Citrus Sinensis ID: 017245

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MDTKSGNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
cccccccccccEEEEEHHHHHHHHHHHHHHHHccccccccEEEcccccEEccccccHHHHHHHHHHHcccccccccccEEEEEEccEEccccccccccccccccccccEEEEEEEEccEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHccccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEccccEEEcccccEEEEEEccEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHcccEEEEEcccccEEEEEEEccEEcccccccHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccEEEEEEEEEEEEEEEEHHHHHHHHEEEEEEEEcccccEEEEEccHHHHHHHHHcccccccccccccccEEEEcccEccHHHcEEEEEccEEEcccccEEEEEEEcccEEEHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEEEccccHHHHHcccEEEEEEccccccccHHcccHHHHHHHHHHHHHHHccccEEEEEccccEEEEccccEEEEEEccEEEccccHHHHHcHHcHHHHHHHHHHHcHHccccEEEEEEccHHHHEEHcHEEEcccccEEEEEEEEcccEcccccccHHHHHHHHHHHHHHccccccccccccccc
mdtksgnfpffpvKVTVHVLRFCLVIYCLCLKFCVSCLFsveaengsefkahmFSSSSELLQKLQEKWSsvkkkpypamyssifggiildpammvipiddhmvhrghgvfdTAIILNGYLYELDVHLDRFLRSAVSarisspfprsTLRSILVQLTAAsqckkgtlrfwltagpgdfllspagcptsafYAVVidddfsqckEGVKVitssipmkprlfATVKNVNYLPNVLAKMEaedkgasasiwidedgyvaegpnvnvafithdkelvLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLpllaitvwdeqpigdgnvGELTMALSDLLWEdmvagpetqrhcvsydq
mdtksgnfpffpVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSarisspfprsTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVitssipmkprlFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKlveqgrlksvktanLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
MDTKSGNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFssssellqklqekWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
*******FPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAE**************************VKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG************
*****GN*PFFPVKVTVHVLRFCLVIYCLCLKFCV******************************************AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYD*
MDTKSGNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
*****GNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVS***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDTKSGNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q8L493373 Branched-chain-amino-acid yes no 0.789 0.793 0.595 1e-100
O29329290 Putative branched-chain-a yes no 0.664 0.858 0.280 2e-21
Q58414288 Putative branched-chain-a yes no 0.709 0.923 0.263 6e-20
P54692283 D-alanine aminotransferas no no 0.725 0.961 0.287 4e-19
O07597282 D-alanine aminotransferas yes no 0.72 0.957 0.260 5e-14
Q92B90289 D-alanine aminotransferas yes no 0.677 0.878 0.265 3e-13
Q8W0Z7555 Branched-chain-amino-acid no no 0.682 0.461 0.264 1e-12
P19938283 D-alanine aminotransferas N/A no 0.698 0.925 0.254 3e-12
Q71Z49289 D-alanine aminotransferas yes no 0.677 0.878 0.254 4e-12
Q9ASR4559 Branched-chain-amino-acid no no 0.770 0.516 0.256 1e-11
>sp|Q8L493|BCAL3_ARATH Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1 Back     alignment and function desciption
 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/297 (59%), Positives = 225/297 (75%), Gaps = 1/297 (0%)

Query: 78  AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSA 137
           AMYSS+  GI  DPA MV+P+DDHMVHRGHGVFDTA+I+NGYLYELD HLDR LRSA  A
Sbjct: 77  AMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYLYELDQHLDRILRSASMA 136

Query: 138 RISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD 197
           +I  PF R T++ IL+Q  + S C+ G+LR+WL+AGPGDFLLSP+ C     YA+VI  +
Sbjct: 137 KIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLSPSQCLKPTLYAIVIKTN 196

Query: 198 FSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 257
           F+    GVKV+TSSIP+KP  FATVK+VNYLPNVL++MEAE KGA A IW+ +DG++AEG
Sbjct: 197 FAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEG 256

Query: 258 PNVNVAFITH-DKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 316
           PN+NVAF+ +  KELV+P FD +LSGCTAKR L LA +LV +G LK+VK  ++TV++ K 
Sbjct: 257 PNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKK 316

Query: 317 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSY 373
           A EMM +GS +P+  +  WDE+ IG+G  G +  AL DLL EDM +GP + R  V Y
Sbjct: 317 ADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373

