_probs=66.6

Q ss_pred             HHHHHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC---------------CCCHHhhc
Q 017184          228 GCIELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR---------------TKNPEEIT  283 (375)
Q Consensus       228 gvi~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~---------------t~~L~~~l  283 (375)
                      -+++.+++...+++||+|.|+|-+         +.-...++..|.++|++|.+..-.               ..++++.+
T Consensus       319 ~vv~~l~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~  398 (444)
T 3vtf_A          319 YAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALL  398 (444)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHH
T ss_pred             HHHHHHHHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHH
Confidence            356777777778999999999965         223677889999999999998643               24677889


Q ss_pred             cCCcEEEEccCCCCcccCCCcCCCcEEEEe
Q 017184          284 RQADIIISAVGQPNMVRGSWIKPGAVIIDV  313 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~~~~vk~gavVIDv  313 (375)
                      ++||.||.++..+.|-.-+|  ++.+|||.
T Consensus       399 ~~aDavvi~t~h~ef~~ld~--~~~vv~D~  426 (444)
T 3vtf_A          399 DQVEGVIIATAWPQYEGLDY--RGKVVVDG  426 (444)
T ss_dssp             HHCSEEEECSCCGGGGGSCC--TTCEEEES
T ss_pred             hCCCEEEEccCCHHHhCCCc--CCCEEEEC
Confidence            99999999999988755555  46799994

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.59  E-value=0.16  Score=49.92  Aligned_cols=140  Identities=11%  Similarity=0.121  Sum_probs=92.5

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhh
Q 017184          134 NKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G  210 (375)
                      +=..++.++|.++.++.- .+.   .-|-+.+.++-|..-  +|+|.+--|-     . ..++.+...-   ++-.+|.|
T Consensus        80 SFE~A~~~LGg~~i~l~~-~~ssl~kgEsl~DTarvLs~~--~D~IviR~~~-----~-~~~~~lA~~~---~vPVINag  147 (339)
T 4a8t_A           80 SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVER-----H-HSIVDLANCA---TIPVINGM  147 (339)
T ss_dssp             HHHHHHHHTTCEEEEECC-C-CCSSSSSCHHHHHHHHHHH--CSEEEEECSS-----H-HHHHHHHHHC---SSCEEECC
T ss_pred             HHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCc-----H-HHHHHHHHhC---CCCEEECC
Confidence            556789999999987642 111   123455555555553  6799888662     2 2222221111   23345642


Q ss_pred             hcccCCCccccccCCHHHH-HHHHHHh--CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC------------
Q 017184          211 RLAMRGREPLFIPCTPKGC-IELLHRY--GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------  275 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gv-i~lL~~~--~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~------------  275 (375)
                             .+.+.||=+.+= +.+.|+.  |-+++|++|++||-++-|.+.++..|...|++|+++.-.            
T Consensus       148 -------~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~  220 (339)
T 4a8t_A          148 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  220 (339)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH
Confidence                   245679987774 4555554  337999999999998889999999999999999998533            


Q ss_pred             -------------CCCHHhhccCCcEEEEcc
Q 017184          276 -------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 -------------t~~L~~~l~~ADIVIsAv  293 (375)
                                   +.|++ .++.||+|.+-+
T Consensus       221 ~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          221 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             HHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             HHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence                         23556 789999999744

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=95.59  E-value=0.0098  Score=54.00  Aligned_cols=36  Identities=33%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.+
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r   36 (246)
T 2uvd_A            1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYA   36 (246)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            368999999999988999999999999999999877

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.58  E-value=0.011  Score=54.87  Aligned_cols=54  Identities=17%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhcc--CCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITR--QADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~--~ADIVIsAvG~  295 (375)
                      ||+|+|.|+++-+|+.++..|+++|++|+++.+...             .+.+.++  +.|+||.++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            689999999998999999999999999998875421             2334454  48999988875

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.58  E-value=0.0085  Score=55.90  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++.||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998888999999999999999998775

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.57  E-value=0.011  Score=61.35  Aligned_cols=73  Identities=23%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             CCC-CEEEEEcCCcccHHHHHHHHhhC------CCeEEEEcCCC-------------------CCHHhhccCCcEEEEcc
Q 017184          240 IKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSRT-------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~G-K~vvVIGrs~~VGkpla~lL~~~------gAtVtv~hs~t-------------------~~L~~~l~~ADIVIsAv  293 (375)
                      ++| |+|.|||.|.+ |.+++..|.+.      |.+|++..+..                   .++.+.+++||+||.++
T Consensus        51 L~GiKkIgIIGlGsM-G~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHH-HHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            689 99999999986 99999999998      88888775431                   24567889999999999


Q ss_pred             CCC---Cccc--CCCcCCCcEEEEe
Q 017184          294 GQP---NMVR--GSWIKPGAVIIDV  313 (375)
Q Consensus       294 G~p---~~I~--~~~vk~gavVIDv  313 (375)
                      +..   .++.  ...+++|++|+..
T Consensus       130 P~~~~~eVl~eI~p~LK~GaILs~A  154 (525)
T 3fr7_A          130 SDAAQADNYEKIFSHMKPNSILGLS  154 (525)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred             ChHHHHHHHHHHHHhcCCCCeEEEe
Confidence            842   2332  1346889886654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.57  E-value=0.026  Score=50.46  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARS   35 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999888999999999999999998775

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.56  E-value=0.01  Score=56.31  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------CCHHhhcc--CCcEEE
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------KNPEEITR--QADIII  290 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------~~L~~~l~--~ADIVI  290 (375)
                      ..++|+|+|++|-+|+.++..|++.|.+|+++.|..                            .++.+.++  .+|+||
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            467999999988899999999999999999987754                            12345667  899999


Q ss_pred             EccCCCC
Q 017184          291 SAVGQPN  297 (375)
Q Consensus       291 sAvG~p~  297 (375)
                      .++|..+
T Consensus        89 ~~a~~~n   95 (346)
T 3i6i_A           89 STVGGES   95 (346)
T ss_dssp             ECCCGGG
T ss_pred             ECCchhh
Confidence            9888643

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.56  E-value=0.014  Score=54.21  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4799999999999888999999999999999998775

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.56  E-value=0.008  Score=61.26  Aligned_cols=70  Identities=16%  Similarity=0.259  Sum_probs=53.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------CCHHhhcc---CCcEEEEccCCCCc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------KNPEEITR---QADIIISAVGQPNM  298 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------~~L~~~l~---~ADIVIsAvG~p~~  298 (375)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++.                      .++++.++   ++|+||.+++.+..
T Consensus         3 kIgVIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEChHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            6999999885 9999999999999999998752                      23445444   59999999987532


Q ss_pred             ----cc--CCCcCCCcEEEEee
Q 017184          299 ----VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       299 ----I~--~~~vk~gavVIDvg  314 (375)
                          +.  ...+++|.+|||++
T Consensus        82 v~~vl~~l~~~l~~g~iIId~s  103 (478)
T 1pgj_A           82 TDSTIEQLKKVFEKGDILVDTG  103 (478)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECC
T ss_pred             HHHHHHHHHhhCCCCCEEEECC
Confidence                21  13467899999987

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.55  E-value=0.012  Score=52.31  Aligned_cols=55  Identities=24%  Similarity=0.295  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------CHHhhcc------CCcEEEEccCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------NPEEITR------QADIIISAVGQ  295 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~L~~~l~------~ADIVIsAvG~  295 (375)
                      .||+++|.|+++-+|+.++..|+++|++|+++.++..               ++.+.++      ..|+||..+|.
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            3789999999999999999999999999999876532               1223333      67999988874

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=95.53  E-value=0.23  Score=48.08  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHH
Q 017184          116 GLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSIL  192 (375)
Q Consensus       116 ~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~  192 (375)
                      +....++-+ | |..---+=..++.++|.++.++.-. +.   .-|-+.+.++-|..- .+|+|.+--|-..  ..+.+.
T Consensus        37 k~la~lF~e-~-STRTR~SFE~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvLs~~-~~D~iviR~~~~~--~~~~la  110 (304)
T 3r7f_A           37 KFAANLFFE-P-STRTRFSFEVAEKKLGMNVLNLDGT-STSVQKGETLYDTIRTLESI-GVDVCVIRHSEDE--YYEELV  110 (304)
T ss_dssp             CEEEEEESS-C-CSHHHHHHHHHHHHTTCEEEEEETT-STTSCSSSCHHHHHHHHHHH-TCCEEEEECSSTT--CHHHHH
T ss_pred             CEEEEEecC-C-ChhHHHhHHHHHHHCCCeEEEECcc-cccCCCCCCHHHHHHHHHHh-cCCEEEEecCChh--HHHHHH
Confidence            344444433 2 4333335577899999999887531 11   123355555555441 3579999877433  334443


Q ss_pred             hhCCcccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCc--ccHHHHHHHHhhCCCeE
Q 017184          193 NAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSN--IVGMPAALLLQREDATV  269 (375)
Q Consensus       193 ~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~--~VGkpla~lL~~~gAtV  269 (375)
                      +..       ++-.+|.|      ..+.+.||=+.+= +.+.|+.| +++|++|+++|-+.  -|.+.++..+...|++|
T Consensus       111 ~~~-------~vPVINag------dg~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v  176 (304)
T 3r7f_A          111 SQV-------NIPILNAG------DGCGQHPTQSLLDLMTIYEEFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARV  176 (304)
T ss_dssp             HHC-------SSCEEESC------CTTSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEE
T ss_pred             HhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEE
Confidence            322       12344532      1245679988874 45555555 79999999999863  37999999999999999


Q ss_pred             EEEcCC-----------CCCHHhhccCCcEEEEccC
Q 017184          270 SIVHSR-----------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       270 tv~hs~-----------t~~L~~~l~~ADIVIsAvG  294 (375)
                      +++.-.           +.++++.++.||+|.+-..
T Consensus       177 ~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~  212 (304)
T 3r7f_A          177 LFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRI  212 (304)
T ss_dssp             EEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCC
T ss_pred             EEECCCccCcchhhcCccCCHHHHhCCCCEEEeccc
Confidence            998532           3478899999999998653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.53  E-value=0.0068  Score=58.55  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhc
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEIT  283 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l  283 (375)
                      ||....++..|.+..---.|++|+|+|+++.+|..++.++...|++|+++.++.                   .++.+.+
T Consensus       149 ~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~  228 (353)
T 4dup_A          149 PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVI  228 (353)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHH
Confidence            333344445553332223699999997666679999999999999988876531                   2333332


Q ss_pred             -----cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 -----RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 -----~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                           +..|+||.++|.+.+ -.-+.++++-.++.+|..
T Consensus       229 ~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          229 KAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             HHHHSSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHhCCCceEEEECCCHHHHHHHHHHhccCCEEEEEEec
Confidence                 258999999997643 123567888888888854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.53  E-value=0.019  Score=54.92  Aligned_cols=54  Identities=17%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------------CCHHhhccCCcEEEEccC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      .++|.|||+|. +|.+++..|+..|. +|+++++..                          .++ +.+++||+||.++|
T Consensus         4 ~~kI~VIGaG~-~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQ-IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            46899999976 59999999999997 899886542                          233 56789999999998


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.52  E-value=0.012  Score=53.94  Aligned_cols=38  Identities=29%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+|+|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARD   62 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999998888999999999999999998775

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.52  E-value=0.017  Score=53.19  Aligned_cols=38  Identities=16%  Similarity=0.118  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -.++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            35799999999999888999999999999999998765

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.52  E-value=0.015  Score=54.20  Aligned_cols=55  Identities=18%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-C-----------------------------CHHhhccCCcEEEE
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-K-----------------------------NPEEITRQADIIIS  291 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~-----------------------------~L~~~l~~ADIVIs  291 (375)
                      .++|+|+|+++-+|+.++..|+++|++|+++.|+. .                             .+.+.++.+|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            57899999988889999999999999999887653 0                             13456778899998


Q ss_pred             ccCCC
Q 017184          292 AVGQP  296 (375)
Q Consensus       292 AvG~p  296 (375)
                      ++|..
T Consensus        84 ~a~~~   88 (321)
T 3c1o_A           84 ALPFP   88 (321)
T ss_dssp             CCCGG
T ss_pred             CCCcc
Confidence            88753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.51  E-value=0.023  Score=55.31  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=44.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------------CCHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------------KNPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------------~~L~~~l~~ADIVIsA  292 (375)
                      .+.++|.|||+|. ||.+++..|+..|. +|+++....                          .+. +.+++||+||.+
T Consensus         5 m~~~kI~viGaG~-vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGM-IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEEC
T ss_pred             CcCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEc
Confidence            3567999999966 59999999998887 888875431                          233 678999999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus        83 ag~p~   87 (324)
T 3gvi_A           83 AGVPR   87 (324)
T ss_dssp             CSCCC
T ss_pred             cCcCC
Confidence            99653

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.51  E-value=0.091  Score=51.41  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|..---+=..++.++|-++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+--|-     ... ++.+.-.-   +
T Consensus        68 pSTRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~-----~~~-~~~lA~~~---~  135 (325)
T 1vlv_A           68 RSTRTRLAFETAFAEEGGHPIFLSP-NDIHLGAKESLEDTARVLGRM--VDAIMFRGYK-----QET-VEKLAEYS---G  135 (325)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHTT--CSEEEEESSC-----HHH-HHHHHHHH---C
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCCCCcCHHHHHHHHHHh--CCEEEEECCC-----hHH-HHHHHHhC---C
Confidence            3544444667889999999988763 2221   24577777777764  6899988763     222 22221111   1


Q ss_pred             cccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      +-.+|.     +  .+...||=+.+= +.+.|+. .+++|++++++|-+ +-|.+.++..|...|++|+++.-.      
T Consensus       136 vPVINa-----~--~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~  207 (325)
T 1vlv_A          136 VPVYNG-----L--TDEFHPTQALADLMTIEENF-GRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRS  207 (325)
T ss_dssp             SCEEES-----C--CSSCCHHHHHHHHHHHHHHH-SCSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCH
T ss_pred             CCEEeC-----C--CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCH
Confidence            344553     2  235679988874 4555555 48999999999996 557999999999999999998532      


Q ss_pred             -------------------CCCHHhhccCCcEEEEc
Q 017184          276 -------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsA  292 (375)
                                         +.|+++.+++||+|.+-
T Consensus       208 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          208 DVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             HHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence                               34677889999999974

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.51  E-value=0.027  Score=52.42  Aligned_cols=37  Identities=16%  Similarity=0.074  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+|+|.|+++-+|+.++..|+++|++|+++.|.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3579999999998889999999999999999987653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.51  E-value=0.011  Score=52.92  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999999999999999999999999998775

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.50  E-value=0.018  Score=52.30  Aligned_cols=39  Identities=8%  Similarity=-0.012  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCC---CeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~g---AtVtv~hs~t  276 (375)
                      .++++|+++|.|+++-+|+.++..|+++|   ++|+++.|+.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            45789999999999999999999999999   8999987753

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.50  E-value=0.012  Score=53.51  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999988889999999999999999998763

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.49  E-value=0.021  Score=53.24  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++.||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36889999999998888999999999999999998773

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.49  E-value=0.016  Score=56.52  Aligned_cols=57  Identities=19%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-----------------------CCHHhhccCCcEEEEcc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-----------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-----------------------~~L~~~l~~ADIVIsAv  293 (375)
                      +-.+++|+|||+|. ||.+++..|+..+.  ++.+++...                       .+..+.+++||+||.++
T Consensus         6 ~~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A            6 DKDHQKVILVGDGA-VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA   84 (326)
T ss_dssp             -CCCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             cCCCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence            45788999999977 59999999998875  788886531                       12356789999999999


Q ss_pred             CCC
Q 017184          294 GQP  296 (375)
Q Consensus       294 G~p  296 (375)
                      |.|
T Consensus        85 g~~   87 (326)
T 3vku_A           85 GAP   87 (326)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            965

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.49  E-value=0.016  Score=53.71  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999998888999999999999999987663

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.45  E-value=0.013  Score=54.85  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRT   61 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999998775

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.44  E-value=0.023  Score=52.71  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      ||+|+|.|+++-+|+.++..|+++|++|+++.|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999988765

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=95.44  E-value=0.01  Score=61.73  Aligned_cols=97  Identities=16%  Similarity=0.243  Sum_probs=78.0

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh----CCC-------eEEEEcCC-------------
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR----EDA-------TVSIVHSR-------------  275 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~----~gA-------tVtv~hs~-------------  275 (375)
                      +-.-+|-.|++..|+-.+.+++.-++|+.|+|.+ |-.++.+|..    .|.       .+++|+++             
T Consensus       260 GTa~V~lAgllnAlki~gk~l~d~riv~~GAGaA-g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~  338 (555)
T 1gq2_A          260 GTASVAVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPE  338 (555)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTT
T ss_pred             hHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHH
Confidence            3334556788999999999999999999999998 9999999887    673       68999764             


Q ss_pred             ----------CCCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 ----------TKNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 ----------t~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                                ..+|.+.++  ++|++|-..+.|+.++++||+      +.-+|+=+. ||.
T Consensus       339 k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  398 (555)
T 1gq2_A          339 KEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  398 (555)
T ss_dssp             GGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                      125888888  599999998889999999885      566777766 443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.43  E-value=0.016  Score=55.28  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEI  282 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~  282 (375)
                      +||....++..|+..++ -.|++|+|+|+|. ||..+++++...|++|+.+.++                   ..++.+.
T Consensus       148 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  225 (340)
T 3s2e_A          148 ILCAGVTVYKGLKVTDT-RPGQWVVISGIGG-LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW  225 (340)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTSEEEEECCST-THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchhHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            45555556666755433 3699999999976 6999999999999998887543                   1233333


Q ss_pred             cc----CCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          283 TR----QADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       283 l~----~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                      ++    .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       226 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  266 (340)
T 3s2e_A          226 LQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP  266 (340)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC
Confidence            32    5799998888765432  24678888888888643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.43  E-value=0.016  Score=52.95  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .-||+|+|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3489999999998899999999999999999998764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.43  E-value=0.021  Score=53.27  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3578999999999888899999999999999998875

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.43  E-value=0.027  Score=54.77  Aligned_cols=39  Identities=21%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~   79 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTA   79 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999999988889999999999999999987654

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.41  E-value=0.12  Score=51.24  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=109.2

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          127 DSATYVRNKKKACQSVGINSFEVHLPEDTS---EQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       127 aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs---~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|..---+=..++.++|.++.++.-. +.+   -|-+.+.++-|..-  +++|.+--|-     . ..++.+.-  -. +
T Consensus        77 ~STRTR~SFE~A~~~LGg~vi~l~~~-~ss~~kgEsl~DTarvLs~~--~D~IviR~~~-----~-~~~~~lA~--~s-~  144 (359)
T 2w37_A           77 SSTRTRSAFTTASIDLGAHPEYLGQN-DIQLGKKESTSDTAKVLGSM--FDGIEFRGFK-----Q-SDAEILAR--DS-G  144 (359)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTT-TCCTTTSSCHHHHHHHHHHH--CSEEEEESSC-----H-HHHHHHHH--HS-S
T ss_pred             CCccHHHHHHHHHHHcCCeEEEeCCc-cccCCCCcCHHHHHHHHHHh--cCEEEEecCC-----h-HHHHHHHH--hC-C
Confidence            35444445678899999999888532 211   13455555555543  5788888662     2 22222221  11 2


Q ss_pred             cccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      +-.+|.|       .+.+.||=+.+= +.+.|+.| .++|++++++|-+ +-|.+.++..|...|++|+++.-.      
T Consensus       145 vPVINa~-------~~~~HPtQaLaDl~Ti~E~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~  216 (359)
T 2w37_A          145 VPVWNGL-------TDEWHPTQMLADFMTVKENFG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTE  216 (359)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCccHHHHHHHHHHHHhC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCH
Confidence            4455632       245679988874 55555554 8999999999996 557999999999999999998522      


Q ss_pred             -------------------CCCHHhhccCCcEEEEcc----CCC-----------CcccCCCc---C---CCcEEEEee
Q 017184          276 -------------------TKNPEEITRQADIIISAV----GQP-----------NMVRGSWI---K---PGAVIIDVG  314 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsAv----G~p-----------~~I~~~~v---k---~gavVIDvg  314 (375)
                                         +.++++.++.||+|.+-.    |..           .-|+.+.+   +   +++++.=++
T Consensus       217 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          217 ETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             HHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence                               356778899999999743    432           12555544   5   778887776

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=95.40  E-value=0.015  Score=52.50  Aligned_cols=37  Identities=30%  Similarity=0.307  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~   38 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATS   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999988765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.40  E-value=0.013  Score=56.76  Aligned_cols=91  Identities=16%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhc---
Q 017184          226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEIT---  283 (375)
Q Consensus       226 ~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l---  283 (375)
                      +..++..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.+.+   
T Consensus       148 ~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~  227 (362)
T 2c0c_A          148 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQE  227 (362)
T ss_dssp             HHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHh
Confidence            334445554443234699999999766679999999999999988876541                   2232222   


Q ss_pred             --cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 --RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                        ..+|+||.++|...+ ---+.++++-.++.+|..
T Consensus       228 ~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          228 YPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             CTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence              247999999886322 112456777788888864

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.40  E-value=0.15  Score=49.07  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=103.7

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc
Q 017184          120 ILVGDRKDSATYVRNKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM  197 (375)
Q Consensus       120 I~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p  197 (375)
                      .++-+  .|..---+=..++.++|.++.++.-...  ..-|-+.+.++-|+.- .+|+|.+--|-...+.+. +.+..  
T Consensus        39 ~lF~e--~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~~D~iviR~~~~~~~~~~-la~~~--  112 (291)
T 3d6n_B           39 LFFSE--PSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGL-GFDYVVFRVPFVFFPYKE-IVKSL--  112 (291)
T ss_dssp             EEESS--CCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHT-TCSEEEEEESSCCCSCHH-HHHTC--
T ss_pred             EEecC--CCccHHHHHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHh-cCCEEEEEcCChHHHHHH-HHHhC--
Confidence            44443  3444444567889999999988863211  1123466666666652 248999988755433221 32222  


Q ss_pred             ccccCccccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcC--CcccHHHHHHHHhhCCCeEEEEcC
Q 017184          198 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGR--SNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       198 ~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGr--s~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                        +   +-.+|.|      ..+...||-+.+= +.+.|+. .+++|++++++|-  ++-|.+.++..|...|++|+++.-
T Consensus       113 --~---vPVINAG------~g~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P  180 (291)
T 3d6n_B          113 --N---LRLVNAG------DGTHQHPSQGLIDFFTIKEHF-GEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGP  180 (291)
T ss_dssp             --S---SEEEEEE------ETTTBCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESC
T ss_pred             --C---CCEEeCc------cCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECC
Confidence              1   2334532      1345679988874 4444444 4799999999998  666799999999999999999853


Q ss_pred             C--------------CCCHHhhccCCcEEEEccC
Q 017184          275 R--------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       275 ~--------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      .              +.++++.+++||+|.+ +-
T Consensus       181 ~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          181 KTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             GGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             chhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            2              4578899999999998 54

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=95.39  E-value=0.011  Score=62.03  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh----CCC-------eEEEEcCC----------------
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR----EDA-------TVSIVHSR----------------  275 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~----~gA-------tVtv~hs~----------------  275 (375)
                      -+|-.|++..|+-.+.+++.-++|+.|+|.+ |-.++.+|..    .|.       .+++|+++                
T Consensus       301 ~V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~  379 (605)
T 1o0s_A          301 SVIVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ  379 (605)
T ss_dssp             HHHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTT
T ss_pred             HHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHH
Confidence            3455788999999999999999999999998 9999999988    784       58999764                


Q ss_pred             -------CCCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 -------TKNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 -------t~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                             ..+|.+.++  ++|++|-..+.|+.++++||+      +.-+|+=+. ||.
T Consensus       380 ~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  436 (605)
T 1o0s_A          380 FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  436 (605)
T ss_dssp             TCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                   125888888  599999998889999999885      566777666 443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.39  E-value=0.012  Score=54.78  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCcc--cHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~--VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .++||.|+|.|+++.  +|+.++..|+++|++|+++.++.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            578999999997643  79999999999999999987654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.38  E-value=0.021  Score=52.83  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|++  +-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999986  5569999999999999999987654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.37  E-value=0.027  Score=50.22  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=43.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------C------HHhhcc----CCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------N------PEEITR----QADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------~------L~~~l~----~ADIVIsAvG~p  296 (375)
                      |+|+|.|+++-+|+.++..|+++|++|+++.|+..        |      +++.++    ..|+||..+|..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence            68999999888999999999999999999887642        1      223333    789999988854

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.37  E-value=0.013  Score=49.17  Aligned_cols=53  Identities=15%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------C---HHh-hccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------N---PEE-ITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~---L~~-~l~~ADIVIsAvG~p  296 (375)
                      ++++|+|.|.+ |+.++..|.+.|..|+++.++..                  +   |++ .+.+||+||.+++..
T Consensus         8 ~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~   82 (140)
T 3fwz_A            8 NHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG   82 (140)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence            47999999885 99999999999999999976521                  1   222 257899999999864

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.35  E-value=0.03  Score=51.75  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC--------------------HHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--------------------PEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~--------------------L~~~l~~ADIVIsAvG~p  296 (375)
                      |+|+|.|+++-+|+.++..|+++|++|+++.+....                    +.+.++. |+||..+|.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            579999999989999999999999999998764321                    2333444 9999888854

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.35  E-value=0.021  Score=54.21  Aligned_cols=58  Identities=16%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCCC--------------------HHhhcc-----CCcEEEEc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTKN--------------------PEEITR-----QADIIISA  292 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~~--------------------L~~~l~-----~ADIVIsA  292 (375)
                      ++++|+|+|.|+++-+|+.++..|+++| ++|+++.+....                    +++.++     ..|+||.+
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            3678999999999999999999999999 899998765321                    223344     58999988


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      +|..
T Consensus       123 A~~~  126 (357)
T 2x6t_A          123 GACS  126 (357)
T ss_dssp             CSCC
T ss_pred             Cccc
Confidence            8853

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.34  E-value=0.015  Score=55.88  Aligned_cols=93  Identities=23%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-------------------CCHH--
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-------------------KNPE--  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-------------------~~L~--  280 (375)
                      |+....++..++..++ -.|.+|+|+|.|. ||..+++++...|+ +|+.+.+..                   .++.  
T Consensus       149 ~~~~~ta~~al~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  226 (352)
T 3fpc_A          149 PDMMTTGFHGAELANI-KLGDTVCVIGIGP-VGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQ  226 (352)
T ss_dssp             TTHHHHHHHHHHHTTC-CTTCCEEEECCSH-HHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHH
T ss_pred             cchhHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHH
Confidence            4433334455555544 3589999999865 69999999989999 788876542                   2222  


Q ss_pred             --hhcc--CCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          281 --EITR--QADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       281 --~~l~--~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                        +.+.  .+|+||.++|.+..+.  -++++++-.++.+|...
T Consensus       227 v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          227 ILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             HHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccC
Confidence              2222  4899999999876543  35788888899998653

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.34  E-value=0.021  Score=52.25  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=44.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC------HHhhcc--CCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------PEEITR--QADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~------L~~~l~--~ADIVIsAvG~p~  297 (375)
                      +|+|.|+++-+|+.++..|+++|++|+.+.|..-|      +.+.++  ..|+||..+|...
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~   68 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTK   68 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCcccC
Confidence            89999998889999999999999999999876543      344555  5899999888543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.33  E-value=0.018  Score=56.00  Aligned_cols=78  Identities=13%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC------------------CCCHHhhc-----cCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------TKNPEEIT-----RQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~------------------t~~L~~~l-----~~ADIVIsAvG~p  296 (375)
                      -.|++|+|+|+++.||..+++++...|++|+...+.                  ..++.+.+     ..+|+||-++|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            579999999997778999999999999987665321                  22333222     2389999999986


Q ss_pred             Cccc--CCCc-CCCcEEEEeeecC
Q 017184          297 NMVR--GSWI-KPGAVIIDVGINP  317 (375)
Q Consensus       297 ~~I~--~~~v-k~gavVIDvgin~  317 (375)
                      ..+.  -+.+ +++-.++.+|...
T Consensus       243 ~~~~~~~~~l~~~~G~iv~~g~~~  266 (371)
T 3gqv_A          243 ESTTFCFAAIGRAGGHYVSLNPFP  266 (371)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCC
T ss_pred             HHHHHHHHHhhcCCCEEEEEecCc
Confidence            5432  2456 5778888888543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.33  E-value=0.032  Score=50.41  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------C------HHhhccC----CcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------N------PEEITRQ----ADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------~------L~~~l~~----ADIVIsAvG~p  296 (375)
                      |+++|.|+++-+|+.++..|+++|++|+++.|+..        |      +++.+++    -|+||+.+|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            67999999998999999999999999999887642        1      2334444    49999998854

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.32  E-value=0.015  Score=54.11  Aligned_cols=39  Identities=28%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (270)
T 3ftp_A           23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATT   61 (270)
T ss_dssp             CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            346899999999998888999999999999999998765

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.32  E-value=0.015  Score=54.01  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   77 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   77 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCC
Confidence            46789999999999999999999999999999988654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.31  E-value=0.065  Score=51.05  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=52.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      .+++|||.|.+ |..++..|.+.|.+|+++.|..                           .+.++..+.+|+||.++..
T Consensus         3 mkI~IiGaGai-G~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAI-GSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHH-HHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            58999999885 9999999999999999987642                           1223333489999999986


Q ss_pred             CCc---cc--CCCcCCCcEEEEe
Q 017184          296 PNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       296 p~~---I~--~~~vk~gavVIDv  313 (375)
                      ..+   +.  ...++++.+||.+
T Consensus        82 ~~~~~~l~~l~~~l~~~t~Iv~~  104 (320)
T 3i83_A           82 VEGADRVGLLRDAVAPDTGIVLI  104 (320)
T ss_dssp             CTTCCHHHHHTTSCCTTCEEEEE
T ss_pred             CChHHHHHHHHhhcCCCCEEEEe
Confidence            543   11  2456778888876

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.30  E-value=0.018  Score=53.15  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~   50 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA   50 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            4689999999999988899999999999999998654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.29  E-value=0.014  Score=54.27  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   57 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD   57 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            579999999998888999999999999999998765

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.29  E-value=0.014  Score=55.14  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   59 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   59 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999998765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.29  E-value=0.019  Score=53.02  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------------------CHHhhccCCcEEEE
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------------------NPEEITRQADIIIS  291 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------------------~L~~~l~~ADIVIs  291 (375)
                      .|+|+|+|+++-+|+.++..|+++|++|+++.|...                              .+.+.++.+|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            578999999888899999999999999998876521                              13355677899998


Q ss_pred             ccCCC
Q 017184          292 AVGQP  296 (375)
Q Consensus       292 AvG~p  296 (375)
                      ++|..
T Consensus        84 ~a~~~   88 (308)
T 1qyc_A           84 TVGSL   88 (308)
T ss_dssp             CCCGG
T ss_pred             CCcch
Confidence            88754

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.28  E-value=0.032  Score=50.31  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~   36 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNP   36 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            78999999999999999999999999999987753

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.28  E-value=0.018  Score=55.19  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhC-CC-eEEEEcCCC----------------------C---CHHhhccCCcEEEE
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQRE-DA-TVSIVHSRT----------------------K---NPEEITRQADIIIS  291 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~-gA-tVtv~hs~t----------------------~---~L~~~l~~ADIVIs  291 (375)
                      .++||+|+|.|+++.+|+.++..|+++ |+ +|+++.|..                      .   .+.+.++..|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            468999999999998999999999999 97 999887641                      1   13456778899998


Q ss_pred             ccCCC
Q 017184          292 AVGQP  296 (375)
Q Consensus       292 AvG~p  296 (375)
                      ++|..
T Consensus        98 ~Aa~~  102 (344)
T 2gn4_A           98 AAALK  102 (344)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88854

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.28  E-value=0.026  Score=51.67  Aligned_cols=53  Identities=8%  Similarity=0.023  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhh----------------ccCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI----------------TRQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~----------------l~~ADIVIsAvG~  295 (375)
                      .++|+|.|+ +.+|+.++..|+++|.+|+.+.|+.......                +..+|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            378999998 6679999999999999999998765332211                6678999988874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.26  E-value=0.019  Score=54.56  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||.|+|.|+++-+|+.++..|+++|++|+++.++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999998888999999999999999998764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.26  E-value=0.015  Score=53.40  Aligned_cols=39  Identities=21%  Similarity=0.211  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999998899999999999999999998763

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.25  E-value=0.022  Score=55.14  Aligned_cols=96  Identities=24%  Similarity=0.252  Sum_probs=65.3

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHh
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEE  281 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~  281 (375)
                      .+||....++..|.+..---.|++|+|+|.| .||..+++++...|++|+++.+..                   .++.+
T Consensus       169 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G-~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  247 (363)
T 3uog_A          169 TLPCAGLTAWFALVEKGHLRAGDRVVVQGTG-GVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVE  247 (363)
T ss_dssp             TTTTHHHHHHHHHTTTTCCCTTCEEEEESSB-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHH
Confidence            3566655666666433333469999999965 569999999999999988875431                   23322


Q ss_pred             h----c--cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecC
Q 017184          282 I----T--RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       282 ~----l--~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~  317 (375)
                      .    +  +.+|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       248 ~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          248 RVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             HHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             HHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCC
Confidence            2    2  268999999994332 1235678888899998653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.23  E-value=0.021  Score=53.01  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   62 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   62 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999988665

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.22  E-value=0.016  Score=52.42  Aligned_cols=37  Identities=30%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||.++|.|+++-+|+.++..|++ |+.|+++.++.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~   38 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNP   38 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            46899999999999899999999987 88999887763

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.21  E-value=0.022  Score=53.46  Aligned_cols=60  Identities=15%  Similarity=0.326  Sum_probs=47.1

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCC-------CeEEEEcCCCC---------------C------HHhhc-cCCc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSRTK---------------N------PEEIT-RQAD  287 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~g-------AtVtv~hs~t~---------------~------L~~~l-~~AD  287 (375)
                      ++.++|++|+|.|+++-+|+.++..|+++|       ++|+++.+...               |      +.+.+ ...|
T Consensus         9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d   88 (342)
T 2hrz_A            9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPD   88 (342)
T ss_dssp             CSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCS
T ss_pred             CCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCC
Confidence            346789999999998889999999999999       78988866421               1      23445 4799


Q ss_pred             EEEEccCCC
Q 017184          288 IIISAVGQP  296 (375)
Q Consensus       288 IVIsAvG~p  296 (375)
                      +||..+|..
T Consensus        89 ~vih~A~~~   97 (342)
T 2hrz_A           89 VIFHLAAIV   97 (342)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999888854

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.21  E-value=0.021  Score=50.87  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~  275 (375)
                      +++|+++|.|+++-+|+.++..|+++|  ++|+++.|+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            368999999999999999999999999  999998765

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.21  E-value=0.034  Score=52.07  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------------C------HHhhcc--CCcEEE
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------------N------PEEITR--QADIII  290 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------------~------L~~~l~--~ADIVI  290 (375)
                      .+|+|+|.|+++-+|+.++..|+++|++|+++.+...                      |      +.+.++  ..|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            5789999999988999999999999999999876421                      1      233444  789999


Q ss_pred             EccCCC
Q 017184          291 SAVGQP  296 (375)
Q Consensus       291 sAvG~p  296 (375)
                      ..+|..
T Consensus        84 h~A~~~   89 (341)
T 3enk_A           84 HFAALK   89 (341)
T ss_dssp             ECCCCC
T ss_pred             ECcccc
Confidence            888754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.20  E-value=0.019  Score=51.62  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~   35 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLS   35 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            37899999999889999999999999999998765

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.20  E-value=0.15  Score=50.41  Aligned_cols=161  Identities=11%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhh
Q 017184          134 NKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG  210 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G  210 (375)
                      +=..++.++|.++.++.- .+.   .-|-+.+.++-|+.-  +|+|.+--|-     . ..++.+...-   ++-.+|.|
T Consensus        58 SFE~A~~~LGg~vi~l~~-~~ssl~kgEsl~DTarvLs~y--~D~IviR~~~-----~-~~~~~lA~~~---~vPVINag  125 (355)
T 4a8p_A           58 SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVER-----H-HSIVDLANCA---TIPVINGM  125 (355)
T ss_dssp             HHHHHHHHTTCEEEEECB-TTBCBTTTBCHHHHHHHHTTT--CSEEEEECSS-----H-HHHHHHHHHC---SSCEEECC
T ss_pred             hHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCc-----H-HHHHHHHHhC---CCCEEeCC
Confidence            556788999999987642 221   234588888888875  8899988662     2 2222222111   23345642


Q ss_pred             hcccCCCccccccCCHHHH-HHHHHHh--CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC------------
Q 017184          211 RLAMRGREPLFIPCTPKGC-IELLHRY--GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------  275 (375)
Q Consensus       211 ~l~~g~~~~~~~PcT~~gv-i~lL~~~--~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~------------  275 (375)
                             .+...||=+.+= +.+.|+.  |.+++|++|++||-++-|.+.++..|...|++|+++.-.            
T Consensus       126 -------~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~  198 (355)
T 4a8p_A          126 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  198 (355)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHH
Confidence                   245679977774 4455554  337999999999998889999999999999999998533            


Q ss_pred             -------------CCCHHhhccCCcEEEEcc----CC-------------CCc-ccCCCc---CCCcEEEEee
Q 017184          276 -------------TKNPEEITRQADIIISAV----GQ-------------PNM-VRGSWI---KPGAVIIDVG  314 (375)
Q Consensus       276 -------------t~~L~~~l~~ADIVIsAv----G~-------------p~~-I~~~~v---k~gavVIDvg  314 (375)
                                   +.|++ .+++||+|.+-+    |.             |.+ |+.+.+   +++++|.=++
T Consensus       199 ~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          199 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             HHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             HHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                         23556 789999999744    32             212 444443   6788887776

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.19  E-value=0.026  Score=52.69  Aligned_cols=55  Identities=15%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------------CHHhhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      .|+|+|+|+++-+|+.++..|+++|++|+++.|+..                         .+.+.++.+|+||.++|..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            368999999888899999999999999998876532                         1335567789999888753

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.19  E-value=0.024  Score=53.27  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCcc--cHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~--VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||.++|.|+++-  +|+.++..|+++|++|+++.++
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            589999999998754  7999999999999999998765

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.19  E-value=0.14  Score=50.69  Aligned_cols=142  Identities=15%  Similarity=0.131  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhh
Q 017184          134 NKKKACQSVGINSFEVHLPED--TSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGR  211 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~--vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~  211 (375)
                      +=..++.++|.++.++.-...  ..-|-+.+.++-|..-  +|+|.+--|  .   . ..++.+.-.-+|   -..| | 
T Consensus        87 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~--~---~-~~~~~la~~s~v---PVIN-G-  153 (358)
T 4h31_A           87 AFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRM--YDGIQYRGF--G---Q-AIVEELGAFAGV---PVWN-G-  153 (358)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHH--CSEEEEECS--C---H-HHHHHHHHHSSS---CEEE-S-
T ss_pred             HHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhcc--CceeEeccc--c---h-hHHHHhhhhccC---ceEC-C-
Confidence            456789999999876653211  1124466666666654  678888755  2   2 233333221122   1223 2 


Q ss_pred             cccCCCccccccCCHHHH-HHHHHHhC-CCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-------------
Q 017184          212 LAMRGREPLFIPCTPKGC-IELLHRYG-FDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-------------  275 (375)
Q Consensus       212 l~~g~~~~~~~PcT~~gv-i~lL~~~~-i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-------------  275 (375)
                          . .+...||=+.+= +.+.|+.+ ..++|++|++||-+ +-|.+.++.++...|++|++|.-.             
T Consensus       154 ----~-g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~  228 (358)
T 4h31_A          154 ----L-TDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQ  228 (358)
T ss_dssp             ----C-CSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHH
T ss_pred             ----C-CcCCCchHHHHHHHHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHH
Confidence                1 345678877763 45555554 47999999999964 347999999999999999998532             


Q ss_pred             ------------CCCHHhhccCCcEEEEcc
Q 017184          276 ------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 ------------t~~L~~~l~~ADIVIsAv  293 (375)
                                  +.|+.+.++.||+|.+-+
T Consensus       229 ~~~~~~g~~v~~~~d~~eav~~aDvvyt~~  258 (358)
T 4h31_A          229 AIAKQTGGKITLTENVAEGVQGCDFLYTDV  258 (358)
T ss_dssp             HHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHcCCcceeccCHHHHhccCcEEEEEE
Confidence                        357889999999998644

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.18  E-value=0.03  Score=53.71  Aligned_cols=53  Identities=26%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|||+|. ||.+++..|+..|. +|++++..                          |.++ +.+++||+||.++|.
T Consensus         3 ~kI~VIGaG~-vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence            5899999966 69999999999885 87777543                          1344 668999999999987


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        81 p~   82 (309)
T 1ur5_A           81 PR   82 (309)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=95.17  E-value=0.017  Score=53.68  Aligned_cols=36  Identities=22%  Similarity=0.197  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   37 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARR   37 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            578999999998888999999999999999998765

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.17  E-value=0.02  Score=53.78  Aligned_cols=38  Identities=32%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999987654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.17  E-value=0.023  Score=52.68  Aligned_cols=40  Identities=28%  Similarity=0.432  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+..
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            4689999999999998999999999999999999987653

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.16  E-value=0.16  Score=49.64  Aligned_cols=169  Identities=14%  Similarity=0.165  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-     ... ++.+.  +-. .+
T Consensus        57 STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~-----~~~-~~~lA--~~~-~v  124 (321)
T 1oth_A           57 STRTRLSTETGFALLGGHPCFLTTQ-DIHLGVNESLTDTARVLSSM--ADAVLARVYK-----QSD-LDTLA--KEA-SI  124 (321)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEETT-TSCBTTTBCHHHHHHHHHHH--CSEEEEECSC-----HHH-HHHHH--HHC-SS
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCC-cCcCCCCCCHHHHHHHHHHh--CCEEEEeCCC-----hhH-HHHHH--HhC-CC
Confidence            4333335577899999999887632 22   123455555555543  5788888662     222 22221  111 23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------  275 (375)
                      -.+|.|       .+...||=+.+= +.+.++. .+++|++|++||-++-|.+.++..|...|++|+++.-.        
T Consensus       125 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  196 (321)
T 1oth_A          125 PIINGL-------SDLYHPIQILADYLTLQEHY-SSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASV  196 (321)
T ss_dssp             CEEESC-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHH
T ss_pred             CEEcCC-------CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHH
Confidence            445632       245679988874 4555554 47999999999998878999999998999999998532        


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc----CCC-----------Cc-ccCCCc---CCCcEEEEeeec
Q 017184          276 -----------------TKNPEEITRQADIIISAV----GQP-----------NM-VRGSWI---KPGAVIIDVGIN  316 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv----G~p-----------~~-I~~~~v---k~gavVIDvgin  316 (375)
                                       +.|+++.++.||+|.+-+    |..           .+ |+.+.+   ++++++.=++-.
T Consensus       197 ~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP~  273 (321)
T 1oth_A          197 TKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR  273 (321)
T ss_dssp             HHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCC
T ss_pred             HHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCCC
Confidence                             346778899999999844    421           12 454433   678888877743

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.15  E-value=0.0096  Score=57.07  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=45.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC-CC-CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS-RT-KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs-~t-~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|.|+++-+|+.++..|+++|. +|+.+.+ .. .++.+.++++|+||.++|.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence            3799999999999999999999998 9999988 33 3567788899999988874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.15  E-value=0.012  Score=55.75  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH----hhc-
Q 017184          228 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE----EIT-  283 (375)
Q Consensus       228 gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~----~~l-  283 (375)
                      .++..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .+..    +.+ 
T Consensus       127 ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  206 (327)
T 1qor_A          127 TVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITG  206 (327)
T ss_dssp             HHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhC
Confidence            3445554332223699999999766679999999999999998876541                   1221    222 


Q ss_pred             -cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          284 -RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 -~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                       +..|+||.++| +..+.  -+.++++-.++.+|..
T Consensus       207 ~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          207 GKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             TCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecC
Confidence             24799999999 43332  2567888888898854

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.15  E-value=0.012  Score=56.19  Aligned_cols=57  Identities=21%  Similarity=0.324  Sum_probs=44.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhC-CCeEEEEcCCCC--------------------C---HHhhccCCcEEEEccC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRTK--------------------N---PEEITRQADIIISAVG  294 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVtv~hs~t~--------------------~---L~~~l~~ADIVIsAvG  294 (375)
                      .+.+|+|+|.|+++.+|+.++..|+++ |++|+++.|...                    +   +.+.++..|+||..++
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            357899999999999999999999998 899999877532                    1   2345667899998777


Q ss_pred             C
Q 017184          295 Q  295 (375)
Q Consensus       295 ~  295 (375)
                      .
T Consensus       101 ~  101 (372)
T 3slg_A          101 I  101 (372)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.13  E-value=0.024  Score=48.07  Aligned_cols=60  Identities=20%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC----------------------HHhh-ccCCcEEEEcc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN----------------------PEEI-TRQADIIISAV  293 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~----------------------L~~~-l~~ADIVIsAv  293 (375)
                      .....+++++|+|.|. +|+.++..|...|++|+++.++...                      +.+. +..+|+||.++
T Consensus        14 ~~~~~~~~v~IiG~G~-iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGR-LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             ---CCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             hcccCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            3567899999999977 5999999999999999998764211                      1111 45678888888


Q ss_pred             CCCC
Q 017184          294 GQPN  297 (375)
Q Consensus       294 G~p~  297 (375)
                      +.+.
T Consensus        93 ~~~~   96 (155)
T 2g1u_A           93 NDDS   96 (155)
T ss_dssp             SCHH
T ss_pred             CCcH
Confidence            7643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.13  E-value=0.009  Score=57.81  Aligned_cols=93  Identities=20%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH---
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE---  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~---  280 (375)
                      ||....++..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.   
T Consensus       152 ~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~  231 (351)
T 1yb5_A          152 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKI  231 (351)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHH
T ss_pred             hhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHH
Confidence            433344455554332223699999999966679999999999999988876531                   1222   


Q ss_pred             -hhc--cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          281 -EIT--RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       281 -~~l--~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                       +.+  +..|+||.++|.+.+- .-+.++++-.++.+|.
T Consensus       232 ~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          232 KKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             HHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEec
Confidence             222  2589999999865321 1245677778888884

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.13  E-value=0.021  Score=49.74  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCCC-----------CHHh--hccC--CcEEEEccCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRTK-----------NPEE--ITRQ--ADIIISAVGQP  296 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t~-----------~L~~--~l~~--ADIVIsAvG~p  296 (375)
                      .+|+|+|.|+++-+|+.++..|+++|+  +|+++.|+..           |+.+  .+.+  .|+||.++|..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhhhcEEEECeeec
Confidence            478999999999999999999999998  9998876532           2221  1222  79999888753

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.12  E-value=0.027  Score=53.33  Aligned_cols=36  Identities=33%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+|+|.|+++-+|+.++..|+++|++|+++.|.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   42 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   42 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999998764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.11  E-value=0.015  Score=54.29  Aligned_cols=38  Identities=24%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   49 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRD   49 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999999889999999999999999998775

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.09  E-value=0.01  Score=57.01  Aligned_cols=91  Identities=19%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHhCCCCCC-CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHHhhc
Q 017184          224 CTPKGCIELLHRYGFDIKG-KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPEEIT  283 (375)
Q Consensus       224 cT~~gvi~lL~~~~i~l~G-K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~~~l  283 (375)
                      |.+..++.+++..+  ..| +.++|.|.++.+|..+++++...||+|+.+.++.                   .++.+.+
T Consensus       148 ~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v  225 (349)
T 3pi7_A          148 VNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATL  225 (349)
T ss_dssp             HHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHH
T ss_pred             ccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHH
Confidence            33333344444444  345 7777776666679999999999999988876542                   2222222


Q ss_pred             ------cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          284 ------RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 ------~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                            +..|+||.++|.+.+- --+.++++-.++.+|..
T Consensus       226 ~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  265 (349)
T 3pi7_A          226 REVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRL  265 (349)
T ss_dssp             HHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCS
T ss_pred             HHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEecc
Confidence                  3689999999976431 12467888889999854

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.09  E-value=0.042  Score=50.85  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=43.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC--------HHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--------PEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~--------L~~~l~~ADIVIsAvG~  295 (375)
                      ||+|.|++|.+|+.++..|+++|.+|++..|+...        ..+.+..+|.||..+|.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence            69999999999999999999999999999876421        23567899999988774

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.08  E-value=0.029  Score=52.76  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++  -+|+.++..|+++|++|.++.++
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~   65 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS   65 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999973  45999999999999999998765

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.08  E-value=0.028  Score=53.98  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=52.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      +|+|||+|. +|.+++..|+..|.  +|+++.+.                          +.| .+.+++||+||.++|.
T Consensus         2 kI~ViGaG~-vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            699999966 59999999988886  78887543                          124 6788999999999996


Q ss_pred             CC---c-----c--cC----------CCcCCCcEEEEeeecCC
Q 017184          296 PN---M-----V--RG----------SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       296 p~---~-----I--~~----------~~vk~gavVIDvgin~~  318 (375)
                      |.   .     +  +.          .-..|.++++-++ ||.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs-NPv  121 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT-NPM  121 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS-SSH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC-Ccc
Confidence            63   1     1  00          1125678888887 775

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.08  E-value=0.021  Score=54.74  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH----hhc-
Q 017184          228 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE----EIT-  283 (375)
Q Consensus       228 gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~----~~l-  283 (375)
                      -++..|++..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.    +.+ 
T Consensus       153 ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          153 TAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             HHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhC
Confidence            3445554432223689999999966679999999999999988876531                   1222    222 


Q ss_pred             -cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          284 -RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       284 -~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                       +..|+||.++| +..+.  -+.++++-.++.+|...
T Consensus       233 ~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~~  268 (343)
T 2eih_A          233 GKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGASS  268 (343)
T ss_dssp             TTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCCC
T ss_pred             CCCceEEEECCC-HHHHHHHHHhhccCCEEEEEecCC
Confidence             25899999999 44432  24567777888888643

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.08  E-value=0.014  Score=52.70  Aligned_cols=34  Identities=38%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      .++||.++|.|+++-+|+.++..|+++|++|.+.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~   37 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIH   37 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            3689999999998888999999999999999885

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.06  E-value=0.12  Score=50.71  Aligned_cols=168  Identities=14%  Similarity=0.098  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.++.- .+.   .-|-+.+.++-|..-  +|+|.+--|-     .. .++.+.-.-   ++
T Consensus        55 STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~-----~~-~~~~lA~~~---~v  122 (333)
T 1duv_G           55 STRTRCSFEVAAYDQGARVTYLGP-SGSQIGHKESIKDTARVLGRM--YDGIQYRGYG-----QE-IVETLAEYA---SV  122 (333)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECS-SSSCBTTTBCHHHHHHHHTTT--CSEEEEECSC-----HH-HHHHHHHHH---SS
T ss_pred             CccHHHHHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHHh--CCEEEEEcCC-----ch-HHHHHHHhC---CC
Confidence            433333557789999999988753 221   124578888888775  7899988662     22 222222111   23


Q ss_pred             ccchhhhcccCCCccccccCCHHHH-HHHHHH-hCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC------
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKGC-IELLHR-YGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR------  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~gv-i~lL~~-~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~------  275 (375)
                      -.+|.|       .+.+.||=+.+= +.+.|+ .|.+++|+++++||-+ +-|++.++..+...|++|+++.-.      
T Consensus       123 PVINa~-------~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (333)
T 1duv_G          123 PVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEA  195 (333)
T ss_dssp             CEEESC-------CSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCH
T ss_pred             CeEcCC-------CCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            445631       346779988884 555555 4548999999999986 557999999999999999998522      


Q ss_pred             -------------------CCCHHhhccCCcEEEEcc----CC-------------CCcccCCCc----CCCcEEEEee
Q 017184          276 -------------------TKNPEEITRQADIIISAV----GQ-------------PNMVRGSWI----KPGAVIIDVG  314 (375)
Q Consensus       276 -------------------t~~L~~~l~~ADIVIsAv----G~-------------p~~I~~~~v----k~gavVIDvg  314 (375)
                                         +.|+++.++.||+|.+-+    |.             +.-|+.+.+    +|++++.=++
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          196 ALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             HHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence                               356778899999999733    32             112555544    6788887776

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.02  E-value=0.015  Score=53.65  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   41 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD   41 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999998888999999999999999998765

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.02  E-value=0.016  Score=52.16  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999998775

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.01  E-value=0.0099  Score=57.14  Aligned_cols=93  Identities=19%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             cCCHHHHHHHHHH-hCCCC-----CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------------CC
Q 017184          223 PCTPKGCIELLHR-YGFDI-----KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------------KN  278 (375)
Q Consensus       223 PcT~~gvi~lL~~-~~i~l-----~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------------~~  278 (375)
                      ||.....+..|.+ .++..     .|++|+|+|+++.+|..+++++...||+|+.+.++.                  .+
T Consensus       126 ~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~  205 (346)
T 3fbg_A          126 PLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKES  205 (346)
T ss_dssp             HHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSC
T ss_pred             chhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCcc
Confidence            4444444555533 33322     699999997666679999999999999999886642                  12


Q ss_pred             HHhhc-----cCCcEEEEccCCCCccc--CCCcCCCcEEEEeee
Q 017184          279 PEEIT-----RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGI  315 (375)
Q Consensus       279 L~~~l-----~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgi  315 (375)
                      +.+.+     +..|+||.++|.+..+.  -+.++++-.++.+|-
T Consensus       206 ~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          206 LLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             HHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSC
T ss_pred             HHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECC
Confidence            22222     24899999999765432  246778777777764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.01  E-value=0.04  Score=53.84  Aligned_cols=76  Identities=24%  Similarity=0.408  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC-------------------------CCCHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      ...++|.|||+|. ||..++..|+.+|.  +|.+++..                         +.+. +.+++|||||.+
T Consensus        17 ~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGA-VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            4678999999976 59999999998885  78887543                         1233 458999999999


Q ss_pred             cCCCC---cccCCC-----------------cCCCcEEEEeeecCC
Q 017184          293 VGQPN---MVRGSW-----------------IKPGAVIIDVGINPV  318 (375)
Q Consensus       293 vG~p~---~I~~~~-----------------vk~gavVIDvgin~~  318 (375)
                      +|.|.   .-..|.                 ..|.++++-++ ||.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt-NPv  139 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS-NPV  139 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS-SSH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-ChH
Confidence            99653   211121                 14678888877 764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.00  E-value=0.017  Score=56.19  Aligned_cols=86  Identities=20%  Similarity=0.357  Sum_probs=61.3

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHHhhcc-----
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPEEITR-----  284 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~~~l~-----  284 (375)
                      +..++..++ -.|++|+|+|+|. ||..+++++...|+ +|+++.+.                   ..++.+.++     
T Consensus       172 ~~~l~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          172 LHGVDLSGI-KAGSTVAILGGGV-IGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSS
T ss_pred             HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhc
Confidence            444555554 3589999999965 69999999999999 78777443                   234444443     


Q ss_pred             ---CCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          285 ---QADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       285 ---~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                         .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       250 ~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          250 VPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             STTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence               3899999999765432  24678888888898654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.00  E-value=0.019  Score=54.57  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~   78 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDL   78 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999988899999999999999998854

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.99  E-value=0.027  Score=54.76  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CCH
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KNP  279 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~L  279 (375)
                      +||.....+..+.+..---.|.+|+|+|+|. ||..+++++...|+ +|+.+.+..                     .++
T Consensus       174 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  252 (378)
T 3uko_A          174 LGCGVPTGLGAVWNTAKVEPGSNVAIFGLGT-VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPI  252 (378)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCCEEEECCSH-HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCH
T ss_pred             hhhhHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhH
Confidence            4554444454443332223699999999965 69999999999999 788876432                     122


Q ss_pred             Hhhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeeecC
Q 017184          280 EEITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGINP  317 (375)
Q Consensus       280 ~~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgin~  317 (375)
                      .+.++     .+|+||.++|.+..+.  -+.+++| -.++.+|...
T Consensus       253 ~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~  298 (378)
T 3uko_A          253 QEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA  298 (378)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccC
Confidence            22222     4899999999865432  3578886 8889999643

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.98  E-value=0.013  Score=56.46  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH----hhc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE----EIT  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~----~~l  283 (375)
                      ..++..|.+..---.|++|+|+|+++.+|..++.++...|++|+++.++.                   .+..    +.+
T Consensus       148 ~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFT  227 (354)
T ss_dssp             HHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHh
Confidence            33444453222223699999999766679999999999999988876531                   1221    222


Q ss_pred             --cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeeec
Q 017184          284 --RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgin  316 (375)
                        +..|+||.++|.+.+- --+.++++..++.+|..
T Consensus       228 ~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          228 KGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             TTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             cCCCceEEEECCCchHHHHHHHhccCCCEEEEEecc
Confidence              2589999999976331 12457888888888864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=94.97  E-value=0.017  Score=53.08  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998775

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.96  E-value=0.016  Score=55.29  Aligned_cols=90  Identities=14%  Similarity=0.024  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhc--
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEIT--  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l--  283 (375)
                      .-++..|.+..---.|++|+|+|+++.+|..++.++...|++|+++.++..                     ++.+.+  
T Consensus       141 ~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          141 MTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKR  220 (345)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHH
Confidence            334455533322236999999998666799999999999999888765311                     222222  


Q ss_pred             ---cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 ---RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 ---~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                         ...|+||.++|.+.+ -.-+.++++-.++.+|..
T Consensus       221 ~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          221 CFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             HCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCG
T ss_pred             HhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence               247888888886322 123567777788888864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.96  E-value=0.012  Score=53.01  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999998889999999999999999998765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.94  E-value=0.038  Score=53.48  Aligned_cols=94  Identities=18%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CCH
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KNP  279 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~L  279 (375)
                      +||.....+..+.+..---.|++|+|+|.|. ||..+++++...|+ +|+.+.+..                     .++
T Consensus       173 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  251 (374)
T 1cdo_A          173 LGCGVSTGFGAAVNTAKVEPGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPI  251 (374)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhH
Confidence            4554444444443322223689999999865 69999999999999 788775431                     123


Q ss_pred             Hhhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeeec
Q 017184          280 EEITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGIN  316 (375)
Q Consensus       280 ~~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgin  316 (375)
                      .+.++     .+|+||.++|.+..+.  -+.++++ -.++.+|..
T Consensus       252 ~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          252 SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             HHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence            33222     4899999999765432  3578888 788888864

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=94.93  E-value=0.023  Score=51.41  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   48 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   48 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcc
Confidence            57899999999999999999999999999999988743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.93  E-value=0.032  Score=53.99  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CCH
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KNP  279 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~L  279 (375)
                      +||.....+..+.+..---.|++|+|+|+|. ||..+++++...|+ +|+.+.+..                     .++
T Consensus       172 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  250 (374)
T 2jhf_A          172 IGCGFSTGYGSAVKVAKVTQGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPI  250 (374)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhH
Confidence            4554444444443332223699999999865 69999999999999 788775431                     123


Q ss_pred             Hhhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeeecC
Q 017184          280 EEITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGINP  317 (375)
Q Consensus       280 ~~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgin~  317 (375)
                      .+.++     .+|+||.++|.+..+.  -+.++++ -.++.+|...
T Consensus       251 ~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (374)
T 2jhf_A          251 QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP  296 (374)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence            22222     4899999999765432  2567888 7888888643

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=94.92  E-value=0.017  Score=60.23  Aligned_cols=94  Identities=15%  Similarity=0.231  Sum_probs=75.7

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh----CCC-------eEEEEcCC--------C-------
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR----EDA-------TVSIVHSR--------T-------  276 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~----~gA-------tVtv~hs~--------t-------  276 (375)
                      -+|-.|++..|+-.+.+++.-++|+.|+|.+ |-.++.+|..    .|.       .+++|+++        .       
T Consensus       265 ~V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~  343 (564)
T 1pj3_A          265 AVALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQE  343 (564)
T ss_dssp             HHHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTG
T ss_pred             HHHHHHHHHHHHHhCCcHhHcEEEEeCCCHH-HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHH
Confidence            3455788999999999999999999999998 9999999886    783       58998653        0       


Q ss_pred             -----------CCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          277 -----------KNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       277 -----------~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                                 .+|.+.++  ++|++|-..+.|+.++++||+      +.-+|+=+. ||.
T Consensus       344 ~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  403 (564)
T 1pj3_A          344 PFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  403 (564)
T ss_dssp             GGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                       35778888  699999988888999999885      466777666 443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.91  E-value=0.027  Score=55.21  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      ..++|.|||+|. ||.+++..|+..|.  +|.+++..                         +.++++ +++||+||.++
T Consensus        20 ~~~kV~ViGaG~-vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDA-VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTH-HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeC
Confidence            468999999966 59999999998885  78887643                         124444 89999999999


Q ss_pred             CCCC
Q 017184          294 GQPN  297 (375)
Q Consensus       294 G~p~  297 (375)
                      |.|.
T Consensus        98 G~p~  101 (330)
T 3ldh_A           98 GARQ  101 (330)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.90  E-value=0.013  Score=54.25  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357999999999998899999999999999999998763

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.90  E-value=0.047  Score=51.47  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +++|+|+|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.90  E-value=0.043  Score=53.09  Aligned_cols=94  Identities=17%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CCHH
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KNPE  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~L~  280 (375)
                      ||.....+..+.+..---.|++|+|+|+|. ||..+++++...|+ +|+.+.+..                     .++.
T Consensus       173 ~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  251 (373)
T 1p0f_A          173 GCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIY  251 (373)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHH
T ss_pred             hhHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHH
Confidence            443333344443322223699999999865 69999998888998 787775331                     1233


Q ss_pred             hhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeeecC
Q 017184          281 EITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGINP  317 (375)
Q Consensus       281 ~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgin~  317 (375)
                      +.++     .+|+||.++|.+..+.  -+.++++ -.++.+|...
T Consensus       252 ~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (373)
T 1p0f_A          252 EVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS  296 (373)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             HHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            2222     5899999999765432  3578888 8888888643

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.88  E-value=0.027  Score=54.07  Aligned_cols=71  Identities=17%  Similarity=0.324  Sum_probs=53.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------CCHHhhccCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      .+++.|||.|.+ |..++..|.+.|.+|+++.+..                          .+.++ +..+|+||.++..
T Consensus         3 ~mkI~IiGaG~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAV-GGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHH-HHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            368999999885 9999999999999999987631                          23333 5789999999986


Q ss_pred             CCc---cc--CCCcCCCcEEEEee
Q 017184          296 PNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       296 p~~---I~--~~~vk~gavVIDvg  314 (375)
                      +.+   +.  ...++++.+||.+-
T Consensus        81 ~~~~~~~~~l~~~l~~~~~iv~~~  104 (335)
T 3ghy_A           81 PALESVAAGIAPLIGPGTCVVVAM  104 (335)
T ss_dssp             HHHHHHHGGGSSSCCTTCEEEECC
T ss_pred             hhHHHHHHHHHhhCCCCCEEEEEC
Confidence            432   11  24577888998864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.88  E-value=0.05  Score=52.79  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------------CCHHhhccCCcEEEEcc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------------~~L~~~l~~ADIVIsAv  293 (375)
                      +.++|.|||+|. ||.+++..|+..+. +|++++...                          .+ .+.+++||+||.++
T Consensus         4 ~~~kI~iiGaG~-vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~a   81 (321)
T 3p7m_A            4 ARKKITLVGAGN-IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTA   81 (321)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcC
Confidence            457899999876 59999999998886 888875431                          12 46789999999999


Q ss_pred             CCC
Q 017184          294 GQP  296 (375)
Q Consensus       294 G~p  296 (375)
                      |.|
T Consensus        82 g~p   84 (321)
T 3p7m_A           82 GVP   84 (321)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            966

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.88  E-value=0.025  Score=51.62  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   35 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999889999999999999999998765

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.88  E-value=0.036  Score=51.47  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------C------HHhhccC--CcEEEEccCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------N------PEEITRQ--ADIIISAVGQP  296 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~------L~~~l~~--ADIVIsAvG~p  296 (375)
                      ..-+-|+|+|.|+++-+|+.++..|+++|++|+++.+...           |      +.+.++.  .|+||.++|..
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   85 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS   85 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence            3446789999999999999999999999999999876531           2      2334443  79999888853

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.87  E-value=0.033  Score=51.54  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------------CHHhhccCCcEEEEc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------------NPEEITRQADIIISA  292 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------------~L~~~l~~ADIVIsA  292 (375)
                      .++|+|+|+++-+|+.++..|+++|++|+++.|...                             .+.+.++.+|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            578999999888999999999999999998877521                             134566788999988


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      +|..
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            8753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.87  E-value=0.084  Score=50.66  Aligned_cols=120  Identities=16%  Similarity=0.061  Sum_probs=71.5

Q ss_pred             CCCEEEEEcCCcccHHH-HHHHHhhCCCeEEEEcCCCC-CHHhhccCCcEEEEccCCCCcccCCCcC---CCcEEEEeee
Q 017184          241 KGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTK-NPEEITRQADIIISAVGQPNMVRGSWIK---PGAVIIDVGI  315 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkp-la~lL~~~gAtVtv~hs~t~-~L~~~l~~ADIVIsAvG~p~~I~~~~vk---~gavVIDvgi  315 (375)
                      +.|++.|||-|++ |+. +|.+|+++|++|++++.+.. ...+.+++..|-|. .|.    .++++.   ...+|+--|+
T Consensus         3 ~~~~i~~iGiGg~-Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~-~g~----~~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            3 AMKHIHIIGIGGT-FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY-EGF----DAAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             CCCEEEEESCCSH-HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE-ESC----CGGGGGSCCCSEEEECTTC
T ss_pred             CCcEEEEEEECHH-HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE-CCC----CHHHcCCCCCCEEEECCCc
Confidence            3589999999998 995 99999999999999988643 23333433333222 121    112221   2345555555


Q ss_pred             cCCCCCC----CCCCceeecccchhh--hhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          316 NPVEDAK----SPRGYRLVGDVCYEE--ACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       316 n~~~~~~----~~~g~kl~GDVd~~~--v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      ++.. |.    ...|-++++++++-.  +.+ ...+--|-|-.|.-|+..|+.++++.+
T Consensus        77 ~~~~-p~~~~a~~~gi~v~~~~e~~~~~~~~-~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           77 KRGM-DVVEAILNLGLPYISGPQWLSENVLH-HHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             CTTC-HHHHHHHHTTCCEEEHHHHHHHHTGG-GSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCC-HHHHHHHHcCCcEEeHHHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            4421 00    012335778776411  111 111223558899999999999998765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.87  E-value=0.041  Score=52.62  Aligned_cols=51  Identities=27%  Similarity=0.474  Sum_probs=40.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCC--------------------------CCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRT--------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t--------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      +|+|||+|. +|.+++..|+..  +.+|+++.+..                          .++++ +++||+||.++|.
T Consensus         2 kI~VIGaG~-vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            799999966 599999999885  67899886542                          23434 7889999999987


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      |
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.86  E-value=0.012  Score=60.22  Aligned_cols=69  Identities=17%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------------------------CHHhhc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------------------------NPEEIT  283 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~l  283 (375)
                      -++|.|||.|.+ |.++|..|++.|.+|++++++..                                      ++ +.+
T Consensus         5 ~~kVgVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~   82 (483)
T 3mog_A            5 VQTVAVIGSGTM-GAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HAL   82 (483)
T ss_dssp             CCCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGG
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHh
Confidence            368999999885 99999999999999999976521                                      22 347


Q ss_pred             cCCcEEEEccCCCCcccC-------CCcCCCcEEEE
Q 017184          284 RQADIIISAVGQPNMVRG-------SWIKPGAVIID  312 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~~-------~~vk~gavVID  312 (375)
                      ++||+||.|++...-++.       +.+++++++++
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilas  118 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTT  118 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence            889999999975421211       24578888754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.86  E-value=0.041  Score=55.63  Aligned_cols=53  Identities=30%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             cccCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcC
Q 017184          221 FIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHS  274 (375)
Q Consensus       221 ~~PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs  274 (375)
                      ..+.|.+|++    +++++.+.+++||+|+|.|.|++ |..++.+|.+.|++|+ ++++
T Consensus       193 r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnV-G~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          193 RDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQV-GAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEEET
T ss_pred             CccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEcC
Confidence            3478989876    45566899999999999999885 9999999999999877 7776

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.86  E-value=0.036  Score=52.07  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +|+|+|.|+++-+|+.++..|+++|++|+++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            589999999888999999999999999998854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.84  E-value=0.015  Score=55.91  Aligned_cols=84  Identities=13%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHHhhc------
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPEEIT------  283 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~~~l------  283 (375)
                      +..++..++  .|++|+|+|+|. +|..+++++...|+ +|+.+.++                   ..++.+.+      
T Consensus       158 ~~~l~~~~~--~g~~VlV~GaG~-vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          158 VDTVLAGPI--SGKSVLITGAGP-LGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             HHHHTTSCC--TTCCEEEECCSH-HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred             HHHHHhcCC--CCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCC
Confidence            444544455  899999999955 69999999999999 88887543                   12333222      


Q ss_pred             cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          284 RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +.+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       235 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          235 NGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccC
Confidence            25899999999755432  2467888889999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.83  E-value=0.016  Score=53.65  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=34.5

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (281)
T 3svt_A            6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN   44 (281)
T ss_dssp             --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999999889999999999999999998765

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.82  E-value=0.051  Score=55.34  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCcccHHH-HHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCcccCCCcC-CCcEEEEeeecCC
Q 017184          241 KGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIK-PGAVIIDVGINPV  318 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkp-la~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~I~~~~vk-~gavVIDvgin~~  318 (375)
                      +.|++.|||-|++ |+. +|.+|+++|++|++++.+.....+.+++..|-|. .|.    .++.+. ...+|+--|+++.
T Consensus        21 ~~~~v~viGiG~s-G~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           21 RVRHIHFVGIGGA-GMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIY-FHH----RPENVLDASVVVVSTAISAD   94 (494)
T ss_dssp             -CCEEEEETTTST-THHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEE-SSC----CGGGGTTCSEEEECTTSCTT
T ss_pred             cCCEEEEEEEcHh-hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEE-CCC----CHHHcCCCCEEEECCCCCCC
Confidence            5699999999998 996 8999999999999998764333333333333222 121    111221 2344444444432


Q ss_pred             CCCC----CCCCceeecccchhh-hhhhcceeccCCCCccHHHHHHHHHHHHHHH
Q 017184          319 EDAK----SPRGYRLVGDVCYEE-ACEVASAITPVPGGVGPMTIAMLLSNTLTSA  368 (375)
Q Consensus       319 ~~~~----~~~g~kl~GDVd~~~-v~~~a~~iTPVPGGVGp~T~amLl~N~v~a~  368 (375)
                      . |.    ...|-.+++++++-. ..+. ..+--|-|--|.-|+..|+.++++.+
T Consensus        95 ~-p~~~~a~~~gi~v~~~~e~l~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~  147 (494)
T 4hv4_A           95 N-PEIVAAREARIPVIRRAEMLAELMRY-RHGIAVAGTHGKTTTTAMLSSIYAEA  147 (494)
T ss_dssp             C-HHHHHHHHTTCCEEEHHHHHHHHHTT-SEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             C-HHHHHHHHCCCCEEcHHHHHHHHhcC-CCEEEEecCCChHHHHHHHHHHHHhc
Confidence            1 00    002335777776421 1111 11223558899999999999998765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.82  E-value=0.04  Score=53.38  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KN  278 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~  278 (375)
                      .+||.....+..+.+..---.|++|+|+|.|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       175 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  253 (376)
T 1e3i_A          175 LIGCGFSSGYGAAINTAKVTPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKP  253 (376)
T ss_dssp             GGGTHHHHHHHHHHTTSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccch
Confidence            34554444444443322223699999999865 69999999999999 787775431                     12