Arabidopsis thaliana (taxid: 3702)
>sp|O29329|ILVE_ARCFU Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|Q58414|ILVE_METJA Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|P54692|DAAA_BACLI D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O07597|DAAA_BACSU D-alanine aminotransferase OS=Bacillus subtilis (strain 168) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q92B90|DAAA_LISIN D-alanine aminotransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q8W0Z7|BCAL1_ARATH Branched-chain-amino-acid aminotransferase-like protein 1 OS=Arabidopsis thaliana GN=At3g05190 PE=2 SV=1 Back     alignment and function description
>sp|P19938|DAAA_BACYM D-alanine aminotransferase OS=Bacillus sp. (strain YM-1) GN=dat PE=1 SV=2 Back     alignment and function description
>sp|Q71Z49|DAAA_LISMF D-alanine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q9ASR4|BCAL2_ARATH Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
359493821351 PREDICTED: branched-chain-amino-acid ami 0.885 0.945 0.822 1e-162
255564585345 D-alanine aminotransferase, putative [Ri 0.888 0.965 0.814 1e-160
388513425348 unknown [Lotus japonicus] 0.890 0.959 0.790 1e-158
388508724344 unknown [Medicago truncatula] 0.885 0.965 0.801 1e-157
224117116338 predicted protein [Populus trichocarpa] 0.896 0.994 0.815 1e-155
217073220343 unknown [Medicago truncatula] 0.882 0.965 0.798 1e-155
449456615348 PREDICTED: branched-chain-amino-acid ami 0.882 0.951 0.795 1e-154
363808216331 uncharacterized protein LOC100798871 [Gl 0.792 0.897 0.824 1e-138
356546858321 PREDICTED: LOW QUALITY PROTEIN: branched 0.789 0.922 0.799 1e-132
357127771328 PREDICTED: branched-chain-amino-acid ami 0.848 0.969 0.688 1e-131
>gi|359493821|ref|XP_003634673.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Vitis vinifera] gi|302142961|emb|CBI20256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/332 (82%), Positives = 304/332 (91%)

Query: 42  EAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDH 101
           E E  +EF+ H+FSSSSEL++KL EKW S K+KPYPAMYSS+FGGIILDPAMMVIPIDDH
Sbjct: 19  EVERDTEFRVHVFSSSSELVEKLHEKWDSGKEKPYPAMYSSVFGGIILDPAMMVIPIDDH 78

Query: 102 MVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161
           MVHRGHGVFDT+IILNGYLYELD HLDRFLRSA  A+ISSPFPRSTLRSILVQLTAAS+C
Sbjct: 79  MVHRGHGVFDTSIILNGYLYELDAHLDRFLRSAAKAKISSPFPRSTLRSILVQLTAASRC 138

Query: 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFAT 221
            +GTLRFWLT+GPG+FLLSP+GCPTSAFYAVVI D   Q +EGVKVITS+IPMK  LFAT
Sbjct: 139 TEGTLRFWLTSGPGNFLLSPSGCPTSAFYAVVIKDKIYQHREGVKVITSTIPMKSPLFAT 198

Query: 222 VKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILS 281
            KNVNYLPNVL+ MEAE+KGA ASIW+DE+GY+AEGPNVNVAFITHDKEL+LPFFDKILS
Sbjct: 199 TKNVNYLPNVLSVMEAEEKGAFASIWVDEEGYIAEGPNVNVAFITHDKELILPFFDKILS 258

Query: 282 GCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIG 341
           GCTAKRLLELAPKLVEQGRLK V+TAN+TV+EAKG+AEMMYVGSTLPLL I +WDE+PIG
Sbjct: 259 GCTAKRLLELAPKLVEQGRLKDVRTANVTVEEAKGSAEMMYVGSTLPLLPIVMWDEKPIG 318

Query: 342 DGNVGELTMALSDLLWEDMVAGPETQRHCVSY 373
           DG VGELTMALSDLLW+DMVAGP+T R  V+Y
Sbjct: 319 DGLVGELTMALSDLLWDDMVAGPKTHRLLVTY 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564585|ref|XP_002523288.1| D-alanine aminotransferase, putative [Ricinus communis] gi|223537501|gb|EEF39127.1| D-alanine aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388513425|gb|AFK44774.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388508724|gb|AFK42428.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224117116|ref|XP_002317480.1| predicted protein [Populus trichocarpa] gi|222860545|gb|EEE98092.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217073220|gb|ACJ84969.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449456615|ref|XP_004146044.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] gi|449520477|ref|XP_004167260.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363808216|ref|NP_001242488.1| uncharacterized protein LOC100798871 [Glycine max] gi|255641780|gb|ACU21159.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356546858|ref|XP_003541839.1| PREDICTED: LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357127771|ref|XP_003565551.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2174433373 ADCL "4-amino-4-deoxychorismat 0.789 0.793 0.595 3.9e-92
TIGR_CMR|CHY_0515293 CHY_0515 "branched-chain amino 0.661 0.846 0.270 1e-22
UNIPROTKB|P54692283 dat "D-alanine aminotransferas 0.725 0.961 0.287 1.5e-21
TIGR_CMR|BA_1416298 BA_1416 "branched-chain amino 0.669 0.842 0.281 2.4e-21
TIGR_CMR|BA_1849299 BA_1849 "branched-chain amino 0.698 0.876 0.260 1.4e-18
UNIPROTKB|O07597282 dat "D-alanine aminotransferas 0.72 0.957 0.260 5.6e-17
TIGR_CMR|SPO_3604286 SPO_3604 "D-amino acid aminotr 0.645 0.846 0.267 9.2e-15
TIGR_CMR|BA_2256291 BA_2256 "D-amino acid aminotra 0.712 0.917 0.240 1.3e-14
UNIPROTKB|Q92B90289 dat "D-alanine aminotransferas 0.674 0.875 0.278 4.3e-14
TIGR_CMR|BA_5472290 BA_5472 "D-amino acid aminotra 0.664 0.858 0.261 2.2e-13
TAIR|locus:2174433 ADCL "4-amino-4-deoxychorismate lyase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 177/297 (59%), Positives = 225/297 (75%)

Query:    78 AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSA 137
             AMYSS+  GI  DPA MV+P+DDHMVHRGHGVFDTA+I+NGYLYELD HLDR LRSA  A
Sbjct:    77 AMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYLYELDQHLDRILRSASMA 136

Query:   138 RISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD 197
             +I  PF R T++ IL+Q  + S C+ G+LR+WL+AGPGDFLLSP+ C     YA+VI  +
Sbjct:   137 KIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLSPSQCLKPTLYAIVIKTN 196

Query:   198 FSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 257
             F+    GVKV+TSSIP+KP  FATVK+VNYLPNVL++MEAE KGA A IW+ +DG++AEG
Sbjct:   197 FAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEG 256

Query:   258 PNVNVAFITHD-KELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 316
             PN+NVAF+ +  KELV+P FD +LSGCTAKR L LA +LV +G LK+VK  ++TV++ K 
Sbjct:   257 PNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKK 316