Q ss_pred             HHhhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeee
Q 017184          279 PEEITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGI  315 (375)
Q Consensus       279 L~~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgi  315 (375)
                      +.+.++     .+|+||.++|.+..+.  -++++++ -.++-+|.
T Consensus       254 ~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          254 VQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            322222     4899999999765432  2577888 78888886

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.82  E-value=0.033  Score=53.01  Aligned_cols=53  Identities=23%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|||+|. +|.+++..|+..|  .+|++++++.                         .++ +.+++||+||.+++.
T Consensus         2 ~kI~VIGaG~-~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            4799999877 5999999999888  6899886542                         233 456789999999997


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=94.81  E-value=0.026  Score=51.57  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (258)
T 3a28_C            1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLP   35 (258)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            37999999999889999999999999999998664

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=94.81  E-value=0.044  Score=52.80  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------  277 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------  277 (375)
                      .+||.+..++..|.+..---.|.+|+|+|+++.||..+++++...||+|+++-+..+                       
T Consensus       147 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~  226 (357)
T 1zsy_A          147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEEL  226 (357)
T ss_dssp             HTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHH
T ss_pred             hhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcc
Confidence            345555555666655433346999999999666899999988889997655432211                       


Q ss_pred             ---CHHhhcc---CCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          278 ---NPEEITR---QADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       278 ---~L~~~l~---~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                         ++.+.+.   .+|+||.++|.+... .-+.++++-.++.+|.
T Consensus       227 ~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          227 RRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             HSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCC
T ss_pred             hHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEec
Confidence               1111222   378888888865432 2356788878888874

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=94.80  E-value=0.028  Score=51.01  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +.||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999998888999999999999999887553

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=94.80  E-value=0.23  Score=49.35  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEe-----CCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccC
Q 017184          128 SATYVRNKKKACQSVGINSFEVH-----LPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD  202 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~-----l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVD  202 (375)
                      |..---+=..++.++|.++.++.     +...   |-+.+.++-|..-  +|+|.+--|-     . ..++.+...-   
T Consensus        82 STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kg---Esl~DTarvLs~~--~D~IviR~~~-----~-~~~~~lA~~s---  147 (365)
T 4amu_A           82 STRTRCAFEVAASDLGAGVTYIGPSGSNMGKK---ESIEDTAKVLGRF--YDGIEFRGFA-----Q-SDVDALVKYS---  147 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECHHHHCCSSS---SCHHHHHHHHHHH--CSEEEEECSC-----H-HHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHhCCCEEEEcCCccccCCCC---cCHHHHHHHHHhh--CcEEEEecCC-----h-hHHHHHHHhC---
Confidence            44333355678899999998763     2222   3355555555543  6799887652     2 2222222111   


Q ss_pred             ccccchhhhcccCCCccccccCCHHH-HHHHHHHhCCCCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-----
Q 017184          203 GFHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGFDIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-----  275 (375)
Q Consensus       203 Gl~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-----  275 (375)
                      ++-.+|.|       .+.+.||=+.+ ++.+.|+.| .++|++|++||-+ +-|.+.++.++...|++|+++.-.     
T Consensus       148 ~vPVINa~-------~~~~HPtQaLaDl~Ti~E~~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~  219 (365)
T 4amu_A          148 GVPVWNGL-------TDDEHPTQIIADFMTMKEKFG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNE  219 (365)
T ss_dssp             CSCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGG
T ss_pred             CCCEEeCC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCC
Confidence            23345642       23567997777 455555555 6999999999987 557999999999999999998421     


Q ss_pred             ----------------------CCCHHhhccCCcEEEEcc----CCC-------------CcccCCCc---CCCcEEEEe
Q 017184          276 ----------------------TKNPEEITRQADIIISAV----GQP-------------NMVRGSWI---KPGAVIIDV  313 (375)
Q Consensus       276 ----------------------t~~L~~~l~~ADIVIsAv----G~p-------------~~I~~~~v---k~gavVIDv  313 (375)
                                            +.|+++.++.||+|.+-+    |.+             .-|+.+.+   ++++++.=+
T Consensus       220 ~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHc  299 (365)
T 4amu_A          220 IDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHC  299 (365)
T ss_dssp             SCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEEC
T ss_pred             CcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECC
Confidence                                  246678899999999743    432             12565544   678888777


Q ss_pred             e
Q 017184          314 G  314 (375)
Q Consensus       314 g  314 (375)
                      +
T Consensus       300 L  300 (365)
T 4amu_A          300 L  300 (365)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.79  E-value=0.047  Score=52.90  Aligned_cols=57  Identities=26%  Similarity=0.393  Sum_probs=44.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC--C-------------------------CCHHhhccCCcEEEE
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR--T-------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~--t-------------------------~~L~~~l~~ADIVIs  291 (375)
                      .+.++|.|||+|. +|.+++..|+..|. +|+++.+.  .                         .+-.+.+++||+||.
T Consensus         6 ~~~~kv~ViGaG~-vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIi   84 (315)
T 3tl2_A            6 IKRKKVSVIGAGF-TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVI   84 (315)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEE
Confidence            3568999999966 59999999999998 89988665  1                         011366899999999


Q ss_pred             ccCCCC
Q 017184          292 AVGQPN  297 (375)
Q Consensus       292 AvG~p~  297 (375)
                      ++|.|.
T Consensus        85 aag~p~   90 (315)
T 3tl2_A           85 TAGIAR   90 (315)
T ss_dssp             CCSCCC
T ss_pred             eCCCCC
Confidence            999653

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.79  E-value=0.039  Score=51.79  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+|+|.|+++-+|+.++..|+++|++|+.+.|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   38 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999999999989999999999999999876543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.78  E-value=0.018  Score=53.72  Aligned_cols=64  Identities=14%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhccCCcEEEEccCCCCc---cc--CCCcCCCcEEEEee
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNM---VR--GSWIKPGAVIIDVG  314 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l~~ADIVIsAvG~p~~---I~--~~~vk~gavVIDvg  314 (375)
                      .+|.|||.|.+ |.+++..|.+.|.+|+.+++.     +.+++||  |.+++...+   +.  ...+++|++|+|+.
T Consensus         7 mkI~IIG~G~~-G~sLA~~L~~~G~~V~~~~~~-----~~~~~aD--ilavP~~ai~~vl~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A            7 LRVGIFDDGSS-TVNMAEKLDSVGHYVTVLHAP-----EDIRDFE--LVVIDAHGVEGYVEKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             CEEEEECCSCC-CSCHHHHHHHTTCEEEECSSG-----GGGGGCS--EEEECSSCHHHHHHHHHTTCCTTCEEEECC
T ss_pred             cEEEEEeeCHH-HHHHHHHHHHCCCEEEEecCH-----HHhccCC--EEEEcHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            58999999886 999999999999999988773     2368899  555554332   21  13678999999974

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.78  E-value=0.02  Score=52.31  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5799999999998888999999999999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.76  E-value=0.019  Score=55.46  Aligned_cols=70  Identities=20%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------------------------CCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                            .++.+.++++|+||.+++.
T Consensus        17 kI~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence            7999999885 9999999999999999987642                            2344567889999999974


Q ss_pred             CC---cccC------CCcCC-CcEEEEee
Q 017184          296 PN---MVRG------SWIKP-GAVIIDVG  314 (375)
Q Consensus       296 p~---~I~~------~~vk~-gavVIDvg  314 (375)
                      ..   .+..      ..+++ +.+|||+.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~  124 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCT  124 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEEC
Confidence            22   1221      23567 88999985

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.75  E-value=0.02  Score=55.01  Aligned_cols=90  Identities=20%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhCCCCCC--CEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------CCHHhhc
Q 017184          227 KGCIELLHRYGFDIKG--KRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------KNPEEIT  283 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~G--K~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------~~L~~~l  283 (375)
                      ..++..|.+..---.|  ++|+|.|+++.+|..+++++...|+ +|+++.++.                    .++.+.+
T Consensus       144 ~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~  223 (357)
T 2zb4_A          144 LTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQL  223 (357)
T ss_dssp             HHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence            3445555333222358  9999999966679999999999999 998876542                    1221111


Q ss_pred             ----c-CCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          284 ----R-QADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       284 ----~-~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                          . ..|+||.++|...+ ---+.++++-.++.+|..
T Consensus       224 ~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          224 RESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             HHHCTTCEEEEEESCCHHHHHHHHHTEEEEEEEEECCCG
T ss_pred             HHhcCCCCCEEEECCCHHHHHHHHHHhccCcEEEEECCc
Confidence                1 37888888885221 112466777778888854

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.75  E-value=0.04  Score=56.45  Aligned_cols=85  Identities=27%  Similarity=0.454  Sum_probs=63.5

Q ss_pred             HHHHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC---------CCCHHhhccCCcEEE
Q 017184          229 CIELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR---------TKNPEEITRQADIII  290 (375)
Q Consensus       229 vi~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~---------t~~L~~~l~~ADIVI  290 (375)
                      +.+.|...+.+++||+|.|+|-+         +.-...++..|.++|++|.+..-.         ..++++.++.||.||
T Consensus       340 i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vv  419 (478)
T 3g79_A          340 TVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIV  419 (478)
T ss_dssp             HHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEE
T ss_pred             HHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEE
Confidence            44445555678999999999943         223678899999999999998533         246788899999999


Q ss_pred             EccCCCCcc--cCCCc----C-CCcEEEEe
Q 017184          291 SAVGQPNMV--RGSWI----K-PGAVIIDV  313 (375)
Q Consensus       291 sAvG~p~~I--~~~~v----k-~gavVIDv  313 (375)
                      .+|..+.|-  +.+.+    + ++.+|+|.
T Consensus       420 i~t~~~~f~~~d~~~~~~~~~~~~~~i~D~  449 (478)
T 3g79_A          420 VLAGHSAYSSLKADWAKKVSAKANPVIIDG  449 (478)
T ss_dssp             ECSCCHHHHSCCHHHHHHHHCCSSCEEEES
T ss_pred             EecCCHHHHhhhHHHHHHHhccCCCEEEEC
Confidence            999988773  33333    3 36799994

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=94.72  E-value=0.016  Score=53.41  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE-cCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIV-HSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~-hs~  275 (375)
                      +||+++|.|+++-+|+.++..|+++|++|.++ .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999998888999999999999999886 544

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=94.72  E-value=0.59  Score=45.70  Aligned_cols=169  Identities=11%  Similarity=0.092  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCcc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDT---SEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF  204 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~v---s~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl  204 (375)
                      |..---+=..++.++|.++.+..|..+.   .-|-+.+.++-|+.-  +|+|.+--|-  |    ..++.+...-+   +
T Consensus        55 STRTR~SFE~A~~~LGg~~i~~~l~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~--~----~~~~~lA~~~~---v  123 (328)
T 3grf_A           55 SLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRM--VDICTARLAT--K----EMMREMAQHAS---V  123 (328)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEEC----------CHHHHHHHHTTT--CSEEEEECSS--H----HHHHHHHHHCS---S
T ss_pred             CchHHHHHHHHHHHCCCeEEccccCccccCCCCCCHHHHHHHHHhh--CCEEEEecCC--h----hHHHHHHHhCC---C
Confidence            4444445577889999999885554311   124577888888774  7899998662  1    22222211112   2


Q ss_pred             ccchhhhcccCCCccccccCCHHH-HHHHHHHhCC------CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-
Q 017184          205 HPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGF------DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-  275 (375)
Q Consensus       205 ~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i------~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-  275 (375)
                      -.+|.|       .+...||=+.+ ++.+.|+.|.      +++|+++++||-+ +-|.+.++..|...|++|+++.-. 
T Consensus       124 PVINag-------~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~  196 (328)
T 3grf_A          124 PCINAL-------DDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDH  196 (328)
T ss_dssp             CEEESS-------CSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred             CEEeCC-------CCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChH
Confidence            344542       23567997777 4566666652      7999999999987 668999999999999999998422 


Q ss_pred             ----------------------------CCCHHhhccCCcEEEEc----cC-CC-----------Cc-ccCCCc---CCC
Q 017184          276 ----------------------------TKNPEEITRQADIIISA----VG-QP-----------NM-VRGSWI---KPG  307 (375)
Q Consensus       276 ----------------------------t~~L~~~l~~ADIVIsA----vG-~p-----------~~-I~~~~v---k~g  307 (375)
                                                  +.|+++.++.||+|.+.    .| ..           .+ |+.+.+   +++
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~  276 (328)
T 3grf_A          197 KDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKR  276 (328)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTT
T ss_pred             hhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCC
Confidence                                        13667789999999975    35 11           12 555433   578


Q ss_pred             cEEEEee
Q 017184          308 AVIIDVG  314 (375)
Q Consensus       308 avVIDvg  314 (375)
                      +++.=++
T Consensus       277 ai~mH~l  283 (328)
T 3grf_A          277 SIFMNCL  283 (328)
T ss_dssp             CEEEECS
T ss_pred             CEEECCC
Confidence            8887766

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.72  E-value=0.04  Score=53.25  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=62.9

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------KN  278 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~~  278 (375)
                      .+||.....+..+.+..---.|++|+|+|+|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       170 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  248 (373)
T 2fzw_A          170 LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGG-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKP  248 (373)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccccc
Confidence            34554344444443322223699999999865 69999999988999 787775431                     12


Q ss_pred             HHhhcc-----CCcEEEEccCCCCccc--CCCcCCC-cEEEEeeecC
Q 017184          279 PEEITR-----QADIIISAVGQPNMVR--GSWIKPG-AVIIDVGINP  317 (375)
Q Consensus       279 L~~~l~-----~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgin~  317 (375)
                      +.+.++     .+|+||.++|.+..+.  -++++++ -.++.+|...
T Consensus       249 ~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  295 (373)
T 2fzw_A          249 IQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA  295 (373)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCC
Confidence            322222     4899999999765432  3578888 8888898643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.72  E-value=0.034  Score=50.78  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEcCCcc--cHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~--VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++.  +|+.++..|+++|++|+++.+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            4689999999999855  7999999999999999988654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.72  E-value=0.05  Score=50.24  Aligned_cols=53  Identities=21%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCCC-----------------------HHhhccCCcEEEEccC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTKN-----------------------PEEITRQADIIISAVG  294 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~~-----------------------L~~~l~~ADIVIsAvG  294 (375)
                      +|+|+|.|+++-+|+.++..|+++| ++|+.+.|+...                       +.+.++.+|+||..+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            5899999998889999999999988 899988765321                       3345677888887776

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=94.72  E-value=0.05  Score=54.88  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=44.9

Q ss_pred             ccccCCHHHHHHH----HHHhCCC-CCCCEEEEEcCCcccHHHHHHHHhh-CCCeEEEEc
Q 017184          220 LFIPCTPKGCIEL----LHRYGFD-IKGKRAVVIGRSNIVGMPAALLLQR-EDATVSIVH  273 (375)
Q Consensus       220 ~~~PcT~~gvi~l----L~~~~i~-l~GK~vvVIGrs~~VGkpla~lL~~-~gAtVtv~h  273 (375)
                      +..++|++|++..    +++.+.+ ++||++.|+|.|++ |+.++.+|.. .|++|+.+.
T Consensus       185 ~~~~aTg~Gv~~~~~~~~~~~G~~~l~gktvgI~G~G~V-G~~vA~~l~~~~G~kVv~~s  243 (419)
T 1gtm_A          185 GRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNA-GYYLAKIMSEDFGMKVVAVS  243 (419)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCcccCCCEEEEEcCCHH-HHHHHHHHHHhcCCEEEEEe
Confidence            4457999997654    5567999 99999999999995 9999999999 999988663

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.72  E-value=0.025  Score=51.52  Aligned_cols=60  Identities=15%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC----------------HHhhc-------cCCcEEEEcc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN----------------PEEIT-------RQADIIISAV  293 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~----------------L~~~l-------~~ADIVIsAv  293 (375)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.|+...                +++.+       ..-|+||+.+
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~A   89 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA   89 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            346889999999999889999999999999999998775321                11222       2569999888


Q ss_pred             CCC
Q 017184          294 GQP  296 (375)
Q Consensus       294 G~p  296 (375)
                      |..
T Consensus        90 g~~   92 (247)
T 1uzm_A           90 GLS   92 (247)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            853

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.69  E-value=0.022  Score=51.88  Aligned_cols=55  Identities=20%  Similarity=0.160  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------CHHhhccCCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------NPEEITRQADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------~L~~~l~~ADIVIsAvG~p  296 (375)
                      +|+++|.|+++-+|+.++..|+++|++|+++.|+..                  .+.+.++..|+||.++|..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   74 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVS   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcCC
Confidence            378999999888999999999999999998876531                  1345678899999888753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.68  E-value=0.022  Score=52.69  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   54 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   54 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999999999989999999999999999998765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.68  E-value=0.022  Score=52.33  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------C------HHhhccC-CcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------N------PEEITRQ-ADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------~------L~~~l~~-ADIVIsAvG  294 (375)
                      ++++|+|.|+ +.+|+.++..|+++|.+|+++.|+..           |      +.+.++. .|+||..+|
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4689999996 56799999999999999999877632           1      2344444 899998776

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=94.66  E-value=0.026  Score=53.02  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++|+||.++|-|++.=+|+.++..|+++||+|.++.++.
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            589999999999988889999999999999999998764

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.66  E-value=0.027  Score=51.19  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            47899999999999999999999999999999987764

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.65  E-value=0.029  Score=56.05  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+|.|||.|++ |+..+.+|.++|++|+.++++.
T Consensus         2 ~~~~~~v~viG~G~~-G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHH-HHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHH-HHHHHHHHHhCCCEEEEEECCC
Confidence            468999999999997 9999999999999999998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.65  E-value=0.039  Score=54.10  Aligned_cols=34  Identities=18%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHS  274 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs  274 (375)
                      +++++|+|||.|++ |.+++..|...|. ++++++.
T Consensus       116 L~~~~VlvvG~Ggl-Gs~va~~La~aGvg~i~lvD~  150 (353)
T 3h5n_A          116 LKNAKVVILGCGGI-GNHVSVILATSGIGEIILIDN  150 (353)
T ss_dssp             HHTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEEEC
T ss_pred             HhCCeEEEECCCHH-HHHHHHHHHhCCCCeEEEECC
Confidence            47899999999996 9999999999996 8888864

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.65  E-value=0.067  Score=49.93  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=41.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~  295 (375)
                      .+|+|.|+++-+|+.++..|+++|++|+++.|...                     .+.+.++..|+||.++|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            47999999998999999999999999999876532                     133566788999988874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.65  E-value=0.03  Score=51.48  Aligned_cols=39  Identities=31%  Similarity=0.325  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999988999999999999999999877643

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.63  E-value=0.02  Score=52.37  Aligned_cols=38  Identities=34%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRN   40 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999998765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.62  E-value=0.024  Score=54.86  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHH
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPE  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~  280 (375)
                      .+||.....+..+.+..---.|++|+|+|.|. ||..+++++...|+ +|+.+.+.                   ..++.
T Consensus       170 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  248 (371)
T 1f8f_A          170 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV  248 (371)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HhcchHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHH
Confidence            34554444555553322223689999999865 69999998888998 57766433                   12333


Q ss_pred             hhcc-----CCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          281 EITR-----QADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       281 ~~l~-----~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                      +.++     .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       249 ~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  292 (371)
T 1f8f_A          249 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  292 (371)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            3222     4899999999765432  35778888888898653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=94.61  E-value=0.024  Score=50.79  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   34 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRS   34 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999889999999999999999998776

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.60  E-value=0.014  Score=55.90  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             ccCCHHHHHHHHHHh-----CCCCCCCEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCCC--------------CH-
Q 017184          222 IPCTPKGCIELLHRY-----GFDIKGKRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRTK--------------NP-  279 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~-----~i~l~GK~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t~--------------~L-  279 (375)
                      +||.....+..|++.     ++  .|++|+|+|+| .||..+++++...  |++|+.+.++..              +. 
T Consensus       148 l~~~~~ta~~al~~~~~~~~~~--~g~~VlV~GaG-~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          148 LADAGTTSMGAIRQALPFISKF--AEPVVIVNGIG-GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTC--SSCEEEEECCS-HHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             hhhhhHHHHHHHHhhhhcccCC--CCCEEEEECCC-HHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            355544556666665     55  89999999996 5699999999888  999888765421              11 


Q ss_pred             ------Hhhc--cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          280 ------EEIT--RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ------~~~l--~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                            ++..  +.+|+||.++|.+..+.  -+.++++-.++.+|..
T Consensus       225 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          225 DAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCC
Confidence                  1112  15899999999864332  2467887788888864

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.59  E-value=0.033  Score=50.68  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=31.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (264)
T 3i4f_A            4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS   40 (264)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999999889999999999999999988543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=94.59  E-value=0.032  Score=51.51  Aligned_cols=55  Identities=15%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCCC-------------------CHHhhcc--CCcEEEEccCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRTK-------------------NPEEITR--QADIIISAVGQP  296 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t~-------------------~L~~~l~--~ADIVIsAvG~p  296 (375)
                      +|+|+|.|+++-+|+.++..|+++  |++|+++.++..                   .+.+.++  ..|+||.++|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   79 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALL   79 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccC
Confidence            588999999998999999999998  889998876531                   1234555  789999888753

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.59  E-value=0.024  Score=52.04  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   46 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999998764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.58  E-value=0.035  Score=53.41  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=40.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSRT-------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      ||.|||+|+ ||.++|.+|+.++ + ++.+++...                         .+..+.+++|||||.++|.|
T Consensus         2 KV~IiGaG~-VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            699999987 5999999988776 3 677775330                         12246799999999999965


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        81 r   81 (294)
T 2x0j_A           81 R   81 (294)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=94.58  E-value=0.037  Score=50.19  Aligned_cols=34  Identities=21%  Similarity=0.104  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEE-c--CC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIV-H--SR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~-h--s~  275 (375)
                      ||+++|.|+++-+|+.++..|+++|++|+++ .  |+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~   37 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFAD   37 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCC
Confidence            6899999998889999999999999999998 5  54

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.57  E-value=0.045  Score=51.13  Aligned_cols=37  Identities=24%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .-.+++|+|.|+++-+|+.++..|+++|++|+++.+.
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            3468999999999999999999999999999998765

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.57  E-value=0.043  Score=51.76  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-----CeEEEEcCCCC--------------------CHHhhccC---CcEEEEcc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-----ATVSIVHSRTK--------------------NPEEITRQ---ADIIISAV  293 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-----AtVtv~hs~t~--------------------~L~~~l~~---ADIVIsAv  293 (375)
                      ||+|+|.|+++.+|+.++..|+++|     ++|+++.|...                    .+.+.++.   .|+||.++
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            5899999999999999999999999     89998876421                    13355666   89999888


Q ss_pred             CCC
Q 017184          294 GQP  296 (375)
Q Consensus       294 G~p  296 (375)
                      |..
T Consensus        81 ~~~   83 (364)
T 2v6g_A           81 WAN   83 (364)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.55  E-value=0.036  Score=54.00  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC------------------------CCHHhhccCCcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      ..++|+|||+|. ||.+++..|+..|.  +|++++...                        .+..+.+++||+||.++|
T Consensus         4 ~~~kI~ViGaG~-vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A            4 HVNKVALIGAGF-VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAG   82 (326)
T ss_dssp             SCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecc
Confidence            467899999976 59999999998885  788886431                        012357899999999999


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        83 ~p~   85 (326)
T 3pqe_A           83 ANQ   85 (326)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            653

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.54  E-value=0.043  Score=51.55  Aligned_cols=54  Identities=19%  Similarity=0.319  Sum_probs=43.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCCCC--------------------------CHHhhccCCcEEEEccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSRTK--------------------------NPEEITRQADIIISAVG  294 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~t~--------------------------~L~~~l~~ADIVIsAvG  294 (375)
                      |+|+|.|+++-+|+.++..|+++  |++|+++.+...                          .+.+.++.+|+||.++|
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            78999999999999999999998  889998866320                          13356778899999888


Q ss_pred             CC
Q 017184          295 QP  296 (375)
Q Consensus       295 ~p  296 (375)
                      ..
T Consensus        85 ~~   86 (348)
T 1oc2_A           85 ES   86 (348)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.53  E-value=0.046  Score=55.62  Aligned_cols=54  Identities=24%  Similarity=0.225  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------------CCCHHhhccCCc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------------TKNPEEITRQAD  287 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------------t~~L~~~l~~AD  287 (375)
                      -+++.|||.|- ||.|+|..|+..|.+|+.++..                                  |.+..+.+++||
T Consensus        21 m~~IaViGlGY-VGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           21 MASLSVLGLGY-VGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCEEEEEccCH-HHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            36899999988 5999999999999999988532                                  235567788999


Q ss_pred             EEEEccCCC
Q 017184          288 IIISAVGQP  296 (375)
Q Consensus       288 IVIsAvG~p  296 (375)
                      ++|.++|-|
T Consensus       100 ~~~I~VpTP  108 (444)
T 3vtf_A          100 ATFIAVGTP  108 (444)
T ss_dssp             EEEECCCCC
T ss_pred             ceEEEecCC
Confidence            999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d1a4ia1	170	c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy	6e-60
d1b0aa1	166	c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy	4e-57
d1edza2	146	c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/	3e-48
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	2e-43
d1a4ia2	125	c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/	2e-38
d1b0aa2	121	c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/	2e-38

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (480), Expect = 6e-60
 Identities = 93/167 (55%), Positives = 116/167 (69%)

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
              +N GRLA       FIPCTPKGC+EL+   G  I G+ AVV+GRS IVG P   LL 
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
             +ATV+  HS+T + +E   + DI++ A GQP MV+G WIKPGA++ID GIN V D K 
Sbjct: 61  WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKK 120

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
           P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 121 PNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  181 bits (461), Expect = 4e-57
 Identities = 84/172 (48%), Positives = 108/172 (62%), Gaps = 8/172 (4%)

Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
           FHP N+GRL  R   P   PCTP+G + LL RY  D  G  AVVIG SNIVG P ++ L 
Sbjct: 1   FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58

Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
               T ++ H  TKN       AD++I AVG+P  + G WIK GA++IDVGIN +E+   
Sbjct: 59  LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLEN--- 115

Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
               ++VGDV +E+A + AS ITPVPGGVGPMT+A L+ NTL +    H+ Q
Sbjct: 116 ---GKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQ 164

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (400), Expect = 3e-48
 Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 84  AKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
            + I    VA+    EI   V   K    G  P L   L  +   +  Y    +K  +S+
Sbjct: 3   GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 62

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G       L     +  + + I   N D SV+GI+V  P+  +  +Q +   V  EKDV+
Sbjct: 63  GFRY---DLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 119

Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCI 230
           G + +    L                 I
Sbjct: 120 GLNHVYYQNLYH--NVRYLDKENRLKSI 145

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  146 bits (370), Expect = 2e-43
 Identities = 47/183 (25%), Positives = 67/183 (36%), Gaps = 53/183 (28%)

Query: 223 PCTPKGCIELLHRY---------GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH 273
           PCTP   +++L            G  + GK+ +VI RS IVG P A LL  + ATV  V 
Sbjct: 1   PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60

Query: 274 SRTKN-------------------------PEEITRQADIIISAVGQPNM-VRGSWIKPG 307
                                          ++ +  +D++I+ V   N      +IK G
Sbjct: 61  VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120

Query: 308 AVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTS 367
           AV I+                       ++  E AS   P+ G V   TIAMLL N L  
Sbjct: 121 AVCINFACT---------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNMLRL 162

Query: 368 AKR 370
            + 
Sbjct: 163 VRN 165

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 2e-38
 Identities = 52/125 (41%), Positives = 85/125 (68%), Gaps = 3/125 (2%)

Query: 82  ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
           A A++++GK ++ QIR  +  +V+++K+ + G  P LA++ VG+R DS  Y+  K KA +
Sbjct: 1   APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 60

Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
            +GI +  + LP  T+E EV+K+I+  N+D +VHG LVQLPL     I+ + ++NA++ E
Sbjct: 61  EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 120

Query: 199 KDVDG 203
           KDVDG
Sbjct: 121 KDVDG 125

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  131 bits (331), Expect = 2e-38
 Identities = 58/121 (47%), Positives = 76/121 (62%)

Query: 83  SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
           +AK+IDGK +A+Q+R E+  +V     A    PGLAV+LVG    S  YV +K+KAC+ V
Sbjct: 1   AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 60

Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
           G  S    LPE TSE E+L+ I   N D ++ GILVQLPLP  ID   +L  +  +KDVD
Sbjct: 61  GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 120

Query: 203 G 203
           G
Sbjct: 121 G 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza2	146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	100.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1b0aa2	121	Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc	100.0
d1a4ia2	125	Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum	100.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.58
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.55
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.53
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.47
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.21
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.02
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.49
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.36
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.17
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.15
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.04
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.03
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.02
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.01
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.89
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.8
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.79
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.73
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.71
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.66
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.43
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.37
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.36
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.24
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	97.06
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.06
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.04
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.02
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.01
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.97
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.95
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.93
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.92
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.89
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.87
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.87
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.79
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.79
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.78
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.78
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.76
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.75
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.75
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.74
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.7
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.69
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.68
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.67
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.67
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.64
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.63
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.63
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.59
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.59
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.58
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.58
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.58
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.58
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.56
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.52
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.52
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.5
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.49
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.48
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.47
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.47
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.47
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.46
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.46
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.44
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.43
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.42
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.42
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.36
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.36
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.35
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.34
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.34
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.33
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.32
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.29
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.29
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.29
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.27
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.26
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.26
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.26
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.26
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.23
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.21
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.19
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.16
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.16
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.12
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.12
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.08
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.05
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.99
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.97
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.95
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.94
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.92
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.9
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.9
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.9
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.89
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.87
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.86
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.83
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.8
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.79
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.77
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.76
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.75
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.74
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.7
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.69
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.63
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.63
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.62
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.58
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.57
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.52
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.47
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.46
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.44
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.38
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.37
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.26
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.19
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.13
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.08
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.03
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.98
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.96
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.92
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.85
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.85
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.85
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.81
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.81
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.76
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.75
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.71
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	94.69
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	94.64
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.54
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.53
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.4
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.32
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.32
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.28
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.28
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.25
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.2
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.19
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.13
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.12
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.11
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.08
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.05
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.04
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.0
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.0
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.93
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.85
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.8
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.78
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	93.75
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.74
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.61
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.61
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	93.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.52
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.49
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.47
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.46
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.39
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.37
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.36
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.35
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.29
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.23
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.23
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.18
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.14
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.13
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.02
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.96
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.89
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	92.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.78
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.61
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	92.61
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.38
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.37
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.3
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.26
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.22
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.2
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.1
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.02
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.98
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.97
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.69
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.5
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	91.48
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	91.46
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.44
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.43
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.33
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.32
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	91.27
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.25
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.2
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.17
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.08
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	91.04
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.03
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.98
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	90.94
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.88
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.53
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	90.51
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.46
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.56
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.53
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.3
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.19
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	89.11
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	88.86
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	88.82
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.63
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.48
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.35
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.32
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.13
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	87.97
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.87
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	87.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.83
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.52
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.46
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.24
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.14
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	86.59
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	86.48
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.33
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.3
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.17
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	86.1
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	85.88
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.86
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.74
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.28
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	85.08
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	84.96
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	84.83
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.83
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.77
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.52
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	84.3
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.75
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.24
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.08
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	82.75
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	82.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	81.74
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	81.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.85
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.55
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.54
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	80.3
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	80.06

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-56  Score=395.76  Aligned_cols=164  Identities=51%  Similarity=0.876  Sum_probs=158.2

Q ss_pred             cccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhc
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT  283 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l  283 (375)
                      |||+|+|+|..|  .+.|+||||+||+++|++|+++++||+|+|||||++||+|+++||.++|||||+||++|+++++++
T Consensus         1 fhp~N~G~l~~~--~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1           1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             CSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCchhHHHHhCC--CCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH
Confidence            799999999976  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHH
Q 017184          284 RQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN  363 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N  363 (375)
                      ++|||||+|+|+|++|+++|+|+|++|||+|+++.+++      +++||+||+++.++|+++|||||||||||++|||+|
T Consensus        79 ~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~~~~~~------~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N  152 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIEN  152 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTTS------CEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHH
T ss_pred             hhhhHhhhhccCcccccccccCCCcEEEecCceecCCC------CEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999998762      899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q 017184          364 TLTSAKRVHNFQ  375 (375)
Q Consensus       364 ~v~a~~~~~~~~  375 (375)
                      +++++++|++-|
T Consensus       153 ~v~a~~~~~~~~  164 (166)
T d1b0aa1         153 TLQACVEYHDPQ  164 (166)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             HHHHHHHHhCcc
Confidence            999999998744

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-55  Score=395.64  Aligned_cols=170  Identities=55%  Similarity=0.911  Sum_probs=155.9

Q ss_pred             cccchhhhcccCCCccccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhc
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT  283 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l  283 (375)
                      +|++|+|+|..|+.+++|+||||.||+++|++|+++++||+|+|||||++||+|+++||+++||||++||++|+++.+++
T Consensus         1 l~~~N~G~l~~g~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1           1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             CSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             CCccchhhHhcCCCCCCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            68999999998865789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHH
Q 017184          284 RQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN  363 (375)
Q Consensus       284 ~~ADIVIsAvG~p~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N  363 (375)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.+++..+.|+|++||+||+++.++|+++|||||||||||++|||+|
T Consensus        81 ~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L~~N  160 (170)
T d1a4ia1          81 NKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQS  160 (170)
T ss_dssp             TTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHH
T ss_pred             hhccchhhccccccccccccccCCCeEeccCcccccccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999998775555667999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 017184          364 TLTSAKRVHN  373 (375)
Q Consensus       364 ~v~a~~~~~~  373 (375)
                      +++++|||+.
T Consensus       161 ~v~a~~r~l~  170 (170)
T d1a4ia1         161 TVESAKRFLE  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999973

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-42  Score=300.64  Aligned_cols=143  Identities=23%  Similarity=0.246  Sum_probs=133.9

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhcc-CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      ++++|||+++|++|++++++++++|+++. |++|+|++|+||+|++|..|+++|.|+|+++||+++.   ++..+++|++
T Consensus         2 pgkiidG~~iA~~i~~~l~~~v~~l~~~~~g~~P~Lavilvg~d~aS~~Yv~~k~k~a~~~Gi~~~l---~~~~~~~~l~   78 (146)
T d1edza2           2 PGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDL---RVIEDKDFLE   78 (146)
T ss_dssp             CCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEE---EECSSGGGHH
T ss_pred             CCeeccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCcccc---CccchHHHHH
Confidence            46899999999999999999999998764 7999999999999999999999999999999999764   4456789999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchhhhcccCCCccccccCCHHHHH
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCI  230 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~G~l~~g~~~~~~~PcT~~gvi  230 (375)
                      +.|++||+|++|||||||+|||.|+|++.++++|+|+|||||+|+.|+|+|+.|  ..++.||||+||+
T Consensus        79 ~~I~~LN~D~~V~GIlvQlPLP~~i~~~~i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~i  145 (146)
T d1edza2          79 EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKSI  145 (146)
T ss_dssp             HHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBCC
T ss_pred             HHHHHHhcchhhhhhhhcCCCCcccCHHHHHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCcc
Confidence            999999999999999999999999999999999999999999999999999986  7789999999864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-41  Score=301.55  Aligned_cols=133  Identities=35%  Similarity=0.502  Sum_probs=122.4