Query:   317 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSY 373
             A EMM +GS +P+  +  WDE+ IG+G  G +  AL DLL EDM +GP + R  V Y
Sbjct:   317 ADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0008153 "para-aminobenzoic acid biosynthetic process" evidence=IDA
GO:0008696 "4-amino-4-deoxychorismate lyase activity" evidence=IGI
GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|CHY_0515 CHY_0515 "branched-chain amino acid aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P54692 dat "D-alanine aminotransferase" [Bacillus licheniformis (taxid:1402)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1416 BA_1416 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1849 BA_1849 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|O07597 dat "D-alanine aminotransferase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3604 SPO_3604 "D-amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2256 BA_2256 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q92B90 dat "D-alanine aminotransferase" [Listeria innocua Clip11262 (taxid:272626)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5472 BA_5472 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L493BCAL3_ARATHNo assigned EC number0.59590.78930.7935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XI0275
aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.V.3049.1
2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)
•    •• 0.909
estExt_fgenesh4_pm.C_LG_III0598
hypothetical protein (605 aa)
•    •• 0.909
estExt_fgenesh4_pg.C_LG_I0451
hypothetical protein (611 aa)
•    •• 0.909
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
     •  0.899
gw1.X.4012.1
isoleucyl-tRNA synthetase (1029 aa)
     •  0.899
gw1.VII.873.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1117 aa)
     •  0.899
gw1.V.2491.1
hypothetical protein (391 aa)
     •  0.899
gw1.III.165.1
hypothetical protein (320 aa)
     •  0.899
gw1.64.262.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)
     •  0.899
fgenesh4_pm.C_LG_XIV000150
ketopantoate hydroxymethyltransferase (EC-2.1.2.11) (335 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
PLN02845336 PLN02845, PLN02845, Branched-chain-amino-acid amin 0.0
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 1e-72
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 2e-57
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 3e-42
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 3e-36
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 7e-36
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 5e-34
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 3e-25
TIGR01121276 TIGR01121, D_amino_aminoT, D-amino acid aminotrans 3e-24
TIGR01122298 TIGR01122, ilvE_I, branched-chain amino acid amino 8e-24
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 3e-22
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 1e-21
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 1e-17
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 6e-16
PRK12400290 PRK12400, PRK12400, D-amino acid aminotransferase; 1e-15
PRK07650283 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas 3e-15
TIGR01123313 TIGR01123, ilvE_II, branched-chain amino acid amin 1e-08
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 3e-08
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 5e-08
PRK13357356 PRK13357, PRK13357, branched-chain amino acid amin 8e-08
PRK07544292 PRK07544, PRK07544, branched-chain amino acid amin 4e-04
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
 Score =  566 bits (1461), Expect = 0.0
 Identities = 208/330 (63%), Positives = 258/330 (78%), Gaps = 1/330 (0%)

Query: 46  GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 105
           GS  K     S++E++Q+LQ KWS  KK+ + AMYSS+ GGI  DPA MVIP+DDHMVHR
Sbjct: 7   GSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHR 66

Query: 106 GHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGT 165
           GHGVFDTA I +G+LYELD HLDRFLRSA  A+I  PF R+TLR IL+Q  AAS C+ G+
Sbjct: 67  GHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGS 126

Query: 166 LRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQC-KEGVKVITSSIPMKPRLFATVKN 224
           LR+WL+AGPG F LSP+GC   AFYAVVI+D ++Q   EGVKV+TSS+P+KP  FATVK+
Sbjct: 127 LRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKS 186

Query: 225 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 284
           VNYLPN L++MEAE++GA A IW+DE+G+VAEGPN+NVAF+T+D ELVLP FDKILSGCT
Sbjct: 187 VNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCT 246

Query: 285 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN 344
           A+R+LELAP+LV  G L+ VK   ++V+EAK A EMM +GS +P+L I  WD QPIGDG 
Sbjct: 247 ARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGK 306

Query: 345 VGELTMALSDLLWEDMVAGPETQRHCVSYD 374
           VG +T+AL DLL +DM +GP   R  V Y 
Sbjct: 307 VGPITLALHDLLLDDMRSGPPGVRTPVPYG 336

Length = 336
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK13356286 aminotransferase; Provisional 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
PRK09266266 hypothetical protein; Provisional 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PRK07101187 hypothetical protein; Provisional 100.0
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
Probab=100.00  E-value=1.1e-71  Score=548.21  Aligned_cols=332  Identities=62%  Similarity=1.040  Sum_probs=303.4

Q ss_pred             cccccCCCccccceecChHHHHHHHHhccCCcccccccccccceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCe
Q 017245           40 SVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY  119 (375)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~  119 (375)
                      ++.|+||++.-.|++ ++++++|||+++|..++.+++.|||++|+||++++++++.||++|||++||||+||||++++|+
T Consensus         2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~   80 (336)
T PLN02845          2 PSVVPGSRTKVPPLL-SAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGH   80 (336)
T ss_pred             CCCCCCCCCcCCccc-cHHHHHHHHHhhhccccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCE
Confidence            457889888888999 9999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC
Q 017245          120 LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS  199 (375)
Q Consensus       120 i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~  199 (375)
                      +++|++|++||.+||+.|+|+.|++.+++++.+.+++++++..++.||+++++|.|++++.+..++.+.+++.+.+.++.
T Consensus        81 ~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~  160 (336)
T PLN02845         81 LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYA  160 (336)
T ss_pred             EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccc
Confidence            99999999999999999999988999999999999999988889999999999988777766656677787776554433