Q ss_pred             cCCHHHHHHHHHHhCC---------CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC---------------
Q 017184          223 PCTPKGCIELLHRYGF---------DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN---------------  278 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i---------~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~---------------  278 (375)
                      ||||.||++||++|++         +++||+|+|||||++||+|+|.||+++|||||+||+++.+               
T Consensus         1 PcTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1edza1           1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHV   80 (171)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEE
T ss_pred             CCcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeecc
Confidence            9999999999999998         9999999999999999999999999999999999987522               


Q ss_pred             ----------HHhhccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceecc
Q 017184          279 ----------PEEITRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITP  347 (375)
Q Consensus       279 ----------L~~~l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTP  347 (375)
                                +++++++|||||+|+|.|++ ++.||+|+|++|||+|++++.               ++++.++|++|||
T Consensus        81 ~~~~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~~~---------------~~~v~~~a~~iTP  145 (171)
T d1edza1          81 EDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF---------------SDDVKEKASLYVP  145 (171)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSCCB---------------CGGGGTTEEEEES
T ss_pred             ccccccchhHHhhccccCCEEEEccCCCccccChhhcccCceEeeccccccc---------------ccchhheeeEEcC
Confidence                      67888899999999999998 999999999999999987532               2467899999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhc
Q 017184          348 VPGGVGPMTIAMLLSNTLTSAKRVHN  373 (375)
Q Consensus       348 VPGGVGp~T~amLl~N~v~a~~~~~~  373 (375)
                      |||||   |++|||+|+++++|+|..
T Consensus       146 VPGGV---TvamLl~N~v~a~~~~~~  168 (171)
T d1edza1         146 MTGKV---TIAMLLRNMLRLVRNVEL  168 (171)
T ss_dssp             CCHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             CCCHH---HHHHHHHHHHHHHHHHHh
Confidence            99997   999999999999998753

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-37  Score=259.53  Aligned_cols=121  Identities=48%  Similarity=0.733  Sum_probs=118.5

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLK  162 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~  162 (375)
                      +|++||||++|++|+++++++++.++++.+++|+|++|+||+|++|..|+++|.|+|+++||+++.+.||++++|+||++
T Consensus         1 ~A~iLdGk~vA~~i~~~l~~~i~~~~~~~~~~P~LavI~vg~d~aS~~Yv~~k~k~a~~lGi~~~~~~l~~~~t~~~l~~   80 (121)
T d1b0aa2           1 AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLE   80 (121)
T ss_dssp             CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHH
T ss_pred             CCEeccHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCChhHHHHHHHHHHHHHhhccceeeeeccccccHHHHHH
Confidence            47899999999999999999999999887889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       163 ~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      .|++||+|++|||||||+|||.|++++.++++|+|+|||||
T Consensus        81 ~I~~lN~d~~v~GIlvqlPLP~~i~~~~i~~~I~p~KDVDG  121 (121)
T d1b0aa2          81 LIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG  121 (121)
T ss_dssp             HHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTC
T ss_pred             HHHHHhCCCchhhhhhcCCCCCCcCHHHHHhccCcCcCCCC
Confidence            99999999999999999999999999999999999999998

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=255.96  Aligned_cols=121  Identities=42%  Similarity=0.780  Sum_probs=117.5

Q ss_pred             cceeeecHHHHHHHHHHHHHHHHHhHhcc-CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 017184           83 SAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVL  161 (375)
Q Consensus        83 ~a~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~  161 (375)
                      +|++||||++|++|++++++++++|+++. |++|+|++|+||+|++|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         2 ~a~iLdGk~vA~~i~~~lk~~v~~l~~~~~g~~P~LavIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~el~   81 (125)
T d1a4ia2           2 PAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVM   81 (125)
T ss_dssp             CCEECCHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHH
T ss_pred             CCEEeehHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCChhHHHHHHHHHHHHHhccceEEEEecCcchhHHHHH
Confidence            47899999999999999999999998875 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccEEEEeCCCCCC--CCHHHHHhhCCcccccCc
Q 017184          162 KHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       162 ~~I~~LN~D~~V~GIlVqlPLp~~--i~~~~i~~~I~p~KDVDG  203 (375)
                      +.|++||+|++|||||||+|||.|  +++++++++|+|+|||||
T Consensus        82 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~~~i~~~I~p~KDVDG  125 (125)
T d1a4ia2          82 KYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDG  125 (125)
T ss_dssp             HHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTC
T ss_pred             HHHHHHhccCCcceEEEecCCCCCCCcCHHHHHhcCCCCcCCCC
Confidence            999999999999999999999986  999999999999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.4e-15  Score=133.05  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC------------------HH-hhccCCc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------------------PE-EITRQAD  287 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~------------------L~-~~l~~AD  287 (375)
                      .|+++.|++.+++++||+|+|+|+|++ +|+++..|.+.|++|++++|+...                  +. ....++|
T Consensus         3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~d   81 (170)
T d1nyta1           3 VGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFD   81 (170)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCS
T ss_pred             hHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccc
Confidence            789999999999999999999999998 999999999999999999987311                  11 1246789


Q ss_pred             EEEEccCC---C--CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHH
Q 017184          288 IIISAVGQ---P--NMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLS  362 (375)
Q Consensus       288 IVIsAvG~---p--~~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~  362 (375)
                      +||++++.   +  ..++.+.++++++|+|+.|+|.+|       +|..      .++..|+.+ +-+|.+     ||++
T Consensus        82 liIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T-------~ll~------~A~~~G~~~-~i~Gl~-----MLi~  142 (170)
T d1nyta1          82 LIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT-------PFLA------WCEQRGSKR-NADGLG-----MLVA  142 (170)
T ss_dssp             EEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC-------HHHH------HHHHTTCCE-EECTHH-----HHHH
T ss_pred             eeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCC-------HHHH------HHHHcCCCc-ccCCHH-----HHHH
Confidence            99998862   2  235667899999999999999877       4554      244556522 345666     9999


Q ss_pred             HHHHHHHHHhccC
Q 017184          363 NTLTSAKRVHNFQ  375 (375)
Q Consensus       363 N~v~a~~~~~~~~  375 (375)
                      |.+.+++.|+|.+
T Consensus       143 Qa~~~f~lwtG~~  155 (170)
T d1nyta1         143 QAAHAFLLWHGVL  155 (170)
T ss_dssp             HHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999999863

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=4.8e-15  Score=130.85  Aligned_cols=128  Identities=24%  Similarity=0.326  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCCCH--------------------------
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTKNP--------------------------  279 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~~L--------------------------  279 (375)
                      .|+++.|++.+++++||+|+|+|+|++ ||+++..|...|+ ++++++|+..++                          
T Consensus         3 ~Gf~~~l~~~~~~l~~k~vlIlGaGGa-arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (182)
T d1vi2a1           3 TGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQ   81 (182)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCH
T ss_pred             HHHHHHHHHcCCCcCCCEEEEECCcHH-HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccc
Confidence            789999999999999999999999997 9999999999997 799999874322                          


Q ss_pred             ---HhhccCCcEEEEccCC---C--C--c-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccC
Q 017184          280 ---EEITRQADIIISAVGQ---P--N--M-VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPV  348 (375)
Q Consensus       280 ---~~~l~~ADIVIsAvG~---p--~--~-I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPV  348 (375)
                         .+.+..+|+||++++.   +  .  + .+.+.++++.+|+|+.|+|.+|       +|..      .++..++  ++
T Consensus        82 ~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T-------~ll~------~a~~~g~--~~  146 (182)
T d1vi2a1          82 QAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT-------KLLQ------QAQQAGC--KT  146 (182)
T ss_dssp             HHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSC-------HHHH------HHHTTTC--EE
T ss_pred             cchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCcccc-------HHHH------HHHHCcC--eE
Confidence               2335789999999863   1  1  1 2445688999999999999876       4543      3566676  34


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHhccC
Q 017184          349 PGGVGPMTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       349 PGGVGp~T~amLl~N~v~a~~~~~~~~  375 (375)
                      -+|.+     ||++|.+++++.|+|.+
T Consensus       147 i~Gl~-----Mli~Qa~~~f~iwtg~~  168 (182)
T d1vi2a1         147 IDGYG-----MLLWQGAEQFTLWTGKD  168 (182)
T ss_dssp             ECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             eccHH-----HHHHHHHHHHHHHhCCC
Confidence            55666     99999999999999863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=5.8e-15  Score=129.63  Aligned_cols=127  Identities=22%  Similarity=0.280  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC------------------------CHHhh
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------------------NPEEI  282 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~------------------------~L~~~  282 (375)
                      .|+++.|++++.+++||+|+|+|+|++ +|+++..|.+.| .|+|.+|+..                        ++...
T Consensus         3 ~G~~~~l~~~~~~~~~k~vlIlGaGG~-arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (177)
T d1nvta1           3 IGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD   80 (177)
T ss_dssp             HHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC
T ss_pred             HHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc
Confidence            789999999999999999999999997 999999998776 9999999732                        23345


Q ss_pred             ccCCcEEEEccCCC---C-----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccH
Q 017184          283 TRQADIIISAVGQP---N-----MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGP  354 (375)
Q Consensus       283 l~~ADIVIsAvG~p---~-----~I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp  354 (375)
                      ...+|++|++++..   .     .++.++++++.+|+|+.|+|.++       .|+-      .++.+++  ++-+|.+ 
T Consensus        81 ~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T-------~l~~------~a~~~G~--~~i~Gl~-  144 (177)
T d1nvta1          81 LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET-------VLLK------EAKKVNA--KTINGLG-  144 (177)
T ss_dssp             CTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC-------HHHH------HHHTTTC--EEECTHH-
T ss_pred             cchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhH-------HHHH------HHHHCCC--cccCCHH-
Confidence            68899999998742   1     25667889999999999999877       4554      3556676  3445665 


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 017184          355 MTIAMLLSNTLTSAKRVHNFQ  375 (375)
Q Consensus       355 ~T~amLl~N~v~a~~~~~~~~  375 (375)
                          ||++|.+.+++.|+|.+
T Consensus       145 ----MLv~Qa~~qf~lwtg~~  161 (177)
T d1nvta1         145 ----MLIYQGAVAFKIWTGVE  161 (177)
T ss_dssp             ----HHHHHHHHHHHHHHSSC
T ss_pred             ----HHHHHHHHHHHHHHCCC
Confidence                99999999999999863

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.53  E-value=3.4e-15  Score=130.57  Aligned_cols=126  Identities=15%  Similarity=0.257  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCCC---HH----------hhccCCcEEEEc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTKN---PE----------EITRQADIIISA  292 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~~---L~----------~~l~~ADIVIsA  292 (375)
                      .|+.++|++++++ ++|+|+|+|+|++ +|+++..|.+.|+ +|+|++|+.+.   |.          ....++|+||+|
T Consensus         3 ~G~~~~l~~~~~~-~~~~vlIlGaGGa-arai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliINa   80 (167)
T d1npya1           3 IAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNV   80 (167)
T ss_dssp             HHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEEC
T ss_pred             HHHHHHHHHcCCC-CCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhheec
Confidence            6899999999998 8999999999997 9999999999997 79999987321   11          124678999999


Q ss_pred             cCC---CCc------ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHHHH
Q 017184          293 VGQ---PNM------VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN  363 (375)
Q Consensus       293 vG~---p~~------I~~~~vk~gavVIDvgin~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl~N  363 (375)
                      ++.   |+.      ++..+++++++|+|+.|+|.+|       +|..      .++..|+  ++-+|.+     ||++|
T Consensus        81 TpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T-------~ll~------~A~~~G~--~~i~Gl~-----Mli~Q  140 (167)
T d1npya1          81 TSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-------PFIR------YAQARGK--QTISGAA-----VIVLQ  140 (167)
T ss_dssp             SSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-------HHHH------HHHHTTC--EEECHHH-----HHHHH
T ss_pred             cccCCccccccccccccHhhcCCcceEEEEeeccCCC-------HHHH------HHHHCCC--eEEECHH-----HHHHH
Confidence            862   221      3445678899999999999877       4654      2456676  3456666     99999


Q ss_pred             HHHHHHHHhcc
Q 017184          364 TLTSAKRVHNF  374 (375)
Q Consensus       364 ~v~a~~~~~~~  374 (375)
                      .+++++.|+|.
T Consensus       141 a~~~f~lwtg~  151 (167)
T d1npya1         141 AVEQFELYTHQ  151 (167)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhCC
Confidence            99999999985

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.47  E-value=1.4e-14  Score=127.29  Aligned_cols=129  Identities=16%  Similarity=0.255  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH-------------------hhccCCc
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE-------------------EITRQAD  287 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~-------------------~~l~~AD  287 (375)
                      .|+++.|++.+++++||+|+|+|+|++ +|+++..|.+.+.+|+|.+|+.+..+                   ..+.++|
T Consensus         3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d   81 (171)
T d1p77a1           3 IGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYD   81 (171)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCS
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccc
Confidence            689999999999999999999999997 99999999988889999999742111                   1256899


Q ss_pred             EEEEccCCC--C---cccCCCcCCCcEEEEeee-cCCCCCCCCCCceeecccchhhhhhhcceeccCCCCccHHHHHHHH
Q 017184          288 IIISAVGQP--N---MVRGSWIKPGAVIIDVGI-NPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLL  361 (375)
Q Consensus       288 IVIsAvG~p--~---~I~~~~vk~gavVIDvgi-n~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~amLl  361 (375)
                      +||++++.-  +   ....+.++++.+++|+.| +|.+|       .|..      .++..++-+ +.+|.+     ||+
T Consensus        82 iiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T-------~~l~------~A~~~g~~~-v~~Gl~-----Ml~  142 (171)
T d1p77a1          82 LVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDT-------PFIA------LCKSLGLTN-VSDGFG-----MLV  142 (171)
T ss_dssp             EEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCC-------HHHH------HHHHTTCCC-EECSHH-----HHH
T ss_pred             eeeecccccccccccchhhhhhcccceeeeeeccCcccH-------HHHH------HHHHcCCCc-ccCcHH-----HHH
Confidence            999998742  1   123345677899999999 67766       4443      355566533 656777     999


Q ss_pred             HHHHHHHHHHhccC
Q 017184          362 SNTLTSAKRVHNFQ  375 (375)
Q Consensus       362 ~N~v~a~~~~~~~~  375 (375)
                      +|.+.+++.|+|..
T Consensus       143 ~Qa~~~f~iwtg~~  156 (171)
T d1p77a1         143 AQAAHSFHLWRGVM  156 (171)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999999863

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.21  E-value=9.1e-12  Score=108.15  Aligned_cols=95  Identities=18%  Similarity=0.252  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-----------------CCHHhhccCC
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-----------------KNPEEITRQA  286 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-----------------~~L~~~l~~A  286 (375)
                      .+.++++++++...++++|+|+|||+|++ |+.++..|..+|+ .+++++|+.                 .++.+.+.++
T Consensus         7 v~~aAv~la~~~~~~l~~~~ilviGaG~~-g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~   85 (159)
T d1gpja2           7 IGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS   85 (159)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcccCeEEEECCCHH-HHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccC
Confidence            45778888888877999999999999886 9999999999998 699999872                 3677889999


Q ss_pred             cEEEEccCCCCc-ccCCCcC---------CCcEEEEeeecCCCC
Q 017184          287 DIIISAVGQPNM-VRGSWIK---------PGAVIIDVGINPVED  320 (375)
Q Consensus       287 DIVIsAvG~p~~-I~~~~vk---------~gavVIDvgin~~~~  320 (375)
                      ||||++++.|+. +++++++         +..++||+++++.-+
T Consensus        86 Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          86 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            999999999985 7888874         346999999987544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.02  E-value=2.8e-10  Score=99.54  Aligned_cols=88  Identities=25%  Similarity=0.346  Sum_probs=76.5

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEccCCCC
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      -+++..+.-+.||+++|+|.|.+ ||-+|+.|...||.|+|+...             ...+++.++.+||+|++||.++
T Consensus        12 ~i~r~t~~~laGk~vvV~GYG~v-GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSS
T ss_pred             HHHHHhCceecCCEEEEeccccc-chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCCc
Confidence            34456799999999999999995 999999999999999999764             3578899999999999999999


Q ss_pred             cccCCC---cCCCcEEEEeeecCCC
Q 017184          298 MVRGSW---IKPGAVIIDVGINPVE  319 (375)
Q Consensus       298 ~I~~~~---vk~gavVIDvgin~~~  319 (375)
                      .|+.++   +|+|++|..+|....|
T Consensus        91 vI~~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          91 VIKLEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             SBCHHHHTTCCTTCEEEECSSTTTS
T ss_pred             cccHHHHHHhhCCeEEEeccccchh
Confidence            988765   5889999999976543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.7e-10  Score=98.88  Aligned_cols=91  Identities=24%  Similarity=0.346  Sum_probs=77.9

Q ss_pred             HHHH-HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------CCCHHhhccCCcEEEEc
Q 017184          227 KGCI-ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       227 ~gvi-~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------t~~L~~~l~~ADIVIsA  292 (375)
                      +.++ -+++..+..+.||+|+|+|.|.+ ||.+|..|...||.|+++...             ...+++.++.||++|++
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~GyG~i-G~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvta   86 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTT   86 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC
T ss_pred             hhHHHHHHHHhCceecCCEEEEeccccc-cHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEec
Confidence            4444 44456899999999999999995 999999999999999999765             35788999999999999


Q ss_pred             cCCCCcccCCC---cCCCcEEEEeeecCC
Q 017184          293 VGQPNMVRGSW---IKPGAVIIDVGINPV  318 (375)
Q Consensus       293 vG~p~~I~~~~---vk~gavVIDvgin~~  318 (375)
                      +|.++.|+.++   +|+|+++..+|....
T Consensus        87 TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~  115 (163)
T d1li4a1          87 TGCIDIILGRHFEQMKDDAIVCNIGHFDV  115 (163)
T ss_dssp             SSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred             CCCccchhHHHHHhccCCeEEEEeccccc
Confidence            99999998765   589999999996543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.62  E-value=1.3e-08  Score=89.27  Aligned_cols=77  Identities=30%  Similarity=0.467  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------------CCCHHhhccCCcEEEEccC----
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRQADIIISAVG----  294 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG----  294 (375)
                      +...+|+|||+|.+ |...+..+.+.||.|++.+.+                     ..++++.+++||+||+++=    
T Consensus        30 v~pa~V~ViGaGva-G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCChH-HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46779999999885 999999999999999999765                     1357789999999999884    


Q ss_pred             -CCCcccCCCc---CCCcEEEEeeecC
Q 017184          295 -QPNMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       295 -~p~~I~~~~v---k~gavVIDvgin~  317 (375)
                       .|++|+.+|+   |||+++||+.+..
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence             4678999876   8899999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.49  E-value=6.4e-08  Score=84.71  Aligned_cols=90  Identities=24%  Similarity=0.320  Sum_probs=67.5

Q ss_pred             CCHHHHHHHH-HHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------
Q 017184          224 CTPKGCIELL-HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------  276 (375)
Q Consensus       224 cT~~gvi~lL-~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------  276 (375)
                      +|+.|.+..+ +..+.+|+||+++|.|+++-+|+.++..|+++|++|+++.|+.                          
T Consensus         4 ~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~   83 (191)
T d1luaa1           4 TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD   83 (191)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH
T ss_pred             ccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccH
Confidence            3556655555 6669999999999999888889999999999999999998762                          


Q ss_pred             CCHHhhccCCcEEEEccCCC-CcccCCCcCC---CcEEEEe
Q 017184          277 KNPEEITRQADIIISAVGQP-NMVRGSWIKP---GAVIIDV  313 (375)
Q Consensus       277 ~~L~~~l~~ADIVIsAvG~p-~~I~~~~vk~---gavVIDv  313 (375)
                      .++++.+.++||||+++|.+ ..++.+.+++   -.++.|+
T Consensus        84 ~~~~~~~~~iDilin~Ag~g~~~~~~e~~~~~~~~nv~~~~  124 (191)
T d1luaa1          84 ASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADY  124 (191)
T ss_dssp             HHHHHHTTTCSEEEECCCTTCCCBCHHHHHTCTTCCEEEEC
T ss_pred             HHHHHHhcCcCeeeecCccccccCCHHHHHhhhcceeehhH
Confidence            23557789999999998853 3455544432   2345554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.36  E-value=2.7e-07  Score=81.74  Aligned_cols=76  Identities=26%  Similarity=0.372  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------------------------------
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------------------------------  277 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------------------------------  277 (375)
                      ...+|+|||+|.+ |...+....+.||.|++.+.+..                                           
T Consensus        28 ~pa~VvViGaGva-G~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            4569999999875 99999999999999999975421                                           


Q ss_pred             CHHhhccCCcEEEEccC-----CCCcccCCCc---CCCcEEEEeeecC
Q 017184          278 NPEEITRQADIIISAVG-----QPNMVRGSWI---KPGAVIIDVGINP  317 (375)
Q Consensus       278 ~L~~~l~~ADIVIsAvG-----~p~~I~~~~v---k~gavVIDvgin~  317 (375)
                      .+.+.+++||+||+++=     .|.+|+++|+   |||+++||+++..
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq  154 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence            13355889999998884     4668999876   8899999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.29  E-value=6e-07  Score=78.74  Aligned_cols=75  Identities=25%  Similarity=0.352  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------CCHHhhccCCcEEEEccCC----CCcccCC---C
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------KNPEEITRQADIIISAVGQ----PNMVRGS---W  303 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------~~L~~~l~~ADIVIsAvG~----p~~I~~~---~  303 (375)
                      .++||++.|||.|.+ |+.++.+|..-|+.|+.+++..        .++++.++++|||+.+++.    .++|+.+   .
T Consensus        39 ~l~gk~vgIiG~G~I-G~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             cccCceEEEeccccc-cccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeee
Confidence            489999999999996 9999999999999999997653        4688999999999998874    2467664   5


Q ss_pred             cCCCcEEEEee
Q 017184          304 IKPGAVIIDVG  314 (375)
Q Consensus       304 vk~gavVIDvg  314 (375)
                      +|+|+++|++|
T Consensus       118 mk~~ailIN~~  128 (181)
T d1qp8a1         118 MAEDAVFVNVG  128 (181)
T ss_dssp             SCTTCEEEECS
T ss_pred             ccccceEEecc
Confidence            69999999998

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.17  E-value=8.4e-07  Score=78.92  Aligned_cols=79  Identities=22%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------CCHHhhccCCcEEEEccCC----CCcccC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------KNPEEITRQADIIISAVGQ----PNMVRG  301 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------~~L~~~l~~ADIVIsAvG~----p~~I~~  301 (375)
                      +.++.||+|.|||.|.+ |+.+|.+|..-|++|..+++..           .++.+.++++|+|+.+++.    -++|..
T Consensus        38 g~el~gk~vgIiG~G~I-G~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred             CccccCCeEEEeccccc-chhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccH
Confidence            56789999999999996 9999999999999999887542           4788999999999999873    346776


Q ss_pred             CC---cCCCcEEEEeeec
Q 017184          302 SW---IKPGAVIIDVGIN  316 (375)
Q Consensus       302 ~~---vk~gavVIDvgin  316 (375)
                      +.   +|+|+++|+++--
T Consensus       117 ~~l~~mk~~a~lIN~sRG  134 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRG  134 (197)
T ss_dssp             HHHHHSCTTEEEEECSCG
T ss_pred             HHHhhhCCccEEEecCch
Confidence            54   5899999999843

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.15  E-value=1.5e-06  Score=76.93  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             HhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------CCHHhhccCCcEEEEccCCC----C
Q 017184          235 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITRQADIIISAVGQP----N  297 (375)
Q Consensus       235 ~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------~~L~~~l~~ADIVIsAvG~p----~  297 (375)
                      ..+.++.||++.|||.|.+ |+.++.+|..-|++|..+.+..             .+|++.+++||+|+..++..    +
T Consensus        42 ~~~~eL~gktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~  120 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH  120 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred             cCceeeeCceEEEeccccc-cccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchh
Confidence            3467899999999999997 9999999999999999987652             36889999999999888732    3


Q ss_pred             cccCC---CcCCCcEEEEeeec
Q 017184          298 MVRGS---WIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~---~vk~gavVIDvgin  316 (375)
                      +|..+   .+|+|+++|++|--
T Consensus       121 li~~~~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         121 LINDFTVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             SBSHHHHTTSCTTEEEEECSCT
T ss_pred             hhhHHHHhccCCCCeEEecCCc
Confidence            56654   67999999999843

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=3e-06  Score=74.13  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC------------CCHHhhccCCcEEEEccCC----CCccc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITRQADIIISAVGQ----PNMVR  300 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t------------~~L~~~l~~ADIVIsAvG~----p~~I~  300 (375)
                      +.++.||++.|+|.|.+ |+.++.+|..-|++|....++.            .++++.+++||||+..++.    .++|+
T Consensus        39 ~~~l~~k~vgiiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccch-hHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            56789999999999997 9999999999999999887653            3678899999999998873    24676


Q ss_pred             CC---CcCCCcEEEEeeecC
Q 017184          301 GS---WIKPGAVIIDVGINP  317 (375)
Q Consensus       301 ~~---~vk~gavVIDvgin~  317 (375)
                      .+   .+|+|+++|++|--.
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~  137 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGG  137 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTT
T ss_pred             HHHHhhhCCCceEEEecchh
Confidence            64   568999999998443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=3.6e-06  Score=73.64  Aligned_cols=80  Identities=21%  Similarity=0.396  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRGS  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~~  302 (375)
                      +.++.||++.|||.|.+ |+.++.+|..-|++|+...++.          .++++.+++||||+..++..    ++|+.+
T Consensus        39 ~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             cccccceEEEEeecccc-hhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHH
Confidence            45799999999999996 9999999999999999997642          36899999999999988742    467776


Q ss_pred             C---cCCCcEEEEeeecC
Q 017184          303 W---IKPGAVIIDVGINP  317 (375)
Q Consensus       303 ~---vk~gavVIDvgin~  317 (375)
                      .   +|+|+++|+++-..
T Consensus       118 ~l~~mk~~a~lIN~aRG~  135 (188)
T d1sc6a1         118 EISLMKPGSLLINASRGT  135 (188)
T ss_dssp             HHHHSCTTEEEEECSCSS
T ss_pred             HHhhCCCCCEEEEcCcHH
Confidence            4   48999999998544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.02  E-value=5.1e-06  Score=72.64  Aligned_cols=80  Identities=15%  Similarity=0.255  Sum_probs=67.0

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------CCCHHhhccCCcEEEEccCCC----C
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITRQADIIISAVGQP----N  297 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------t~~L~~~l~~ADIVIsAvG~p----~  297 (375)
                      .+.+++|+++.|||.|.+ |+.++.+|..-|+.|....+.              ..++.+.++++|+|+..++..    +
T Consensus        38 ~~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          38 HAYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TCCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             cceeccccceeecccccc-chhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            467899999999999996 999999999999999988764              246889999999999888732    3


Q ss_pred             cccCC---CcCCCcEEEEeeec
Q 017184          298 MVRGS---WIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~---~vk~gavVIDvgin  316 (375)
                      +|..+   .+|+|+++|+++--
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCG
T ss_pred             hhHHHHHHhCCCCCEEEecCch
Confidence            67654   56999999999843

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.01  E-value=2.8e-06  Score=75.28  Aligned_cols=80  Identities=24%  Similarity=0.328  Sum_probs=67.2

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC----------CCHHhhccCCcEEEEccCCC----CcccCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----------KNPEEITRQADIIISAVGQP----NMVRGS  302 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t----------~~L~~~l~~ADIVIsAvG~p----~~I~~~  302 (375)
                      +.++.||++.|||.|.+ |+.++.+|..-|++|..++++.          .++.+.++++|+|+..++..    ++|+.+
T Consensus        40 ~~~l~~ktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             cccccceeeeeeecccc-cccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHH
Confidence            56899999999999997 9999999999999999997652          36889999999999888742    367766


Q ss_pred             C---cCCCcEEEEeeecC
Q 017184          303 W---IKPGAVIIDVGINP  317 (375)
Q Consensus       303 ~---vk~gavVIDvgin~  317 (375)
                      .   +|+|+++|++|--.
T Consensus       119 ~l~~mk~~a~lIN~aRG~  136 (199)
T d1dxya1         119 AFNLMKPGAIVINTARPN  136 (199)
T ss_dssp             HHHHSCTTEEEEECSCTT
T ss_pred             HhhccCCceEEEecccHh
Confidence            4   58999999998543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.89  E-value=8.1e-06  Score=71.92  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCC-C---C
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQ-P---N  297 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~-p---~  297 (375)
                      .+.+++||++.|||.|.+ |+.++.+|..-|+.|..+.++.              .++.+.+++||+|+..++. +   +
T Consensus        41 ~~~~l~g~tvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~  119 (191)
T d1gdha1          41 VGEKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY  119 (191)
T ss_dssp             CBCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ccceecccceEEeecccc-hHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhh
Confidence            356789999999999996 9999999999999999886542              3688999999999988873 2   4


Q ss_pred             cccCC---CcCCCcEEEEeeec
Q 017184          298 MVRGS---WIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ~I~~~---~vk~gavVIDvgin  316 (375)
                      +|+.+   .+|+|+++|+++--
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCG
T ss_pred             eecHHHhhCcCCccEEEecCCc
Confidence            67654   56899999999844

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.80  E-value=1.5e-05  Score=67.13  Aligned_cols=71  Identities=25%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-----------------------------CCCHHhhccCCcEEEEc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-----------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-----------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      .|+++|||+|.+ |.++|..|.+.|.+|++..+.                             +.++.+.++++|+||.+
T Consensus         1 sk~iaIiGaG~~-G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            489999999886 999999999999999999764                             24678899999999999


Q ss_pred             cCCCCc---cc--CCCcCCCcEEEEe
Q 017184          293 VGQPNM---VR--GSWIKPGAVIIDV  313 (375)
Q Consensus       293 vG~p~~---I~--~~~vk~gavVIDv  313 (375)
                      ++....   ++  ..+++++.+|+..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            986542   11  3478888888754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.79  E-value=3.7e-06  Score=69.97  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------------CHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------------NPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------------~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .+|+|+|||+|.+ |+++|..|.++|.+|++++|+..                       .+.+.+..+|++|++++...
T Consensus         1 ~~K~IliiGaG~~-G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           1 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            4799999999885 99999999999999999998721                       23456788899998876432


Q ss_pred             c--ccCCCcCCCcEEEEeeecC
Q 017184          298 M--VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       298 ~--I~~~~vk~gavVIDvgin~  317 (375)
                      .  +.....+.+..++|+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVS  101 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCC
T ss_pred             hhHHHHHHHhhccceeecccCc
Confidence            1  2334456677888887653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1.3e-05  Score=62.08  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++||+|+|+|.|.+ |+.+|.+|.++|+.|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCc
Confidence            689999999999998 9999999999999999998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.71  E-value=2.3e-05  Score=66.06  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=59.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc----c-cCC--
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM----V-RGS--  302 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~----I-~~~--  302 (375)
                      ||-|||.|.+ |.++|..|++.|.+|++++++.              .+..+.++++|+||++++.+.-    + ..+  
T Consensus         2 kIgiIGlG~M-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           2 KVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             EEEEEehhHH-HHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            6899999986 9999999999999999998863              3567889999999999986542    2 122  


Q ss_pred             --CcCCCcEEEEeeecC
Q 017184          303 --WIKPGAVIIDVGINP  317 (375)
Q Consensus       303 --~vk~gavVIDvgin~  317 (375)
                        ..++|.++||++...
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence              357899999998653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=3.2e-05  Score=64.17  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEc-CCcccHHHHHHHHhhCCCeEEEEcCCCC-CHHhhccCCcEEEEccCCCCc---c--cCCCcCCCcEEE
Q 017184          239 DIKGKRAVVIG-RSNIVGMPAALLLQREDATVSIVHSRTK-NPEEITRQADIIISAVGQPNM---V--RGSWIKPGAVII  311 (375)
Q Consensus       239 ~l~GK~vvVIG-rs~~VGkpla~lL~~~gAtVtv~hs~t~-~L~~~l~~ADIVIsAvG~p~~---I--~~~~vk~gavVI  311 (375)
                      +..=|+|.||| .|.+ |.+++..|.+.|.+|+++++... ..++....+|+++.++.....   +  -.+.++++++++
T Consensus         6 ~~~~~kI~iIGg~G~m-G~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iii   84 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLA   84 (152)
T ss_dssp             CTTCCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEE
T ss_pred             CCCCCeEEEEcCCCHH-HHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEE
Confidence            44568999999 6775 99999999999999999998764 456678999999999986542   1  124568899999


Q ss_pred             Eeeec
Q 017184          312 DVGIN  316 (375)
Q Consensus       312 Dvgin  316 (375)
                      |++..
T Consensus        85 D~~Sv   89 (152)
T d2pv7a2          85 DLTSV   89 (152)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            99853

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=3.3e-05  Score=65.25  Aligned_cols=73  Identities=19%  Similarity=0.376  Sum_probs=60.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC--------------CCCHHhhccCCcEEEEccCCCCc----c-cC--
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITRQADIIISAVGQPNM----V-RG--  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~--------------t~~L~~~l~~ADIVIsAvG~p~~----I-~~--  301 (375)
                      |+|-+||-|.+ |.++|..|+++|.+|++++++              ..++.+.++++|+|++++..+.-    + ..  
T Consensus         2 ~kIg~IGlG~M-G~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           2 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CEEEEEEEHHH-HHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            68999999986 999999999999999999886              24678999999999999986541    1 11  


Q ss_pred             --CCcCCCcEEEEeeec
Q 017184          302 --SWIKPGAVIIDVGIN  316 (375)
Q Consensus       302 --~~vk~gavVIDvgin  316 (375)
                        ..+++|.++||++..
T Consensus        81 ~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHHHSCTTCEEEECSCC
T ss_pred             ccccCCCCCEEEECCCC
Confidence              246889999999854

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.43  E-value=4.3e-05  Score=64.10  Aligned_cols=71  Identities=21%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------CHHhhccCCcEEEEccCCCC---ccc--CCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQPN---MVR--GSW  303 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------~L~~~l~~ADIVIsAvG~p~---~I~--~~~  303 (375)
                      |+.|||.|.+ |..+|..|.+.|.+|+.++++..               +..+.+++||+||.+++...   .+.  .+.
T Consensus         2 kI~iIG~G~m-G~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             EEEEEeecHH-HHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            6899999885 99999999999999999987621               23467899999999996321   121  256


Q ss_pred             cCCCcEEEEeee
Q 017184          304 IKPGAVIIDVGI  315 (375)
Q Consensus       304 vk~gavVIDvgi  315 (375)
                      ++++.+|+|++.
T Consensus        81 l~~~~iv~~~~s   92 (165)
T d2f1ka2          81 LSPTAIVTDVAS   92 (165)
T ss_dssp             SCTTCEEEECCS
T ss_pred             cccccceeeccc
Confidence            889999999973

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=0.00012  Score=61.20  Aligned_cols=70  Identities=16%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC---------------CCCHHhhccCCcEEEEccCCCCcccC--CCcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------TKNPEEITRQADIIISAVGQPNMVRG--SWIKP  306 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~---------------t~~L~~~l~~ADIVIsAvG~p~~I~~--~~vk~  306 (375)
                      |+.+||.|.+ |.+++..|.+.|.+|++++++               +.+.++.++++|+||.++. |..+..  +.+++
T Consensus         2 kIg~IG~G~m-G~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSCC
T ss_pred             EEEEEeccHH-HHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhhccc
Confidence            6899999996 999999999999999999876               2467788999999999984 553211  34678


Q ss_pred             CcEEEEeee
Q 017184          307 GAVIIDVGI  315 (375)
Q Consensus       307 gavVIDvgi  315 (375)
                      +.++|++.-
T Consensus        80 ~~~iis~~a   88 (152)
T d2ahra2          80 KQPIISMAA   88 (152)
T ss_dssp             CSCEEECCT
T ss_pred             ceeEecccc
Confidence            888988863

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.36  E-value=0.00019  Score=63.54  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHH----HhCC-CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhc-c
Q 017184          224 CTPKGCIELLH----RYGF-DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEIT-R  284 (375)
Q Consensus       224 cT~~gvi~lL~----~~~i-~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l-~  284 (375)
                      +|+.|+.+.++    +.+. +|+||+|+|-|.|+ ||+.++.+|.+.|++|+++.....             +.++.+ .
T Consensus         4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~-VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~   82 (201)
T d1c1da1           4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST   82 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccc
Confidence            57777765555    4576 79999999999999 599999999999999999976531             233443 4


Q ss_pred             CCcEEEEccCCCCcccCCCcCC--CcEEEEeeecCC
Q 017184          285 QADIIISAVGQPNMVRGSWIKP--GAVIIDVGINPV  318 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~~~~vk~--gavVIDvgin~~  318 (375)
                      ++||++-|+. .+.|+.+.++.  -.+|+.-+-+|.
T Consensus        83 ~~DI~iPcA~-~~~I~~~~a~~i~ak~i~e~AN~p~  117 (201)
T d1c1da1          83 PCDVFAPCAM-GGVITTEVARTLDCSVVAGAANNVI  117 (201)
T ss_dssp             CCSEEEECSC-SCCBCHHHHHHCCCSEECCSCTTCB
T ss_pred             cceeeecccc-cccccHHHHhhhhhheeeccCCCCc
Confidence            7899885543 34565543321  234554443443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=0.00015  Score=57.54  Aligned_cols=59  Identities=14%  Similarity=0.228  Sum_probs=45.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-CCH-----------------HhhccCCcEEEEccCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNP-----------------EEITRQADIIISAVGQPN  297 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-~~L-----------------~~~l~~ADIVIsAvG~p~  297 (375)
                      ++++||+|+|||.|.+ |...+..|++.||.|++..... +++                 .+.+..+|+|+.+++.+.
T Consensus         8 l~l~~k~vlVvG~G~v-a~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EEeCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH
Confidence            5799999999999995 9999999999999999985432 111                 234566777777776653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00011  Score=62.48  Aligned_cols=95  Identities=21%  Similarity=0.366  Sum_probs=70.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHH
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPE  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~  280 (375)
                      ..+|.+.-++..+++..---.|.+|+|+|+|. ||..+++++...|| +|+++.++                   ..+..
T Consensus         8 ~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~-iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~   86 (182)
T d1vj0a2           8 MAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVE   86 (182)
T ss_dssp             HHTTHHHHHHHHHHTCSSCCBTCEEEEECCSH-HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHH
T ss_pred             HhhcHHHHHHHHHHHHhCCCCCCEEEEECCCc-cchhheecccccccccccccccccccccccccccceEEEeccccchH
Confidence            45787777788887775545799999999976 59999999999998 78887543                   12222


Q ss_pred             hh-------c--cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          281 EI-------T--RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~-------l--~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +.       .  +-+|+||.++|.+..+.  -+.+++|..++=+|+.
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence            21       1  23899999999987543  3677888888888854

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00015  Score=57.45  Aligned_cols=69  Identities=12%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCccccchh
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNI  209 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~  209 (375)
                      .-+.++++.|+++.|..++  +++++|.+.++.+.+ .++.|++|++|+++  ..-++++.+++  ++..+..+|.
T Consensus        21 ihn~~f~~~gi~~~Y~~~~--v~~~~l~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~--~a~~igAvNt   89 (102)
T d1vi2a2          21 MQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKA-LKMRGTGVSMPNKQ--LACEYVDELTP--AAKLVGAINT   89 (102)
T ss_dssp             HHHHHHHHTTCSEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTSTT--GGGGGCSEECH--HHHHHTCCSE
T ss_pred             HHHHHHHHcCCCcEEeeEe--eCchHHHHHHHHhhh-hccchhhhhhHHHH--HHHHhcccCCH--HHHhhCcEEE
Confidence            3467899999999999885  566788888888876 47999999999997  33445555555  3333455553

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00042  Score=59.49  Aligned_cols=57  Identities=14%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ..|||+|+|+++-+|+.++..|+++|.+|++..|+.                     .++.+.++.+|+||+++|...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~   79 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN   79 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCC
Confidence            468999999998899999999999999999987652                     134577899999999988543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00036  Score=62.52  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+||+++|.|++.-+|+.++..|+++|++|.++.++.
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999999988889999999999999999998763

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.02  E-value=0.00045  Score=58.29  Aligned_cols=56  Identities=21%  Similarity=0.274  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCC--------------------------CCCHHhhccCCcEEEEcc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSR--------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~--------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      +-+|++|||+|. ||.++|.+|...+ +++.+++.+                          +.+.++.++.|||||.++
T Consensus         6 k~~KI~IIGaG~-VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            568999999977 6999999888877 588887643                          134567889999999999


Q ss_pred             CCCC
Q 017184          294 GQPN  297 (375)
Q Consensus       294 G~p~  297 (375)
                      |.|.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            8764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.01  E-value=0.00031  Score=59.95  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-------------------CCH
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-------------------KNP  279 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-------------------~~L  279 (375)
                      .++||.-.-.+..++..++. .|.+|+|+|.|++ |...++++...|+ .|+++.++.                   .++
T Consensus         7 ~~l~~~~~ta~~a~~~a~~~-~g~~VlI~GaG~v-Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~   84 (174)
T d1jqba2           7 VMITDMMTTGFHGAELADIE-MGSSVVVIGIGAV-GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHI   84 (174)
T ss_dssp             HTTTTHHHHHHHHHHHTTCC-TTCCEEEECCSHH-HHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCH
T ss_pred             HHhhhHHHHHHHHHHHhCCC-CCCEEEEEcCCcc-hhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhH
Confidence            35666555556667776654 5899999999874 9999999999998 688776541                   222


Q ss_pred             H----hhc--cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          280 E----EIT--RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       280 ~----~~l--~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                      .    +.+  +-+|+||-++|.+..+.  -+.++++-.++-+|...
T Consensus        85 ~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          85 EDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             HHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            2    222  23899999999987653  35789988888899754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00027  Score=58.57  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      +.++||+|+|||.|. ||.--+..|++.||.||++.
T Consensus         9 ~~l~gkrvLViGgG~-va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1           9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEE
T ss_pred             eeeCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEe
Confidence            568999999999999 49999999999999999995

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00048  Score=61.15  Aligned_cols=57  Identities=28%  Similarity=0.423  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------C---HHhhccCCcEEEEccCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------N---PEEITRQADIIISAVGQP  296 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------~---L~~~l~~ADIVIsAvG~p  296 (375)
                      |+||+|+|.|++.-+|+.++..|+++|++|.++.++.+                +   +.+...+-|++|+.+|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            79999999999888899999999999999999987621                1   224456677777777754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00054  Score=61.31  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      ..|+||+++|.|++.-+|+++|..|+++|++|.++.++..
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4689999999999998999999999999999999988643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.92  E-value=0.00032  Score=60.97  Aligned_cols=55  Identities=25%  Similarity=0.358  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------CCCHHhhccCCcEEEEc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      +=++++|||+|.. |.++|..|.+.|.+|++..++                            +.++++.+++||+||.|
T Consensus         6 ~m~KI~ViGaG~w-GtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           6 YLNKAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CEEEEEEECCSHH-HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             eeceEEEECCCHH-HHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            3368999999885 999999999999899997643                            24678899999999999


Q ss_pred             cCCC
Q 017184          293 VGQP  296 (375)
Q Consensus       293 vG~p  296 (375)
                      ++..
T Consensus        85 vPs~   88 (189)
T d1n1ea2          85 IPTQ   88 (189)
T ss_dssp             SCHH
T ss_pred             CcHH
Confidence            9864

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00018  Score=56.89  Aligned_cols=65  Identities=9%  Similarity=0.057  Sum_probs=49.3

Q ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCcc
Q 017184          135 KKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGF  204 (375)
Q Consensus       135 k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl  204 (375)
                      -+.++++.|+++.|..++  ++.+++.+.++.+.+ .++.|++|++|+++  ...++++.+++ .+.+.++
T Consensus        20 hn~~~~~~gi~~~y~~~~--v~~~~~~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~~a~~igAv   85 (101)
T d1p77a2          20 QNKLAAQTHQTMEYIAKL--GDLDAFEQQLLAFFE-EGAKGCNITSPFKE--RAYQLADEYSQRAKLAEAC   85 (101)
T ss_dssp             HHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCC
T ss_pred             HHHHHHHcCCCccccccc--CCHHHHHHHHHHHHh-ccccceeeccHHHH--HHHHHhccCCHHHHHcCee
Confidence            357899999999999885  566788899998876 57999999999986  33455555555 4555544

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00067  Score=60.57  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC-----------------------HHhhccCCcEEEEccC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN-----------------------PEEITRQADIIISAVG  294 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~-----------------------L~~~l~~ADIVIsAvG  294 (375)
                      -+|+||+++|.|++.-+|+.++..|+++|++|.++.++...                       ..+....-|++|+.+|
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            36899999999999888999999999999999999876421                       1233446799998888


Q ss_pred             C
Q 017184          295 Q  295 (375)
Q Consensus       295 ~  295 (375)
                      .
T Consensus        83 ~   83 (237)
T d1uzma1          83 L   83 (237)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00053  Score=61.73  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+||.++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999888999999999999999999775

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.79  E-value=0.00042  Score=58.87  Aligned_cols=75  Identities=19%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC----------------------CHHhhccCCcEEEEccCCCCcc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----------------------NPEEITRQADIIISAVGQPNMV  299 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~----------------------~L~~~l~~ADIVIsAvG~p~~I  299 (375)
                      -++|-+||-|.+ |.++|..|++.|.+|++++++..                      ++.+.+..+|++|..+....-+
T Consensus         2 ~~nIg~IGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence            368999999986 99999999999999999988632                      2346678889999888765422


Q ss_pred             ---c---CCCcCCCcEEEEeeecC
Q 017184          300 ---R---GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ---~---~~~vk~gavVIDvgin~  317 (375)
                         .   .+.+++|.++||.+...
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHHhccccCcEEEecCcch
Confidence               1   13568899999998543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.79  E-value=0.00098  Score=59.98  Aligned_cols=38  Identities=13%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+||.|+|.|++.-+|+.+|..|+++||+|+++.++
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999999878999999999999998888554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.78  E-value=0.00049  Score=57.42  Aligned_cols=73  Identities=12%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCCC----------------CH-HhhccCCcEEEEccCCCC---ccc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRTK----------------NP-EEITRQADIIISAVGQPN---MVR  300 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t~----------------~L-~~~l~~ADIVIsAvG~p~---~I~  300 (375)
                      |++.|||.|.+ |..+|..|.+.|.  +|+.++++.+                +. .....++|+||.+++...   .+.
T Consensus         2 k~I~IIG~G~m-G~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHH-HHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            68999999886 9999999999884  6787776521                11 233468999999998432   222


Q ss_pred             --CCCcCCCcEEEEeeec
Q 017184          301 --GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       301 --~~~vk~gavVIDvgin  316 (375)
                        .+.++++.+|+|++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence              2457889999999954

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00061  Score=60.98  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+||.|+|.|++.-+|+.+|..|+++|++|.+++++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999999999999999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0015  Score=54.56  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC--------------------HHh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--------------------PEE  281 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~--------------------L~~  281 (375)
                      ++|-..-++..|++.++. .|.+|+|+|.|+ ||...++++...||.|++..+....                    ...
T Consensus        12 l~Cag~Tay~al~~~~~~-~G~~VlI~GaG~-vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~   89 (168)
T d1uufa2          12 LLCAGITTYSPLRHWQAG-PGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA   89 (168)
T ss_dssp             GGTHHHHHHHHHHHTTCC-TTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             HHhHHHHHHHHHHHhCCC-CCCEEEEeccch-HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHH
Confidence            356322335556665553 599999999977 6999999999999988776544211                    123


Q ss_pred             hccCCcEEEEccCCCCcc--cCCCcCCCcEEEEeeecC
Q 017184          282 ITRQADIIISAVGQPNMV--RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~I--~~~~vk~gavVIDvgin~  317 (375)
                      ..+.+|++|.++|.+..+  --++++++-.++-+|...
T Consensus        90 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          90 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             hcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            446789999999987754  336788888888888653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0022  Score=53.61  Aligned_cols=94  Identities=18%  Similarity=0.281  Sum_probs=65.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------------C-HH
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------------N-PE  280 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------------~-L~  280 (375)
                      +.|...-.+..|++.++ -.|.+|+|+|.|. +|..+++++...|++|+++.++..                    + .+
T Consensus         9 l~cag~Ta~~al~~~~~-~~g~~vlI~GaG~-vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~   86 (168)
T d1piwa2           9 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE   86 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             HHHHHHHHHHHHHHhCc-CCCCEEEEECCCC-cchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHH
Confidence            35644445666777665 3699999999976 599999988889999988765421                    2 22


Q ss_pred             hhccCCcEEEEccCCCCc--cc--CCCcCCCcEEEEeeecC
Q 017184          281 EITRQADIIISAVGQPNM--VR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       281 ~~l~~ADIVIsAvG~p~~--I~--~~~vk~gavVIDvgin~  317 (375)
                      +.....|.+|.++|.+.-  +.  -+.++++-.++-+|...
T Consensus        87 ~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          87 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc
Confidence            345567888888776542  22  24567877788888643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00059  Score=60.40  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=39.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHHhhc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT  283 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~~~l  283 (375)
                      +|+||.++|.|++.-+|+.++..|+++|++|.++.++...+++..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            589999999999998999999999999999999998876665443

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.00015  Score=58.22  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCcc
Q 017184          136 KKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGF  204 (375)
Q Consensus       136 ~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl  204 (375)
                      ++.+++.|++++|+.++  +.++++.+.++.+.+ .++.|++|++|+++  +.-.+++.+++ .+.+.++
T Consensus        31 n~~~~~~gi~~~y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~~~~~~d~~s~~a~~igav   95 (110)
T d1nvta2          31 NAAFKDKGLNYVYVAFD--VLPENLKYVIDGAKA-LGIVGFNVTIPHKI--EIMKYLDEIDKDAQLIGAV   95 (110)
T ss_dssp             HHHHHHTTCCEEEEEEE--CCGGGGGGHHHHHHH-HTCCEEEECTTSTT--GGGGGCSEECHHHHHHTCC
T ss_pred             HHHHHHcCCcEEEeecc--cCHHHHHHHHHhhcc-cCcchhheehHHHH--HHHHHhccCCHHHHHhCcE
Confidence            67899999999999885  566677777777765 37999999999997  33456666666 4544443

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00025  Score=56.01  Aligned_cols=66  Identities=9%  Similarity=0.113  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCc-ccccCcc
Q 017184          134 NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM-EKDVDGF  204 (375)
Q Consensus       134 ~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p-~KDVDGl  204 (375)
                      .=+.++++.|++..|..+.  +.++++.+.++.+.+ .++.|++|++|+++  ...++++.+++ .+.+.++
T Consensus        19 ihn~~~~~~gi~~~y~~~~--v~~~~~~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~~a~~igAv   85 (101)
T d1nyta2          19 IHQQFAQQLNIEHPYGRVL--APINDFINTLNAFFS-AGGKGANVTVPFKE--EAFARADELTERAALAGAV   85 (101)
T ss_dssp             HHHHHHHHHTCCCCEEEEE--CCTTCHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCC
T ss_pred             HHHHHHHHcCCcchhhhhc--CChHhHHHHHHHhhh-ccchhheeehHHHH--HHHHHhccCChHHHHhCcE
Confidence            3467899999999998874  566788899998876 57999999999985  33444455555 4444444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.70  E-value=0.00036  Score=63.15  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++|+||+|+|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999998889999999999999999998763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00082  Score=60.14  Aligned_cols=38  Identities=29%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ||+||.++|.|++.-+|+.++..|+++|++|.++.++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999999998889999999999999999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.68  E-value=0.00087  Score=55.40  Aligned_cols=72  Identities=19%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCcc---cCCCcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNMV---RGSWIKP  306 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~I---~~~~vk~  306 (375)
                      ||.|||.|.+ |.+++..|++.|.+|+++++..              .+..+.++++|+||+++......   ..-.-..
T Consensus         2 kIgiIG~G~m-G~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEcHHHH-HHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            6899999996 9999999999999999987653              24567889999999999854321   1000122


Q ss_pred             CcEEEEeeec
Q 017184          307 GAVIIDVGIN  316 (375)
Q Consensus       307 gavVIDvgin  316 (375)
                      +.++||+...
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            5789998743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.67  E-value=0.0014  Score=56.83  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=44.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC----------------------------------CCCHHhhccCCcEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR----------------------------------TKNPEEITRQADII  289 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~----------------------------------t~~L~~~l~~ADIV  289 (375)
                      +|.|||.|- ||.|+|..|+++|.+|+..+..                                  +.++.+.++++|++
T Consensus         2 kI~ViGlG~-vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGY-VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCH-hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999988 5999999999999999988542                                  23567788999999


Q ss_pred             EEccCCCC
Q 017184          290 ISAVGQPN  297 (375)
Q Consensus       290 IsAvG~p~  297 (375)
                      +.+++.|.
T Consensus        81 ~i~VpTP~   88 (202)
T d1mv8a2          81 FICVGTPS   88 (202)
T ss_dssp             EECCCCCB
T ss_pred             EEecCccc
Confidence            99999873

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.0008  Score=53.15  Aligned_cols=81  Identities=15%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhh
Q 017184          115 PGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNA  194 (375)
Q Consensus       115 P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~  194 (375)
                      .++.+-+.| +|.|.+ =+.=+++++++|++++|..++.    +++.+.++.+.+ .++.|++|++|+++..  .++++.
T Consensus         6 t~~~~~i~g-~P~s~S-P~ihn~~~~~~gi~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d~   76 (102)
T d1npya2           6 TQLCMSLSG-RPSNFG-TTFHNYLYDKLGLNFIYKAFTT----QDIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDE   76 (102)
T ss_dssp             CEEEEEECS-SCCSHH-HHHHHHHHHHHTCCEEEEEECC----SCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSE
T ss_pred             CEEEEEEcC-CcccCC-HHHHHHHHHHcCCCeEEeeEec----ccHHHHHHHHhc-cccceeEEehhHHHHH--HHHhhh
Confidence            345444444 567764 3466889999999999999964    246667777765 4799999999999843  456666


Q ss_pred             CCc-ccccCcc
Q 017184          195 VSM-EKDVDGF  204 (375)
Q Consensus       195 I~p-~KDVDGl  204 (375)
                      +++ .+.+.++
T Consensus        77 ~s~~a~~igAv   87 (102)
T d1npya2          77 IHPSAQAIESV   87 (102)
T ss_dssp             ECHHHHTTTCC
T ss_pred             CChhhhhcCcE
Confidence            666 4554443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00062  Score=57.17  Aligned_cols=94  Identities=11%  Similarity=0.034  Sum_probs=64.9

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEI  282 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~  282 (375)
                      +||++..+...|.+..---.|++|+|.|+++.||..+.+++...||+|++..++                   ++|+.+.
T Consensus         9 ~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~   88 (179)
T d1qora2           9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVER   88 (179)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHH
Confidence            477777777777655332359999999999988999999999999998887443                   3444433


Q ss_pred             c------cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeee
Q 017184          283 T------RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       283 l------~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgi  315 (375)
                      +      +..|+|+.++|.+.+ -..+.++++-.++-+|.
T Consensus        89 v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeeccc
Confidence            2      346888888886543 23345666555555553

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.63  E-value=0.00059  Score=61.38  Aligned_cols=43  Identities=14%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE  280 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~  280 (375)
                      .+|+||.|+|.|++.-+|+.+|..|+++||+|+++.++..+++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   47 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV   47 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4789999999999998899999999999999999988765543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00082  Score=55.09  Aligned_cols=69  Identities=14%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC---------------------CHHhhccCCcEEEEccCCCCc---c
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK---------------------NPEEITRQADIIISAVGQPNM---V  299 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~---------------------~L~~~l~~ADIVIsAvG~p~~---I  299 (375)
                      ||+|||.|.+ |..++..|++.|.+|+++.|...                     +..+.+..+|+||.++..+..   +
T Consensus         2 kI~IiGaG~i-G~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEECcCHH-HHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            7999999775 99999999999999999976531                     234667899999999987653   1


Q ss_pred             c--CCCcCCCcEEEEe
Q 017184          300 R--GSWIKPGAVIIDV  313 (375)
Q Consensus       300 ~--~~~vk~gavVIDv  313 (375)
                      +  ..++.++..|+.+
T Consensus        81 ~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          81 KSLASTLPVTTPILLI   96 (167)
T ss_dssp             HHHHTTSCTTSCEEEE
T ss_pred             HhhccccCcccEEeec
Confidence            1  2466778877776

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.59  E-value=0.00046  Score=62.35  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+||.++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999888999999999999999999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.59  E-value=0.0019  Score=53.90  Aligned_cols=54  Identities=20%  Similarity=0.443  Sum_probs=42.3

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC-----------------------CCCHHhhccCCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR-----------------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~-----------------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ||+|||++|.||..+|++|..+|.  ++.+++.+                       +.+.++.++.|||||.+.|.|.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            799999855579999999998884  56666432                       2356788999999999999753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.00057  Score=57.52  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEI  282 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~  282 (375)
                      +||.+..++..|.+..---+|++|+|.|+++.||..+++++...|++|.++-+.                   .+++.+.
T Consensus         6 l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~   85 (183)
T d1pqwa_           6 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADE   85 (183)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHH
Confidence            356556666666555433458999999986778999999999999988776432                   3344443


Q ss_pred             c------cCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          283 T------RQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 l------~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                      +      +..|+|+.++|...+ .--+.++++..+|.+|..
T Consensus        86 v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             HHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCG
T ss_pred             HHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccC
Confidence            3      458999999996433 123577888889999854

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.58  E-value=0.00094  Score=56.41  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-----------------C-HH--h
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-----------------N-PE--E  281 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-----------------~-L~--~  281 (375)
                      +||...-++..|++.++ -.|++|+|.|+++.||..+.+++...|++|+.+.++..                 + ..  .
T Consensus         9 l~~~~~TA~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~   87 (171)
T d1iz0a2           9 FPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK   87 (171)
T ss_dssp             SHHHHHHHHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhh
Confidence            35655556667776543 47999999998777899999999999999887755421                 1 11  1


Q ss_pred             hccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          282 ITRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                      .-+.+|+||.++|. .+ -.-++++++-.++.+|..
T Consensus        88 ~~~g~D~v~d~~G~-~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          88 AWGGLDLVLEVRGK-EVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             HTTSEEEEEECSCT-THHHHHTTEEEEEEEEEC---
T ss_pred             ccccccccccccch-hHHHHHHHHhcCCcEEEEeCC
Confidence            23558999998883 23 123578888888888853

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.58  E-value=0.0014  Score=58.93  Aligned_cols=38  Identities=24%  Similarity=0.473  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .|+||.++|.|++.-+|+.++..|+++||+|.+++++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999999988889999999999999999998864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.58  E-value=0.0012  Score=58.89  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.++..|+++|++|.++.++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998878999999999999999999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.56  E-value=0.00074  Score=55.86  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CC---
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KN---  278 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~---  278 (375)
                      -+||+...++..|++.++. .|.+|+|.|.|. +|..++.++...|++|+++.++.                   .+   
T Consensus         8 ~l~~~~~Ta~~al~~~~~~-~g~~vlv~G~G~-iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~   85 (168)
T d1rjwa2           8 PIFCAGVTTYKALKVTGAK-PGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK   85 (168)
T ss_dssp             GGGTHHHHHHHHHHHHTCC-TTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCEEEEeeccc-chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhh
Confidence            4588877778888888765 589999999977 59999999999999988875431                   22   


Q ss_pred             -HHhhccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          279 -PEEITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       279 -L~~~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                       +.+.++..|.+|..++.+..+.  -+.++++..++-+|...
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEeccccc
Confidence             3344566677776666655432  24568888888888653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0018  Score=58.01  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.52  E-value=0.00068  Score=61.30  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +|+||.++|.|++.-+|+.+|..|+++||+|.++.++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999998889999999999999999998763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0034  Score=52.34  Aligned_cols=86  Identities=22%  Similarity=0.397  Sum_probs=62.6

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-------------------CCHHhhc------
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-------------------KNPEEIT------  283 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-------------------~~L~~~l------  283 (375)
                      +..+++.++. .|.+|+|+|.|. +|..+++++...|+ .|+++.++.                   .+..+..      
T Consensus        16 ~~a~~~~~~~-~gd~VlI~G~G~-iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          16 IHACRRGGVT-LGHKVLVCGAGP-IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHHHHTCC-TTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCC-CCCEEEEECCCc-cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            4666776653 588999999977 59999999999999 688875541                   2222211      


Q ss_pred             --cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          284 --RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       284 --~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                        ..+|+||-++|.+..+.  -+++++|-.++=+|...
T Consensus        94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence              36899999999887543  35788888777788654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.00039  Score=57.17  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=45.1

Q ss_pred             EEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCCCCc--ccCCCcCCCcE
Q 017184          246 VVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQPNM--VRGSWIKPGAV  309 (375)
Q Consensus       246 vVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~p~~--I~~~~vk~gav  309 (375)
                      -+||.|++ |++++..|.+.+..+.|++|+.              .++.+.++++|+||.+++-..+  +-.+.-+++.+
T Consensus         3 gfIG~G~m-g~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~i   81 (153)
T d2i76a2           3 NFVGTGTL-TRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDAV   81 (153)
T ss_dssp             EEESCCHH-HHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSCC
T ss_pred             EEEeCcHH-HHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhccccee
Confidence            47999995 9999998866544446777652              3566789999999999975432  22333357899


Q ss_pred             EEEeeec
Q 017184          310 IIDVGIN  316 (375)
Q Consensus       310 VIDvgin  316 (375)
                      +||+.-.
T Consensus        82 vi~~s~~   88 (153)
T d2i76a2          82 LVHCSGF   88 (153)
T ss_dssp             EEECCSS
T ss_pred             eeecccc
Confidence            9998743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.49  E-value=0.0025  Score=52.96  Aligned_cols=86  Identities=19%  Similarity=0.303  Sum_probs=63.2

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHH---hhc--
Q 017184          230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPE---EIT--  283 (375)
Q Consensus       230 i~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~---~~l--  283 (375)
                      ++.+++.++ -.|.+|+|+|.|. +|...++++...|++|+++.++.                     .+..   +.+  
T Consensus        16 ~~a~~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAGV-QLGTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEEcccc-cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            566777664 3588999999876 59999999999999999886541                     1111   111  


Q ss_pred             ---cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          284 ---RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       284 ---~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                         ..+|+||-++|.+..+.  -++++++-.++=+|...
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence               35899999999887543  26789988888888654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.48  E-value=0.0013  Score=59.14  Aligned_cols=37  Identities=30%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998888999999999999999999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0015  Score=58.63  Aligned_cols=39  Identities=23%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -.|+||.++|.|++.-+|+.+|..|+++|++|.++.++.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999988889999999999999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.47  E-value=0.0012  Score=54.76  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-------------------CCHH-
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------------KNPE-  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-------------------~~L~-  280 (375)
                      .+||+...++..+++.++ -.|.+|+|+|.|. ||..+++++...|++|+++.++.                   .+.. 
T Consensus         8 ~l~ca~~Ta~~al~~~~~-~~g~~VlV~GaG~-vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~   85 (166)
T d1llua2           8 PILCAGVTVYKGLKQTNA-RPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVE   85 (166)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEeeccc-cHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHH
Confidence            468877667777777665 3589999999977 59999999999999988886542                   2222 


Q ss_pred             ---hhccCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          281 ---EITRQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ---~~l~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                         +.....|.+|..++.+..+.  -+.++++-.++-+|..
T Consensus        86 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             HHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEec
Confidence               23344566666666555432  2577787777778854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.0017  Score=54.20  Aligned_cols=56  Identities=25%  Similarity=0.431  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCCC------------------------CCHHhhccCCcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSRT------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      .++||.|||+|. ||..+|+.|+.++ + ++.+++.+.                        .+-.+.+++||+||.++|
T Consensus         5 ~~~KI~IiGaG~-vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           5 GGARVVVIGAGF-VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TSCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCeEEEECcCH-HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            578999999977 6999999999887 3 688876431                        122477899999999999


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        84 ~~~   86 (148)
T d1ldna1          84 ANQ   86 (148)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            763

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.46  E-value=0.0018  Score=54.01  Aligned_cols=55  Identities=20%  Similarity=0.390  Sum_probs=42.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC------------------------CCHHhhccCCcEEEEccC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT------------------------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG  294 (375)
                      +.+||+|||+|. ||.++|..|+.+|  .++.+++...                        .+. +.+++|||||.++|
T Consensus         4 ~~~KI~IIGaG~-VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGA-VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            457999999977 6999999999988  4799887541                        233 56799999999999


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .|.
T Consensus        82 ~~~   84 (146)
T d1ez4a1          82 APQ   84 (146)
T ss_dssp             C--
T ss_pred             ccc
Confidence            763

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.46  E-value=0.0012  Score=59.85  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.|+|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999876

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.44  E-value=0.00065  Score=61.61  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+||.|+|.|+++-+|+.+|..|+++|++|+++.++.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            478999999999888889999999999999999998873

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.43  E-value=0.0017  Score=54.01  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHH
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPE  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~  280 (375)
                      .+||........+++.++ -.|.+|+|+|.++.+|..+++++...|+ +|+++.++                   ..+..
T Consensus         8 ~l~c~~~Ta~~al~~~~~-~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~   86 (170)
T d1jvba2           8 PLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPL   86 (170)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHH
Confidence            468876666777777654 3588999999866679999988888885 88877543                   12332


Q ss_pred             hhc------cCCcEEEEccCCCCccc--CCCcCCCcEEEEeeec
Q 017184          281 EIT------RQADIIISAVGQPNMVR--GSWIKPGAVIIDVGIN  316 (375)
Q Consensus       281 ~~l------~~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin  316 (375)
                      +.+      ...|++|-++|.+..+.  -+++++|-.++=+|..
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccc
Confidence            222      34899999999876543  3578898888888865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.42  E-value=0.0014  Score=55.87  Aligned_cols=53  Identities=15%  Similarity=0.273  Sum_probs=44.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-----------------------------CCCHHhhccCCcEEEEccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR-----------------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-----------------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      +|.|||+|.. |.++|..|.+.|.+|++..|.                             +.++.+.+++||+||.|++
T Consensus         2 kI~ViGaG~~-GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            7999999885 999999999999999997542                             2466788999999999998


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      ...
T Consensus        81 s~~   83 (180)
T d1txga2          81 TDG   83 (180)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.0018  Score=58.05  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999988889999999999999999998763

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.41  E-value=0.0024  Score=53.63  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ..||+|||+|. ||.++|.+|..++ +++.+++.+.                         .+..+.+++||+||.++|.
T Consensus         3 ~~KI~IIGaG~-VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            36899999876 6999999998888 4777776431                         1345788999999999997


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        82 ~~   83 (150)
T d1t2da1          82 TK   83 (150)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.36  E-value=0.0019  Score=53.47  Aligned_cols=54  Identities=24%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      +||.|||+|. ||.++|.+|+.++ +++...+...                         .+-.+.+++||+||.++|.|
T Consensus         2 ~KI~IIGaG~-VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            6899999977 6999999998887 5877765331                         12235689999999999976


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        81 ~   81 (142)
T d1uxja1          81 R   81 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.36  E-value=0.00091  Score=59.67  Aligned_cols=42  Identities=26%  Similarity=0.354  Sum_probs=36.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE  280 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~  280 (375)
                      .|+||+++|.|++.-+|+.+|..|+++|++|+++.++.++++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~   43 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA   43 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            489999999999998899999999999999999987754443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.35  E-value=0.00062  Score=61.52  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .++|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            357999999999999988999999999999999999876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.34  E-value=0.0018  Score=58.26  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.++..|+++||+|.++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999888999999999999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.0017  Score=51.91  Aligned_cols=53  Identities=26%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------CC-HHh-hccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------KN-PEE-ITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------~~-L~~-~l~~ADIVIsAvG~p  296 (375)
                      |+++|+|.|.+ |+.++..|.++|..|+++....                    ++ |.+ .+.+||.||.+++..
T Consensus         1 k~~iIiG~G~~-G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            78999999985 9999999999999999986542                    11 222 267788888877753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.002  Score=57.71  Aligned_cols=38  Identities=11%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +|.||.++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999999889999999999999999998874

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.32  E-value=0.0038  Score=56.14  Aligned_cols=79  Identities=18%  Similarity=0.169  Sum_probs=57.0

Q ss_pred             cCCHHHHHHHHH----Hh--CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC--------------CH-Hh
Q 017184          223 PCTPKGCIELLH----RY--GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK--------------NP-EE  281 (375)
Q Consensus       223 PcT~~gvi~lL~----~~--~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~--------------~L-~~  281 (375)
                      +.|+.|+...++    +.  .-+|+||+|+|-|.|+ ||..++.+|.+.||.|+++.-+..              +. +-
T Consensus        14 ~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~Gn-VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~   92 (230)
T d1leha1          14 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGN-VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI   92 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCccc
Confidence            678899876554    33  4579999999999999 599999999999999998865421              11 22


Q ss_pred             hccCCcEEEEccCCCCcccCCC
Q 017184          282 ITRQADIIISAVGQPNMVRGSW  303 (375)
Q Consensus       282 ~l~~ADIVIsAvG~p~~I~~~~  303 (375)
                      ...++||++=|+. .+.|+.+.
T Consensus        93 ~~~~cDIl~PcA~-~~~I~~~~  113 (230)
T d1leha1          93 YGVTCDIFAPCAL-GAVLNDFT  113 (230)
T ss_dssp             TTCCCSEEEECSC-SCCBSTTH
T ss_pred             ccccccEeccccc-ccccChHH
Confidence            3467899885544 23455443

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.30  E-value=0.0031  Score=58.86  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh-CC-CeEEEEcCCC------------------CCHHhhccCCcEEEEccCCCC-cc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR-ED-ATVSIVHSRT------------------KNPEEITRQADIIISAVGQPN-MV  299 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~-~g-AtVtv~hs~t------------------~~L~~~l~~ADIVIsAvG~p~-~I  299 (375)
                      .-+++.|||.|.- ++.-+..|.. .. .+|.+.+++.                  .+..+.++.|||||++|.... ++
T Consensus       124 ~~~~l~iiGaG~Q-A~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~  202 (320)
T d1omoa_         124 NSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVV  202 (320)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCB
T ss_pred             CccEEEEecCccc-HHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccccc
Confidence            4578999999885 8877766654 33 3788887662                  234577899999999999765 58


Q ss_pred             cCCCcCCCcEEEEeeecC
Q 017184          300 RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       300 ~~~~vk~gavVIDvgin~  317 (375)
                      +.+|+++|+.|+=+|.+.
T Consensus       203 ~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CGGGCCTTCEEEECSCCS
T ss_pred             chhhcCCCCeEeecCCcc
Confidence            999999999999999653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.29  E-value=0.0016  Score=58.57  Aligned_cols=37  Identities=32%  Similarity=0.427  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.++..|+++|++|.++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00065  Score=57.17  Aligned_cols=94  Identities=21%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCHHhh
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEI  282 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L~~~  282 (375)
                      +||...-....|.+..---.|.+|+|.|+++.||..+.+++...|++|+++.++                   ..++.+.
T Consensus         9 l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   88 (174)
T d1yb5a2           9 IGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDK   88 (174)
T ss_dssp             THHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHH
Confidence            466666566666544322369999999986778999999999999998776433                   2333333


Q ss_pred             c------cCCcEEEEccCCCCcc-cCCCcCCCcEEEEeee
Q 017184          283 T------RQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI  315 (375)
Q Consensus       283 l------~~ADIVIsAvG~p~~I-~~~~vk~gavVIDvgi  315 (375)
                      +      +..|+|+.++|.+.+- --+.++++-.++.+|.
T Consensus        89 i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             hhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEec
Confidence            2      3379999988864321 1246788888888884

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.29  E-value=0.0021  Score=58.02  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~   40 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS   40 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6999999999998888999999999999999998775

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0029  Score=55.16  Aligned_cols=58  Identities=14%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC---------------------CCHHhhccCCcEEEEccCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT---------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ..++|+|+|.|++|.+|+.++..|+++|.  +|++..|+.                     .++.+.++.+|++|.++|.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            36789999999999999999999999884  798887752                     2455678899999999885


Q ss_pred             C
Q 017184          296 P  296 (375)
Q Consensus       296 p  296 (375)
                      .
T Consensus        91 ~   91 (232)
T d2bkaa1          91 T   91 (232)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.26  E-value=0.0024  Score=57.17  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999999888999999999999999999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.26  E-value=0.0021  Score=53.69  Aligned_cols=54  Identities=26%  Similarity=0.338  Sum_probs=41.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCCC------------------------CCHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSRT------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      |||+|||+|. ||..++..|+.+| + ++.+++...                        .+-.+.+++||+||.++|.|
T Consensus         2 kKI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCH-HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            8999999977 6999999998887 3 677775431                        01236689999999999965


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        81 ~   81 (146)
T d1hyha1          81 K   81 (146)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.0017  Score=57.70  Aligned_cols=38  Identities=32%  Similarity=0.518  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|+||.++|.|+++  =+|+.+|..|+++||+|.++.+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            589999999999863  14999999999999999888665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.26  E-value=0.0028  Score=56.60  Aligned_cols=37  Identities=30%  Similarity=0.330  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999888999999999999999999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.23  E-value=0.0034  Score=52.34  Aligned_cols=54  Identities=28%  Similarity=0.492  Sum_probs=41.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCCC-----------------------------CCHHhhccCCcEEEEc
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSRT-----------------------------KNPEEITRQADIIISA  292 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~t-----------------------------~~L~~~l~~ADIVIsA  292 (375)
                      ||+|||++|-||.++|.+|+.++ + ++.+++.+.                             .+..+.+++|||||.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            69999985557999999999988 3 777775320                             1234678899999999


Q ss_pred             cCCCC
Q 017184          293 VGQPN  297 (375)
Q Consensus       293 vG~p~  297 (375)
                      +|.|.
T Consensus        82 AG~~~   86 (145)
T d1hyea1          82 SGVPR   86 (145)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            99753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00076  Score=60.86  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP  279 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L  279 (375)
                      |+||+|+|.|+|.-+|+.+|..|+++|++|.++.|+.+++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l   51 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETL   51 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            8999999999998889999999999999999998874333

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.19  E-value=0.0018  Score=55.24  Aligned_cols=95  Identities=18%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEE-cCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH-------------------
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVI-GRSNIVGMPAALLLQREDATVSIVHSRTKNPE-------------------  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVI-Grs~~VGkpla~lL~~~gAtVtv~hs~t~~L~-------------------  280 (375)
                      -+||++.-.+..|++..---.|.+|+|+ |+++.||..+.++....||+|+..-++..+.+                   
T Consensus         8 ~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~   87 (189)
T d1gu7a2           8 TISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ   87 (189)
T ss_dssp             TCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHH
T ss_pred             HhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccc
Confidence            3578888888888876544468899998 56666799999999999999877654432211                   


Q ss_pred             -----------hh----ccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeee
Q 017184          281 -----------EI----TRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       281 -----------~~----l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgi  315 (375)
                                 +.    -+.+|+++.++|.+.+ -.-+.++++-.++.+|.
T Consensus        88 ~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2          88 NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             cchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence                       11    1237888888875543 12246788878888873

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.16  E-value=0.002  Score=57.81  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             CCCCCCCEEEEEcCC---cccHHHHHHHHhhCCCeEEEEcC
Q 017184          237 GFDIKGKRAVVIGRS---NIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs---~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .++|+||+++|.|+|   ++ |+.+|..|+++||+|+++.+
T Consensus         3 ~~~L~gK~alVTGass~~GI-G~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGY-GWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEE
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeC
Confidence            468999999999986   55 99999999999999998865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.16  E-value=0.0036  Score=51.47  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=41.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC-------------------------CCHHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT-------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t-------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      ||.|||+|. ||.+++..|+..+  -++.+++.+.                         .+..+.+++||+||.++|.|
T Consensus         2 KI~IIGaG~-VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            699999976 6999999999987  3788886542                         13357789999999999865


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        81 ~   81 (142)
T d1guza1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0043  Score=53.62  Aligned_cols=52  Identities=21%  Similarity=0.374  Sum_probs=43.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------------------------------CCCH
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------------------------------TKNP  279 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------------------------------t~~L  279 (375)
                      |+|.|||+|.+ |..+|.++++.|.+|+++.+.                                           +.++
T Consensus         5 kkvaViGaG~m-G~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHH-HHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            79999999775 999999999999999999654                                           2355


Q ss_pred             HhhccCCcEEEEccCC
Q 017184          280 EEITRQADIIISAVGQ  295 (375)
Q Consensus       280 ~~~l~~ADIVIsAvG~  295 (375)
                      .+.+++||+||=++.-
T Consensus        84 ~~a~~~ad~ViEav~E   99 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVE   99 (192)
T ss_dssp             HHHTTSCSEEEECCCS
T ss_pred             Hhhhcccceehhhccc
Confidence            6778999999988763

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.12  E-value=0.0016  Score=58.35  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+||.|+|.|++.-+|+++|..|+++|++|+++.++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            6899999999999988999999999999999987554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.08  E-value=0.0022  Score=57.35  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.++..|+++||+|.++.++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999998888999999999999999999775

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.05  E-value=0.0058  Score=51.85  Aligned_cols=57  Identities=18%  Similarity=0.370  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC------------------------CCHHhhccCCcEEEEcc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT------------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t------------------------~~L~~~l~~ADIVIsAv  293 (375)
                      +..+||.|||+|. ||..++..|..+|-  ++.+++.+.                        .+-.+.+++|||||.++
T Consensus        18 ~~~~KV~IIGaG~-VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQ-VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4568999999977 69999999999983  688876441                        12246789999999999


Q ss_pred             CCCC
Q 017184          294 GQPN  297 (375)
Q Consensus       294 G~p~  297 (375)
                      |.|.
T Consensus        97 g~~~  100 (160)
T d1i0za1          97 GVRQ  100 (160)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            9764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.99  E-value=0.0053  Score=50.80  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=39.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-----------------------CCHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-----------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-----------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      +||+|||+|. ||..++..|+.++-  ++.+++...                       ....+.+++|||||.++|.+
T Consensus         2 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGF-VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSH-HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            4799999976 59999999998873  688876432                       12246688899999888865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.98  E-value=0.0081  Score=56.77  Aligned_cols=75  Identities=16%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHh-hCC-CeEEEEcCC---------------------CCCHHhhccCCcEEEEccCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQ-RED-ATVSIVHSR---------------------TKNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~-~~g-AtVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      .-+++.|||.|.- ++.-+..+. -.+ -+|.+..++                     ..++++.++.||||++++..+.
T Consensus       127 da~~l~iiG~G~Q-A~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHH-HHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence            4578889999875 775555443 334 367777654                     2468899999999998886542


Q ss_pred             ---cccCCCcCCCcEEEEeeec
Q 017184          298 ---MVRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       298 ---~I~~~~vk~gavVIDvgin  316 (375)
                         +++.+|++||+.|.=+|.+
T Consensus       206 ~~Pv~~~~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         206 YATIITPDMLEPGMHLNAVGGD  227 (340)
T ss_dssp             EEEEECGGGCCTTCEEEECSCC
T ss_pred             CCcccchhhcCCCCEEeecccc
Confidence               6899999999999999865

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0012  Score=59.42  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +..|+||.++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         6 ~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            346899999999999888999999999999999999876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.95  E-value=0.0054  Score=50.97  Aligned_cols=54  Identities=22%  Similarity=0.380  Sum_probs=41.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC------------------------CCHHhhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT------------------------KNPEEITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t------------------------~~L~~~l~~ADIVIsAvG~p  296 (375)
                      .|+.|||+|. ||..+|+.|..++-  ++.+++.+.                        .+-.+.+++||+||.++|.|
T Consensus         2 ~Ki~IIGaG~-VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGA-VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            4799999977 69999999998883  677775431                        12235689999999999976


Q ss_pred             C
Q 017184          297 N  297 (375)
Q Consensus       297 ~  297 (375)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.94  E-value=0.0038  Score=54.99  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +||+|+|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            69999999999888999999999999999988654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.92  E-value=0.0022  Score=57.71  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+|+||.|+|.|++.-+|+.++..|+++|++|+++.++
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46899999999998888999999999999999998655

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.90  E-value=0.0031  Score=53.11  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||||+|||+|-. |...|..|.+.|.+|+|+.+.
T Consensus         1 ~KkV~IIGaG~a-GL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVS-GLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            799999999987 999999999999999999764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.90  E-value=0.0017  Score=58.50  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.|+|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0046  Score=50.97  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCCC-----------------------CCHHhhccCCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT-----------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~t-----------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      |+.|||+|. ||.+++..|+.++  .++.+++.+.                       .+..+.+++||+||.++|.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGR-VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            789999977 6999999888877  3777775431                       123466999999999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.89  E-value=0.0048  Score=54.77  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+||+++|.|+++  =+|+++|..|+++|++|+++.++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7999999999753  249999999999999999998863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.87  E-value=0.0043  Score=57.20  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+|+||.++|.|+|.=+|+.+|..|+++||+|.++.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            4689999999999998999999999999999999854

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.86  E-value=0.0013  Score=58.98  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             hCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          236 YGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       236 ~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +-+.|+||.++|.|++.-+|+.+|..|+++|++|.++.++.
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            34678999999999988889999999999999999998763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0017  Score=58.32  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.|+|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999999999999999999999999876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.80  E-value=0.0036  Score=52.64  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCe-EEEEcCC-------------------CCCHH
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSR-------------------TKNPE  280 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAt-Vtv~hs~-------------------t~~L~  280 (375)
                      .++|.....+..+.+..---.|.+|+|+|.|. +|...++++...|+. |+++.++                   .++..
T Consensus         8 pl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~-iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~   86 (174)
T d1f8fa2           8 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV   86 (174)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCH-HHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHH
Confidence            45775555555544443334699999999976 599999999888985 4454332                   23444


Q ss_pred             hhcc-----CCcEEEEccCCCCccc--CCCcCCCcEEEEeeecC
Q 017184          281 EITR-----QADIIISAVGQPNMVR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       281 ~~l~-----~ADIVIsAvG~p~~I~--~~~vk~gavVIDvgin~  317 (375)
                      +.++     .+|+||-++|.+..+.  -+.++++-.++=+|...
T Consensus        87 ~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~  130 (174)
T d1f8fa2          87 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  130 (174)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecC
Confidence            4332     2799999999876543  35678887777777643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.79  E-value=0.0033  Score=53.11  Aligned_cols=93  Identities=17%  Similarity=0.015  Sum_probs=63.7

Q ss_pred             cCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------CCCH-H--
Q 017184          223 PCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNP-E--  280 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------t~~L-~--  280 (375)
                      +|+..-....|.+..---+|.+|+|.|+++.||..++++....||+|+...++                   +.+. +  
T Consensus        11 g~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~   90 (182)
T d1v3va2          11 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEA   90 (182)
T ss_dssp             SHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHH
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHH
Confidence            45555556666655433469999999999989999999999999998876543                   1221 1  


Q ss_pred             -hh--ccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeee
Q 017184          281 -EI--TRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       281 -~~--l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgi  315 (375)
                       +.  -+..|+|+.++|.+.+ -.-+.++++..++-+|.
T Consensus        91 ~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecc
Confidence             11  1348888888885432 23456788877887874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.77  E-value=0.0023  Score=57.77  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998888999999999999999999876

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.76  E-value=0.0027  Score=52.77  Aligned_cols=76  Identities=16%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC---CeEEEEcCCC---------------CCH-HhhccCCcEEEEccCCCC--cccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT---------------KNP-EEITRQADIIISAVGQPN--MVRG  301 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g---AtVtv~hs~t---------------~~L-~~~l~~ADIVIsAvG~p~--~I~~  301 (375)
                      -+|.|||++|.||+-+..+|.+++   .++..+.+++               .++ .+...++|+++.+++...  -+-+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            479999999999999999997543   4666654442               111 244678999999987422  1334


Q ss_pred             CCcCCCcEEEEeeecCC
Q 017184          302 SWIKPGAVIIDVGINPV  318 (375)
Q Consensus       302 ~~vk~gavVIDvgin~~  318 (375)
                      ...+.|..|||.+-.+.
T Consensus        83 ~~~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          83 RARAAGCSVIDLSGALE   99 (144)
T ss_dssp             HHHHTTCEEEETTCTTT
T ss_pred             ccccCCceEEeechhhc
Confidence            45678999999987664

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0067  Score=51.38  Aligned_cols=57  Identities=18%  Similarity=0.354  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC------------------------CCHHhhccCCcEEEEcc
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT------------------------KNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t------------------------~~L~~~l~~ADIVIsAv  293 (375)
                      ++-.||.|||+|. ||..+|.+|..+|-  ++.+++.+.                        .+-.+.+++|||||.++
T Consensus        17 ~~~~KI~IIGaG~-VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGD-VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            4556899999977 69999999998873  688876441                        12246779999999999


Q ss_pred             CCCC
Q 017184          294 GQPN  297 (375)
Q Consensus       294 G~p~  297 (375)
                      |.|.
T Consensus        96 g~~~   99 (159)
T d2ldxa1          96 GARM   99 (159)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            9764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.74  E-value=0.0049  Score=52.76  Aligned_cols=92  Identities=20%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCHH------------------hh----
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE------------------EI----  282 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L~------------------~~----  282 (375)
                      |++-.++-|.+.+..-+|.+|+|-|+++-||..+.+++...|++|+.+.++....+                  +.    
T Consensus        15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~   94 (176)
T d1xa0a2          15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPL   94 (176)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------C
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHh
Confidence            45545555666677778999999999888999999999999999887766533221                  11    


Q ss_pred             -ccCCcEEEEccCCCCc-ccCCCcCCCcEEEEeeec
Q 017184          283 -TRQADIIISAVGQPNM-VRGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       283 -l~~ADIVIsAvG~p~~-I~~~~vk~gavVIDvgin  316 (375)
                       =+..|+||..+|.+.+ -.-+.+++|-.++.+|..
T Consensus        95 ~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          95 DKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCC
T ss_pred             hccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecc
Confidence             1235666666665543 122455666666666643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0022  Score=59.06  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .|+||.|+|.|++.-+|+.+|..|+++||+|.++.++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999998889999999999999999998763

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.69  E-value=0.0018  Score=58.22  Aligned_cols=37  Identities=35%  Similarity=0.490  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.|+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.63  E-value=0.0037  Score=55.15  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCC---cccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRS---NIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs---~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+||+++|.|++   ++ |+++|..|+++||+|.++.+..
T Consensus         4 l~gK~~lItGaag~~GI-G~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSI-AFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCH-HHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHHcCCEEEEEeCCh
Confidence            799999999952   45 9999999999999999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.63  E-value=0.003  Score=52.09  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC---------------CCHHhhccCCcEEEEccCCCCcc---cCCCc
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT---------------KNPEEITRQADIIISAVGQPNMV---RGSWI  304 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t---------------~~L~~~l~~ADIVIsAvG~p~~I---~~~~v  304 (375)
                      |+.+||.|++ |.+++..|++.| .+|++++++.               .+. +.++++|+||.++. |+.+   -.+..
T Consensus         2 kI~fIG~G~M-G~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~-~~v~~~Div~lavk-P~~~~~v~~~l~   78 (152)
T d1yqga2           2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATL-PELHSDDVLILAVK-PQDMEAACKNIR   78 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSC-CCCCTTSEEEECSC-HHHHHHHHTTCC
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccc-ccccccceEEEecC-HHHHHHhHHHHh
Confidence            6899999986 999999887776 7899998863               122 34678999999986 4322   12333


Q ss_pred             CCCcEEEEee
Q 017184          305 KPGAVIIDVG  314 (375)
Q Consensus       305 k~gavVIDvg  314 (375)
                      +.+.++|.+.
T Consensus        79 ~~~~~viS~~   88 (152)
T d1yqga2          79 TNGALVLSVA   88 (152)
T ss_dssp             CTTCEEEECC
T ss_pred             hcccEEeecc
Confidence            4467888764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.62  E-value=0.0078  Score=52.34  Aligned_cols=54  Identities=9%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCCH------Hhhcc--CCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------EEITR--QADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~L------~~~l~--~ADIVIsAvG~p~  297 (375)
                      ||+|.|++|.+|+.++..|.++|.+|+.++++.-|+      ++.++  +.|+||.+++...
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~~   64 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTA   64 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeeccccc
Confidence            599999999999999999999999999998875433      45554  5699999887543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.58  E-value=0.011  Score=53.93  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC-----------------------------CCHHhhccCCcEEEE
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t-----------------------------~~L~~~l~~ADIVIs  291 (375)
                      +||+|+|.|++|.+|..++..|+++|++|..+-|+.                             ..+.+.+..+|.|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            699999999999999999999999999998765421                             123467788899987


Q ss_pred             ccCCC
Q 017184          292 AVGQP  296 (375)
Q Consensus       292 AvG~p  296 (375)
                      .++..
T Consensus        90 ~a~~~   94 (342)
T d1y1pa1          90 IASVV   94 (342)
T ss_dssp             CCCCC
T ss_pred             hcccc
Confidence            66643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0033  Score=56.18  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            479999999998888999999999999999999875

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.52  E-value=0.0051  Score=52.06  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      |+.-.+..|.+.+...+|..|+|-|+++-||..+.++....||+|+...++.+
T Consensus         7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~   59 (167)
T d1tt7a2           7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE   59 (167)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence            56666777888887778889999999888999999999999999888777643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.49  E-value=0.01  Score=49.01  Aligned_cols=52  Identities=15%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-C-eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-A-TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-A-tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      |+.|||+|. ||.++|..|+.++ + ++.+++.+                          +.+ .+.+++||+||.++|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            789999977 6999999998877 3 67777533                          123 4789999999999996


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        80 ~~   81 (142)
T d1ojua1          80 AR   81 (142)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.47  E-value=0.0025  Score=57.72  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999888999999999999999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.46  E-value=0.0086  Score=53.34  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .||.++|-|++.-+|+.+|..|+++|++|.++.++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            48988999999888999999999999999999876

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.015  Score=49.44  Aligned_cols=53  Identities=30%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      |++-.+..|++.+...++.+|+|.|+++-||....++....||+|+.+.++.+
T Consensus        15 TA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~   67 (177)
T d1o89a2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (177)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence            55555666778888778889999999999999999999999999887766543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.38  E-value=0.0053  Score=51.30  Aligned_cols=95  Identities=16%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             cccCCHHHHHHHHHHhCCCC-CCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC------------------CC-H
Q 017184          221 FIPCTPKGCIELLHRYGFDI-KGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT------------------KN-P  279 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l-~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t------------------~~-L  279 (375)
                      -++|...-.+..|++.+..+ .|.+|+|+|.|.+ |...++++...|+ .|+++.++.                  .+ .
T Consensus        11 ~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~v-G~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~   89 (172)
T d1h2ba2          11 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGL-GHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPV   89 (172)
T ss_dssp             GGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHH-HHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHH
T ss_pred             HHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChH-HHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHH
Confidence            45776666777787776544 5899999999775 9998888888886 666665431                  12 2


Q ss_pred             Hhhc-----cCCcEEEEccCCCCcc--cCCCcCCCcEEEEeeec
Q 017184          280 EEIT-----RQADIIISAVGQPNMV--RGSWIKPGAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l-----~~ADIVIsAvG~p~~I--~~~~vk~gavVIDvgin  316 (375)
                      ++..     +..|+||.++|.+..+  .-+.++++..++=+|..
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence            2222     2479999999987644  34567887777778853

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.37  E-value=0.0065  Score=50.62  Aligned_cols=77  Identities=19%  Similarity=0.265  Sum_probs=55.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC---CeEEEEcCCC----------------CCHHhhccCCcEEEEccCCCC--ccc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT----------------KNPEEITRQADIIISAVGQPN--MVR  300 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g---AtVtv~hs~t----------------~~L~~~l~~ADIVIsAvG~p~--~I~  300 (375)
                      |-||.|||++|.||.-+..+|.++.   .++..+.++.                ........+.|+++.+++...  ..-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            6689999999999999999998885   3455554331                122345678899999987422  123


Q ss_pred             CCCcCCCcEEEEeeecCC
Q 017184          301 GSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       301 ~~~vk~gavVIDvgin~~  318 (375)
                      ++..+.|..|||.+-.+.
T Consensus        81 ~~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             HHHHHTTCEEEECSSTTT
T ss_pred             hhhccccceehhcChhhh
Confidence            345678999999997764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.013  Score=48.61  Aligned_cols=54  Identities=20%  Similarity=0.355  Sum_probs=38.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhh-CC--CeEEEEcCCC-----------------------CCHHhhccCCcEEEEccCCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQR-ED--ATVSIVHSRT-----------------------KNPEEITRQADIIISAVGQPN  297 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~-~g--AtVtv~hs~t-----------------------~~L~~~l~~ADIVIsAvG~p~  297 (375)
                      ||+|||+++-||..+|.+|.. .+  .++.+.+...                       .+..+.+++|||||.+.|.|.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            799999755579999998753 33  4677765321                       223457899999999999763

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.012  Score=50.54  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ...+|+|+|||+|-+ |...|..|.++|.+|+++.+.
T Consensus        40 ~~~~k~V~IIGaGPA-GL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPA-GLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECccHH-HHHHHHHHHhhccceEEEecc
Confidence            357899999999997 999999999999999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.26  E-value=0.012  Score=46.11  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +-..|+++|||.|-+ |--+|..|.+.|++||+.++.
T Consensus        18 ~~~p~~vvIiGgG~~-G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          18 KALPQHLVVVGGGYI-GLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             SSCCSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHhhcccceEEEeee
Confidence            334689999999886 999999999999999999876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.25  E-value=0.024  Score=45.07  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +-++|+|+|||+|-+ |.-+|..|.+.|.+||+.++..
T Consensus        27 ~~~~k~vvViGgG~i-G~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYI-GIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCEEEEECChHH-HHHHHHHhhccceEEEEEEecC
Confidence            457899999999886 9999999999999999998764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.0091  Score=49.61  Aligned_cols=54  Identities=19%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC----e-E--EEEcCC--------------------------CCCHHhhccCCcEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA----T-V--SIVHSR--------------------------TKNPEEITRQADII  289 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA----t-V--tv~hs~--------------------------t~~L~~~l~~ADIV  289 (375)
                      -||+|||+++-||.+++.+|...+.    + +  .++...                          +.+.++.+++||||
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            4899999976689999999987642    1 1  111110                          24677899999999


Q ss_pred             EEccCCC
Q 017184          290 ISAVGQP  296 (375)
Q Consensus       290 IsAvG~p  296 (375)
                      |.+.|.|
T Consensus        85 iitaG~~   91 (154)
T d1y7ta1          85 LLVGAAP   91 (154)
T ss_dssp             EECCCCC
T ss_pred             EeecCcC
Confidence            9999976

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.19  E-value=0.0059  Score=50.54  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      .+|||+|||+|.+ |..+|..|.++|+ .|++.++.
T Consensus         3 ~~~kVaIIGaGpa-Gl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPA-SISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHH-HHHHHHHHHHCCCCeEEEEEec
Confidence            4799999999997 9999999999998 49999765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0048  Score=52.52  Aligned_cols=93  Identities=19%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             cCCHHHHHHHHHHhCCCCCC--CEEEEEcCCcccHHHHHHHHhhCCCeEE-EEcCC--------------------CCCH
Q 017184          223 PCTPKGCIELLHRYGFDIKG--KRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR--------------------TKNP  279 (375)
Q Consensus       223 PcT~~gvi~lL~~~~i~l~G--K~vvVIGrs~~VGkpla~lL~~~gAtVt-v~hs~--------------------t~~L  279 (375)
                      +++..-....|.+.+---.|  +.|+|-|+++.||..+.++....||+++ .+.+.                    ++++
T Consensus        10 g~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~   89 (187)
T d1vj1a2          10 GMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNV   89 (187)
T ss_dssp             SHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCH
T ss_pred             hcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhH
Confidence            44445555666555322234  7899999877789999998888998644 33322                    2344


Q ss_pred             HhhccC-----CcEEEEccCCCCc-ccCCCcCCCcEEEEeee
Q 017184          280 EEITRQ-----ADIIISAVGQPNM-VRGSWIKPGAVIIDVGI  315 (375)
Q Consensus       280 ~~~l~~-----ADIVIsAvG~p~~-I~~~~vk~gavVIDvgi  315 (375)
                      .+.+++     +|+|+-++|.+.+ -..+.++++-.++-+|.
T Consensus        90 ~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          90 AEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             HHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEecc
Confidence            443333     7888888875433 23456777777777763

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.017  Score=52.18  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      |+|+|.|++|.+|+.++..|+++|.+|+.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            89999999999999999999999999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.03  E-value=0.011  Score=53.46  Aligned_cols=37  Identities=32%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++||+|+|.|++|.+|..++..|+.+|++|..+.+..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4799999999999999999999999999999997753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.013  Score=51.29  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCc--ccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          240 IKGKRAVVIGRSN--IVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       240 l~GK~vvVIGrs~--~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      |+||+|+|.|++.  =+|+.+|..|+++|++|+++.++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7999999999864  2389999999999999999987643

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.97  E-value=0.025  Score=47.36  Aligned_cols=55  Identities=25%  Similarity=0.390  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      +|+|++|++||-++-|.+.++.+|..-|+++++|.-.                         +.++.+.++.||+|.+..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4799999999999999999999999999999999532                         246778999999999654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.96  E-value=0.013  Score=48.58  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC-------eEEEEcCC--------------------------CCCHHhhccCCcEE
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA-------TVSIVHSR--------------------------TKNPEEITRQADII  289 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA-------tVtv~hs~--------------------------t~~L~~~l~~ADIV  289 (375)
                      -||+|||+++.||..++..|.+.+-       ........                          +.+.++.++++|||
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999866689999998876431       23333221                          24667899999999


Q ss_pred             EEccCCCC
Q 017184          290 ISAVGQPN  297 (375)
Q Consensus       290 IsAvG~p~  297 (375)
                      |.+.|.|.
T Consensus        84 Vitag~~~   91 (154)
T d5mdha1          84 ILVGSMPR   91 (154)
T ss_dssp             EECCSCCC
T ss_pred             EEecccCC
Confidence            99999764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.015  Score=43.50  Aligned_cols=54  Identities=30%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN  278 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~  278 (375)
                      |+.-++..+.+.+..-+|.+++|.|+++-||....+++...|++|+.+-++.++
T Consensus        15 TA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             HHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            444445556666666789999999999999999999999999999877665544

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0099  Score=55.23  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh----CCC-------eEEEEcCC------------------
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR----EDA-------TVSIVHSR------------------  275 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~----~gA-------tVtv~hs~------------------  275 (375)
                      |-.|++..|+-.+-+|+.-++|+.|+|.. |-.++.+|..    .|.       .+++++++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiv~~GAGsA-g~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~   86 (294)
T d1pj3a1           8 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF   86 (294)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHh
Confidence            34678889999999999999999999987 8888887654    332       38888764                  


Q ss_pred             --------CCCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 --------TKNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 --------t~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                              ..+|.+.++  ++|++|-..|.++.+++++++      +.-+|+=+. ||.
T Consensus        87 a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS-NPt  144 (294)
T d1pj3a1          87 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  144 (294)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc-CCC
Confidence                    024666665  889999999999999999985      778888887 554

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.85  E-value=0.017  Score=51.89  Aligned_cols=49  Identities=31%  Similarity=0.303  Sum_probs=40.2

Q ss_pred             cCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          223 PCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       223 PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      -.|.+|+.    +.+++.+.+++||+|+|=|.|+ ||..++.+|.+.||+|+.+
T Consensus         8 ~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGn-VG~~~a~~L~~~Gakvv~v   60 (242)
T d1v9la1           8 YATGFGVAVATREMAKKLWGGIEGKTVAIQGMGN-VGRWTAYWLEKMGAKVIAV   60 (242)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSH-HHHHHHHHHHTTTCEEEEE
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEe
Confidence            45777765    4555677899999999999999 5999999999999987543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0071  Score=50.46  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC-C---CeEEEEcCCCC---------------CH--HhhccCCcEEEEccCCC--Ccc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE-D---ATVSIVHSRTK---------------NP--EEITRQADIIISAVGQP--NMV  299 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~-g---AtVtv~hs~t~---------------~L--~~~l~~ADIVIsAvG~p--~~I  299 (375)
                      |+|.|||++|.||+-+..+|+.+ +   .+++...+...               ++  .+..++.|++|.++|.-  +.+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            68999999999999988655543 2   46665554320               11  13467899999999742  123


Q ss_pred             cCCCcCCC--cEEEEeeecCC
Q 017184          300 RGSWIKPG--AVIIDVGINPV  318 (375)
Q Consensus       300 ~~~~vk~g--avVIDvgin~~  318 (375)
                      -+...+.|  .+|||.+-.+.
T Consensus        82 ~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHHHTTCCCEEEECSSTTT
T ss_pred             hHHHHhcCCCeecccCCcccc
Confidence            33444555  68999986653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.81  E-value=0.02  Score=52.16  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---------------------CCHHhhccCCcEEEEccCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      -++.+|+|.|++|.+|+.++..|+++|.+|+++++..                     .++.+.++..|.||..++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            4788999999999999999999999999999985431                     1233456789999977754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.81  E-value=0.034  Score=42.87  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCcccHH-HHHHHHhhCCCeEEEEcCCCC
Q 017184          241 KGKRAVVIGRSNIVGM-PAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGk-pla~lL~~~gAtVtv~hs~t~  277 (375)
                      +.|++-+||-|++ |+ ++|.+|.++|++|+-++....
T Consensus         7 ~~~~ihfiGigG~-GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGA-GMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTST-THHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHH-HHHHHHHHHHhCCCEEEEEeCCCC
Confidence            5789999999998 84 569999999999999987643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.76  E-value=0.012  Score=49.79  Aligned_cols=33  Identities=39%  Similarity=0.628  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -|+|+|||+|-+ |-.+|..|+++|.+|+++.+.
T Consensus         6 ~~kVvVIGaGia-Gl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVI-GLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            478999999876 999999999999999999753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.75  E-value=0.0079  Score=48.58  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             EEEEE-cCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          244 RAVVI-GRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       244 ~vvVI-Grs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ||.|| |.|+ +|+.+|..|++.|++|++..|+.
T Consensus         2 ki~vigGaG~-iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcH-HHHHHHHHHHHCCCEEEEEECCH
Confidence            58888 5666 59999999999999999998874

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.71  E-value=0.014  Score=48.45  Aligned_cols=53  Identities=11%  Similarity=0.065  Sum_probs=40.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEE--cCCC--------------------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIV--HSRT--------------------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~--hs~t--------------------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++|+|.|++|.+|+.++..|+++|.+|+++  .|+.                    .++.+.++.+|.||..++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            789999999999999999999999765443  3331                    1234667889999977764

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.095  Score=48.22  Aligned_cols=149  Identities=15%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEeCCCCCCH----HHHHHHHHHhhcCCCccEEEEeCCCCCCCCHHHHHhhCCcccccCc
Q 017184          128 SATYVRNKKKACQSVGINSFEVHLPEDTSE----QEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG  203 (375)
Q Consensus       128 S~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~----~el~~~I~~LN~D~~V~GIlVqlPLp~~i~~~~i~~~I~p~KDVDG  203 (375)
                      |..---+=..++.++|.++.++..+.+...    |-+.+.++-|+.-  +++|++-.+-  |-.....   ..-.-+   
T Consensus        52 STRTR~SFe~A~~~LGg~~i~~~~~~~~~~~~kgEsi~Dt~~vls~~--~d~iv~R~~~--~~~~~~~---~~~~~~---  121 (310)
T d1tuga1          52 STRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQ--EGAARLA---TEFSGN---  121 (310)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSSCHHHHTSCCHHHHHHHHTTT--CSEEEEEESS--BTHHHHH---TTTCTT---
T ss_pred             CcchhhhHHHHHHHhccccccccccccccccCCCccHHHhhhHhhhc--chheeeechh--hhhhHHH---HHhccC---
Confidence            444444567899999999987776654432    5688888888764  7888887653  2222111   111111   


Q ss_pred             cccchhhhcccCCCccccccCCHHH-HHHHHHHhCCCCCCCEEEEEcC--CcccHHHHHHHHhhCC-CeEEEEcCC----
Q 017184          204 FHPLNIGRLAMRGREPLFIPCTPKG-CIELLHRYGFDIKGKRAVVIGR--SNIVGMPAALLLQRED-ATVSIVHSR----  275 (375)
Q Consensus       204 l~~~N~G~l~~g~~~~~~~PcT~~g-vi~lL~~~~i~l~GK~vvVIGr--s~~VGkpla~lL~~~g-AtVtv~hs~----  275 (375)
                      +-.+|.|-      .+.+.||=+.+ ++.+.|+.| +++|++++.+|-  .+-|...++.++...+ ..+++|+-.    
T Consensus       122 vPVINAg~------~~~~HP~Q~LaD~~Ti~e~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~  194 (310)
T d1tuga1         122 VPVLNAGD------GSNQHPTQTLLDLFTIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM  194 (310)
T ss_dssp             SCEEEEEE------TTSCCHHHHHHHHHHHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCC
T ss_pred             ccEEECCC------CcccchHHHHHHHHHHHHHcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCccccc
Confidence            23446421      23456998887 455555554 699999999997  2335777777777775 689988532    


Q ss_pred             -----------------CCCHHhhccCCcEEEEcc
Q 017184          276 -----------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       276 -----------------t~~L~~~l~~ADIVIsAv  293 (375)
                                       +.++++.+++||+|.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~  229 (310)
T d1tuga1         195 PQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             CHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECC
T ss_pred             chhcccccccccceeeeeechhhhccCCceeeecc
Confidence                             246788999999988543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.046  Score=41.68  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             CEEEEEcCCcccHH-HHHHHHhhCCCeEEEEcCCCCCHHhhccCCcE
Q 017184          243 KRAVVIGRSNIVGM-PAALLLQREDATVSIVHSRTKNPEEITRQADI  288 (375)
Q Consensus       243 K~vvVIGrs~~VGk-pla~lL~~~gAtVtv~hs~t~~L~~~l~~ADI  288 (375)
                      .++-+||-|++ |+ ++|.+|+++|+.|+-+++......+.+++..|
T Consensus         2 ~~ihfiGIgG~-GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi   47 (89)
T d1j6ua1           2 MKIHFVGIGGI-GMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI   47 (89)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred             cEEEEEeECHH-HHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC
Confidence            47889999997 88 78999999999999999875444445555444

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.53  E-value=0.01  Score=50.71  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=28.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+|.|||+|-+ |..+|.++++.|.+|+++++.
T Consensus         5 ~~vaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIM-GGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECC
Confidence            68999999775 999999999999999999765

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.40  E-value=0.017  Score=47.41  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------CHHhhccCCcEEEEccCCCCcc----c--CCCc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------NPEEITRQADIIISAVGQPNMV----R--GSWI  304 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------~L~~~l~~ADIVIsAvG~p~~I----~--~~~v  304 (375)
                      ||-+||-|.+ |.++|..|++.|..| +.+++..             +..+.+.++|++|+.+..+.-+    +  .+..
T Consensus         2 kIg~IGlG~M-G~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAM-GYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTT-HHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHH-HHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            5889999886 999999999888765 5665431             2345677899999888765421    1  2457


Q ss_pred             CCCcEEEEeeec
Q 017184          305 KPGAVIIDVGIN  316 (375)
Q Consensus       305 k~gavVIDvgin  316 (375)
                      +++.++||....
T Consensus        80 ~~~~~iid~sT~   91 (156)
T d2cvza2          80 REGTYWVDATSG   91 (156)
T ss_dssp             CTTEEEEECSCC
T ss_pred             cccccccccccC
Confidence            889999999854

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.0092  Score=51.42  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      .|+++|.|++.-+|+.+|..|+++||+|.++.++.+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            488999999887899999999999999999987643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.32  E-value=0.019  Score=51.00  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CEE-EEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRA-VVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~v-vVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||| +|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            565 666888778999999999999999999876

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.035  Score=48.12  Aligned_cols=39  Identities=38%  Similarity=0.523  Sum_probs=32.3

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHh--------------------hCCC-eEEEEcCCC
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQ--------------------REDA-TVSIVHSRT  276 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~--------------------~~gA-tVtv~hs~t  276 (375)
                      ..++.||+|+|||.|++ +.=+|.+|+                    +.|+ +|+++-|++
T Consensus        34 ~~~~~gk~VvVIGgGNv-AlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNV-ALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCCSSEEEEECCSHH-HHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CccccCceEEEECCCch-hHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            35678999999999995 988888877                    5676 799998875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.28  E-value=0.033  Score=45.96  Aligned_cols=53  Identities=25%  Similarity=0.364  Sum_probs=39.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC--------------------------CCCHHhhccCCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR--------------------------TKNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~--------------------------t~~L~~~l~~ADIVIsAvG~  295 (375)
                      ||.|||+.+-||..+|..|..++.  ++.++...                          +.+ .+.+++|||||.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~-~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-YEDTAGSDVVVITAGI   80 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-GGGGTTCSEEEECCCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC-HHHhhhcCEEEEeccc
Confidence            799999544469999999999883  57766421                          112 3557899999999996


Q ss_pred             CC
Q 017184          296 PN  297 (375)
Q Consensus       296 p~  297 (375)
                      |.
T Consensus        81 ~~   82 (142)
T d1o6za1          81 PR   82 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.25  E-value=0.027  Score=49.03  Aligned_cols=34  Identities=9%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -+||+|+|++|.+|+.++..|+++|.+|++..|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3569999999999999999999999999998775

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.20  E-value=0.042  Score=46.82  Aligned_cols=57  Identities=16%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC---C----eEEEEcCC--------------------------CCCHHhhccCCc
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED---A----TVSIVHSR--------------------------TKNPEEITRQAD  287 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g---A----tVtv~hs~--------------------------t~~L~~~l~~AD  287 (375)
                      +--+|+|+|+++-||.+++.+|++.+   .    .+.+.+..                          +.+..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            34589999987778999999888642   1    22333221                          357788999999


Q ss_pred             EEEEccCCCC
Q 017184          288 IIISAVGQPN  297 (375)
Q Consensus       288 IVIsAvG~p~  297 (375)
                      +||...|.|.
T Consensus       103 vVvi~ag~~r  112 (175)
T d7mdha1         103 WALLIGAKPR  112 (175)
T ss_dssp             EEEECCCCCC
T ss_pred             eEEEeeccCC
Confidence            9999998763

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.19  E-value=0.025  Score=48.39  Aligned_cols=73  Identities=30%  Similarity=0.530  Sum_probs=51.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC---------------------CCHHhhccCCcEEEEccCCCC---
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT---------------------KNPEEITRQADIIISAVGQPN---  297 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t---------------------~~L~~~l~~ADIVIsAvG~p~---  297 (375)
                      .||.|+|++|.||+-+..+|.++- .++..+.+++                     .+.++...+.|+|+.+++.-.   
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~   81 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYD   81 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHH
Confidence            379999999999999999998764 4665553331                     133445567999999998643   


Q ss_pred             cccCCCcCCCcEEEEeeecCC
Q 017184          298 MVRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       298 ~I~~~~vk~gavVIDvgin~~  318 (375)
                      ++..  . .+..|||.+-.+.
T Consensus        82 ~~~~--~-~~~~VIDlSadfR   99 (176)
T d1vkna1          82 LVRE--L-KGVKIIDLGADFR   99 (176)
T ss_dssp             HHTT--C-CSCEEEESSSTTT
T ss_pred             HHHh--h-ccceEEecCcccc
Confidence            2332  2 4789999987654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.13  E-value=0.031  Score=48.45  Aligned_cols=53  Identities=13%  Similarity=0.196  Sum_probs=39.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC----H--------------HhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN----P--------------EEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~----L--------------~~~l~~ADIVIsAvG~  295 (375)
                      |-|+|.|++.-+|+++|..|+++|++|.+++++..+    +              .+.-..-|++|+.+|.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~Ag~   72 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGL   72 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCHHHHHHHHHHHHHHhCCCCcEEEEcCCC
Confidence            567888988778999999999999999999876421    1              0112457899987773

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.12  E-value=0.019  Score=45.90  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~  275 (375)
                      .||+|+|||+|-+ |..+|..|.+.+  .+||+.++.
T Consensus         1 ~gkrivIvGgG~~-G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           1 AGRKVVVVGGGTG-GATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHcCCCCcEEEEECC
Confidence            4999999999886 999999999877  589998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.11  E-value=0.021  Score=45.86  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -..|+++|||.|-+ |--+|..|.+.|+.||++++..
T Consensus        24 ~~p~~vvIiGgG~I-G~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGII-GLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECCCHH-HHHHHHHhhcCCCEEEEEEeec
Confidence            34689999999885 9999999999999999998764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.08  E-value=0.025  Score=47.79  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=40.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCCC-----------CCHH----hhccCCcEEEEccCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSRT-----------KNPE----EITRQADIIISAVGQP  296 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~t-----------~~L~----~~l~~ADIVIsAvG~p  296 (375)
                      |+|+|+|++|.+|+.++..|+++|.  +|+.+.|+.           .++.    ......|.||.++|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            8999999999999999999999986  566665542           1222    2234469999888753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.05  E-value=0.026  Score=44.95  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------------------C---HH-hhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------------------N---PE-EITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------------------~---L~-~~l~~ADIVIsAvG~p  296 (375)
                      +|+|+|.|.+ |+.++..|.++|..|++......                   +   |+ ..+++||.+|.+++..
T Consensus         2 ~IvI~G~G~~-G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGIGRV-GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence            6999999885 99999999999999999865421                   1   12 2267888888877754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.04  E-value=0.016  Score=48.42  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCCC-------------------------HHhhccCCcEEEEccCCCCc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN-------------------------PEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~~-------------------------L~~~l~~ADIVIsAvG~p~~  298 (375)
                      ||-|||-|.+ |.+++..|+++|.+|++++++...                         +...+..+++++..+.....
T Consensus         3 kIGvIGlG~M-G~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5889999996 999999999999999999875311                         12234455555555543322


Q ss_pred             c------cCCCcCCCcEEEEeeecC
Q 017184          299 V------RGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       299 I------~~~~vk~gavVIDvgin~  317 (375)
                      +      -...+++|.++||.+...
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhhccccceecccCccc
Confidence            1      113568899999988543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.057  Score=45.63  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             CCEEEEEcCCcccHHHH--HHHHhhCC----CeEEEEcCC--------------------------CCCHHhhccCCcEE
Q 017184          242 GKRAVVIGRSNIVGMPA--ALLLQRED----ATVSIVHSR--------------------------TKNPEEITRQADII  289 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpl--a~lL~~~g----AtVtv~hs~--------------------------t~~L~~~l~~ADIV  289 (375)
                      .-|++|||+|.+ |.+.  ..+|....    .++..++..                          +.|.++.++.||+|
T Consensus         3 ~~KI~iIGaGsv-~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGST-FTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             CEEEEEECTTSS-SHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CceEEEECCChh-hhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            457999999875 6553  23333222    367777543                          35888999999999


Q ss_pred             EEccCCCC
Q 017184          290 ISAVGQPN  297 (375)
Q Consensus       290 IsAvG~p~  297 (375)
                      |+++|.+.
T Consensus        82 vitag~~~   89 (167)
T d1u8xx1          82 MAHIRVGK   89 (167)
T ss_dssp             EECCCTTH
T ss_pred             EECCCcCC
Confidence            99999764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.066  Score=43.05  Aligned_cols=76  Identities=14%  Similarity=0.213  Sum_probs=57.5

Q ss_pred             CCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhcc
Q 017184          239 DIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITR  284 (375)
Q Consensus       239 ~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~  284 (375)
                      .+.+|+|.|+|-+         +.-...++..|..+|++|.+..-.                         ..++.+.++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            4678999999964         233667889999999999988520                         246788899


Q ss_pred             CCcEEEEccCCCCccc-CCCcCCCcEEEEee
Q 017184          285 QADIIISAVGQPNMVR-GSWIKPGAVIIDVG  314 (375)
Q Consensus       285 ~ADIVIsAvG~p~~I~-~~~vk~gavVIDvg  314 (375)
                      .||+||.++..+.+.. ...++++.+|||+-
T Consensus        90 ~~D~ivi~t~h~~f~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          90 SSDVLVLGNGDELFVDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HCSEEEECSCCGGGHHHHHSCCTTCEEEESS
T ss_pred             hceEEEEEeCCHHHHHHHHHhcCCCEEEECC
Confidence            9999999999988732 12345678999963

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.93  E-value=0.017  Score=48.32  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC----CeEEEEcCCC----------C-------CHHhhccCCcEEEEccCCCC--ccc
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED----ATVSIVHSRT----------K-------NPEEITRQADIIISAVGQPN--MVR  300 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g----AtVtv~hs~t----------~-------~L~~~l~~ADIVIsAvG~p~--~I~  300 (375)
                      ||.|||++|.||+-+..+|+++.    .++....++.          +       .-.+..+++|+||.|++.-.  -+-
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~~   81 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY   81 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHHh
Confidence            69999999999999987776432    5665543331          0       11245689999999997421  122


Q ss_pred             CCCcCCC--cEEEEeeecCC
Q 017184          301 GSWIKPG--AVIIDVGINPV  318 (375)
Q Consensus       301 ~~~vk~g--avVIDvgin~~  318 (375)
                      +..++.|  .+|||.+-.+.
T Consensus        82 ~~l~~~g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          82 PALRQAGWKGYWIDAASTLR  101 (147)
T ss_dssp             HHHHHTTCCSEEEESSSTTT
T ss_pred             HHHHHcCCceEEEeCCcccc
Confidence            2334444  68999987654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.041  Score=45.93  Aligned_cols=53  Identities=17%  Similarity=0.064  Sum_probs=38.2

Q ss_pred             EEEEEcCCcccHHHHHHHHh--hC----CCeEEEEcCC-----------------------CCCHHhhccCCcEEEEccC
Q 017184          244 RAVVIGRSNIVGMPAALLLQ--RE----DATVSIVHSR-----------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~--~~----gAtVtv~hs~-----------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      |++|||+|. +|.+.+...+  ..    ..++.+.+..                       +.+.++.+++||+||.++|
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            689999987 4877764322  22    2477777543                       4577899999999999999


Q ss_pred             CCC
Q 017184          295 QPN  297 (375)
Q Consensus       295 ~p~  297 (375)
                      .+.
T Consensus        81 ~~~   83 (162)
T d1up7a1          81 PGG   83 (162)
T ss_dssp             TTH
T ss_pred             cCC
Confidence            763

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.80  E-value=0.036  Score=50.19  Aligned_cols=48  Identities=23%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             cCCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEE
Q 017184          223 PCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI  271 (375)
Q Consensus       223 PcT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv  271 (375)
                      -.|.+|++    +++++.+.+++||+|+|=|.|+ ||..++..|.+.|+.|+.
T Consensus        13 eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGn-VG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          13 EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN-VAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH-HHHHHHHHHHHHTCEEEE
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEE
Confidence            56778865    4555678999999999999988 599999999999998653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.79  E-value=0.019  Score=44.61  Aligned_cols=38  Identities=11%  Similarity=-0.046  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++||+|+|||.|.. |.=++..|+....+|++++++.
T Consensus        28 ~~f~gK~VlVVG~g~S-a~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGASS-ANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSSHH-HHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhcCCCeEEEECCCCC-HHHHHHHHHHhcCEEEEEEecC
Confidence            3579999999999998 9999999998887777776654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.78  E-value=0.021  Score=49.15  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             ccccCCHHHHHHHHHHh-CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          220 LFIPCTPKGCIELLHRY-GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~-~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+........++..+.. .-.-..|+|+|||+|-. |...|..|+++|.+|+|+.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~a-GLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           7 CFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMA-GLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             GGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             hcCCccHHHHHHHHhcCCCCCCCCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            33334445555555432 22335789999999886 999999999999999999764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.78  E-value=0.031  Score=44.17  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .|+++|||+|-+ |--+|..|.+.|++||++++..
T Consensus        22 p~~v~IiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYI-AVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchH-HHHHHHHHHhccccceeeehhc
Confidence            589999999886 9999999999999999999864

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.75  E-value=0.03  Score=49.93  Aligned_cols=48  Identities=33%  Similarity=0.365  Sum_probs=38.5

Q ss_pred             CCHHHHH----HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh-CCCeEEEE
Q 017184          224 CTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR-EDATVSIV  272 (375)
Q Consensus       224 cT~~gvi----~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~-~gAtVtv~  272 (375)
                      +|.+|+.    +.+++.+.+++||+|+|=|.|+ ||..++..|.+ .|+.|+.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~Gn-VG~~~a~~L~~e~Ga~vv~v   61 (234)
T d1b26a1           9 ATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKVVAV   61 (234)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSH-HHHHHHHHHHHHHCCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCCceEEe
Confidence            4666664    5667788999999999999999 59999999975 59976544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.03  Score=47.12  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +-++|+|||+|-. |-..|..|.++|.+|+|+..+
T Consensus         4 ~~~kViVIGaG~a-GL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVS-GLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            4568999999988 999999999999999999654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.61  E-value=0.055  Score=42.10  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      ..|+++|||+|-+ |--+|..|.+.|..||++++..+
T Consensus        21 ~p~~v~IiGgG~i-g~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYI-GIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCcc-ceeeeeeecccccEEEEEEecce
Confidence            4589999999886 99999999999999999987753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.035  Score=43.51  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -|+++|||+|.+ |--+|..|.+.|++||++++..
T Consensus        21 p~~vvIiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYI-GVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChh-hHHHHHHhhccccEEEEEeecc
Confidence            589999999886 9999999999999999998875

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.053  Score=47.77  Aligned_cols=60  Identities=20%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             CCCCCEEEEEcC----------------CcccHHHHHHHHhhCCCeEEEEcCCCC----------------C----HHhh
Q 017184          239 DIKGKRAVVIGR----------------SNIVGMPAALLLQREDATVSIVHSRTK----------------N----PEEI  282 (375)
Q Consensus       239 ~l~GK~vvVIGr----------------s~~VGkpla~lL~~~gAtVtv~hs~t~----------------~----L~~~  282 (375)
                      +|+||+|+|-+.                ||-.|..+|..+..+||+||++|..+.                +    +.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            689999999863                344799999999999999999986431                1    2355


Q ss_pred             ccCCcEEEEccCCCCc
Q 017184          283 TRQADIIISAVGQPNM  298 (375)
Q Consensus       283 l~~ADIVIsAvG~p~~  298 (375)
                      ++++|++|.++-...+
T Consensus        83 ~~~~D~~i~aAAvsDf   98 (223)
T d1u7za_          83 VQQQNIFIGCAAVADY   98 (223)
T ss_dssp             GGGCSEEEECCBCCSE
T ss_pred             hccceeEeeeechhhh
Confidence            6899999977765444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.036  Score=43.99  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -|+++|||.|-+ |--+|..|.+.|.+||++++..
T Consensus        22 pk~vvIvGgG~i-G~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYI-AVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCcc-HHHHHHHHhcCCcEEEEEeecc
Confidence            489999999885 9999999999999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.49  E-value=0.092  Score=44.00  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC--------------------C-C
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT--------------------K-N  278 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t--------------------~-~  278 (375)
                      .++|--.-.+..+.+..---.|.+|+|+|.|++ |...++.+...|| .|+++.+..                    + .
T Consensus         8 ~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~i-Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~   86 (174)
T d1e3ia2           8 LIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCV-GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKP   86 (174)
T ss_dssp             GGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             HhhhHHHHHHHHHHHhhCCCCCCEEEEECCChH-HHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhh
Confidence            346633333333333322346899999999885 9999999999998 577775441                    1 1


Q ss_pred             HHhh-----ccCCcEEEEccCCCCcccC--CCcCCC-cEEEEeeec
Q 017184          279 PEEI-----TRQADIIISAVGQPNMVRG--SWIKPG-AVIIDVGIN  316 (375)
Q Consensus       279 L~~~-----l~~ADIVIsAvG~p~~I~~--~~vk~g-avVIDvgin  316 (375)
                      .++.     -.-+|++|-++|.+..+..  +++++| -.++=+|..
T Consensus        87 ~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          87 VQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC
Confidence            1111     1458999999999876533  567774 355557854

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.47  E-value=0.069  Score=46.52  Aligned_cols=53  Identities=26%  Similarity=0.328  Sum_probs=40.9

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHhh--------------------CCC-eEEEEcCCC--------CCHHhhccCCc
Q 017184          237 GFDIKGKRAVVIGRSNIVGMPAALLLQR--------------------EDA-TVSIVHSRT--------KNPEEITRQAD  287 (375)
Q Consensus       237 ~i~l~GK~vvVIGrs~~VGkpla~lL~~--------------------~gA-tVtv~hs~t--------~~L~~~l~~AD  287 (375)
                      ..++.||+|+|||.|++ +.=+|..|++                    .|+ +|+++.|+.        +++.+.....+
T Consensus        34 ~~~~~gk~VvVIGgGNV-AlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGNV-ALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSHH-HHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCchh-HHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCC
Confidence            45788999999999995 9999998887                    375 799998875        34666666666


Q ss_pred             EEE
Q 017184          288 III  290 (375)
Q Consensus       288 IVI  290 (375)
                      +-+
T Consensus       113 ~~~  115 (225)
T d1cjca1         113 TRP  115 (225)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.46  E-value=0.034  Score=47.75  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -|||+|+|++|.+|+.++..|+++|.+|++..|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            47899999999999999999999999999987753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.39  E-value=0.074  Score=41.22  Aligned_cols=35  Identities=14%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+++|||.|.+ |--+|..|.+.|+.|+++++..
T Consensus        21 ~~~~vvVvGgG~i-g~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKT-AVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcchhheEeeccc
Confidence            5899999999886 9999999999999999998864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.39  E-value=0.043  Score=43.56  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+++|||+|-+ |--+|..|.++|.+||++++..
T Consensus        29 ~~~~vvIIGgG~i-G~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVI-GLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchh-HHHHHHHhhcccceEEEEeecc
Confidence            5799999999886 9999999999999999998764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.024  Score=50.59  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             CCCEEEEE-cCCcccHHHHHHHHhhC-CCeEEEEcCC
Q 017184          241 KGKRAVVI-GRSNIVGMPAALLLQRE-DATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVI-Grs~~VGkpla~lL~~~-gAtVtv~hs~  275 (375)
                      .||+|+|| |++.=+|+.+|..|+++ |++|+++.|+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            58999766 55555699999999876 8999999876

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.36  E-value=0.09  Score=46.64  Aligned_cols=86  Identities=22%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC----------------------------CC
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR----------------------------TK  277 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~----------------------------t~  277 (375)
                      .|++..++-.+.+|+..++++.|+|.. |..++.+|...+. .++.++++                            ..
T Consensus        11 Agll~a~~~~g~~l~d~riv~~GAGsA-g~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
T d1vl6a1          11 AAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSG   89 (222)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCS
T ss_pred             HHHHHHHHHhCCChhhcEEEEEChHHH-HHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhc
Confidence            578889999999999999999999997 9999999998886 78998765                            13


Q ss_pred             CHHhhccCCcEEEEccCCCCcccCCCcC---CCcEEEEee
Q 017184          278 NPEEITRQADIIISAVGQPNMVRGSWIK---PGAVIIDVG  314 (375)
Q Consensus       278 ~L~~~l~~ADIVIsAvG~p~~I~~~~vk---~gavVIDvg  314 (375)
                      ++.+.++.+|+++... .++.+++++++   +.-+|+=+.
T Consensus        90 ~l~~~l~g~~~~~g~~-~~~~~~~e~m~~~~~rPIIFpLS  128 (222)
T d1vl6a1          90 DLETALEGADFFIGVS-RGNILKPEWIKKMSRKPVIFALA  128 (222)
T ss_dssp             CHHHHHTTCSEEEECS-CSSCSCHHHHTTSCSSCEEEECC
T ss_pred             chHhhccCcceecccc-ccccccHHHHhhcCCCCEEEecC
Confidence            5677888899877554 35666665443   345666555

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.04  Score=43.66  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -|+++|||+|-+ |--+|.+|.+.|++||+.++..
T Consensus        23 p~~~vIiG~G~i-g~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGII-GLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCch-HHHHHHHHHhhCcceeEEEecc
Confidence            489999999886 9999999999999999998764

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.29  E-value=0.022  Score=53.15  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhh----CCC-------eEEEEcCC-------------------
Q 017184          226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR----EDA-------TVSIVHSR-------------------  275 (375)
Q Consensus       226 ~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~----~gA-------tVtv~hs~-------------------  275 (375)
                      -.|++..|+-.+.+|+.-++++.|+|.. |-.++.+|..    .|.       .+++|+++                   
T Consensus         9 lAglinAlki~gk~l~d~kivi~GAGaA-g~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~   87 (308)
T d1o0sa1           9 VAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK   87 (308)
T ss_dssp             HHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECcCHH-HHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHH
Confidence            3678889999999999999999999987 8888877754    332       48888765                   


Q ss_pred             ----CCCHHhhccC--CcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 ----TKNPEEITRQ--ADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 ----t~~L~~~l~~--ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                          ..+|.+.++.  -+++|-+.|.++.+++++++      +.-+|+=+. ||.
T Consensus        88 ~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  141 (308)
T d1o0sa1          88 DMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  141 (308)
T ss_dssp             SSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc-CCC
Confidence                1235555443  37899999999999999985      677888887 554

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.23  E-value=0.06  Score=48.11  Aligned_cols=49  Identities=27%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             CCHHHHH----HHHHHhCCC-CCCCEEEEEcCCcccHHHHHHHHhhC-CCeEE-EEc
Q 017184          224 CTPKGCI----ELLHRYGFD-IKGKRAVVIGRSNIVGMPAALLLQRE-DATVS-IVH  273 (375)
Q Consensus       224 cT~~gvi----~lL~~~~i~-l~GK~vvVIGrs~~VGkpla~lL~~~-gAtVt-v~h  273 (375)
                      +|.+|+.    +++++.+.+ ++||+|+|-|.|+ ||..++.+|.++ |+.|+ +..
T Consensus         9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGn-VG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1           9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGN-AGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCcceeeccc
Confidence            4777765    566667765 9999999999999 599999988764 88644 443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.23  E-value=0.18  Score=42.05  Aligned_cols=97  Identities=13%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC-------------------CC--
Q 017184          221 FIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT-------------------KN--  278 (375)
Q Consensus       221 ~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t-------------------~~--  278 (375)
                      .++|.-.-.+..+.+..---.|..|+|+|.|++ |....+.+...|+ +|+++..+.                   .+  
T Consensus         9 ~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~Ggv-Gl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~   87 (176)
T d1d1ta2           9 LIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKP   87 (176)
T ss_dssp             GGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSC
T ss_pred             hhhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchH
Confidence            456644444444433333346999999999885 9999999999995 788886542                   11  


Q ss_pred             HH---hhc--cCCcEEEEccCCCCcc-c-CCCc-CCCcEEEEeeecCC
Q 017184          279 PE---EIT--RQADIIISAVGQPNMV-R-GSWI-KPGAVIIDVGINPV  318 (375)
Q Consensus       279 L~---~~l--~~ADIVIsAvG~p~~I-~-~~~v-k~gavVIDvgin~~  318 (375)
                      .+   +.+  ..+|++|.++|.+..+ . ...+ +.+-.++-+|..+.
T Consensus        88 ~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2          88 ISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             HHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             HHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccc
Confidence            11   222  5699999999987643 2 2334 45468888997653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.021  Score=50.47  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhh---CCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQR---EDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~---~gAtVtv~hs~t  276 (375)
                      .|+||.++|-|++.-+|+.+|..|++   +|++|+++.|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            58999888889987789999999975   799999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.14  E-value=0.11  Score=42.86  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------C
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------K  277 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~  277 (375)
                      ..++|...-.+..+.+.+---.|.+|+|+|.|+. |...++++...|+ +|+++.++.                     .
T Consensus         7 a~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~-G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~   85 (176)
T d2jhfa2           7 CLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGV-GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCc-HHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchh
Confidence            3457766555555544443447999999999985 8888888888885 677765432                     1


Q ss_pred             CHHhhc-----cCCcEEEEccCCCCccc--CCCcCCC-cEEEEeee
Q 017184          278 NPEEIT-----RQADIIISAVGQPNMVR--GSWIKPG-AVIIDVGI  315 (375)
Q Consensus       278 ~L~~~l-----~~ADIVIsAvG~p~~I~--~~~vk~g-avVIDvgi  315 (375)
                      .+.+..     ..+|++|-++|.+..+.  -++++.+ -+++=.+.
T Consensus        86 ~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          86 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence            122211     35899999999876543  2456664 34443443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.13  E-value=0.036  Score=47.90  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------CCHHhhccCCcEEEEccCC---CCccc--
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITRQADIIISAVGQ---PNMVR--  300 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------~~L~~~l~~ADIVIsAvG~---p~~I~--  300 (375)
                      |++|+|.|||.|.- |++=|+.|...|.+|+|--|..              .++.|.++.||||...++-   +.+.+  
T Consensus        14 ik~k~IaViGYGsQ-G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             HCCCEEEEEeeCcH-hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHh
Confidence            47999999999987 9999999999999999987763              3577999999999988872   22221  


Q ss_pred             -CCCcCCCc-EEEEeeec
Q 017184          301 -GSWIKPGA-VIIDVGIN  316 (375)
Q Consensus       301 -~~~vk~ga-vVIDvgin  316 (375)
                       ...+|+|+ +.+-=|+|
T Consensus        93 I~p~lk~g~~L~FaHGfn  110 (182)
T d1np3a2          93 IEPNLKKGATLAFAHGFS  110 (182)
T ss_dssp             TGGGCCTTCEEEESCCHH
T ss_pred             hhhhcCCCcEEEEeccce
Confidence             23567775 33333444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.016  Score=48.97  Aligned_cols=76  Identities=14%  Similarity=0.309  Sum_probs=51.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC-CCeEEEEc--C-CC---C---------------------CHHhhccCCcEEEEccC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE-DATVSIVH--S-RT---K---------------------NPEEITRQADIIISAVG  294 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~-gAtVtv~h--s-~t---~---------------------~L~~~l~~ADIVIsAvG  294 (375)
                      .||.|||++|.+|+-+..+|.++ ..+++-+.  + ..   +                     +......+.|+++.+.+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            37999999999999999999987 55654431  1 10   0                     12233467899999987


Q ss_pred             CCC--cccCCCcCCCcEEEEeeecCC
Q 017184          295 QPN--MVRGSWIKPGAVIIDVGINPV  318 (375)
Q Consensus       295 ~p~--~I~~~~vk~gavVIDvgin~~  318 (375)
                      ...  -+-+...+.|..|||.+-.+.
T Consensus        82 ~~~s~~~~~~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          82 HEVSHDLAPQFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred             chhHHHHhhhhhhcCceeeccccccc
Confidence            422  123345677899999986653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.02  E-value=0.052  Score=43.64  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+++|||+|-+ |--+|..|.+.|.+||++++..
T Consensus        34 ~~k~v~VIGgG~i-G~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYI-GLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchH-HHHHHHHHHhhCcceeeeeecc
Confidence            5799999999886 9999999999999999998865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.96  E-value=0.054  Score=45.66  Aligned_cols=51  Identities=24%  Similarity=0.364  Sum_probs=38.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC--------------------------------CCHHhhccCCcEEEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------------------------KNPEEITRQADIIIS  291 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t--------------------------------~~L~~~l~~ADIVIs  291 (375)
                      +|.|||.|- ||.|+|..|+ +|.+|+..+-..                                .+......++|+++.
T Consensus         2 kI~ViGlG~-vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGY-VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSH-HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCh-hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            689999987 5999998775 699999886431                                122344578999999


Q ss_pred             ccCCC
Q 017184          292 AVGQP  296 (375)
Q Consensus       292 AvG~p  296 (375)
                      +++.|
T Consensus        80 ~vpt~   84 (196)
T d1dlja2          80 ATPTN   84 (196)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            99876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.89  E-value=0.038  Score=43.60  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +|+++|||.|-+ |--+|..|.+.|++||++++..
T Consensus        32 ~~~vvIiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFI-GLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHH-HHHHHHHhhcccceEEEEeccc
Confidence            589999999886 9999999999999999998764

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.85  E-value=0.091  Score=43.35  Aligned_cols=54  Identities=24%  Similarity=0.330  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          240 IKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      |+|++++.||=+ +-|-..+..++...|+++++|.-.                         +.++++.++.||+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            689999999932 336899999999999999998642                         247788999999999755

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.034  Score=51.00  Aligned_cols=32  Identities=22%  Similarity=0.170  Sum_probs=29.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      |.|+|.|++|.+|..++..|+++|.+|+.+.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78889999999999999999999999998876

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.058  Score=43.08  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      .+||+|+|||.|+. +---|.+|.+-..+||++||+.+
T Consensus        25 ~~~k~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECSSHH-HHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEECCCHH-HHHHHHHHhhcCCcEEEEeeccc
Confidence            48999999999998 88888889888789999999863

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=92.61  E-value=0.047  Score=50.63  Aligned_cols=91  Identities=16%  Similarity=0.267  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhC----C-------CeEEEEcCC-------------------
Q 017184          226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE----D-------ATVSIVHSR-------------------  275 (375)
Q Consensus       226 ~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~----g-------AtVtv~hs~-------------------  275 (375)
                      -.|++..++-.+.+|+.-++|+.|+|-. |-.++.+|...    |       -.+++|+++                   
T Consensus         9 lAglinAlki~gk~l~d~kiV~~GAGsA-g~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~   87 (298)
T d1gq2a1           9 VAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAH   87 (298)
T ss_dssp             HHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHH
Confidence            4678899999999999999999999987 88888877532    3       258888765                   


Q ss_pred             ----CCCHHhhcc--CCcEEEEccCCCCcccCCCcC------CCcEEEEeeecCC
Q 017184          276 ----TKNPEEITR--QADIIISAVGQPNMVRGSWIK------PGAVIIDVGINPV  318 (375)
Q Consensus       276 ----t~~L~~~l~--~ADIVIsAvG~p~~I~~~~vk------~gavVIDvgin~~  318 (375)
                          ..++.+.++  +.+++|-+.+.++.+++++++      +.-+|+=+. ||.
T Consensus        88 ~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS-NPt  141 (298)
T d1gq2a1          88 EHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  141 (298)
T ss_dssp             SCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc-CCC
Confidence                124445544  378999999999999999885      567888776 553

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.52  E-value=0.11  Score=43.54  Aligned_cols=53  Identities=15%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             EEEEEcCCcccH--HHHHHHHhhCC----CeEEEEcCC----------------------------CCCHHhhccCCcEE
Q 017184          244 RAVVIGRSNIVG--MPAALLLQRED----ATVSIVHSR----------------------------TKNPEEITRQADII  289 (375)
Q Consensus       244 ~vvVIGrs~~VG--kpla~lL~~~g----AtVtv~hs~----------------------------t~~L~~~l~~ADIV  289 (375)
                      |++|||+|.+ |  ..++.++++..    .++++.+.+                            +.|..+.++.||+|
T Consensus         3 KI~iIGaGs~-~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           3 KIATIGGGSS-YTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEETTTCT-THHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             EEEEECCChh-hHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            6899999763 4  44555555432    267776532                            35677889999999


Q ss_pred             EEccCCCC
Q 017184          290 ISAVGQPN  297 (375)
Q Consensus       290 IsAvG~p~  297 (375)
                      |+++|.+.
T Consensus        82 v~ta~~~~   89 (169)
T d1s6ya1          82 TTQFRVGG   89 (169)
T ss_dssp             EECCCTTH
T ss_pred             EEccccCC
Confidence            99999764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.50  E-value=0.05  Score=49.61  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +.|+|+|||+|-. |-.+|..|+++|..|+|+.++.
T Consensus         1 k~KKI~IIGaG~s-GL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFS-GAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhCCCCEEEEECCC
Confidence            4699999999987 9999999999999999997653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.44  E-value=0.086  Score=43.14  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC---------------------C
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT---------------------K  277 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t---------------------~  277 (375)
                      ..++|.-.-.+..|.+.+---.|.+|+|.|.|++ |...++++...|+ +|+++.++.                     .
T Consensus         7 a~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGv-G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~   85 (176)
T d2fzwa2           7 CLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV-GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhH-HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhh
Confidence            3457766666666654433346999999999985 9988888888896 566554431                     1


Q ss_pred             CHHhhc-----cCCcEEEEccCCCCccc--CCCcCCCcEE
Q 017184          278 NPEEIT-----RQADIIISAVGQPNMVR--GSWIKPGAVI  310 (375)
Q Consensus       278 ~L~~~l-----~~ADIVIsAvG~p~~I~--~~~vk~gavV  310 (375)
                      +..+.+     ..+|+||.++|.+..+.  .+++++|..+
T Consensus        86 ~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2          86 PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGV  125 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCE
T ss_pred             HHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCcee
Confidence            122222     34899999999876542  2456666333

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.38  E-value=0.059  Score=45.91  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..+||+|||+|-+ |-.+|..|.++|.+|+|..+.
T Consensus         3 ~~~kV~IiGaG~a-Gl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSIS-GLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3578999999886 999999999999999999764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.37  E-value=0.081  Score=43.71  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      +..+|+|+|||.|.+ |.=.|..|.+.|| +|++.+|+.
T Consensus        42 p~~~~kVvVIGGGdt-A~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          42 PSIRGAVIVLGAGDT-AFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCSEEEEECSSHH-HHHHHHHHHHTTCSEEEEECSSC
T ss_pred             ccCCCEEEEECCChh-HHHHHHHHHHcCCcceeEEEeCC
Confidence            346788999999997 9999999999997 688888865

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.34  E-value=0.073  Score=49.13  Aligned_cols=48  Identities=25%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHh------------CCCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          224 CTPKGCIELLHRY------------GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       224 cT~~gvi~lL~~~------------~i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      +|.+|+...++..            +.+|+||+|+|=|.|+ ||..+|..|.+.||.|+.+
T Consensus         6 ATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGn-VG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1           6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGN-VGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEE
T ss_pred             HhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            4667776666531            2479999999999998 5999999999999986543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.30  E-value=0.041  Score=43.61  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      -.|+++|||.|-+ |.-+|..|.+.|++||+.++..
T Consensus        24 ~p~~~viiG~G~i-glE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGAGYI-GLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEccchH-HHHHHHHHHhcCCeEEEEEEcc
Confidence            3589999999885 9999999999999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.26  E-value=0.051  Score=45.67  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .+++||+|+|||.|.. |-=++..|...++.++.+.+.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            5789999999999999 999999999999876666544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.22  E-value=0.11  Score=40.69  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +-..|+++|||.|-+ |.-+|..|.+.|+.||++++..
T Consensus        19 ~~~p~~i~IiG~G~i-g~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          19 QNVPGKLGVIGAGVI-GLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SSCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCeEEEECCChH-HHHHHHHHHHcCCceEEEEeec
Confidence            345699999999885 9999999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.046  Score=44.17  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -.|+|||+|-. |..+|..|+++|..|+|+.++
T Consensus         6 yDviViGaG~~-Gl~~A~~La~~G~~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGIT-ECILSGLLSVDGKKVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEcCC
Confidence            35999999887 999999999999999999775