Q ss_pred             c-CCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCCC
Q 017245          200 Q-CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK  278 (375)
Q Consensus       200 ~-~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~~  278 (375)
                      . ..+|+++.++++++.++.++++|+.||+.+++++++|+++|+||+||+|++|+|+|++++|+||+.++|+|+||++++
T Consensus       161 ~~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~  240 (336)
T PLN02845        161 QDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDK  240 (336)
T ss_pred             ccccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCC
Confidence            3 268999988887776666789999999999999999999999999999999999999999997766799999999988


Q ss_pred             ccccHHHHHHHHHhhhhhhCC--CcceEEEEEcCHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHH
Q 017245          279 ILSGCTAKRLLELAPKLVEQG--RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL  356 (375)
Q Consensus       279 iL~GiTR~~vlela~~l~~~G--~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~  356 (375)
                      +|+||||+.|+++|+++.+.|  +  +|+|+.++++||.+|||+|+|||++||+||++|||+.+++|++||++++|+++|
T Consensus       241 iL~GItR~~vlela~~~~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~  318 (336)
T PLN02845        241 ILSGCTARRVLELAPRLVSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLL  318 (336)
T ss_pred             cCccHHHHHHHHHHHhhhccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHH
Confidence            999999999999999763336  6  899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCcccccCC
Q 017245          357 WEDMVAGPETQRHCVSYD  374 (375)
Q Consensus       357 ~~~i~~g~~~~~~~v~y~  374 (375)
                      ++....++.+.++|++|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~  336 (336)
T PLN02845        319 LDDMRSGPPGVRTPVPYG  336 (336)
T ss_pred             HHHHhcCCCccceeccCC
Confidence            988888878888999995

>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3daa_A277 Crystallographic Structure Of D-Amino Acid Aminotra 3e-13
1daa_A282 Crystallographic Structure Of D-Amino Acid Aminotra 3e-13
3lqs_A280 Complex Structure Of D-Amino Acid Aminotransferase 3e-13
5daa_A277 E177k Mutant Of D-Amino Acid Aminotransferase Compl 9e-13
1wrv_A308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 1e-12
1g2w_A282 E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D 1e-12
1a0g_A282 L201a Mutant Of D-Amino Acid Aminotransferase Compl 1e-12
3u0g_A328 Crystal Structure Of Branched-Chain Amino Acid Amin 1e-09
2y4r_A292 Crystal Structure Of 4-Amino-4-Deoxychorismate Lyas 1e-07
2zgi_A246 Crystal Structure Of Putative 4-Amino-4-Deoxychoris 5e-07
1i1k_A309 Crystal Structure Of Eschelichia Coli Branched-chai 1e-04
1a3g_A308 Branched-chain Amino Acid Aminotransferase From Esc 2e-04
3ht5_A368 Crystal Structure Of Ilve A Branched Chain Amino Ac 3e-04
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 21/280 (7%)
Query: 82  SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 141
           +++   I+    + I  +D     G GV++   + NG ++ ++ H+DR   SA   RI+ 
Sbjct: 3   TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 142 PFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGC--PTSAFYAVVID---- 195
           P+ +     +L +L   ++   G + F +T G      SP     P +    V+I     
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGHIYFQVTRG-----TSPRAHQFPENTVKPVIIGYTKE 117
Query: 196 --DDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGY 253
                   ++GVK   + +     L   +K++N L  VLAK EA +KG   +I +  +  
Sbjct: 118 NPRPLENLEKGVKA--TFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNT 174
Query: 254 VAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 313
           V EG + NV  I        P  + IL G T   ++  A ++        VK    T  E
Sbjct: 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHE 229
Query: 314 AKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 353
           A    E+    +T  +  +   D + I DG VGE T  L 
Sbjct: 230 ALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280 Back     alignment and structure
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277 Back     alignment and structure
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282 Back     alignment and structure
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From Pseudomonas Aeruginosa Length = 292 Back     alignment and structure
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase Length = 246 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 3e-43
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 1e-42
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 5e-42
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 2e-41
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 2e-41
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 3e-32
3u0g_A328 Putative branched-chain amino acid aminotransfera; 4e-31
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 7e-30
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 2e-29
1iye_A309 Branched-chain amino acid aminotransferase; hexame 2e-28
3qqm_A221 MLR3007 protein; structural genomics, joint center 3e-24
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 4e-14
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 2e-10
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 2e-09
3dth_A372 Branched-chain amino acid aminotransferase; open t 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
 Score =  150 bits (381), Expect = 3e-43
 Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 22/271 (8%)

Query: 95  VIPIDDHMVHRGH---GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSI 151
              ID     R     G+F+T  + +       +H +R   SA    I            
Sbjct: 16  SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71

Query: 152 LVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSS 211
           L+Q         G ++  L+ GP    L+  G  +   +      ++S  K  V++I+ +
Sbjct: 72  LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQTF---NYSIQKHPVRLISIN 128

Query: 212 -IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 270
            +  K      +K+VNYL  ++A+ +A   GA  +++ + + +V E    N+ F+  +  
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANL-FLIENNI 187

Query: 271 LVLPFFDK-ILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLP 328
           L  P  +  IL G T  RL+    +  +       V+  +LT    + A  +    S   
Sbjct: 188 LYTPRVEDGILPGITRARLISHCQQHKMS------VQEISLTKKRIEDADAVFLTNSLQG 241

Query: 329 LLAITVWDEQPIGDGNVGELTMALSDLLWED 359
           +  +   D           +   L  LL +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
Probab=100.00  E-value=1e-61  Score=464.67  Aligned_cols=270  Identities=24%  Similarity=0.327  Sum_probs=245.0

Q ss_pred             ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245           82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC  161 (375)
Q Consensus        82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~  161 (375)
                      .|+||++++++++.|+++||++||||||||||++++|++|+|++|++||.+||++|+|+.|++.+++++.|.+++++++.
T Consensus         3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~g~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~   82 (277)
T 3daa_A            3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL   82 (277)
T ss_dssp             EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred             EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEECCEEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999999999999999999999999999999999999999889999999999999999998


Q ss_pred             CCeeEEEEEecCCCCcccCCC-CCCCceEEEEEEeCCCCc--CCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHH
Q 017245          162 KKGTLRFWLTAGPGDFLLSPA-GCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAE  238 (375)
Q Consensus       162 ~~g~iR~~vs~G~g~~~~~p~-~~~~~~~~~~~~~~p~~~--~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~  238 (375)
                      .+++||+++++|.+..++..+ .+..+.+++.+.+.+.+.  ..+|+++.+++..  .+.++++|++||++|++++++|+
T Consensus        83 ~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~~--r~~~~~~Kt~nyl~~~la~~eA~  160 (277)
T 3daa_A           83 NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI--RWLRCDIKSLNLLGAVLAKQEAH  160 (277)
T ss_dssp             CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEECC--CCSCTTSCBSCCHHHHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecCc--cccCCCcchhhhHHHHHHHHHHH
Confidence            999999999999776554433 345678888877665322  3579999887543  34578999999999999999999


Q ss_pred             hcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhcc
Q 017245          239 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA  317 (375)
Q Consensus       239 ~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~a  317 (375)
                      ++|+||+||+| +|+|+|++++|+| +++||+|+||+++ ++|+||||+.++++|+++   |+  +|+|+.++++||.+|
T Consensus       161 ~~g~~e~l~l~-~g~v~E~~~sNif-~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~---g~--~v~e~~i~~~el~~a  233 (277)
T 3daa_A          161 EKGCYEAILHR-NNTVTEGSSSNVF-GIKDGILYTHPANNMILKGITRDVVIACANEI---NM--PVKEIPFTTHEALKM  233 (277)
T ss_dssp             HTTCSEEEEEE-TTEEEEETTBEEE-EEETTEEEECCSSTTSCCCHHHHHHHHHHHHT---TC--CEECCCCBHHHHHTC
T ss_pred             HCCCCEEEEEc-CCEEEEcCceEEE-EEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--eEEEEeCCHHHHHhc
Confidence            99999999997 8999999999995 5689999999996 799999999999999998   87  999999999999999