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.10  E-value=0.052  Score=47.12  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++||+|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~   35 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   35 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4679999999999999999999999999999775

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.02  E-value=0.066  Score=47.40  Aligned_cols=33  Identities=27%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+|+|.|++|-+|+.++..|+++|++|+.+.+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            799999999999999999999999999988764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.98  E-value=0.052  Score=43.77  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      +|+|||+|-+ |-.+|..|.++|. +|+|+.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMS-GISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHH-HHHHHHHHHhCCCCcEEEEECC
Confidence            5999999887 9999999999995 79999765

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.091  Score=47.33  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      ||+|+|++|-+|+.++..|+++|.+|+++.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d   31 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence            699999999999999999999999999874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.69  E-value=0.065  Score=49.27  Aligned_cols=32  Identities=38%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      ||+|+|.|++|.+|..++..|+++|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            89999999999999999999999999999873

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.50  E-value=0.086  Score=47.57  Aligned_cols=36  Identities=14%  Similarity=0.089  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +-|+|+|+|++|.+|+.++..|+++|.+|++..|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            458999999999999999999999999999987754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.48  E-value=0.085  Score=46.91  Aligned_cols=33  Identities=21%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      |+++|.|++|.+|+.++..|+++|++|+.+.+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988763

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=91.46  E-value=0.13  Score=43.59  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCCC----------------------CHHhhccCCcEEEEccCCCCc
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRTK----------------------NPEEITRQADIIISAVGQPNM  298 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t~----------------------~L~~~l~~ADIVIsAvG~p~~  298 (375)
                      .-||.|||++|.+|+-+..+|.++- .+++...+.+.                      ...+...+.|+|+.|++.-..
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            3479999999999999999999874 46665544320                      112345789999999875321


Q ss_pred             --ccCCCcCCCcEEEEeeecC
Q 017184          299 --VRGSWIKPGAVIIDVGINP  317 (375)
Q Consensus       299 --I~~~~vk~gavVIDvgin~  317 (375)
                        +-+...+.+.+|+|.+-.+
T Consensus        85 ~~~~~~l~~~~~~v~~~~~~~  105 (183)
T d2cvoa1          85 QEIIKGLPQELKIVDLSADFR  105 (183)
T ss_dssp             HHHHHTSCSSCEEEECSSTTT
T ss_pred             HHHHHHHHhcCcccccchhhh
Confidence              2223444555555544433

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.44  E-value=0.084  Score=46.34  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CEEE-EEcCCcccHHHHHHHHhhCCCe-------EEEEcCC
Q 017184          243 KRAV-VIGRSNIVGMPAALLLQREDAT-------VSIVHSR  275 (375)
Q Consensus       243 K~vv-VIGrs~~VGkpla~lL~~~gAt-------Vtv~hs~  275 (375)
                      |+|+ |.|+|.-+|+.+|..|+++|+.       |.++.++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            6765 5588777899999999999986       7777765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.43  E-value=0.094  Score=45.08  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -.+|+|+|||+|-+ |...|..|.++|.+|+++...
T Consensus        47 ~~~k~VvIIGaGpA-Gl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGAGPS-GSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEcccHH-HHHHHHHHHHhccceeeEeec
Confidence            47899999999997 999999999999999999654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.33  E-value=0.063  Score=44.87  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=28.4

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||+|-. |-..|..|.++|.+|+++.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGIS-GLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            6999999887 999999999999999999764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.32  E-value=0.078  Score=46.52  Aligned_cols=31  Identities=29%  Similarity=0.295  Sum_probs=25.6

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3555887667999999999999999987654

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.13  Score=42.64  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=46.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEcc
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      +|+|+++++||-+.-|-..++.++...|++++++...                         +.++.+.++.||+|.+..
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999988878888888888889999988643                         356788999999999766


Q ss_pred             C
Q 017184          294 G  294 (375)
Q Consensus       294 G  294 (375)
                      -
T Consensus        81 ~   81 (170)
T d1otha2          81 W   81 (170)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.25  E-value=0.044  Score=47.38  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=38.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC---CC------HHhhcc--CCcEEEEccCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---KN------PEEITR--QADIIISAVGQ  295 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t---~~------L~~~l~--~ADIVIsAvG~  295 (375)
                      ||+|.|++|.||+.++..|.++|..|.+..+..   .|      +++.++  +.|+||.++|.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            699999999999999999999886665554432   12      234454  45999988774

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.20  E-value=0.068  Score=47.14  Aligned_cols=30  Identities=10%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      ||+|.|++|.+|+.++..|+++|.+|+.++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            799999999999999999999999999874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.17  E-value=0.13  Score=46.36  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=28.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      |.|+|.|++|.+|+.++..|+++|.+|+++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEE
Confidence            7788999999999999999999999999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.08  E-value=0.077  Score=41.97  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ..|+++|||+|-+ |.-+|..|.+.|++||++.+.
T Consensus        19 ~P~~vvIIGgG~i-G~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYV-ALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCcc-HHHHHHHHhhcCCeEEEEEec
Confidence            4579999999886 999999999999999999764

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.04  E-value=0.14  Score=41.81  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             CCCCEEEEEcCC--cccHHHHHHHHhhCCCeEEEEcCC---------------------CCCHHhhccCCcEEEEcc
Q 017184          240 IKGKRAVVIGRS--NIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGrs--~~VGkpla~lL~~~gAtVtv~hs~---------------------t~~L~~~l~~ADIVIsAv  293 (375)
                      |+|+++++||=.  +-|.+.++.+|...|++++++.-.                     +.|+.+.+++||+|.+..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            789999999983  235899999999999999998643                     357889999999988655

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.052  Score=45.04  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ++++|+|||.|.+ |...|..|.+.|..|+++++.
T Consensus         4 k~~dVvIIGGGpa-Gl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPA-GYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHcCCceEEEEee
Confidence            6789999999997 999999999999999998653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.98  E-value=0.23  Score=41.61  Aligned_cols=54  Identities=20%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             CEEEEEcCCcccHHHHHH---HHhhC---CCeEEEEcCC--------------------------CCCHHhhccCCcEEE
Q 017184          243 KRAVVIGRSNIVGMPAAL---LLQRE---DATVSIVHSR--------------------------TKNPEEITRQADIII  290 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~---lL~~~---gAtVtv~hs~--------------------------t~~L~~~l~~ADIVI  290 (375)
                      -|++|||+|.+ |.+.+.   ++...   +.++...+..                          +.|+++.++.||+||
T Consensus         3 mKI~iIGaGsv-g~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSA-VFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTCH-HHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             cEEEEECCCHH-HhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            47999999774 866433   33222   2488887653                          357889999999999


Q ss_pred             EccCCCC
Q 017184          291 SAVGQPN  297 (375)
Q Consensus       291 sAvG~p~  297 (375)
                      ++++.+.
T Consensus        82 ~~~~~g~   88 (171)
T d1obba1          82 NTAMVGG   88 (171)
T ss_dssp             ECCCTTH
T ss_pred             eeccccc
Confidence            9998764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.94  E-value=0.19  Score=41.22  Aligned_cols=53  Identities=17%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcCCcc--cHHHHHHHHhhCCCeEEEE-cCC------------------CCCHHhhccCCcEEEEc
Q 017184          240 IKGKRAVVIGRSNI--VGMPAALLLQREDATVSIV-HSR------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       240 l~GK~vvVIGrs~~--VGkpla~lL~~~gAtVtv~-hs~------------------t~~L~~~l~~ADIVIsA  292 (375)
                      |+|++|++||=..-  |.+.++.+|..-|++++++ +..                  +.++.+.+++||+|.+.
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            58999999998665  7999999999999976544 321                  24778899999988743

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.53  E-value=0.28  Score=39.96  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             ccccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC--------------------C
Q 017184          220 LFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK--------------------N  278 (375)
Q Consensus       220 ~~~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~--------------------~  278 (375)
                      ..++|.-...+..+.+..---.|.+|+|+|.|+. |-..+.++...++ .|+++.++..                    +
T Consensus         7 a~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~-g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~   85 (175)
T d1cdoa2           7 CLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAV-GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSE   85 (175)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSS
T ss_pred             HHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCc-cchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcch
Confidence            3457755555666654433346889999999996 6666666777776 6777765421                    1


Q ss_pred             -HHhhc-----cCCcEEEEccCCCCccc--CCCcCC-CcEEEEeeecC
Q 017184          279 -PEEIT-----RQADIIISAVGQPNMVR--GSWIKP-GAVIIDVGINP  317 (375)
Q Consensus       279 -L~~~l-----~~ADIVIsAvG~p~~I~--~~~vk~-gavVIDvgin~  317 (375)
                       .++..     +.+|++|-++|.+....  ..++++ +.+++=+|...
T Consensus        86 ~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          86 PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             hHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC
Confidence             11111     35899999998765432  134444 45666566543

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.51  E-value=0.19  Score=42.49  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEc
Q 017184          239 DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       239 ~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      +|+|.+|+.||=+ +-|.+.++.++...|+++++|+-.                         +.++++.++.||+|.+-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            5789999999954 457999999999999999999632                         35778999999999865


Q ss_pred             c
Q 017184          293 V  293 (375)
Q Consensus       293 v  293 (375)
                      .
T Consensus        82 ~   82 (185)
T d1dxha2          82 V   82 (185)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.46  E-value=0.13  Score=41.40  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  277 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~  277 (375)
                      ++||+|+|||.|+. +---|..|.+.-..||++||..+
T Consensus        32 frgk~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          32 FRNKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GTTSEEEEECCSHH-HHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEEcCchH-HHHHHHHHhCCCCcEEEEEeccc
Confidence            58999999999998 66777888877779999999753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.16  Score=40.36  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++||+|+|||.|.. +---|..|.+-...||++||..
T Consensus        28 ~~gk~V~VvGgG~s-A~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNS-GVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHH-HHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHH-HHHHHHhhhccCCceEEEeccc
Confidence            58999999999997 6677778887777899999875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.53  E-value=0.11  Score=41.92  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      ++++|+|||.|.+ |.-+|..|.+.|++|++.
T Consensus         2 ~~~~VvIIGgG~~-G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLA-GVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHH-HHHHHHHHHHcCCceEEE
Confidence            4789999999986 999999999999866665

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.15  Score=45.73  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=29.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEc
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVH  273 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~h  273 (375)
                      |||+|.|++|-+|..++..|+++|.+|+++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            7999999999999999999999999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.19  E-value=0.14  Score=44.02  Aligned_cols=31  Identities=35%  Similarity=0.494  Sum_probs=28.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||+|-+ |..+|..|+++|..|+|+.+.
T Consensus         6 DvvIIGaGi~-Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGII-GSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999775 999999999999999999764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.11  E-value=0.17  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      +|+|||+|-+ |..+|..|.+.|. .|+|..+..
T Consensus         3 ~V~IvGaG~a-Gl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIG-GLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCCeEEEEeCCC
Confidence            7999999886 9999999999995 899987753

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.86  E-value=0.16  Score=44.16  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCC--eEEEEcCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDA--TVSIVHSR  275 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gA--tVtv~hs~  275 (375)
                      +.|+|+|.|++.-+|+.++..|+++|+  .|..+.|+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~   38 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC
Confidence            468999999988889999999999997  46666655

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=88.82  E-value=0.18  Score=41.61  Aligned_cols=54  Identities=20%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             CCCCEEEEEcC--CcccHHHHHHHHhhCCCeEEEEcCC-----------CCCHHhhccCCcEEEEcc
Q 017184          240 IKGKRAVVIGR--SNIVGMPAALLLQREDATVSIVHSR-----------TKNPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~GK~vvVIGr--s~~VGkpla~lL~~~gAtVtv~hs~-----------t~~L~~~l~~ADIVIsAv  293 (375)
                      ++|.++++||-  .+-|.+.++.+|...|+++++|.-.           +.++.+.++.||+|.+..
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            47999999997  2226999999999999999888533           246789999999988554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.63  E-value=0.17  Score=45.48  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=27.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC--CeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g--AtVtv~hs~  275 (375)
                      |+|+|||+|-. |-.+|..|+++|  ..|++..++
T Consensus         5 KrVaIIGaG~s-Gl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPS-GLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            89999999987 999998888877  489998765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.15  Score=44.06  Aligned_cols=31  Identities=35%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||+|-. |...|..|+++|.+|+|+.++
T Consensus         1 DViVIGaG~a-GL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           1 DVVVVGGGIS-GMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             SEEEECCBHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            4899999886 999999999999999999764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.18  Score=44.88  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CEE-EEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRA-VVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~v-vVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      ||| +|.|++|-+|..++..|+++|++|+.+.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            678 799999999999999999999999987653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.32  E-value=0.5  Score=39.95  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC-------------------CCCHHh----hc--c
Q 017184          231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR-------------------TKNPEE----IT--R  284 (375)
Q Consensus       231 ~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~-------------------t~~L~~----~l--~  284 (375)
                      ..+++.++. .|.+|+|+|+|.+ |...+.++...|+ .|+++.+.                   ..++.+    .+  .
T Consensus        16 ~a~~~a~v~-~G~tVlV~GaG~v-Gl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~   93 (195)
T d1kola2          16 HGAVTAGVG-PGSTVYVAGAGPV-GLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEP   93 (195)
T ss_dssp             HHHHHTTCC-TTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSS
T ss_pred             HHHHHhCCC-CCCEEEEECcCHH-HHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCC
Confidence            345555553 5899999999874 9888888878887 56666433                   233332    32  2


Q ss_pred             CCcEEEEccCCCCc---------------cc--CCCcCCCcEEEEeeecC
Q 017184          285 QADIIISAVGQPNM---------------VR--GSWIKPGAVIIDVGINP  317 (375)
Q Consensus       285 ~ADIVIsAvG~p~~---------------I~--~~~vk~gavVIDvgin~  317 (375)
                      .+|++|-++|.+..               +.  -+.+++|-.|+=+|...
T Consensus        94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            47999999985421               11  12357777788888654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.13  E-value=0.27  Score=41.45  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhC--CCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~--gAtVtv~hs~  275 (375)
                      .+|+|||+|-+ |..+|..|.+.  |++||+..+.
T Consensus         2 ~kv~iIGaGpa-Gl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPA-GFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            38999999998 99999988654  7899998654

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=87.97  E-value=1.1  Score=37.60  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhHhccCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHhhcCCCccEE
Q 017184           97 RDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGI  176 (375)
Q Consensus        97 ~~~lk~~v~~l~~~~g~~P~LaiI~vG~d~aS~~Yv~~k~k~a~~~GI~~~~~~l~~~vs~~el~~~I~~LN~D~~V~GI  176 (375)
                      .+.++++++.+.++.|.+|++.+--+|.|..+.. .+....+++..|+++.+  +..+.+.+|+.+...+-+.|  +-||
T Consensus        20 ~e~lr~~~~~~~~~~gr~pkVlla~~g~D~Hd~G-~~~va~~l~~~G~eVi~--lg~~~~~e~iv~aa~~~~ad--vI~i   94 (168)
T d7reqa2          20 VEEARELVEEFEQAEGRRPRILLAKMGQDGHDRG-QKVIATAYADLGFDVDV--GPLFQTPEETARQAVEADVH--VVGV   94 (168)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCHH-HHHHHHHHHHTTCEEEE--CCTTBCHHHHHHHHHHHTCS--EEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEEeCCccHHHHH-HHHHHHHHHhCCcceec--CCCcCcHHHHHHHHHccCCC--EEEE
Confidence            4678888888877779999999999998764433 45667899999998754  45568999999999887643  4444


Q ss_pred             E
Q 017184          177 L  177 (375)
Q Consensus       177 l  177 (375)
                      =
T Consensus        95 S   95 (168)
T d7reqa2          95 S   95 (168)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.15  Score=44.50  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      |++++|+|||.|++ |-+++..|.+.|. ++++++..
T Consensus        28 L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECCc
Confidence            67899999999995 9999999999996 88888643

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.39  Score=42.67  Aligned_cols=53  Identities=21%  Similarity=0.305  Sum_probs=40.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCC-CeEEEEcCCC----------------------CC-HHhhccCCcEEEEccCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQRED-ATVSIVHSRT----------------------KN-PEEITRQADIIISAVGQP  296 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~g-AtVtv~hs~t----------------------~~-L~~~l~~ADIVIsAvG~p  296 (375)
                      ||+|.|++|-+|+.++..|+++| .+|+.+++.+                      .+ .+...+++|+||..++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~   78 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA   78 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccccc
Confidence            69999999999999999999888 5888875431                      11 223677899999877753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.3  Score=39.18  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +++|+|.|.. |+.++..|..+|..|++...
T Consensus         5 HiII~G~g~~-g~~l~~~L~~~~~~v~vId~   34 (153)
T d1id1a_           5 HFIVCGHSIL-AINTILQLNQRGQNVTVISN   34 (153)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEECCCHH-HHHHHHHHHHcCCCEEEEec
Confidence            6999999985 99999999999998888754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.52  E-value=0.27  Score=42.96  Aligned_cols=31  Identities=29%  Similarity=0.301  Sum_probs=25.7

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      -|+|.|++.-+|+.++..|+++|++|.++.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3566688877899999999999999988643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.46  E-value=0.24  Score=44.35  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      .+-|+++|.|++|.+|+.++..|.++|.+|+.+.+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            35689999999999999999999999999998753

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.21  Score=43.84  Aligned_cols=54  Identities=15%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------CHHhhc--cCCcEEEEccCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------NPEEIT--RQADIIISAVGQ  295 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------~L~~~l--~~ADIVIsAvG~  295 (375)
                      -|+|+|.|++|-+|+.++..|+++|..|.++..+.+       .+.+.+  .+.|.|+.+++.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcchh
Confidence            479999999999999999999999998877644321       123333  346889977754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.14  E-value=0.16  Score=43.89  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             EEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          245 AVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       245 vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      ++|-|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            67889888889999999999999999998763

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.59  E-value=0.21  Score=43.82  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      +++|-|++.-+|+.+|..|+++|++|.++.++.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~   34 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESF   34 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578899998889999999999999999987653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.48  E-value=0.9  Score=35.46  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=41.1

Q ss_pred             CEEEEEcCCcc---cHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccCC
Q 017184          243 KRAVVIGRSNI---VGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       243 K~vvVIGrs~~---VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~  295 (375)
                      |++.|||+|.-   .|.-+...|++.|.+|+-+|.+.         +++.+.-..-|+++.+++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH
Confidence            78999998743   57778888889999999998764         3566666667888887774

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.33  E-value=0.23  Score=41.47  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=27.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCC-------CeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~g-------AtVtv~hs~  275 (375)
                      ++|+|||+|-+ |..+|..|.++|       ..|++..+.
T Consensus         3 ~~VaVIGaGpa-GL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPS-AFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHH-HHHHHHHHHHcCCccccCCCceEEEecC
Confidence            58999999998 999999999887       479998653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.30  E-value=0.17  Score=41.96  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  274 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs  274 (375)
                      +.++|+|||.|.+ |...|..|.+.|..|+++.+
T Consensus         4 ~~~~VvIIGgGpa-Gl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPA-AHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHH-HHHHHHHHHHcCCcEEEEEe
Confidence            5689999999997 99999999999999988863

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.17  E-value=0.33  Score=42.06  Aligned_cols=38  Identities=8%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHh---hCCCeEEEEcCCCCCH
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQ---REDATVSIVHSRTKNP  279 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~---~~gAtVtv~hs~t~~L  279 (375)
                      -|+|+|.|++.-+|+.+|..|+   ++|++|+++.|+...+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~   42 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA   42 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            4899999998888999998885   5789999998875443

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=86.10  E-value=0.46  Score=39.75  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             CCCCCEEEEEcCC-cccHHHHHHHHhhCCCeEEEEcCC-------------------------CCCHHhhccCCcEEEEc
Q 017184          239 DIKGKRAVVIGRS-NIVGMPAALLLQREDATVSIVHSR-------------------------TKNPEEITRQADIIISA  292 (375)
Q Consensus       239 ~l~GK~vvVIGrs-~~VGkpla~lL~~~gAtVtv~hs~-------------------------t~~L~~~l~~ADIVIsA  292 (375)
                      .++|.+++.||=+ +-|...++.++...|+++++|.-.                         +.++.+.++.||+|.+.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4678999999954 447899988888889999998632                         35678899999999865


Q ss_pred             c
Q 017184          293 V  293 (375)
Q Consensus       293 v  293 (375)
                      +
T Consensus        82 ~   82 (183)
T d1duvg2          82 V   82 (183)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=85.88  E-value=0.52  Score=41.97  Aligned_cols=48  Identities=25%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCCC-------CHHhhccCCcEEE
Q 017184          238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-------NPEEITRQADIII  290 (375)
Q Consensus       238 i~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t~-------~L~~~l~~ADIVI  290 (375)
                      ...+||+|+|||.   +  |....+.+++++++|+.++.+       .-++.+.+||+||
T Consensus       118 ~~~~g~kV~vIG~---~--P~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         118 NEVKGKKVGVVGH---F--PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTTSEEEEESC---C--TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEE
T ss_pred             cccCCCEEEEEec---c--hhHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEE
Confidence            4457999999998   2  566667888999999988753       2457889999988

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.86  E-value=0.2  Score=43.46  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||+|-+ |..+|..|.+.|..|+|+.++
T Consensus         4 ~V~IvGaGp~-Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGPS-GLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            6999999865 999999999999999999765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.74  E-value=0.44  Score=38.14  Aligned_cols=46  Identities=26%  Similarity=0.299  Sum_probs=34.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCEEEEE--cCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          225 TPKGCIELLHRYGFDIKGKRAVVI--GRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       225 T~~gvi~lL~~~~i~l~GK~vvVI--Grs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      |+.-++   +  +-..-++.++|+  |.|. +|--+|..|.++|++||++.+..
T Consensus        27 t~~d~l---~--~~~~~~~~vvi~d~ggg~-ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVM---D--GKKKIGKRVVILNADTYF-MAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CHHHHH---H--TCSCCCSEEEEEECCCSS-HHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHh---c--CccccCCceEEEecCCCh-HHHHHHHHHHHcCCeEEEEecCC
Confidence            665543   2  233457888887  6666 59999999999999999998753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=0.28  Score=43.86  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+++|||+|-+ |-.+|..|+++|..|+|..++.
T Consensus         2 ~dv~IIGaG~s-Gl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLF-GAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHH-HHHHHHHHHhCCCcEEEEECCC
Confidence            47999999987 9999999999999999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.28  E-value=0.28  Score=42.85  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=27.2

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      +|+|||+|-+ |-.+|..|+++|. +|+++.+.
T Consensus         3 dViIIGaGi~-G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIV-GTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCcEEEEeCC
Confidence            6999999875 9999999999995 79999765

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.08  E-value=0.74  Score=40.64  Aligned_cols=72  Identities=22%  Similarity=0.253  Sum_probs=52.5

Q ss_pred             CCC-CEEEEEcCCcccHHHHHHHHhhC------CCeEEEEcCCC-C------------------CHHhhccCCcEEEEcc
Q 017184          240 IKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSRT-K------------------NPEEITRQADIIISAV  293 (375)
Q Consensus       240 l~G-K~vvVIGrs~~VGkpla~lL~~~------gAtVtv~hs~t-~------------------~L~~~l~~ADIVIsAv  293 (375)
                      ++| |+|.|||.|.- |++=|+.|..-      |..|+|--|.. +                  +..|.+++||||...+
T Consensus        41 ~kg~KkIaViGYGsQ-G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQ-APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccH-HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            688 99999999986 99999999884      46688864432 1                  2458889999999998


Q ss_pred             CC---CCccc--CCCcCCCcEEEE
Q 017184          294 GQ---PNMVR--GSWIKPGAVIID  312 (375)
Q Consensus       294 G~---p~~I~--~~~vk~gavVID  312 (375)
                      +-   ++...  ...+|+|+.+.-
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             chHHHHHHHHHHHHhcCCCceeee
Confidence            82   22221  126889987654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.23  Score=44.49  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=24.3

Q ss_pred             CEEEEE-cCCcccHHHHHHHHhhCCCeEEEE
Q 017184          243 KRAVVI-GRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       243 K~vvVI-Grs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      |+|+|| |+|.=+|+.+|..|+++|++|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            677766 877777999999999999975544

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.83  E-value=1.1  Score=36.07  Aligned_cols=63  Identities=17%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCc---ccHHHHHHHHhhCCCeEEEEcCCC---------CCHHhhccCCcEEEEccC
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRSN---IVGMPAALLLQREDATVSIVHSRT---------KNPEEITRQADIIISAVG  294 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs~---~VGkpla~lL~~~gAtVtv~hs~t---------~~L~~~l~~ADIVIsAvG  294 (375)
                      ..+.++|.+      -|+++|||+|.   -.|.-++..|.+.|.+|+-+|.+.         +++.+.-..-|+++..++
T Consensus        10 ~~i~~~L~~------~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          10 EDIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             HHHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSC
T ss_pred             HHHHHHHhc------CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeC
Confidence            344555543      48999999883   468888899999999999998764         466666667788888877


Q ss_pred             C
Q 017184          295 Q  295 (375)
Q Consensus       295 ~  295 (375)
                      .
T Consensus        84 ~   84 (139)
T d2d59a1          84 P   84 (139)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.83  E-value=0.34  Score=41.70  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=28.1

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      .|+|||+|-+ |-.+|..|+++|.+|+++.+.
T Consensus         5 DvvIIGaGi~-Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSM-GMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            6999999775 999999999999999999764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.77  E-value=0.67  Score=38.20  Aligned_cols=94  Identities=16%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCCC-------------------C--H
Q 017184          222 IPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRTK-------------------N--P  279 (375)
Q Consensus       222 ~PcT~~gvi~lL~~~~i~l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t~-------------------~--L  279 (375)
                      +.|.-.-.+..+-+..---.|.+|+|+|.|+ +|...++.+...|+ +|+++.+...                   |  .
T Consensus         8 lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGg-vGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~   86 (174)
T d1p0fa2           8 IGCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPI   86 (174)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCCc-hhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHH
Confidence            4553333343433333345699999999988 49999988888997 6777755421                   1  2


Q ss_pred             Hhhc-----cCCcEEEEccCCCCccc--CCCcCC-CcEEEEeeec
Q 017184          280 EEIT-----RQADIIISAVGQPNMVR--GSWIKP-GAVIIDVGIN  316 (375)
Q Consensus       280 ~~~l-----~~ADIVIsAvG~p~~I~--~~~vk~-gavVIDvgin  316 (375)
                      .+..     +.+|++|-++|.+..+.  ...+++ +-.++=+|..
T Consensus        87 ~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          87 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEe
Confidence            2221     35799999988776432  234443 2345555643

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.52  E-value=0.23  Score=44.66  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCCeEEEE
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDATVSIV  272 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gAtVtv~  272 (375)
                      -|+|+|.|++|.||+.++..|+++|..|.++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            3899999999999999999999998765544

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.82  Score=37.22  Aligned_cols=55  Identities=13%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             CCCCEEEEEcCCcc--cHHHHHHHHhhCC-CeEEEEcCC---------------------CCCHHhhccCCcEEEEccC
Q 017184          240 IKGKRAVVIGRSNI--VGMPAALLLQRED-ATVSIVHSR---------------------TKNPEEITRQADIIISAVG  294 (375)
Q Consensus       240 l~GK~vvVIGrs~~--VGkpla~lL~~~g-AtVtv~hs~---------------------t~~L~~~l~~ADIVIsAvG  294 (375)
                      ++|.+++.||=++-  |.+.+..+|...| ..+++|...                     +.++.+.+++||+|.+...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            68999999997654  6888888888886 456776421                     4578889999999987643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.75  E-value=0.35  Score=40.78  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||+|-+ |..+|..|.++|.+|+++.+.
T Consensus         4 DViIIGaG~a-Gl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPS-GLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999886 999999999999999999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.24  E-value=0.47  Score=38.11  Aligned_cols=31  Identities=19%  Similarity=0.407  Sum_probs=28.0

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      +|+|||.|.+ |...|..+.+.|..|++.+++
T Consensus         3 DViIIGgGpa-Gl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPA-GAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHH-HHHHHHHHHHcCCeEEEEEEe
Confidence            6999999997 999999999999999999753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.08  E-value=0.43  Score=40.94  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  276 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~t  276 (375)
                      .+|+|||+|-+ |..+|..|.++|.+|+++.+..
T Consensus         5 ~DViIIGaG~a-Gl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAA-GLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHH-HHHHHHHHHHCCCcEEEEecCC
Confidence            46999999987 9999999999999999998754

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.75  E-value=1.4  Score=34.90  Aligned_cols=56  Identities=25%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             CCCCEEEEEcCC---cccHHHHHHHHhhCC-CeEEEEcCCC---------CCHHhhccCCcEEEEccCC
Q 017184          240 IKGKRAVVIGRS---NIVGMPAALLLQRED-ATVSIVHSRT---------KNPEEITRQADIIISAVGQ  295 (375)
Q Consensus       240 l~GK~vvVIGrs---~~VGkpla~lL~~~g-AtVtv~hs~t---------~~L~~~l~~ADIVIsAvG~  295 (375)
                      ++-|+|+|||+|   +-.|.-+...|...+ .+|+-+|.+.         +++.+.=...|+++.+++.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~   74 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK   74 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecCh
Confidence            567999999998   556777888887665 4899998764         3555665677888888874

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.03  E-value=1.9  Score=32.95  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCC---------cccHHHHHHHHhhCCCeEEEEcCC------------CCCHHhhccC
Q 017184          227 KGCIELLHRYGFDIKGKRAVVIGRS---------NIVGMPAALLLQREDATVSIVHSR------------TKNPEEITRQ  285 (375)
Q Consensus       227 ~gvi~lL~~~~i~l~GK~vvVIGrs---------~~VGkpla~lL~~~gAtVtv~hs~------------t~~L~~~l~~  285 (375)
                      .-+++.|+....++  |+|.|+|-+         +.-...+...|.+.|++|.++.-.            ..++.+.+..
T Consensus         2 k~ii~~l~~~~~~~--k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~   79 (108)
T d1dlja3           2 KQIINVLKEQESPV--KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQ   79 (108)
T ss_dssp             HHHHHHHTTSCCSS--CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHH
T ss_pred             HHHHHHHHhccCCC--CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhh
Confidence            44667776654433  689999853         223567788888999999987532            2478888999


Q ss_pred             CcEEEEccCCCCc
Q 017184          286 ADIIISAVGQPNM  298 (375)
Q Consensus       286 ADIVIsAvG~p~~  298 (375)
                      +|+||.......+
T Consensus        80 sDiII~~~~~~~~   92 (108)
T d1dlja3          80 ANIIVTNRYDNEL   92 (108)
T ss_dssp             CSEEECSSCCGGG
T ss_pred             CCEEEEcCCchHH
Confidence            9998876665443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.74  E-value=0.18  Score=40.54  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=26.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhhCCCeEE
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVS  270 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~~gAtVt  270 (375)
                      ...||+|+|||.|.+ |.-+|..|.+.|+.++
T Consensus        26 ~~~gkrVvVIGgG~~-g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          26 APVGNKVAIIGCGGI-GFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CCCCSEEEEECCHHH-HHHHHHHHTCCSSCGG
T ss_pred             cccCCceEEEcCchh-HHHHHHHHHHcCCccc
Confidence            346999999999886 9999999999998643

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.69  E-value=0.68  Score=36.95  Aligned_cols=45  Identities=16%  Similarity=0.251  Sum_probs=33.5

Q ss_pred             EEEEEcCCcccHHHHHHHHhhCCCeEEEE-cCCCCCHHhhccCCcEEEE
Q 017184          244 RAVVIGRSNIVGMPAALLLQREDATVSIV-HSRTKNPEEITRQADIIIS  291 (375)
Q Consensus       244 ~vvVIGrs~~VGkpla~lL~~~gAtVtv~-hs~t~~L~~~l~~ADIVIs  291 (375)
                      |+.|+|++|-+|+.++..+.++|.++... ++   +..+.+.++|+||=
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~---~~~~~~~~~DVvID   47 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV---NGVEELDSPDVVID   47 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEET---TEEEECSCCSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECC---CcHHHhccCCEEEE
Confidence            68999985667999999999999876543 32   33455678898883

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.36  E-value=1.1  Score=34.31  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHhh---CCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQR---EDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~~---~gAtVtv~hs~t  276 (375)
                      ..|+++|||.|-+ |--+|..|.+   +|.+||++++..
T Consensus        19 ~p~~v~ivGgG~i-g~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFI-SVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHH-HHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHH-HHHHHHHhhhcccCCcEEEEEeccc
Confidence            4789999999885 9999976654   456899998764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.85  E-value=0.51  Score=41.31  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHhhCCCeEEEEcCC
Q 017184          243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  275 (375)
Q Consensus       243 K~vvVIGrs~~VGkpla~lL~~~gAtVtv~hs~  275 (375)
                      -.|+|||.|.+ |...|..|+++|++|+++.+.
T Consensus        17 ~DVlVIG~G~a-Gl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          17 VDVVVVGSGGA-GFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            47999999887 999999999999999999754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=0.51  Score=45.09  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCCC
Q 017184          240 IKGKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSRT  276 (375)
Q Consensus       240 l~GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~t  276 (375)
                      |++.+|+|||.|++ |-.++..|...|. ++++++..+
T Consensus        35 l~~~kVlvvG~Ggl-G~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          35 LDTCKVLVIGAGGL-GCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHCCEEEECSSTT-HHHHHHHHHTTTCCCEEEECCCB
T ss_pred             HhcCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCC
Confidence            45679999999996 9999999999996 899987553

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.76  Score=36.34  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHh----hCCCeEEEEcCCC
Q 017184          241 KGKRAVVIGRSNIVGMPAALLLQ----REDATVSIVHSRT  276 (375)
Q Consensus       241 ~GK~vvVIGrs~~VGkpla~lL~----~~gAtVtv~hs~t  276 (375)
                      .+|+++|||.|-+ |--+|..|.    +.|.+||+.++..
T Consensus        36 ~~k~i~IvGgG~~-G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFL-GSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHH-HHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECCCHH-HHHHHHHHHHHHHhcCCEEEEecccc
Confidence            4689999999886 988888775    4589999998764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.30  E-value=1.2  Score=33.90  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHhh---CCCeEEEEcCCC
Q 017184          239 DIKGKRAVVIGRSNIVGMPAALLLQR---EDATVSIVHSRT  276 (375)
Q Consensus       239 ~l~GK~vvVIGrs~~VGkpla~lL~~---~gAtVtv~hs~t  276 (375)
                      +-..|+++|||.|-+ |--+|..|.+   .|..|++..+..
T Consensus        15 ~~~p~~v~IiGgG~i-g~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          15 DEAPKRALCVGGGYI-SIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SSCCSEEEEECSSHH-HHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             cccCCeEEEECCChH-HHHHHHHhHhhcccccccceecccc
Confidence            334689999999886 9999977654   488999998753

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=80.06  E-value=0.69  Score=39.84  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHhhCCC-eEEEEcCC
Q 017184          242 GKRAVVIGRSNIVGMPAALLLQREDA-TVSIVHSR  275 (375)
Q Consensus       242 GK~vvVIGrs~~VGkpla~lL~~~gA-tVtv~hs~  275 (375)
                      ++.++|.|+++-+|+.++..|+++|+ .|.++.|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            46899999888789999999999998 47777654