Q ss_pred             ceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHh
Q 017245          318 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM  360 (375)
Q Consensus       318 dEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i  360 (375)
                      ||+|+|||++||+||.+||++.+++|++||++++|+++|.+.|
T Consensus       234 devf~~ns~~~i~pV~~id~~~~~~g~~g~~t~~L~~~~~~~i  276 (277)
T 3daa_A          234 DELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKI  276 (277)
T ss_dssp             SEEEEEETTTEEEEEEEETTEESTTSSCCHHHHHHHHHHHTTC
T ss_pred             CeeeeecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998543
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 2e-31
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 1e-29
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 3e-19
d2a1ha1363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 3e-06
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score =  117 bits (294), Expect = 2e-31
 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 7/278 (2%)

Query: 82  SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 141
           +++   I+    + I  +D     G GV++   + NG ++ ++ H+DR   SA   RI+ 
Sbjct: 3   TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62

Query: 142 PFPRSTLRSILVQLTAASQCKKGTLRFWL-TAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ 200
           P+ +     +L +L   ++   G + F +           P             ++    
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122

Query: 201 CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNV 260
                 V  + +     L   +K++N L  VLAK EA +KG   +I    +  V EG + 
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHR-NNTVTEGSSS 181

Query: 261 NVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEM 320
           NV  I        P  + IL G T   ++  A ++    +         T  EA    E+
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEI-----PFTTHEALKMDEL 236

Query: 321 MYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 358
               +T  +  +   D + I DG VGE T  L      
Sbjct: 237 FVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFET 274
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-59  Score=449.82  Aligned_cols=283  Identities=20%  Similarity=0.286  Sum_probs=253.1

Q ss_pred             ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCe----ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 017245           82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY----LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA  157 (375)
Q Consensus        82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~----i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~  157 (375)
                      .|+||++++.+++.||+.||||+||||||||||+++|+    +|+|++|++||.+||+.++|+.|.+.+++.+++.++++
T Consensus         5 i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~v~   84 (304)
T d1iyea_           5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR   84 (304)
T ss_dssp             EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred             EEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHHHH
Confidence            68999999999999999999999999999999999886    89999999999999999999999999999999999999


Q ss_pred             hcCCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc----CCCCeEEEEeeeecCCC---CCCCCcccCChHH
Q 017245          158 ASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ----CKEGVKVITSSIPMKPR---LFATVKNVNYLPN  230 (375)
Q Consensus       158 ~~~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~----~~~Gv~l~~s~~~~~~~---~~~~iKt~nyl~~  230 (375)
                      +++..++++|+.++++.+..++.++....+..++.+.+.+...    ...|+++.+++..|..+   ....+|++||+.+
T Consensus        85 ~n~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~  164 (304)
T d1iyea_          85 KNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSS  164 (304)
T ss_dssp             HTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHH
T ss_pred             hcccccceEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEeeccccCCCCcccccccccCcccc
Confidence            9999999999999998887777666555666666665533221    25689988887766533   3567789999999


Q ss_pred             HHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEc
Q 017245          231 VLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANL  309 (375)
Q Consensus       231 vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i  309 (375)
                      +++.++|+++|+||+|++|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.|+++|+++   |+  +|+|+++
T Consensus       165 ~~a~~~A~~~g~deal~ld~~g~v~E~s~sNi-f~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~---gi--~v~e~~i  238 (304)
T d1iyea_         165 LLVGSEARRHGYQEGIALDVNGYISEGAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL---GI--EVREQVL  238 (304)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEETTBEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCC
T ss_pred             chhhhHHHHcCCcceeeecccCeEeecCceeE-EEEeCCEEEEeecccccCCchHHHHHHHHhhhc---cc--ceeeccC
Confidence            99999999999999999999999999999999 55699999999985 899999999999999998   97  9999999


Q ss_pred             CHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhcCCCC----Ccccc
Q 017245          310 TVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPET----QRHCV  371 (375)
Q Consensus       310 ~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~g~~~----~~~~v  371 (375)
                      +++||.+|||+|+|||+.||+||++|||+.+++|++||+|++|+++|. +++.|...    |..+|
T Consensus       239 ~~~~L~~AdEvfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~-~i~~g~~~~~~~W~~~v  303 (304)
T d1iyea_         239 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFF-GLFTGETEDKWGWLDQV  303 (304)
T ss_dssp             BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-GGGTTSSCCCSCCEEEC
T ss_pred             CHHHHHhhCHHhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHH-HHHcCCCCCCCCCCeEC
Confidence            999999999999999999999999999999999999999999999997 78887663    55555
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure