Citrus Sinensis ID: 017268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Secondary Structure (PSIPRED)
ccEEEEEcccccccccHHHHHHHHHHHcccccccccccEEEEEccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEcccHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHcccccHHccccccccccccccccEEEEEcccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEccccccccHHHHHHHHHHHccEEEEEEccccccccccccccccEEEHHHHHHcHHHHcccEEccc
Coil and Loop (DISEMBL)
mdvfnvidcdgkkirDKEVIDYIQQRLetdasfapslrssvgvmpteehtsieftgtdrpglfSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVtdhstgyaikdpkRLSTIKELLFNVLRGYDDfrkaktslsppgimnreRRLHQIMFDDRDYERVEKAVGrvedkssrpqvtvlnIEKDYTVItmrskdrpkLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHvdglpisseAERERVIQCLEAAIERRASeglelelctEDRVGLLSDITRIFRENSLSIKRAEIStiggkvkdTFYVtdvtgnpvdpkiiDSIRRQightklqvkrstilapkppketttgfflgnffkartFQTFKLIRSYS
Flexible Loop (DISEMBL)
mdvfnvidcdgkkirdkEVIDYIQQRletdasfapslrSSVGVMPTEEHTSieftgtdrpGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHstgyaikdpkrlsTIKELLFNVLRGYDDfrkaktslsppgimnrerrLHQIMFDDRDYERVEKavgrvedkssrpqvtvlniekdytvitmrskdrpKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERraseglelelctedrvgllsditrifrenslsikraeistiggkvkdtfyvtdvtgnpvdpkiidsirrqightklqvkrstilapkppketttgfflgnffkartfqTFKLIRSYS
Low Complexity Region (SEG)
MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Disordered region (IsUnstruct)
**VFNVIDCDGKKIRDKEVIDYIQQRLET**********************IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRK****************LHQIMFDD*********************VTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILA*****ETTTGFFLGNFFKARTFQTFKLI****
Disordered Region (DISOPRED)
MDVFNVIDCDGKKIRDKEVIDYIQQRL*************VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT**************************FFKARTFQTFKLIRSY*
Disordered Region (DISEMBL)
MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Disordered Region (DISPRO)
MDVFNVIDCDGKKIRDKEVIDYIQQRLETD******LRSSV****TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYER***********SSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRST**********TTGFFLGNFFKARTFQTFKLIRSYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.548	0.219	0.271	2e-12
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.516	0.203	0.255	3e-10
A4XWU3	899	[Protein-PII] uridylyltra	yes	no	0.171	0.071	0.446	8e-08
B1JBR2	900	[Protein-PII] uridylyltra	yes	no	0.208	0.086	0.375	1e-07
Q886P5	898	[Protein-PII] uridylyltra	yes	no	0.171	0.071	0.415	2e-07
Q48F57	898	[Protein-PII] uridylyltra	yes	no	0.171	0.071	0.415	2e-07
Q4ZWT0	898	[Protein-PII] uridylyltra	yes	no	0.171	0.071	0.420	2e-07
Q1I624	900	[Protein-PII] uridylyltra	yes	no	0.208	0.086	0.362	3e-07
B0KS97	900	[Protein-PII] uridylyltra	yes	no	0.208	0.086	0.362	4e-07
Q5LWE5	908	[Protein-PII] uridylyltra	yes	no	0.532	0.219	0.242	4e-07

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 31/236 (13%)

Query: 36  SLRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 93
            L  +V V+P  E   + +     D PGLFS++   +A    N+++A+I T +D  A  +
Sbjct: 711 GLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDI 770

Query: 94  HVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 153
                  G+AI+  +R++ + + + +VL G     KA     PP +  R R L       
Sbjct: 771 FTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRR-QPPRLPERTRHL------- 822

Query: 154 RDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 212
                           +  P+V V N   K +TVI +  +DRP  L+ +   LTD+   +
Sbjct: 823 ----------------TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQI 866

Query: 213 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI----ERRASEGLE 264
               V+T        FY++ V G+ I   A+  ++ + LEAAI     R+  EG E
Sbjct: 867 SSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAE 922

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)

Query: 40  SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
           +V   P  E    E T    D PGLFS++   LA    ++V+A I T +D  A       
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803

Query: 98  HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE 157
              G + ++P +L  +  L+   L G  D RK     S      R R +H          
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIH---------- 853

Query: 158 RVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGM 216
                          P+V + N   D +TVI +  +DRP LL D+   L+     +    
Sbjct: 854 -------------VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900

Query: 217 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255
           + T    A   FY+R + G+ I+      R+ + L A++
Sbjct: 901 ITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LEL   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F+VTD    P+ DP++   
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCAR 876

Query: 324 IRRQI 328
           ++  I
Sbjct: 877 LQETI 881

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain W619) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LE+   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 324 IRRQIGHTKLQVKRSTILAP 343
           ++  I   +LQ  +++  +P
Sbjct: 877 LQEAIVQ-QLQAGQASDASP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain W619) (taxid: 390235)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQ 875

Query: 324 IRRQI 328
           ++  I
Sbjct: 876 LQEAI 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD   +P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQ 875

Query: 324 IRRQI 328
           ++  I
Sbjct: 876 LQDAI 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 321
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD   +P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQ 875

Query: 322 --DSIRRQI 328
             D+I +Q+
Sbjct: 876 LQDAIVKQL 884

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila (strain L48) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LE+   DR GLL+ I RIF E  +S++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 324 IRRQIGHTKLQVKRSTILAP 343
           ++  I   +LQ  +++  +P
Sbjct: 877 LQEAIIQ-QLQAGQASEASP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain GB-1) GN=glnD PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LE+   DR GLL+ + RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 324 IRRQIGHTKLQVKRSTILAP 343
           ++  I   +LQ  + +  +P
Sbjct: 877 LQEAIVQ-QLQAGQGSDTSP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 61/260 (23%)

Query: 27  LETDASFAPSLRS----------SVGVMPTEEHTSIE--FTGTDRPGLFSEVCAVLADLH 74
           +ET  +FA  LR            + + P E+  +    F   D PG+FS +   LA + 
Sbjct: 683 VETHVTFAEMLRQLEHSGDPGGIEIRLDPDEDRDATRACFAMADHPGIFSRMAGALALVG 742

Query: 75  CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK-------RLSTIKELLFNVLRGYDDF 127
            NVV+A  +T  D      +VTD    + I+D +       RL  + +++   L+G    
Sbjct: 743 ANVVDARSYTTKDG-----YVTD---AFWIQDAEGHPYEAARLPRLSQMILKTLKGEVVA 794

Query: 128 RKAKTSLSPPGIMNRERRLH---QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDY 184
           R A  S     I  RE+  +    I FD+   +                          Y
Sbjct: 795 RDALKSRDK--IKKREKAFNVPTHITFDNEGSD-------------------------IY 827

Query: 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 244
           T+I + ++DRP LL+D+   L      + + ++ T   +    FY++ + GL   SEA++
Sbjct: 828 TIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQ 887

Query: 245 ERVIQCLEAAIERRASEGLE 264
               + LE  + +  +EG E
Sbjct: 888 ----RTLETKLRKAITEGAE 903

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
224143611	439	predicted protein [Populus trichocarpa]	0.991	0.845	0.834	0.0
224055763	441	predicted protein [Populus trichocarpa]	0.991	0.841	0.830	0.0
255543679	443	amino acid binding protein, putative [Ri	1.0	0.844	0.824	1e-180
356561659	445	PREDICTED: uncharacterized protein LOC10	1.0	0.840	0.780	1e-170
225451503	440	PREDICTED: uncharacterized protein LOC10	0.991	0.843	0.784	1e-168
356571573	445	PREDICTED: uncharacterized protein LOC10	0.997	0.838	0.767	1e-165
357503685	442	Amino acid binding protein, putative [Me	1.0	0.846	0.776	1e-165
357503687	475	Amino acid binding protein, putative [Me	1.0	0.787	0.713	1e-160
449490057	440	PREDICTED: uncharacterized protein LOC10	0.994	0.845	0.722	1e-157
449441712	445	PREDICTED: uncharacterized protein LOC10	0.994	0.835	0.713	1e-155

>gi|224143611|ref|XP_002336061.1| predicted protein [Populus trichocarpa] gi|222869846|gb|EEF06977.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/375 (83%), Positives = 341/375 (90%), Gaps = 4/375 (1%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNV+D DGKKIRDKEV+DYIQ+RLE++ASFAPSLR SVGVMP+EEHT+IE TGTDRP
Sbjct: 68  MDVFNVVDQDGKKIRDKEVMDYIQRRLESNASFAPSLRGSVGVMPSEEHTAIELTGTDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLSTI+ELL NV
Sbjct: 128 GLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTIRELLCNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSRPQVTVLN 179
           L+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKSSRP VTVLN
Sbjct: 188 LKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSRPHVTVLN 247

Query: 180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS 239
           IE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYIRHVDGLP+S
Sbjct: 248 IERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIRHVDGLPVS 307

Query: 240 SEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299
           S+AERERV+QCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSL IKRAEI T G
Sbjct: 308 SDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCIKRAEILTKG 367

Query: 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFF 359
           GK KDTFYVTDVTGNPVDPKIIDSI RQIG TKL VKR++IL+PKPP+ETT G+  GN F
Sbjct: 368 GKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQETTMGYIFGNLF 427

Query: 360 KARTFQTFKLIRSYS 374
           KAR   TFKLIRSYS
Sbjct: 428 KAR---TFKLIRSYS 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055763|ref|XP_002298641.1| predicted protein [Populus trichocarpa] gi|222845899|gb|EEE83446.1| predicted protein [Populus trichocarpa]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/377 (83%), Positives = 341/377 (90%), Gaps = 6/377 (1%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQ--RLETDASFAPSLRSSVGVMPTEEHTSIEFTGTD 58
           MDVFNV+D DGKKIRDKEV+DYIQ+  RLE++ASFAPSLR SVGVMP+EEHT+IE TGTD
Sbjct: 68  MDVFNVVDQDGKKIRDKEVMDYIQRVRRLESNASFAPSLRGSVGVMPSEEHTAIELTGTD 127

Query: 59  RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118
           RPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLSTI+ELL 
Sbjct: 128 RPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTIRELLC 187

Query: 119 NVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSRPQVTV 177
           NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKSSRP VTV
Sbjct: 188 NVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSRPHVTV 247

Query: 178 LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLP 237
           LNIE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYIRHVDGLP
Sbjct: 248 LNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIRHVDGLP 307

Query: 238 ISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297
           +SS+AERERV+QCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSL IKRAEI T
Sbjct: 308 VSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCIKRAEILT 367

Query: 298 IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGN 357
            GGK KDTFYVTDVTGNPVDPKIIDSI RQIG TKL VKR++IL+PKPP+ETT G+  GN
Sbjct: 368 KGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQETTMGYIFGN 427

Query: 358 FFKARTFQTFKLIRSYS 374
            FKAR   TFKLIRSYS
Sbjct: 428 LFKAR---TFKLIRSYS 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543679|ref|XP_002512902.1| amino acid binding protein, putative [Ricinus communis] gi|223547913|gb|EEF49405.1| amino acid binding protein, putative [Ricinus communis]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/376 (82%), Positives = 337/376 (89%), Gaps = 2/376 (0%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNVID DG KIRDKEVI YIQ+RLE++ASFAPSLR SVGVMP+E+HTSIE +G DRP
Sbjct: 68  MDVFNVIDQDGNKIRDKEVIGYIQRRLESNASFAPSLRGSVGVMPSEDHTSIELSGNDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SEVCAVLADL CNVVNAEIWTHN RAAAVVHVTD STG A+KDPKRLSTIKELL NV
Sbjct: 128 GLLSEVCAVLADLRCNVVNAEIWTHNARAAAVVHVTDDSTGCAVKDPKRLSTIKELLCNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK-AVGRVEDKSSRPQVTVLN 179
           L+G +D + AK +LSPPGI +RERRLHQIMF DRDYERV++  +GR+EDKSSRP VTVLN
Sbjct: 188 LKGNNDLKAAKMTLSPPGITSRERRLHQIMFADRDYERVDRVGLGRLEDKSSRPHVTVLN 247

Query: 180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPI 238
           IEKDY+VITMRSKDRPKLLFDIVCTLTDM+YVVFHGMVN GR  EAYQEFYIRHVDGLPI
Sbjct: 248 IEKDYSVITMRSKDRPKLLFDIVCTLTDMEYVVFHGMVNAGRKEEAYQEFYIRHVDGLPI 307

Query: 239 SSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298
           SS+AERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITR FRENSL IKRAEIST 
Sbjct: 308 SSDAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRTFRENSLCIKRAEISTK 367

Query: 299 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNF 358
           GG  KDTFYVTDVTG+PVDPKI+DSI RQIG T+LQVK++  L+PKP +ETT G+ LG  
Sbjct: 368 GGIAKDTFYVTDVTGSPVDPKIVDSICRQIGQTRLQVKQNLTLSPKPAQETTMGYLLGTL 427

Query: 359 FKARTFQTFKLIRSYS 374
           FKARTFQ FKLIRSYS
Sbjct: 428 FKARTFQNFKLIRSYS 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561659|ref|XP_003549097.1| PREDICTED: uncharacterized protein LOC100818506 [Glycine max]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/378 (78%), Positives = 331/378 (87%), Gaps = 4/378 (1%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNVID +G KIRDKEVIDYIQ+RLE + SFAPSLR SVGV+PTEEHT IE TGTDRP
Sbjct: 68  MDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIELTGTDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI++LL NV
Sbjct: 128 GLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTIRDLLSNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV-GRVEDKSSRP--QVTV 177
           LRG +D + A+T+LSPPG+ NR+RRLHQIMF DRDYER+E+A  G + D+  RP   VTV
Sbjct: 188 LRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKRPLPHVTV 247

Query: 178 LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGL 236
           ++ +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T RTEA+QEFYIRHVDG 
Sbjct: 248 VDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRTEAFQEFYIRHVDGF 307

Query: 237 PISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 296
           PISSEAERER++QCLEAAIERRASEG+ELELCTEDRVGLLSDITRIFRENSL IKRAEIS
Sbjct: 308 PISSEAERERLVQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEIS 367

Query: 297 TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLG 356
           T  GK +DTFYVTDVTGNPVDPKIIDSIRRQIG   L+VK ++ L+PKP + TT GF LG
Sbjct: 368 TEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPSQPTTIGFLLG 427

Query: 357 NFFKARTFQTFKLIRSYS 374
           NFFKAR+FQ FKLIRSYS
Sbjct: 428 NFFKARSFQNFKLIRSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451503|ref|XP_002272024.1| PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera] gi|296082319|emb|CBI21324.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/376 (78%), Positives = 327/376 (86%), Gaps = 5/376 (1%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNV+D DG KIRDK VI+YI + LE DASF P +R +VGVMP+E+HTSIE +GTDRP
Sbjct: 68  MDVFNVVDGDGNKIRDKGVINYITKTLERDASFVPPMRGTVGVMPSEDHTSIELSGTDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SEVCAVLADLHCNVVNAEIWTHN RAAAVVHVTD STG AI+DP RLS IKELL NV
Sbjct: 128 GLLSEVCAVLADLHCNVVNAEIWTHNARAAAVVHVTDDSTGCAIEDPNRLSKIKELLCNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSRPQVTVLN 179
           L+G +D + AK +LSPPG  +RERRLHQIMF DRDY+RVE+A +G+  DKSSRP VTVL+
Sbjct: 188 LKGNNDLKTAKMTLSPPGFTHRERRLHQIMFADRDYQRVERAELGK--DKSSRPHVTVLD 245

Query: 180 -IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 238
            IEKDYTVITMRSKDRPKLLFD VCTLTDMQYVVFHG+V+TGR EAYQE+YIRHVDGLP+
Sbjct: 246 CIEKDYTVITMRSKDRPKLLFDTVCTLTDMQYVVFHGVVHTGRMEAYQEYYIRHVDGLPM 305

Query: 239 SSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298
           SS+AERERVI+CLEAAIERRASEGLELEL TEDR GLLSDITR+FRENSL IKRAEIST 
Sbjct: 306 SSDAERERVIECLEAAIERRASEGLELELRTEDRFGLLSDITRVFRENSLCIKRAEISTE 365

Query: 299 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNF 358
           GGK KDTFYVTDVTGNPV+P+IIDSIR+QIGH+ LQVK S  L+PK P+ETT  F  GN 
Sbjct: 366 GGKAKDTFYVTDVTGNPVNPQIIDSIRQQIGHSILQVKNSN-LSPKAPQETTMSFLFGNI 424

Query: 359 FKARTFQTFKLIRSYS 374
           FK RT Q FKLIRSYS
Sbjct: 425 FKCRTLQNFKLIRSYS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571573|ref|XP_003553951.1| PREDICTED: uncharacterized protein LOC100801859 [Glycine max]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/379 (76%), Positives = 325/379 (85%), Gaps = 6/379 (1%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNVID  G KIRDKEVIDYIQ+RLE + SF PSLR SVGV+PTEEHT IE TGTDRP
Sbjct: 68  MDVFNVIDHKGNKIRDKEVIDYIQRRLENNPSFVPSLRESVGVVPTEEHTVIELTGTDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI++LL NV
Sbjct: 128 GLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTIRDLLSNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVE----DKSSRPQVT 176
           LRG +D + A+T+LSP G+ NR+RRLHQIMF DRDYER+E+A G+ E    DK   P VT
Sbjct: 188 LRGSNDPKTARTTLSPHGVTNRDRRLHQIMFADRDYERIERA-GQEELRDRDKRPLPHVT 246

Query: 177 VLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDG 235
           V + +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T R EA+QEFYIRHVDG
Sbjct: 247 VGDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRMEAFQEFYIRHVDG 306

Query: 236 LPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 295
            PISSEAERER++QCLEAAIERRASEG+ LELCTEDRVGLLSDITR FRENSL IKRAEI
Sbjct: 307 FPISSEAERERLMQCLEAAIERRASEGMGLELCTEDRVGLLSDITRTFRENSLCIKRAEI 366

Query: 296 STIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFL 355
           ST  GK +DTFYVTDVTGNPVDPKIIDSIRRQIG   L+VK ++ L+PKPP+ TT GF L
Sbjct: 367 STEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPPQPTTIGFLL 426

Query: 356 GNFFKARTFQTFKLIRSYS 374
           GNFFKAR+FQ FKLI+SYS
Sbjct: 427 GNFFKARSFQNFKLIKSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503685|ref|XP_003622131.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497146|gb|AES78349.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/375 (77%), Positives = 320/375 (85%), Gaps = 1/375 (0%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNV D +G KI+DKEVIDYIQ+RLE + SF  S+R SVGV+PTEEHT IE TGTDRP
Sbjct: 68  MDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRP 127

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SE+CAVLADL CNVV AEIWTHN RAAAVVHVTD S+G AI+DP RLSTI++LL NV
Sbjct: 128 GLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNV 187

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNI 180
           LRG DD + AKT+LS PG+  R+RRLHQIMF DRDYERVE+A  R  DK   P VTV + 
Sbjct: 188 LRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFPHVTVSDC 247

Query: 181 -EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS 239
            E+DYTV+ MR+KDRPKLLFDIVCTLTDMQYVVFHG+V T RT AYQEFYIRHVDG PIS
Sbjct: 248 TERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPIS 307

Query: 240 SEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299
           SEAERER+IQCLEAAIERRASEG+ELELCTEDRVGLLSDITRIFRENSL IKRAEIST  
Sbjct: 308 SEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTEN 367

Query: 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFF 359
           GK KDTFYVTDVTGNPVDPK IDSIRRQIG T LQVK ++ L+PKPP+ TT GF  G+FF
Sbjct: 368 GKAKDTFYVTDVTGNPVDPKSIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFF 427

Query: 360 KARTFQTFKLIRSYS 374
           KAR+FQ FKLIRSYS
Sbjct: 428 KARSFQNFKLIRSYS 442

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503687|ref|XP_003622132.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497147|gb|AES78350.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/408 (71%), Positives = 320/408 (78%), Gaps = 34/408 (8%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQ---------------------------------RL 27
           MDVFNV D +G KI+DKEVIDYIQ+                                 RL
Sbjct: 68  MDVFNVTDRNGNKIKDKEVIDYIQRVGSCLFAISRMLQLTLIYVARSLWKGDFTVLYHRL 127

Query: 28  ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 87
           E + SF  S+R SVGV+PTEEHT IE TGTDRPGL SE+CAVLADL CNVV AEIWTHN 
Sbjct: 128 EKNPSFETSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNT 187

Query: 88  RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLH 147
           RAAAVVHVTD S+G AI+DP RLSTI++LL NVLRG DD + AKT+LS PG+  R+RRLH
Sbjct: 188 RAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLH 247

Query: 148 QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLT 206
           QIMF DRDYERVE+A  R  DK   P VTV +  E+DYTV+ MR+KDRPKLLFDIVCTLT
Sbjct: 248 QIMFADRDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLT 307

Query: 207 DMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELE 266
           DMQYVVFHG+V T RT AYQEFYIRHVDG PISSEAERER+IQCLEAAIERRASEG+ELE
Sbjct: 308 DMQYVVFHGVVQTERTGAYQEFYIRHVDGFPISSEAERERLIQCLEAAIERRASEGMELE 367

Query: 267 LCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRR 326
           LCTEDRVGLLSDITRIFRENSL IKRAEIST  GK KDTFYVTDVTGNPVDPK IDSIRR
Sbjct: 368 LCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKSIDSIRR 427

Query: 327 QIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS 374
           QIG T LQVK ++ L+PKPP+ TT GF  G+FFKAR+FQ FKLIRSYS
Sbjct: 428 QIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIRSYS 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490057|ref|XP_004158495.1| PREDICTED: uncharacterized protein LOC101225681 [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/375 (72%), Positives = 313/375 (83%), Gaps = 3/375 (0%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE +GTDRP
Sbjct: 68  MDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIELSGTDRP 125

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TIKELL NV
Sbjct: 126 GLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTIKELLCNV 185

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNI 180
           LRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP VTV + 
Sbjct: 186 LRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRPHVTVFDC 245

Query: 181 -EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS 239
            EKDYT+IT R++DRPKLLFD++CTLTDM+YVVFHGMV TGR EA+ EFYIRH DGLPIS
Sbjct: 246 TEKDYTLITTRTRDRPKLLFDVLCTLTDMEYVVFHGMVETGRMEAFLEFYIRHKDGLPIS 305

Query: 240 SEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299
           S+AER+RV+ CLEAAIERR SEGL+LELC EDRVGLLSDITRIFRENSL I+RAEI+T  
Sbjct: 306 SKAERDRVLHCLEAAIERRESEGLKLELCAEDRVGLLSDITRIFRENSLCIRRAEIATKR 365

Query: 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFF 359
           GK KD FYVTD+TG  +D K+++SIR+QIG   LQVK ++ L+  PPKE T GFFLG FF
Sbjct: 366 GKAKDIFYVTDMTGTTIDAKVVESIRKQIGDAMLQVKHNSCLSETPPKEMTAGFFLGYFF 425

Query: 360 KARTFQTFKLIRSYS 374
           KARTFQ FKLIRSYS
Sbjct: 426 KARTFQNFKLIRSYS 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441712|ref|XP_004138626.1| PREDICTED: uncharacterized protein LOC101213097 [Cucumis sativus]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/380 (71%), Positives = 314/380 (82%), Gaps = 8/380 (2%)

Query: 1   MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
           MDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE +GTDRP
Sbjct: 68  MDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIELSGTDRP 125

Query: 61  GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
           GL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TIKELL NV
Sbjct: 126 GLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTIKELLCNV 185

Query: 121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNI 180
           LRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP VTV + 
Sbjct: 186 LRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRPHVTVFDC 245

Query: 181 -EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-----AYQEFYIRHVD 234
            EKDYT+IT R++DRPKLLFD++CTLTDM+YVVFHGMV TGR E     ++QEFYIRH D
Sbjct: 246 TEKDYTLITTRTRDRPKLLFDVLCTLTDMEYVVFHGMVETGRMEENWSFSFQEFYIRHKD 305

Query: 235 GLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAE 294
           GLPISS+AER+RV+ CLEAAIERR SEGL+LELC EDRVGLLSDITRIFRENSL I+RAE
Sbjct: 306 GLPISSKAERDRVLHCLEAAIERRESEGLKLELCAEDRVGLLSDITRIFRENSLCIRRAE 365

Query: 295 ISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFF 354
           I+T  GK KD FYVTD+TG  +D K+++SIR+QIG   LQVK ++ L+  PPKE T GFF
Sbjct: 366 IATKRGKAKDIFYVTDMTGTTIDAKVVESIRKQIGDAMLQVKHNSCLSETPPKEMTAGFF 425

Query: 355 LGNFFKARTFQTFKLIRSYS 374
           LG FFKARTFQ FKLIRSYS
Sbjct: 426 LGYFFKARTFQNFKLIRSYS 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.954	0.824	0.716	1e-130
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.994	0.817	0.589	9.7e-112
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.989	0.811	0.559	1.6e-102
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.949	0.783	0.482	1.3e-84
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.866	0.734	0.502	2.2e-80
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.521	0.39	0.454	1.4e-76
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.858	0.714	0.492	3.9e-76
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.791	0.620	0.391	9.9e-55
TIGR_CMR|GSU_1820	902	GSU_1820 "protein-P-II uridyly	0.208	0.086	0.294	2e-05
TIGR_CMR|SPO_0397	908	SPO_0397 "protein-P-II uridyly	0.131	0.053	0.428	9.1e-05

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 265/370 (71%), Positives = 300/370 (81%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIEFTGTDR 59
             MDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+TSIE  GTDR
Sbjct:    69 MDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIELAGTDR 128

Query:    60 PGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119
             PGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ST  AI DP RLSTIKELL N
Sbjct:   129 PGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTIKELLCN 188

Query:   120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN 179
             V+R     R AKT  S     +RERRLHQIMFDDRDYE V++A       +SRP VT++N
Sbjct:   189 VVRTNSGSRAAKTVFSCSDT-HRERRLHQIMFDDRDYEGVKRA----RTSASRPSVTLMN 243

Query:   180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS 239
             IEKDYTV+TMRSKDRPKL+FD+VCTLTDMQYVVFHGMV+T   EAYQEFYIRHVDGLPI+
Sbjct:   244 IEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDGLPIN 303

Query:   240 SEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299
             SEAE+ERVIQCLEAAIERRASEGLELEL  EDRVGLLSDITR FRENSL+I RAEIST  
Sbjct:   304 SEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEISTRE 363

Query:   300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR------STILAPKPPKETTT-G 352
             GK KDTFYVTDVTGNPV+ KI++SIR+QIG +KL+VK+      S +   +P  ETTT G
Sbjct:   364 GKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKKKEKEHCSVLGTSRPSHETTTMG 423

Query:   353 FFLGNFFKAR 362
             + L N FK +
Sbjct:   424 YLLSNIFKPK 433

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 224/380 (58%), Positives = 285/380 (75%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
             MDVFNV D DG K+ D+ V+DYIQ+ L  +A F+ S+RS VGV+P+ + T IE TG DRP
Sbjct:    78 MDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-VGVIPSTDSTVIELTGCDRP 136

Query:    61 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
             GL SE+ AVL  L C+V+NAEIWTHN RAAAV+ VTD  TG  I DP+RLS IK LL NV
Sbjct:   137 GLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNV 196

Query:   121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE-RVEKAVGRVEDKSSRPQVTVLN 179
             L+G +  R+AKT +S  G ++ +RRLHQ+MF+DRDYE R+      ++D+  RP V V N
Sbjct:   197 LKGSNTPREAKTVVSH-GEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVCVDN 255

Query:   180 -IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 238
              ++KDY+V+T+R KDRPKLLFD VCTLTDMQYVVFHG V+T  TEA+QE+Y+RH+DG P+
Sbjct:   256 WLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVRHIDGSPV 315

Query:   239 SSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298
              SEAE++RVIQCLEAAI+RR SEGL+LELCT DRVGLLS++TRIFRENSL++ RAE+ T 
Sbjct:   316 KSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVKTK 375

Query:   299 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPK----PPKETTTGFF 354
             GGK  +TFYV+D +G  +D K IDSIR+ IG T L+VK +     +    P  E+ T F 
Sbjct:   376 GGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSHESPTRFL 435

Query:   355 LGNFFKARTFQTFKLIRSYS 374
              G  FK+++F  F L+RSYS
Sbjct:   436 FGGLFKSKSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 213/381 (55%), Positives = 271/381 (71%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--FAPSLRSSVGVMPTEEHTSIEFTGTD 58
             MDVFNV D DG K+ D+ V++YI++ L  D S  F+PS+RS++GV  + ++T +E TGTD
Sbjct:    78 MDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTD 137

Query:    59 RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118
             RPGL SE+CAVL DL CNVVNAEIWTH  +AAAV+ VTD  T  AI DP+RLS I++LL 
Sbjct:   138 RPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKIRKLLG 197

Query:   119 NVLRGYDD---FRKAKTSLSPP-GIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSR-- 172
              VL G      FR+ KT++S      + +R+LHQ+MF DRDY+  E  V   EDK  R  
Sbjct:   198 YVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDD-EDKCGRVI 256

Query:   173 PQVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 231
             P V V N+ + DY+++ ++ KDRPKLLFD V TLTDM YVV H  ++    +AYQE+YIR
Sbjct:   257 PDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQEYYIR 316

Query:   232 HVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIK 291
             H DG P+ SEAER+RVI+CL+AAI+RR SEGL+LELCT DRVGLLSD+TRIFRENSL++ 
Sbjct:   317 HTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFRENSLTVT 376

Query:   292 RAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTT 351
             RAE+ T G K  +TFYV D +G  VD K I+SIR+ IG T LQVK     A   P+++ T
Sbjct:   377 RAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQVKGGNTDAKPSPQDSPT 436

Query:   352 GFFLGNFFKARTFQTFKLIRS 372
             GF  G  FK+R+F  F LIRS
Sbjct:   437 GFLFG-VFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 183/379 (48%), Positives = 253/379 (66%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS----SVGVMPTEEHTSIEFTG 56
             MDVF+V D  G K+ D + IDYI++ L      + S  +     VGV    +HTSIE   
Sbjct:    76 MDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHTSIEIIA 135

Query:    57 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKEL 116
              DRPGL SEV AVLADL+ NVV AE WTHN R A V++V D++T  A+ DP+RLS+++E 
Sbjct:   136 RDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERLSSMEEQ 195

Query:   117 LFNVLRGYD--DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSS--- 171
             L NVLRG +  D + A+TSLS  G  + +RRLHQ+ F DRDYE    AV +++D +S   
Sbjct:   196 LNNVLRGCEEQDEKFARTSLSI-GSTHVDRRLHQMFFADRDYE----AVTKLDDSASCGF 250

Query:   172 RPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 230
              P++TV + E K Y+VI +  +DRPKL+FDIVCTLTDMQY+VFH  +++  + A QE++I
Sbjct:   251 EPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEYFI 310

Query:   231 RHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSI 290
             RH DG  + +E E+ERV++CLEAAI RR SEG  LELC +DRVGLLS++TRI RE+ LS+
Sbjct:   311 RHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILREHGLSV 370

Query:   291 KRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKE-- 348
              RA ++T+G +  + FYV D +GNPVD K I+++R +IGH+ +   ++ + + K  +E  
Sbjct:   371 SRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMMIDFKNKVPSRKWKEEGQ 430

Query:   349 -------TTTGFFLGNFFK 360
                      T FF GN  +
Sbjct:   431 AGTGGGWAKTSFFFGNLLE 449

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 170/338 (50%), Positives = 233/338 (68%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
             MDVF+V D +G K+ D+ V+ YI+Q +ET   +  ++  + G+      T++E TGTDR 
Sbjct:    73 MDVFHVTDLNGNKLNDQSVLRYIEQSIET-VYYGENIEVN-GL------TALELTGTDRI 124

Query:    61 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120
             GL SE+ AVL+DL+C+VV+A++WTHN R A+V+++ D  +G  I D  R+S I+  L NV
Sbjct:   125 GLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNV 184

Query:   121 LRGYDDFRKA-KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN 179
             L G +D   A KT ++   +M+ ERRLHQ+MF+DRDYER  K      ++S    VTV N
Sbjct:   185 LNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKK----HERSPMVVVTVQN 240

Query:   180 -IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 238
               E+ Y+V+ +  +DR KLLFD+VCTLTDM+Y VFH  +NT   +A+ EFYIRH DG PI
Sbjct:   241 WAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDGSPI 300

Query:   239 SSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298
             SSEAER+RVIQCLEAA+ERRA EG+ LEL   D+ GLL+++TR FREN L++ R EIST 
Sbjct:   301 SSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEISTS 360

Query:   299 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK 336
                  + FYVTD  G+  D K+I+S+R +IG   L+VK
Sbjct:   361 SDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVK 398

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
 Identities = 95/209 (45%), Positives = 148/209 (70%)

Query:   141 NRERRLHQIMFDDRDYER-------VEKAVGRVE--DKSSRPQVTVLNI----EKDYTVI 187
             N ERRLHQ+M   RD++        +     ++E  D   R + T+++I    E+ Y+++
Sbjct:   241 NMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKER-KTTIVSIGNCEERGYSIV 299

Query:   188 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERV 247
             T++SKDR +L+FD +CTL DMQYV+FH  + +   +A+QE++IRH+DG  +++E E+ERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   248 IQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFY 307
             I+CLEAAIERR  EG++LELC E+RVGLLSDITR+ REN L++ RA++ T G K  + FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   308 VTDVTGNPVDPKIIDSIRRQIGHTKLQVK 336
             V D++GN +D + ++S+++++    L+VK
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVK 448

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 167/339 (49%), Positives = 226/339 (66%)

Query:     1 MDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRP 60
             MDVF+V D +G K+ D+ +I YI++ +ET  S         G+      T++E TGTDR 
Sbjct:    73 MDVFHVSDLNGDKLTDENLIRYIEKSIET--SHYCKTEGYTGL------TALELTGTDRV 124

Query:    61 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK-DPKRLSTIKELLFN 119
             GL SEV AVLADL C+VV A+ WTHN R A++++V D ++G  I  D  R+  ++  L N
Sbjct:   125 GLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVEGQLRN 184

Query:   120 VLRGYDDFRK-AKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVL 178
             +L+  D ++   +T +S  G  + ERRLHQ MF DRDYE+      + + + S P V+V 
Sbjct:   185 LLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEK------KFDIEKS-PIVSVQ 237

Query:   179 NIEK-DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLP 237
             N+ K  Y+V+ ++ KDR KLLFD+VCTLTDM Y+VFH  + T    A+ EFY+RH DG P
Sbjct:   238 NLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHSDGHP 297

Query:   238 ISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297
             +SSE ER+R+IQCL+AAIERR  +G+ LELCT DR GLL+++TRI REN L+I RAEIST
Sbjct:   298 VSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEIST 357

Query:   298 IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK 336
                  ++ FYVTD  GN +DP+II SIR +IG   L VK
Sbjct:   358 KDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 122/312 (39%), Positives = 186/312 (59%)

Query:    48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDP 107
             EHT+ E TG +RPGL SE+ AVL+D+ C+V  A  WTH++RAA V+++ D   G  I DP
Sbjct:   131 EHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPIIDP 190

Query:   108 KRLSTIKELLFNVLRGYD---DF-----RKAKTSLSPPGIMNRERRLHQIMFDDRDYERV 159
              R + +K+ L  V+  +    D      R  +    P G  + ERRLH++M+ + DYE  
Sbjct:   191 IRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYENC 250

Query:   160 -------EKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 212
                    ++       +  R  VT+      Y+++ ++ +DRPKLLFD VC L ++Q+VV
Sbjct:   251 FDCDCFGDRCDALWRGRCERIHVTI-EACNGYSMVNVKCRDRPKLLFDTVCALKELQFVV 309

Query:   213 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDR 272
             FH +     + A QE++IR  +G  + +E +RER+  CL AAI RRAS+GL+LE+ TE++
Sbjct:   310 FHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQGLKLEIRTENK 369

Query:   273 VGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332
             +GLLSD+TR+ REN LSI RAE+ T G     +FYVTDV G    P  ++++ R++G   
Sbjct:   370 MGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVEAVVRELGGAV 429

Query:   333 LQVKRSTILAPK 344
             +   +   + P+
Sbjct:   430 VSAVKGVGMMPR 441

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TIGR_CMR|GSU_1820 GSU_1820 "protein-P-II uridylyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 102 (41.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query:   180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS 239
             +  DYTVI + + D+  LL+ I  TLTD+   +    ++T   +    FY++ + G  I+
Sbjct:   823 VSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHKIT 882

Query:   240 SEAERERVIQCLEAAIER 257
             S    E + + L  A+E+
Sbjct:   883 SVERLEEIREKLRVAVEQ 900

GO:0006542 "glutamine biosynthetic process" evidence=ISS

GO:0008773 "[protein-PII

TIGR_CMR|SPO_0397 SPO_0397 "protein-P-II uridylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 94 (38.1 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query:   265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 313
             +E+ T DR GLL D+ R     ++ I  A I+T G +V D+FYV D+ G
Sbjct:   830 IEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFG 878

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3173.1 hypothetical protein (434 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	2e-37
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-35
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	5e-35
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	6e-25
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-16
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	8e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-13
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-11
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	9e-10
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	9e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	6e-09
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-08
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-08
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	1e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	1e-06
pfam01842	66	pfam01842, ACT, ACT domain	2e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	4e-06
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	4e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	6e-06
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	6e-06
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	3e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	6e-05
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	7e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	1e-04
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
pfam13740	76	pfam13740, ACT_6, ACT domain	3e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	4e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	7e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	7e-04
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.003
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.003
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  129 bits (326), Expect = 2e-37
 Identities = 49/75 (65%), Positives = 64/75 (85%)

Query: 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAE 243
           Y+V+T++ +DRPKLLFD+VCTLTDM YVVFH  ++T   +A+QE+YIRH DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 244 RERVIQCLEAAIERR 258
           R+RVI+CLEAAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  124 bits (313), Expect = 1e-35
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKII 321
           G+ LEL TEDRVGLLSD+TR+FREN L++ RAEIST G    + FYVTD  GNPVDPK I
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 322 DSIRRQIGHTKL 333
           +++R++IG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  122 bits (309), Expect = 5e-35
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 50  TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
           T+IE TGTDRPGL SEV AVLADLHCNVV A  WTHN R A V++V D  TG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 110 LSTIKELLFNVLRG 123
           L++I++ L NVLRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 96.0 bits (240), Expect = 6e-25
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 324
           LEL   DR GLL+D+TR+  E  L+I  A+I+T+G + +D FYVTD  G P+DP+  +++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 325 RRQIGHT 331
           R  +G  
Sbjct: 63  RAALGEA 69

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.0 bits (201), Expect = 2e-19
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 50  TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
           T +E T  DRPGL ++V  VLA+L  N+ +A+I T  +RA  V +VTD + G  + DP+R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 110 LSTIKELLFNVL 121
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 79.5 bits (197), Expect = 7e-19
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIID 322
             +E+   DR GLL+DITR+  +  L+I  A IST G +  D FYVTD  G P+DP+ I 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 323 SIRRQIGH 330
            +   +  
Sbjct: 61  RLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 50  TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
           T +E    DRPGL +++  VLADL  N+ +A I T  +RA  V +VTD S G  + DP+R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 110 LSTIKELLFNVL 121
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 72.6 bits (179), Expect = 8e-14
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 29/237 (12%)

Query: 28  ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 87
           + D +  P L + V   P    T +     D PGLFS +    A    N+V+A I+T  D
Sbjct: 712 DADDAGRP-LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD 770

Query: 88  -RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRL 146
            RA     + D + G    +P+RL+ + + + + L G                   E RL
Sbjct: 771 GRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALSG-------------------EVRL 810

Query: 147 HQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTL 205
            + +   R   +       V      P+VT+ N     +TVI +  +DRP LL+D+   L
Sbjct: 811 PEAL-AKRTKPKKRARAFHVP-----PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL 864

Query: 206 TDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEG 262
           +D+   +    + T    A   FY+  + GL I++EA +  + + L AA+    +E 
Sbjct: 865 SDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 244
           TV+ + + DRP LL DI   L D+   +    ++T    A   FY+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 245 ERVIQCLEAAI 255
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 44/192 (22%)

Query: 166 VEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLT-------DMQYVV-FHGM 216
           V     +P V +        T + + + DRP+L   +   L+       D Q      G 
Sbjct: 665 VRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGY 724

Query: 217 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRAS---------------- 260
                  A   F +   DG P+  +       + +EA +  +A                 
Sbjct: 725 -------ALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPI 777

Query: 261 ------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 308
                       +   LE+   DR GLL+ +  +F +  LS+  A+I+T G +V+D F V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 309 TDVTGNPVDPKI 320
           TD  G  ++ ++
Sbjct: 838 TDADGQALNAEL 849

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 34/183 (18%)

Query: 168 DKSSRPQVTVLNIEKDYTV-ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AY 225
             S  P   +          + + + D+P L   +   L  +   V    VNT +   A 
Sbjct: 651 LSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAL 710

Query: 226 QEFYIRHVDGLPISSEAERERVIQCLEAAIERRA-------------------------- 259
             F ++ + G P ++E   + ++Q L   +   A                          
Sbjct: 711 DTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVT 770

Query: 260 ------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 313
                  +   +E+   DR GLL+ + R   E  LSI+ A+I+T G K +D FYVTD+ G
Sbjct: 771 ILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830

Query: 314 NPV 316
             +
Sbjct: 831 LKL 833

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.8 bits (151), Expect = 3e-10
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 48/189 (25%)

Query: 181 EKDYTVITMRSKDRPKLLFDI--VCTLT-----DMQ-YVVFHGMVNTGRTEAYQEFYIRH 232
            +  T +T+ + D P L   I   C        D + +    G        A   F+I+ 
Sbjct: 729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-------ALDTFWIQD 781

Query: 233 VDGLPISSEAERERVIQCLEAAI--ERRASEGLE-------------------------- 264
             G          R+ + +E A+  E R  E L                           
Sbjct: 782 AFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASN 841

Query: 265 ----LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPK 319
               +E+   DR GLL D+TR   + +L+I  A I+T G +  D FYVTD+ G  + +  
Sbjct: 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEA 901

Query: 320 IIDSIRRQI 328
              +IRR +
Sbjct: 902 RQAAIRRAL 910

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 47  EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
              T IE  G DRPGL  ++   L+DL+ N+ +A I T+ +RA  V +VTD   G  I +
Sbjct: 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITN 899

Query: 107 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGI 139
             R + I+  L   L   +   +A+ +  P  +
Sbjct: 900 EARQAAIRRALLAALAEGEA--EARAARPPGAV 930

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
           LE+   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 324 IRRQI 328
           ++  I
Sbjct: 877 LQDAI 881

Length = 895

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 58  DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 117
           D+PGLF++V   LA L  +V +A++ T  D  A    V     G      +    + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 118 FNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTV 177
            +VL G      AK   +      R RRL                          P+VT+
Sbjct: 737 VDVLAG-----LAKDPDTISARRARRRRLQHFAV--------------------PPRVTI 771

Query: 178 LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGL 236
           LN   +  T++ +R+ DRP LL  +  TL ++   +    + T   +A   FY+  + GL
Sbjct: 772 LNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831

Query: 237 PISSEAERERVIQCLEAAIE 256
            ++ E E +R+++ L A++ 
Sbjct: 832 KLTDE-EEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 1   MDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPSLRS-------------SVGVM 44
           +D F V++ DG  +   R   +   + + L       P  R               V ++
Sbjct: 726 LDTFIVLEPDGFPVEEDRRAALRGELIEAL-LSGKAQPPRRRRIPRKLRHFPIPPRVTIL 784

Query: 45  PTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGY 102
           PT   + T +E    DRPGL + +  V ADL  ++ +A+I T  +R   V  VTD + G 
Sbjct: 785 PTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQ 843

Query: 103 AIKDPKRLSTIKELL 117
           A+    R S ++ LL
Sbjct: 844 ALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 173 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 232
             V +   +     +T+ + DR  LL      L   +  V    V +    A  EF +  
Sbjct: 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647

Query: 233 VDGLPISSEAERERVIQCLE------AAIERRASEGLE---------------------- 264
             G P  +   R+ + + L+      A +  R +                          
Sbjct: 648 RFGSPPDAALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDA 707

Query: 265 --LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
             LE+   DR GLL+ + R      + ++ A ++T+G  V D FYVT   G P+
Sbjct: 708 TVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 58  DRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKEL 116
           DRPGLF+ +   L  L  N+++A I+T  D  A     V D   G  I + +RL+ I+E 
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 117 LFNVL 121
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310
           E+EL   DR GLL+ ++++F E +L++  A+I+TIG K +D F +T+
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN 831

Length = 854

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 33/216 (15%)

Query: 43  VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTG 101
           V P    T +     DRP LF+ VCA L+    ++V+A+I+T  +  A     V +   G
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDG 736

Query: 102 YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK 161
           + +++ +R +   EL+  +L G       K        + R+ R   I            
Sbjct: 737 FPVEEDRRAALRGELIEALLSG-------KAQPPRRRRIPRKLRHFPI------------ 777

Query: 162 AVGRVEDKSSRPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 220
                      P+VT+L     D TV+ +R+ DRP LL  +     D+   +    + T 
Sbjct: 778 ----------PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 221 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256
                  F +   DG  +++E  R+ ++Q L  A+ 
Sbjct: 828 GERVEDVFIVTDADGQALNAE-LRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA--VVHVTDHS 99
          T +E    DRPGL +EV   LAD   N+ +    T  D+A    +V V D  
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEE 52

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDS 323
            LE+   DR GLL+++     +  ++I+    ST G K    F +  V         +++
Sbjct: 2   VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVF-IVVVVDEEDLEAALEA 60

Query: 324 IRRQIG 329
           +++ +G
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 40  SVGVMPT--EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
            V ++ T   + T +E    DRPGL + V   L +L  ++ +A+I T  ++A  V +VTD
Sbjct: 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 33/167 (19%)

Query: 185 TVITMRSKDRPKLLFDIVCTLTDMQYV-VFHGMVNTGRTE-AYQEFYIRHVDGLPISSEA 242
           T I + S DRP L F  VC   D + + V    + T R   A   F +   DG P+S + 
Sbjct: 702 TEIFIWSPDRPYL-FAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QD 759

Query: 243 ERERVIQCLEAAIE---------RRASEGLE--------------------LELCTEDRV 273
             + + + LE A+          RR    L                     +EL   D+ 
Sbjct: 760 RHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP 819

Query: 274 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKI 320
           GLL+ + +IF +  +S+  A I+TIG +V+D F +       ++ ++
Sbjct: 820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEEL 866

Length = 884

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEI-STIGGKVKDTFYVTDVTGNPV-DPK 319
           G E+ + T DR GL + I     +  L+I  A I +T  G   DTF V D  G P+ + +
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERE 60

Query: 320 IIDSIRRQI 328
            +  IR  +
Sbjct: 61  RLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
          +  +G DRPGL ++V +VLA+   N+ + E  T  D   A + + 
Sbjct: 1  LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTD 310
           L+L   DR GLL D+T +  E  L+I+R ++ST   G+V D F++TD
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310
           L +   DR GLL  I R+  E+ +S+  A+I+T+G +V+DTF +  
Sbjct: 789 LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG 834

Length = 856

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 324
           L +   DR GLL+ +  +  E  ++I   E  T G   +   ++  V G+    K+++++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFI-VVDGDGDLEKLLEAL 59

Query: 325 R 325
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 274 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDSIRRQIG 329
           G+L +  ++  +  L I +A IS+ GG   D F+VTD  GN + D  +I  I + +G
Sbjct: 13  GILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 222 TEAYQEFYIRHVDGLPISSEAE----RERVIQCLEAAIERRASEGLELELCTEDRVGLLS 277
             AY ++++R      I+  AE           L      R S G E+ +   D+ GL +
Sbjct: 625 LRAYDDYFLRFTHK-EIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFA 683

Query: 278 DITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVD 317
            +       SLS+  A+++T   G   DTF V D+ G+P  
Sbjct: 684 KVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPA 724

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 1  MDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 31
          MDVF+V D  G K+ D  +I YI++ L T  
Sbjct: 42 MDVFHVTDQLGNKLTDDSLIAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 256 ERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI-STIGGKVKDTFYVTDVTGN 314
            R  S G E+ +   DR  L + +        LSI  A+I +T  G   DTF V +  G 
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF 737

Query: 315 PVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPK 347
           PV+     ++R ++    L  K       + P+
Sbjct: 738 PVEEDRRAALRGELIEALLSGKAQPPRRRRIPR 770

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 37/200 (18%)

Query: 58  DRPGLFSEVCAVLADLH-CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKEL 116
           DR GL S+   VLA LH   V +A + +H+  A     V+    G    D   L      
Sbjct: 608 DRRGLLSKAAGVLA-LHRLRVRSASVRSHDGVAVLEFVVSPRF-GSPP-DAALLR----- 659

Query: 117 LFNVLRGYDDFRKAKT-SLSPPGIMNR-ERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQ 174
                    D R+A    L    ++ R   R       +     V      V   ++ P+
Sbjct: 660 --------QDLRRALDGDLD---VLARLAAR-------EAAAAAV-----PVRRPAAPPR 696

Query: 175 VTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 233
           V  L+    D TV+ +R+ DRP LL  +   L      V    V T   +    FY+   
Sbjct: 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA 756

Query: 234 DGLPISSEAERERVIQCLEA 253
            G P++    R  V Q + A
Sbjct: 757 AGGPLA--DARAAVEQAVLA 774

Length = 774

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
          I  TG DRPGL + +  VLA+  CN++++            + V+
Sbjct: 5  ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
           + L   DR GLL+D+  + R   L +  A I+T G + +D F +TD    P+
Sbjct: 799 ISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPL 850

Length = 869

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 51  SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 110
            +E    DR GL S+V  V  +    V  AEI T  D A  V +VTD + G  + DPK +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 111 STIKE 115
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 41/204 (20%)

Query: 48  EHTSIEFTG--------TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHS 99
           E T  EF G         D+   F+   A +  L+ N+ +A I T + +     ++    
Sbjct: 695 ETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754

Query: 100 TGYAIKD-PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDY 156
            G  I D P R+  I+E L   LR  DD+         P I+ R   R+L    F     
Sbjct: 755 DGEPIGDNPARIEQIREGLTEALRNPDDY---------PTIIQRRVPRQLKHFAFP---- 801

Query: 157 ERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 215
                            QVT+ N  ++  TV+ + + DRP LL  I     +    + + 
Sbjct: 802 ----------------TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845

Query: 216 MVNTGRTEAYQEFYIRHVDGLPIS 239
            + T        F+I   D  P+S
Sbjct: 846 KIATLGERVEDVFFITDADNQPLS 869

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 1   MDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR------------SSVGVMP 45
           MD F V++ DG  +   R + +   ++Q L   +   P  R            + V  +P
Sbjct: 743 MDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLP 802

Query: 46  TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 89
           T     + +E    D+PGL + V  + ADL  ++  A I T  +R 
Sbjct: 803 THTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERV 848

Length = 884

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 33  FAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAV 92
           FAP  R           T I     DRPGL ++V  VL   H  V +A I T  +RA   
Sbjct: 782 FAP--RVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQ 839

Query: 93  VHVTD 97
             +TD
Sbjct: 840 FQITD 844

Length = 869

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 17/85 (20%), Positives = 32/85 (37%)

Query: 237 PISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 296
           P+            +   I       +E+ +   DR GLLS    +   + L ++ A + 
Sbjct: 574 PLDPAQLALAADGGVHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVR 633

Query: 297 TIGGKVKDTFYVTDVTGNPVDPKII 321
           +  G     F V+   G+P D  ++
Sbjct: 634 SHDGVAVLEFVVSPRFGSPPDAALL 658

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.93
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.9
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.82
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.8
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.75
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.7
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.69
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.65
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.63
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.59
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.57
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.56
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.55
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.49
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.41
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.36
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.36
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.33
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.32
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.31
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.28
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.24
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.23
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.95
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.95
COG4747	142	ACT domain-containing protein [General function pr	98.79
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.74
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.72
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.5
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.48
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.47
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.41
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.4
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.37
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.26
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.16
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.15
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.14
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.1
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.09
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.09
PRK00194	90	hypothetical protein; Validated	98.07
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.07
PRK00194	90	hypothetical protein; Validated	98.06
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.82
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.79
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.75
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.74
COG4747	142	ACT domain-containing protein [General function pr	97.69
COG3830	90	ACT domain-containing protein [Signal transduction	97.68
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.61
COG3830	90	ACT domain-containing protein [Signal transduction	97.57
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.56
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.54
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.54
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.51
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.49
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.33
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.32
PRK07431	587	aspartate kinase; Provisional	97.28
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.27
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.23
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.2
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.2
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.15
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.14
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.07
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.05
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.04
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.03
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.02
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.01
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.01
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.97
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.94
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.93
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.93
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.91
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.89
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.87
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.8
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.77
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.74
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.72
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.68
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.68
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.66
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.64
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.64
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.64
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.62
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.57
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.56
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.45
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.44
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.43
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.42
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.41
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.38
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.34
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.32
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.31
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.29
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.28
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.24
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.15
PRK08577	136	hypothetical protein; Provisional	96.11
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.11
cd02116	60	ACT ACT domains are commonly involved in specifica	96.08
PRK07431	587	aspartate kinase; Provisional	96.06
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.96
PRK08577	136	hypothetical protein; Provisional	95.95
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.92
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.88
PRK06635	404	aspartate kinase; Reviewed	95.8
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.74
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.71
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.7
PRK04435	147	hypothetical protein; Provisional	95.67
PRK04435	147	hypothetical protein; Provisional	95.61
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.59
cd02116	60	ACT ACT domains are commonly involved in specifica	95.41
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.35
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.33
PRK07334	403	threonine dehydratase; Provisional	95.28
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.09
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.97
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.74
PRK11899	279	prephenate dehydratase; Provisional	94.72
PRK07334	403	threonine dehydratase; Provisional	94.43
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.38
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.28
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.09
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.97
PRK08210	403	aspartate kinase I; Reviewed	93.97
PRK06635	404	aspartate kinase; Reviewed	93.8
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.79
PRK06291	465	aspartate kinase; Provisional	93.5
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.34
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.15
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.11
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	92.76
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	92.51
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.42
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	92.19
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.14
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.13
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.92
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	91.8
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	91.79
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.76
PRK09034	454	aspartate kinase; Reviewed	91.66
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	91.62
COG1707	218	ACT domain-containing protein [General function pr	91.55
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.47
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.39
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	91.28
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.03
COG1707	218	ACT domain-containing protein [General function pr	90.86
PRK08818	370	prephenate dehydrogenase; Provisional	90.85
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.8
PRK06291	465	aspartate kinase; Provisional	90.76
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	90.71
PRK06382	406	threonine dehydratase; Provisional	90.64
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	90.33
PRK06545	359	prephenate dehydrogenase; Validated	89.99
PRK12483	521	threonine dehydratase; Reviewed	89.94
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	89.87
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	89.72
PRK09181	475	aspartate kinase; Validated	89.71
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.26
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.84
PLN02317	382	arogenate dehydratase	88.82
PRK09034	454	aspartate kinase; Reviewed	88.76
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.66
PLN02551	521	aspartokinase	88.61
PRK06382	406	threonine dehydratase; Provisional	88.53
PRK14646	155	hypothetical protein; Provisional	88.39
PRK06349	426	homoserine dehydrogenase; Provisional	88.39
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	88.26
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.91
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	87.85
PRK08210	403	aspartate kinase I; Reviewed	87.59
PRK14636	176	hypothetical protein; Provisional	87.43
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	87.3
PRK14634	155	hypothetical protein; Provisional	87.09
PRK09224	504	threonine dehydratase; Reviewed	86.54
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	86.43
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.39
PRK11899	279	prephenate dehydratase; Provisional	86.32
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.1
PRK14645	154	hypothetical protein; Provisional	85.95
PLN02550	591	threonine dehydratase	85.52
PRK06545	359	prephenate dehydrogenase; Validated	84.92
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	84.69
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	84.66
COG2150	167	Predicted regulator of amino acid metabolism, cont	84.64
PRK14630	143	hypothetical protein; Provisional	84.49
PRK08198	404	threonine dehydratase; Provisional	84.13
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	84.04
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	84.03
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	83.82
PRK08198	404	threonine dehydratase; Provisional	83.78
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	83.7
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	83.18
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	83.14
PRK09084	448	aspartate kinase III; Validated	82.4
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	82.21
PRK06349	426	homoserine dehydrogenase; Provisional	82.08
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	82.02
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	81.91
PRK11898	283	prephenate dehydratase; Provisional	81.35
PRK08818	370	prephenate dehydrogenase; Provisional	80.65

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.5e-28  Score=263.34  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=146.6

Q ss_pred             CCCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHH
Q 017268          170 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV  247 (374)
Q Consensus       170 ~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L  247 (374)
                      ..+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|.+++|.++. ++++++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            3568888998 8889999999999999999999999999999999999998 78999999999999999885 5688999


Q ss_pred             HHHHHHHHhhc-----------------c-----------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          248 IQCLEAAIERR-----------------A-----------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       248 ~~~L~~~L~~r-----------------~-----------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      ++.|.++|..+                 .           ...|+|+|.|.|||||||+|+++|.++|++|++|||+|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            99999887421                 0           1148999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268          300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK  332 (374)
Q Consensus       300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~  332 (374)
                      ++|+|+|||+|.+|.|++++..++|+++|++++
T Consensus       821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            999999999999999998765599999998865

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.3e-27  Score=259.01  Aligned_cols=187  Identities=17%  Similarity=0.221  Sum_probs=159.6

Q ss_pred             CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe-eCCeeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268           37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE  115 (374)
Q Consensus        37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T-~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~  115 (374)
                      +.+.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++ +++++++|++
T Consensus       665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~-~~~~~~~l~~  742 (854)
T PRK01759        665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLL-EFDRRRQLEQ  742 (854)
T ss_pred             CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCC-CHHHHHHHHH
Confidence            334577788999999999999999999999999999999999999999 57788899999994 78887 4678999999


Q ss_pred             HHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCC
Q 017268          116 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDR  194 (374)
Q Consensus       116 ~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~Dr  194 (374)
                      .|.++|.+...       .. .. .+.+++.                    +.+..+|.|.|+| .+..+|+|+|.++||
T Consensus       743 ~L~~aL~~~~~-------~~-~~-~~~~~~~--------------------~~~~~~~~V~~dn~~s~~~T~iev~a~Dr  793 (854)
T PRK01759        743 ALTKALNTNKL-------KK-LN-LEENHKL--------------------QHFHVKTEVRFLNEEKQEQTEMELFALDR  793 (854)
T ss_pred             HHHHHHcCCCC-------cc-hh-ccccccc--------------------cCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence            99999998643       11 00 0011110                    1345689999999 889999999999999


Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      ||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.+++++.+ ++|+++|..+|
T Consensus       794 pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        794 AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999987755 99999998765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.1e-27  Score=260.39  Aligned_cols=163  Identities=24%  Similarity=0.385  Sum_probs=148.0

Q ss_pred             CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268          171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVI  248 (374)
Q Consensus       171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~  248 (374)
                      .+|.|.+++ .+.++++|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|.+++|.+++ ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            568888988 88899999999999999999999999999999999999986 5699999999999999885 56899999


Q ss_pred             HHHHHHHhhc---------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          249 QCLEAAIERR---------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       249 ~~L~~~L~~r---------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      +.|.++|.++         .                    +..|+|+|.|.|||||||+|+++|.++|++|++|||+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999888432         0                    1248999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcc
Q 017268          300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQ  334 (374)
Q Consensus       300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~  334 (374)
                      ++|+|+|||++.+|.|++++.+++|+++|+.++..
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988889999999998743

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.9e-27  Score=257.07  Aligned_cols=189  Identities=21%  Similarity=0.227  Sum_probs=160.6

Q ss_pred             CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268           37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKE  115 (374)
Q Consensus        37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~  115 (374)
                      +.+.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+|+++ .+.|+|+|++ .+|.++ +++++++|++
T Consensus       689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~  766 (884)
T PRK05007        689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRK  766 (884)
T ss_pred             CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHH
Confidence            334577788899999999999999999999999999999999999999866 6779999999 478877 4578999999


Q ss_pred             HHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCC
Q 017268          116 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDR  194 (374)
Q Consensus       116 ~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~Dr  194 (374)
                      .|.++|.+.....  +  ..    .+.+++.                    +++..+|.|.|+| .+..+|+|+|.++||
T Consensus       767 ~L~~aL~~~~~~~--~--~~----~~~~~~~--------------------~~~~~~~~V~~d~~~s~~~TvlEV~a~DR  818 (884)
T PRK05007        767 ALEQALTQSSPQP--P--KP----RRLPAKL--------------------RHFNVPTEVSFLPTHTDRRSYMELIALDQ  818 (884)
T ss_pred             HHHHHHcCCCCCc--c--cc----ccccccc--------------------CCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence            9999998864311  0  10    1111111                    1345789999999 899999999999999


Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268          195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      ||||++|+++|.++|++|+.|+|.|.|+++.|+|||++..|.+++ +++.+.|+++|..+|.
T Consensus       819 pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        819 PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988 5688999999988774

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1e-26  Score=252.86  Aligned_cols=190  Identities=24%  Similarity=0.322  Sum_probs=158.4

Q ss_pred             eeeecCC---CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCC-CHHHHHHHH
Q 017268           40 SVGVMPT---EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIK-DPKRLSTIK  114 (374)
Q Consensus        40 ~i~~~~~---~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~-~~~~~~~l~  114 (374)
                      .++..+.   .+.++|+|+++||||||++||++|+.+|+||++|+|+|+++ .+.|+|+|+++ +|.++. ++++|++|+
T Consensus       692 ~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~  770 (895)
T PRK00275        692 LIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIR  770 (895)
T ss_pred             EEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHH
Confidence            3555554   58999999999999999999999999999999999999765 55699999994 777643 457999999


Q ss_pred             HHHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCC
Q 017268          115 ELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKD  193 (374)
Q Consensus       115 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~D  193 (374)
                      +.|.++|.++..+.   ..+.    .+.+++.                    ..+..+|.|.+++ .+.++|+|+|+++|
T Consensus       771 ~~L~~~L~~~~~~~---~~~~----~~~~~~~--------------------~~~~~~~~V~i~~~~~~~~T~i~V~a~D  823 (895)
T PRK00275        771 EGLTEALRNPDDYP---TIIQ----RRVPRQL--------------------KHFAFPTQVTISNDAQRPVTVLEIIAPD  823 (895)
T ss_pred             HHHHHHHcCCCccc---hhhh----hhhhhhc--------------------cCCCCCCEEEEEECCCCCeEEEEEEECC
Confidence            99999999865311   0011    1111111                    1335679999999 88899999999999


Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268          194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  257 (374)
Q Consensus       194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~  257 (374)
                      |||||++|+++|+.+|+||++|+|.|.+|+++|+|||++++|.++.++.++++|+++|.++|..
T Consensus       824 rpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999988878999999999998853

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6.9e-26  Score=245.06  Aligned_cols=181  Identities=23%  Similarity=0.254  Sum_probs=151.5

Q ss_pred             cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268           44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  122 (374)
Q Consensus        44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  122 (374)
                      .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+|+. |.+.|+|+|+++ +|.+   +.++++|++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            6778999999999999999999999999999999999999964 566699999985 5553   2578899999999999


Q ss_pred             CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcchHHHH
Q 017268          123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  201 (374)
Q Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i  201 (374)
                      ++....    .+.   .++.+++.                    +.+..+|.|.+++ .+.++|+|+|+++||||||++|
T Consensus       761 ~~~~~~----~~~---~~~~~~~~--------------------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I  813 (869)
T PRK04374        761 GDLQKV----RPA---RRAVPRQL--------------------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV  813 (869)
T ss_pred             CCCCcc----ccc---cccCcccc--------------------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence            865311    011   11111111                    1346789999999 8889999999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268          202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       202 ~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      +++|+++|+||++|+|+|.+|+++|+|||++++|.++.++++ ++|+++|..+|.
T Consensus       814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999999999999999999999999998777655 999999988763

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.3e-25  Score=243.30  Aligned_cols=185  Identities=18%  Similarity=0.256  Sum_probs=151.5

Q ss_pred             ceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017268           39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL  117 (374)
Q Consensus        39 ~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L  117 (374)
                      +.+...+..+.++|+|+++||||||++||++|+.+|+||++|+|+|+. |.+.|+|+|.++ +|. ..+++++++|++.|
T Consensus       668 v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l  745 (856)
T PRK03059        668 VRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHEL  745 (856)
T ss_pred             EEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHH
Confidence            346667888999999999999999999999999999999999999875 556699999984 555 44667999999999


Q ss_pred             HHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcc
Q 017268          118 FNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPK  196 (374)
Q Consensus       118 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpG  196 (374)
                      .++|.++....   ..+    ..+.+++.                    +.+..++.|.+++ .+.++|+|+|+++||||
T Consensus       746 ~~~l~~~~~~~---~~~----~~~~~~~~--------------------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG  798 (856)
T PRK03059        746 AERLAEQAPLP---EPS----KGRLSRQV--------------------KHFPITPRVDLRPDERGQYYILSVSANDRPG  798 (856)
T ss_pred             HHHHcCCCCcc---hhh----cccccccc--------------------cCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence            99999865311   001    01111111                    1345678999998 88899999999999999


Q ss_pred             hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      ||++||++|+.+|+||++|+|+|.+|+++|+|||.++.   ..+++++++|++.|.++|
T Consensus       799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG---LSDNRLQIQLETELLDAL  854 (856)
T ss_pred             HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---CCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999996433   445678999999998876

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=3.3e-25  Score=241.13  Aligned_cols=191  Identities=26%  Similarity=0.372  Sum_probs=159.4

Q ss_pred             CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268           37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKE  115 (374)
Q Consensus        37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~  115 (374)
                      +.+.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+|+ ++.+.|+|+|++ .+|.++.+++++++|++
T Consensus       656 ~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~  734 (850)
T TIGR01693       656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQ  734 (850)
T ss_pred             CEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHH
Confidence            3445666556899999999999999999999999999999999999965 677889999999 47888877778999999


Q ss_pred             HHHHHHcCCCcccccccccCCCCCCc-chhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCC
Q 017268          116 LLFNVLRGYDDFRKAKTSLSPPGIMN-RERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKD  193 (374)
Q Consensus       116 ~L~~~L~~~~~~~~~~~~l~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~D  193 (374)
                      .|.++|.+.....   ..+.   ..+ .+++.                    +++..+|.|.|+| .+..+|+|+|.|+|
T Consensus       735 ~L~~~L~~~~~~~---~~~~---~~~~~~~~~--------------------~~~~~~~~V~~d~~~s~~~t~~~v~~~D  788 (850)
T TIGR01693       735 GLVDVLAGLAKDP---DTIS---ARRARRRRL--------------------QHFAVPPRVTILNTASRKATIMEVRALD  788 (850)
T ss_pred             HHHHHHcCCCccc---cccc---cccCCcccc--------------------cCCCCCCeEEEccCCCCCeEEEEEEECC
Confidence            9999998854311   0010   000 11111                    1345789999999 88899999999999


Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      |||||++|+++|+++|+||.+|+|.|.++++.|+|+|++..|.++.+ ++++.|+++|..+|
T Consensus       789 rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       789 RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999887 58899999988765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=2.1e-25  Score=242.68  Aligned_cols=163  Identities=25%  Similarity=0.326  Sum_probs=147.6

Q ss_pred             CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268          171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLPISSEAERERVI  248 (374)
Q Consensus       171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~-T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~  248 (374)
                      ..|.|.+.+ ...++++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|+++|+|+|.+++|.++.+++++++|+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            357888888 668999999999999999999999999999999999999 579999999999999999888877899999


Q ss_pred             HHHHHHHhhc------------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268          249 QCLEAAIERR------------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS  296 (374)
Q Consensus       249 ~~L~~~L~~r------------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~  296 (374)
                      +.|.++|.++            .                    +..|+|+|.|.|||||||+|+++|+++|++|++|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            9998887431            0                    1148999999999999999999999999999999999


Q ss_pred             ecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268          297 TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL  333 (374)
Q Consensus       297 T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~  333 (374)
                      |+|++++|+|||++..|.|+++++++.|+++|+++++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~  850 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA  850 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999988888999999998764

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=237.40  Aligned_cols=192  Identities=27%  Similarity=0.449  Sum_probs=160.6

Q ss_pred             eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268           40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  118 (374)
Q Consensus        40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~  118 (374)
                      .+++.+..++++|+|+++||||||++|+++|+.+||||++|+|+|+ ++.+.|+|+|+++ +|.+..+++++++|++.|.
T Consensus       723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~  801 (931)
T PRK05092        723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIE  801 (931)
T ss_pred             EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHH
Confidence            4667778899999999999999999999999999999999999996 4556699999984 6776667789999999999


Q ss_pred             HHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcch
Q 017268          119 NVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKL  197 (374)
Q Consensus       119 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGL  197 (374)
                      +++.+...+.   ..+.   ....+++ +                  ...+..+|.|.+++ .+.++++|.|+++|||||
T Consensus       802 ~~l~~~~~~~---~~~~---~r~~~~~-~------------------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGL  856 (931)
T PRK05092        802 DALSGEVRLP---EALA---KRTKPKK-R------------------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGL  856 (931)
T ss_pred             HHHcCCCCCc---cccc---cccCccc-c------------------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcH
Confidence            9998764311   0010   0000100 0                  01345679999999 888999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268          198 LFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  257 (374)
Q Consensus       198 l~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~  257 (374)
                      |++|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.+++.+++|++.|.+.|..
T Consensus       857 l~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        857 LYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             HHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998888899999999998854

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.5e-24  Score=233.06  Aligned_cols=181  Identities=24%  Similarity=0.289  Sum_probs=145.7

Q ss_pred             eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .++..+ .+.++|+|+|+||||||++||++|+.+||||++|+|+|.++.+.|+|+|+++ +|.+.    .++++++.|.+
T Consensus       591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~  664 (774)
T PRK03381        591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRR  664 (774)
T ss_pred             EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHH
Confidence            355566 8999999999999999999999999999999999999988888899999984 56542    36889999999


Q ss_pred             HHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcchH
Q 017268          120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL  198 (374)
Q Consensus       120 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl  198 (374)
                      +|.++....   ..+.        ++....    ....        ...+..++.|.+++ .+.++++|+|+++||||||
T Consensus       665 ~L~~~~~~~---~~~~--------~~~~~~----~~~~--------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLl  721 (774)
T PRK03381        665 ALDGDLDVL---ARLA--------AREAAA----AAVP--------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGLL  721 (774)
T ss_pred             HHcCCCchh---hhhh--------cccccc----cccc--------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhHH
Confidence            999854311   0010        000000    0000        01345678999999 7778999999999999999


Q ss_pred             HHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017268          199 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL  251 (374)
Q Consensus       199 ~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L  251 (374)
                      ++|+++|+.+|+||++|+|+|.||+++|+|||++++|.+++++  .+.|+++|
T Consensus       722 a~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        722 ARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             HHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            9999999999999999999999999999999999999998864  67777765

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.5e-24  Score=234.27  Aligned_cols=164  Identities=24%  Similarity=0.383  Sum_probs=143.2

Q ss_pred             CCEEEEEc-CC---CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCC-CHHHHH
Q 017268          172 RPQVTVLN-IE---KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPIS-SEAERE  245 (374)
Q Consensus       172 ~~~V~i~~-~~---~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~-~~~~~~  245 (374)
                      .|.|.+.+ ..   .+.++|.|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++. ++++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~  767 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIE  767 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHH
Confidence            45566766 43   58999999999999999999999999999999999987 57899999999999998854 457899


Q ss_pred             HHHHHHHHHHhhcc------------------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268          246 RVIQCLEAAIERRA------------------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI  295 (374)
Q Consensus       246 ~L~~~L~~~L~~r~------------------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i  295 (374)
                      +|++.|.++|.++.                              ...|+|+|.+.||||||++|+.+|+++|++|+.|+|
T Consensus       768 ~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI  847 (895)
T PRK00275        768 QIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI  847 (895)
T ss_pred             HHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEE
Confidence            99999998874210                              114899999999999999999999999999999999


Q ss_pred             eecCCeeeeEEEEEcCCCCCCCh-hHHHHHHHHHhhhhccc
Q 017268          296 STIGGKVKDTFYVTDVTGNPVDP-KIIDSIRRQIGHTKLQV  335 (374)
Q Consensus       296 ~T~g~~~~D~Fyv~d~~g~~l~~-~~~~~l~~~l~~~~~~~  335 (374)
                      .|.|+++.|+|||++.+|.|+++ +.+++|+++|..++.+.
T Consensus       848 ~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        848 ATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999975 68899999999977443

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=8.7e-24  Score=228.81  Aligned_cols=158  Identities=22%  Similarity=0.343  Sum_probs=137.4

Q ss_pred             CEEEE-Ec-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268          173 PQVTV-LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ  249 (374)
Q Consensus       173 ~~V~i-~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~  249 (374)
                      |.|.+ .. +..+.+.|.|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|..   +..++++++
T Consensus       677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~~  753 (869)
T PRK04374        677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLAA  753 (869)
T ss_pred             CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHHH
Confidence            44443 33 5668999999999999999999999999999999999998 589999999999988864   346888999


Q ss_pred             HHHHHHhhc----------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          250 CLEAAIERR----------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       250 ~L~~~L~~r----------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      .|.++|.++          .                    ...|+|+|.+.|||||||+|+.+|+++|++|+.|+|+|.|
T Consensus       754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g  833 (869)
T PRK04374        754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFG  833 (869)
T ss_pred             HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecC
Confidence            998887431          0                    0148999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268          300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL  333 (374)
Q Consensus       300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~  333 (374)
                      +++.|+|||+|.+|.++++..+++|+++|++++.
T Consensus       834 ~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        834 ERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            9999999999999999876555999999998774

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2e-23  Score=228.84  Aligned_cols=172  Identities=24%  Similarity=0.291  Sum_probs=150.2

Q ss_pred             CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268          171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVI  248 (374)
Q Consensus       171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~  248 (374)
                      .++.|.+.+ ...+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.++.|.+..+++++++|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            457777888 7778999999999999999999999999999999999998 58899999999999888877778999999


Q ss_pred             HHHHHHHhh----------c-cC---------------------CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268          249 QCLEAAIER----------R-AS---------------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS  296 (374)
Q Consensus       249 ~~L~~~L~~----------r-~~---------------------~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~  296 (374)
                      +.|..++.+          + .+                     ..|+|+|.+.||||||++|+++|+++|++|++|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            999888732          1 01                     148999999999999999999999999999999999


Q ss_pred             ecCCeeeeEEEEEcCCCCCCCh-hHHHHHHHHHhhhhcccccccccC
Q 017268          297 TIGGKVKDTFYVTDVTGNPVDP-KIIDSIRRQIGHTKLQVKRSTILA  342 (374)
Q Consensus       297 T~g~~~~D~Fyv~d~~g~~l~~-~~~~~l~~~l~~~~~~~~~~~~~~  342 (374)
                      |.|+++.|+|||++.+|.++.+ +.+++|+++|..++..-..++..+
T Consensus       878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~  924 (931)
T PRK05092        878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEARAA  924 (931)
T ss_pred             EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccccccc
Confidence            9999999999999999999864 578899999999886544444433

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.6e-23  Score=217.18  Aligned_cols=185  Identities=27%  Similarity=0.422  Sum_probs=150.2

Q ss_pred             eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe-eEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268           40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLF  118 (374)
Q Consensus        40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~-~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~  118 (374)
                      .+++.+..+.++|+|+++|+|.||+.+|+++...|+||++|+|+|+.++ +.|+|+|+++ +|.++. +++...++..|.
T Consensus       675 ~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~  752 (867)
T COG2844         675 LISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELI  752 (867)
T ss_pred             eeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHH
Confidence            4556677799999999999999999999999999999999999997655 6799999995 788775 567777888888


Q ss_pred             HHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcch
Q 017268          119 NVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKL  197 (374)
Q Consensus       119 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGL  197 (374)
                      +++..... .       |+..++.+++.+                    .+..+|.|.|.+ .+...++++|.+.|||||
T Consensus       753 ~~l~s~~~-~-------~~~~~r~~r~~~--------------------~f~i~p~v~i~~t~~~~~t~lEv~alDRpGL  804 (867)
T COG2844         753 EALLSGKA-Q-------PPRRRRIPRKLR--------------------HFPIPPRVTILPTASNDKTVLEVRALDRPGL  804 (867)
T ss_pred             HHHhcCCC-C-------CccccccCcccc--------------------eeccCCceeeccccCCCceEEEEEeCCcccH
Confidence            87765332 1       011123333322                    345789999999 777899999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          198 LFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       198 l~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      |++++++|++++++|++|+|.|.|+++.|+|+|++..|.++.++ ..+.+.+.|.+.+
T Consensus       805 La~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al  861 (867)
T COG2844         805 LAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL  861 (867)
T ss_pred             HHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988654 5555555555444

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=2.5e-23  Score=223.61  Aligned_cols=153  Identities=25%  Similarity=0.342  Sum_probs=133.1

Q ss_pred             CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268          171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQ  249 (374)
Q Consensus       171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~  249 (374)
                      ..+.|.+.+ . .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+.    .++++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence            356777877 7 899999999999999999999999999999999999999999999999999888653    2466777


Q ss_pred             HHHHHHhh----------c--c---------------------C-CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268          250 CLEAAIER----------R--A---------------------S-EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI  295 (374)
Q Consensus       250 ~L~~~L~~----------r--~---------------------~-~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i  295 (374)
                      .|.++|.+          +  .                     + ..|+|+|.+.||||||++|+.+|+++|+||++|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            77665431          1  0                     0 13899999999999999999999999999999999


Q ss_pred             eecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          296 STIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       296 ~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      .|.|+++.|+|||++.+|.+++++ +++|+++|+
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999866 788888775

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-23  Score=216.28  Aligned_cols=162  Identities=26%  Similarity=0.396  Sum_probs=142.1

Q ss_pred             CCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268          172 RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ  249 (374)
Q Consensus       172 ~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~  249 (374)
                      .|.|.+.. ...+.++|.|+++|+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. +.+...++.
T Consensus       671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~~~  749 (867)
T COG2844         671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAALRG  749 (867)
T ss_pred             CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHHHH
Confidence            46666666 6668999999999999999999999999999999999988 58999999999999999888 568888888


Q ss_pred             HHHHHHh-h--------cc----------C----------CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC
Q 017268          250 CLEAAIE-R--------RA----------S----------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG  300 (374)
Q Consensus       250 ~L~~~L~-~--------r~----------~----------~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~  300 (374)
                      .|.+++. .        +.          |          +.|+|||.+.||||||++|+++|++++++|++|||+|.|+
T Consensus       750 ~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GE  829 (867)
T COG2844         750 ELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGE  829 (867)
T ss_pred             HHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccc
Confidence            8877762 1        10          1          1489999999999999999999999999999999999999


Q ss_pred             eeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcc
Q 017268          301 KVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQ  334 (374)
Q Consensus       301 ~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~  334 (374)
                      +|+|+|||++..|.+++++..+.+.+.+..++..
T Consensus       830 rveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~  863 (867)
T COG2844         830 RVEDVFIVTDADGQALNAELRQSLLQRLLEALLP  863 (867)
T ss_pred             cceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999888778888888776654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=1e-22  Score=220.76  Aligned_cols=157  Identities=20%  Similarity=0.287  Sum_probs=135.5

Q ss_pred             CCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268          172 RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ  249 (374)
Q Consensus       172 ~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~  249 (374)
                      .|.|.+.+ +..+.+.|.|+++||||||+++|++|+.+|+||++|+|+| .+|.++|+|+|.++.|. ...+.+++++++
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~  743 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH  743 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence            46666777 7778999999999999999999999999999999999987 58999999999998777 445678999999


Q ss_pred             HHHHHHhhc----------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          250 CLEAAIERR----------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       250 ~L~~~L~~r----------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      .|.++|.++          .                    +..|+|+|.++||||||++|+.+|+++|++|+.|+|.|.|
T Consensus       744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~  823 (856)
T PRK03059        744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG  823 (856)
T ss_pred             HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            999887421          0                    1148999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCC-ChhHHHHHHHHHhhhh
Q 017268          300 GKVKDTFYVTDVTGNPV-DPKIIDSIRRQIGHTK  332 (374)
Q Consensus       300 ~~~~D~Fyv~d~~g~~l-~~~~~~~l~~~l~~~~  332 (374)
                      +++.|+|||++   .++ +++++++|+++|.+++
T Consensus       824 ~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        824 ERVEDTFLIDG---SGLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             CEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence            99999999954   334 3568899999998765

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=3e-20  Score=142.25  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhhhhc
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKL  333 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~~~~  333 (374)
                      |+|||.|+|||||||+|+++|.++|++|++|+|+|+|+++.|+|||++.+|.|+. ++++++|+++|.+++.
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999999999999999999997 4688999999998764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=6.9e-20  Score=139.24  Aligned_cols=69  Identities=28%  Similarity=0.434  Sum_probs=65.1

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~  330 (374)
                      .|+|||.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|++ ++.+++|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            37999999999999999999999999999999999999999999999999999996 5788999998865

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=3.6e-19  Score=136.26  Aligned_cols=71  Identities=24%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe--ecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhhhhcc
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS--TIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKLQ  334 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~--T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~~~~~  334 (374)
                      |+|+|.|.|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|.|++ +++++.|+++|.++++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999  999999999999 88898986 57889999999998764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=1.1e-17  Score=128.06  Aligned_cols=75  Identities=65%  Similarity=1.131  Sum_probs=71.7

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  258 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r  258 (374)
                      +|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++.+|.++.++.+.++|+++|..+|.+|
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999988654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.6e-16  Score=120.78  Aligned_cols=69  Identities=16%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.++.+++++++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999999999999999998888899998874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.69  E-value=3.3e-16  Score=141.21  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=109.6

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-----  256 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~-----  256 (374)
                      ..+.+|++.++|||||++.++++++++||||.+.++...+|.+.-++.|+.++       ...++|+..|...-.     
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-------~~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-------NAITLIESTLPLKGAELDLL   78 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-------hHHHHHHHHHHhhhhhcCeE
Confidence            36789999999999999999999999999999999999999999889886543       356677777654321     


Q ss_pred             ---hcc--------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCChhHHHH
Q 017268          257 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDS  323 (374)
Q Consensus       257 ---~r~--------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv~d~~g~~l~~~~~~~  323 (374)
                         ++.        +.++.++|.+.|||||+++||++|+++|+||..++..|++.  ...+.|.+.-.-.-|-+ ..++.
T Consensus        79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~~  157 (190)
T PRK11589         79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAAN  157 (190)
T ss_pred             EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHHH
Confidence               121        11489999999999999999999999999999999999985  67777877655444432 22344


Q ss_pred             HHHHHh
Q 017268          324 IRRQIG  329 (374)
Q Consensus       324 l~~~l~  329 (374)
                      |+++|+
T Consensus       158 L~~~l~  163 (190)
T PRK11589        158 IEQAFK  163 (190)
T ss_pred             HHHHHH
Confidence            444444

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=1.2e-15  Score=117.14  Aligned_cols=73  Identities=66%  Similarity=0.997  Sum_probs=66.9

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      |.|+|+++||||||++|+++|+.+||||++|+|+|.++.+.|+|+|+++ + |.++.+++++++|++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999999999999999984 5 67777888999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=2.8e-15  Score=114.79  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~--T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      |+++|.++|||||||+|+++|+++|++|+.|+|.  |.|++++|+||| +.+|.++.++++.+.|+++|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 8888889888899999999988763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.63  E-value=3.2e-15  Score=114.45  Aligned_cols=71  Identities=34%  Similarity=0.517  Sum_probs=63.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      ++|+|+++||||||++++++|+.+|+||++|+|+|+ ++.+.|+|+|+++ +|.++.+++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 5778899999984 7777767789999999998754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=7.8e-15  Score=112.72  Aligned_cols=72  Identities=24%  Similarity=0.377  Sum_probs=66.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~-g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      |+|+|+++||||||++|+++|+++|+||++|+++|.+|++.|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999999999999987 8877777899999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.59  E-value=1e-14  Score=111.71  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      +.|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|.+++|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            679999999999999999999999999999999987 69999999999998988877789999999987653

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.57  E-value=1.3e-13  Score=124.43  Aligned_cols=154  Identities=13%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      ...+.+|+++|+||||+.+.++++|+++||||.+.+...+++.+..++.|+.    .+    ..++.|+..|.. +....
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~   75 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL   75 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence            5678999999999999999999999999999999999999999999998853    21    356788888876 33222


Q ss_pred             cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268          126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL  205 (374)
Q Consensus       126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l  205 (374)
                      ++.     +      .. ++...     .                .+      ......+.++|++.|||||+++++++|
T Consensus        76 ~L~-----i------~v-~~~~~-----~----------------~~------~~~~~~~~v~v~G~DrPGIV~~vT~~l  116 (190)
T PRK11589         76 DLL-----I------VM-KRTTA-----R----------------PR------PAMPATVWVQVEVADSPHLIERFTALF  116 (190)
T ss_pred             CeE-----E------EE-Eeccc-----c----------------cc------ccCCceEEEEEEECCCCCHHHHHHHHH
Confidence            211     1      00 01000     0                00      001123679999999999999999999


Q ss_pred             HhCCceEEEEEEEecCC------eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          206 TDMQYVVFHGMVNTGRT------EAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       206 ~~~glnI~~A~i~T~~g------~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +++|+||.+.+..|.+.      .+.-.|.|.-|.+..      ...|++.|+.
T Consensus       117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~  164 (190)
T PRK11589        117 DSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKA  164 (190)
T ss_pred             HHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHH
Confidence            99999999999888652      455566676665532      3455555544

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.56  E-value=3e-14  Score=110.08  Aligned_cols=69  Identities=32%  Similarity=0.424  Sum_probs=62.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee-cCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK  332 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T-~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~  332 (374)
                      +++|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||+|..|...++++.++++++|.+++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999997 89999999999999777444578888999988765

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=5.7e-14  Score=108.48  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=63.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      .++|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.++.+. ..++++++++++.|.++|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999997 79999999999998776 4556799999999988773

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.4e-13  Score=119.46  Aligned_cols=141  Identities=17%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-----  256 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~-----  256 (374)
                      .++.+|++++.||||+...+++..+++||||.++++...|+.+.-+..|+.+++       ...+|+..|...=+     
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~d-------av~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWD-------AVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHH-------HHHHHHHHhhcccccCCeE
Confidence            357899999999999999999999999999999999999999998888987643       56677777653211     


Q ss_pred             ---hcc--------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHH
Q 017268          257 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDS  323 (374)
Q Consensus       257 ---~r~--------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~  323 (374)
                         .|.        +.++.++|.+.|||||+.++|++|.++|++|+++...|+-  +.....|+.+-.-+.|.+ ..+..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence               111        1258999999999999999999999999999999999985  446778998777777775 34455


Q ss_pred             HHHHHhh
Q 017268          324 IRRQIGH  330 (374)
Q Consensus       324 l~~~l~~  330 (374)
                      |+++|+.
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            5555543

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.41  E-value=1.5e-12  Score=97.77  Aligned_cols=65  Identities=23%  Similarity=0.388  Sum_probs=53.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      .+|+|+++||||||++|+++|+.+|+||++|+|+|+. |.+.|+|+|.++ +|.   ++   +.+++.|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~---~~---~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG---ET---AALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc---ch---HHHHHHHHHhh
Confidence            5899999999999999999999999999999999975 555699999984 554   21   45677776655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.36  E-value=4.9e-12  Score=133.94  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=108.7

Q ss_pred             EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---ccC
Q 017268          185 TVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---RAS  260 (374)
Q Consensus       185 t~v~V~~-~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---r~~  260 (374)
                      -.++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|....|.+.++....+.++..+...+.-   -.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4678887 9999999999999999999999999999 8888999999998888776543334444433322211   012


Q ss_pred             C----ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268          261 E----GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL  333 (374)
Q Consensus       261 ~----~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~  333 (374)
                      +    .+++||++.||||+|++|+++|.    +|.+|+++|.|..++|+||+..  |     .....++.++..+++
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~--~-----~~r~~~~~~~~~~~~  691 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP--G-----FDRATVERDVTRVLA  691 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC--c-----ccHHHHHHHHHHHHh
Confidence            2    47999999999999999999999    8999999999999999999961  1     235666777766554

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.36  E-value=6.1e-12  Score=96.04  Aligned_cols=68  Identities=34%  Similarity=0.471  Sum_probs=59.8

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  118 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~  118 (374)
                      +++|+|+++|+||+|++|+++|+.+|+||++|+++|.++.+.++|+|+++ ++.++ +++++++|++.|-
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence            36899999999999999999999999999999999988877899999984 67766 6678888877764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.33  E-value=1.2e-11  Score=92.86  Aligned_cols=65  Identities=22%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      ..|.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.      ....|+++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            46899999999999999999999999999999997 57999999999998775      2345566665544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.32  E-value=1e-11  Score=108.02  Aligned_cols=158  Identities=16%  Similarity=0.201  Sum_probs=111.7

Q ss_pred             CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      .++++.|++++.||||+...||++..++||||+++++.+.|+.+..+..|+.    . |   +...+|++.|.. +..+.
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s-~---dav~~le~~l~~-l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S-W---DAVTLLEATLPL-LGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C-H---HHHHHHHHHhhc-ccccC
Confidence            5678999999999999999999999999999999999999999999998864    2 2   456788888876 44444


Q ss_pred             cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268          126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL  205 (374)
Q Consensus       126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l  205 (374)
                      ++.     +.   +++...+                         ..+      .....+.+.|.+.|||||+.++|..|
T Consensus        73 ~L~-----v~---m~rt~~~-------------------------~~~------a~~~~v~v~v~a~DrpgIv~~~T~lf  113 (176)
T COG2716          73 DLL-----VV---MKRTGAH-------------------------PTP------ANPAPVWVYVDANDRPGIVEEFTALF  113 (176)
T ss_pred             CeE-----EE---EeecCCC-------------------------ccC------CCCceEEEEEEecCCccHHHHHHHHH
Confidence            421     10   0010000                         000      12345679999999999999999999


Q ss_pred             HhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          206 TDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       206 ~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ..+|+||.+....|.  .+.-.-.|++.-.-.-+..-  ....|++.++.
T Consensus       114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~a  161 (176)
T COG2716         114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEA  161 (176)
T ss_pred             HhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHH
Confidence            999999998888774  34444456655433333221  34455555544

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.31  E-value=2.1e-11  Score=93.07  Aligned_cols=67  Identities=24%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      +.++|.++|+||+|++++++|+++|+||.+|.++|.++++.|+|+|.++++.+. ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999889999999999888877 5568888888774

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.28  E-value=3.8e-11  Score=90.42  Aligned_cols=70  Identities=43%  Similarity=0.750  Sum_probs=64.0

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK  332 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~  332 (374)
                      |.+.|.++||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+.+..++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999998899999999999999866668888999887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.24  E-value=9.3e-11  Score=88.29  Aligned_cols=69  Identities=28%  Similarity=0.453  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      |.+.|.++|+||+|++++++|+++|+||.++++.+.++.+.|+|++.++++.+. +.++++++++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999998889999999999988884 456999999998765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.23  E-value=4.6e-10  Score=119.09  Aligned_cols=143  Identities=14%  Similarity=0.070  Sum_probs=113.9

Q ss_pred             EEEEEEe-CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccc
Q 017268           50 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  128 (374)
Q Consensus        50 ~~I~I~~-~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  128 (374)
                      ..++|+. +|++|++++++++|+.+|++|++|++.+ +|.+...|.|.. ..|.+. ++   ..+++.+...+.++.+  
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~--  618 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP--  618 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence            4677777 9999999999999999999999999999 888889999987 466653 54   6789999998888664  


Q ss_pred             ccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHhC
Q 017268          129 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM  208 (374)
Q Consensus       129 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~~  208 (374)
                           +.           .                      ..+|.+.|.     .++++|.+.||+|+|+.++++|.  
T Consensus       619 -----~~-----------~----------------------~~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~--  653 (693)
T PRK00227        619 -----DP-----------A----------------------PGITATFWH-----GNILEVRTEDRRGALGALLGVLP--  653 (693)
T ss_pred             -----cc-----------c----------------------CCCCceEee-----CcEEEEEeCccccHHHHHHHHhh--
Confidence                 10           0                      113455553     27899999999999999999999  


Q ss_pred             CceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          209 QYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       209 glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                        +|..|++.|.|..++|.|++...        ....+++..+..+|
T Consensus       654 --~~~~~~~~~~g~~~~~~~~~~~~--------~~r~~~~~~~~~~~  690 (693)
T PRK00227        654 --DLLWITASTPGATMIVQAALKPG--------FDRATVERDVTRVL  690 (693)
T ss_pred             --hhhhHhhcCCCcceEEEEEecCc--------ccHHHHHHHHHHHH
Confidence              89999999999999999999831        12455666655544

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.95  E-value=9.1e-09  Score=76.93  Aligned_cols=68  Identities=31%  Similarity=0.478  Sum_probs=60.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      .+.|.++|+||+|++++++|+++|++|.++.+.+.+++..++|++..+++.. .++++++++++.|...
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            5889999999999999999999999999999999877999999999988776 4456899999988664

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.95  E-value=9.7e-09  Score=76.78  Aligned_cols=69  Identities=41%  Similarity=0.678  Sum_probs=60.8

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT  331 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~  331 (374)
                      +.+.|.++|+||+|++|+.+|+++|++|.++++.|.++...++|++.+.+|.+.++++.+.|+..|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998889999999999887775556778888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.79  E-value=1.8e-07  Score=76.53  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=88.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE  264 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tv  264 (374)
                      -+|.|...++||-|+.++..|.++|+||+...|.-.++.-+-.+.|..++.       .    .+.|+++ .-.+...-+
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-------A----~~~Lee~-gF~Vr~~dV   71 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-------A----HSVLEEA-GFTVRETDV   71 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-------H----HHHHHHC-CcEEEeeeE
Confidence            468999999999999999999999999999999988887777777765421       1    2233321 001223468


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEc
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD  310 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d  310 (374)
                      +-|...|+||-|++|+.+|.+.++|+.++...+.. +++.-.|.+.|
T Consensus        72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            99999999999999999999999999999987764 45666665533

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.74  E-value=1.2e-07  Score=73.02  Aligned_cols=64  Identities=19%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      +.+|++.++||||+++.++++++++|+||.+.+..+.++++.-.+.|..+       ++..++|+++|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999876       34677888887664

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.72  E-value=1.4e-07  Score=72.73  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=53.8

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  120 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~  120 (374)
                      +..|+++|+||||+++.++++|+++||||.+.+..+.++.+...+.|.-+        ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999988752        24567888888873

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.50  E-value=5.8e-07  Score=68.92  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-|++.      ..+.|++.|..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence            378999999999999999999999999999999999988888988877552      23555555554

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.48  E-value=1e-06  Score=68.03  Aligned_cols=65  Identities=22%  Similarity=0.350  Sum_probs=52.6

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      +.|++.|+||||+.++|+++|+++|+||.+++.++.++.+...+.+..+    +.    ..+.|++.|.. +..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~----~~~~l~~~l~~-~~~   66 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WD----AIAKLEAALPG-LAR   66 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cc----cHHHHHHHHHH-HHH
Confidence            6799999999999999999999999999999999998888766666531    11    23678877777 443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.47  E-value=1.1e-06  Score=67.73  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +++++.|+||||+++++++.|+++|+||.+++.++.++++.-.+.+..++       ...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-------~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-------DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-------ccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999887777776542       124556655554

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.41  E-value=9.5e-07  Score=67.71  Aligned_cols=62  Identities=16%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +++|.++||||++++|+++|+++|+||...+-.+.++.-.-.|.+.-+.+..     .+.|+++|..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~-----~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD-----SEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC-----HHHHHHHHHH
Confidence            4789999999999999999999999999999899988777777776554322     3455555544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.40  E-value=3.3e-06  Score=62.12  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe--eEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~--~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      +.|.|.++||||+|++++.+|+++|+||..+.+.+.++.  ....+.+.+.         ...+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence            578999999999999999999999999999999998773  3333333331         334566666665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.37  E-value=4.8e-06  Score=61.22  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g--~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  .....+.+.+.        ...+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHc
Confidence            46889999999999999999999999999999999765  44444444442        345555555554

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.26  E-value=3.5e-06  Score=61.24  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=58.3

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  120 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~  120 (374)
                      ++|+|.+||+.||=.++++++.+.|++|..+.+.|.|.....+|+|...  ...+  +-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999863  2222  35899999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.16  E-value=6.9e-06  Score=64.86  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD  234 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~  234 (374)
                      .++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+..++
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~   51 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE   51 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC
Confidence            46899999999999999999999999999999999888887777777653

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.15  E-value=8.9e-06  Score=59.17  Aligned_cols=67  Identities=19%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      ++|+|.|||+.||=.++++++.+.|++|..+.+.|.|....-+|+|...... +  .-+|..|++.|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence            3689999999999999999999999999999999999999999999864322 2  24889999888653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.14  E-value=8.2e-06  Score=64.44  Aligned_cols=64  Identities=20%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..|++.|+|+||++++|+++|+++|+||.+.+.++.++.+...+.+.-+  +...    ..+.+++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence            5789999999999999999999999999999999988877777777643  2111    23678888877

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.10  E-value=2.1e-05  Score=60.69  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=47.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR------TEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~------g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +|++.|+|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.+..|++.      ...++++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~------~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT------DLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC------CHHHHHHHHHH
Confidence            378999999999999999999999999999999976      556666666665431      13455555544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.09  E-value=7.8e-06  Score=62.30  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +|.|.|+||||++++|+++|+++|+||...+..+..  ....|++.-.-..|-.+...+.|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999988742  22357775432223111135666666554

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.09  E-value=2.4e-05  Score=59.58  Aligned_cols=63  Identities=11%  Similarity=0.114  Sum_probs=44.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +|++.|+||||++++|+++|+++|+||.+.+..+.  ++.+.-.+.+..+.+. .    ..+.|++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFD-L----SREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCC-C----CHHHHHHHHHH
Confidence            47899999999999999999999999999999973  3444434444444221 1    24556655544

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.07  E-value=1.7e-05  Score=62.73  Aligned_cols=50  Identities=10%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  233 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~  233 (374)
                      .+++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence            57899999999999999999999999999999999988877766666554

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.07  E-value=2.8e-05  Score=60.00  Aligned_cols=62  Identities=27%  Similarity=0.348  Sum_probs=48.1

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC------CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN------DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~------~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .|+|.|+|+||++++|+++|+++|+||.+.+..+.+      +.+...+.+.-+ .+  .    ....+++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHH
Confidence            378999999999999999999999999999999976      445555666542 11  1    13677777777

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=1.7e-05  Score=62.80  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      .+.|+|.|+|+||++++++++|+++|+||.+.+-.+.++.+...+.+.-+  +.+. +   .+.|++.|.+ +.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~-l~~   70 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE-LGK   70 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH-HHH
Confidence            67899999999999999999999999999999999877776665555432  2111 2   2567777776 443

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.82  E-value=0.00058  Score=65.62  Aligned_cols=107  Identities=10%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR-----  258 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r-----  258 (374)
                      +|++.|+||||+++.++++|+++|+||.+.+.++.  +|++.-.+.+..+.. ..    ..+.|++.|..++..+     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CC----CHHHHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999999999999999985  477776777765432 12    2445666555522111     


Q ss_pred             ----cCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          259 ----ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       259 ----~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                          ..+...|-|-+--+-.-|.+|......-.++.+-+-+-+
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence                123345555555666788888888887766555444433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.79  E-value=0.00079  Score=64.93  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=72.3

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---  257 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---  257 (374)
                      ...+|++.|+|||||++.++++|+++|+||.+.+..+  .+|.+.-.+.+.-. ..+    ...+.|++.|...-+.   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~----~~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLI----FNLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCC----CCHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999999999  77876666666541 111    1256666666553211   


Q ss_pred             -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                           ..++...|-|.+.-+---|..+.+....-.++.+-+-+-|
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS  124 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence                 1123344555444445566667777666555444444433

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.75  E-value=0.00025  Score=54.73  Aligned_cols=64  Identities=31%  Similarity=0.457  Sum_probs=49.6

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|+|.+.||||+|++|++++++.|+||..+.+.+.  ++.+.-.|.+.-.     +-++++.|.++|..
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence            3679999999999999999999999999999999995  4566666766433     23677888777765

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.74  E-value=0.00069  Score=65.36  Aligned_cols=111  Identities=10%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---  257 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~--T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---  257 (374)
                      ...+|+|.|+|||||++.|+++|+++|+||.+.+.+  +..+.+.-.+.+.+......    ..+.|+++|...-..   
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l   83 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM   83 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence            356799999999999999999999999999999997  44444443433332211112    244566655543211   


Q ss_pred             -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                           ...+...|-|.+--+..-|..|..+...-.++.+-+-+-+
T Consensus        84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence                 1123344555555556677777777777666655544444

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.69  E-value=0.0033  Score=51.92  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccccc
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKA  130 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~  130 (374)
                      .|.|..-++||-|+..+.+|..+|+||..-.|.-+++--..-+.|.++       +     .-.+.|++  +|       
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d-----~A~~~Lee--~g-------   63 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D-----EAHSVLEE--AG-------   63 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H-----HHHHHHHH--CC-------
Confidence            688999999999999999999999999987777777654445555331       1     11233333  22       


Q ss_pred             ccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHhCCc
Q 017268          131 KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQY  210 (374)
Q Consensus       131 ~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~~gl  210 (374)
                                               |                 .|.+      .-++-|..+|+||=|..|+++|.++++
T Consensus        64 -------------------------F-----------------~Vr~------~dVlaVEmeD~PG~l~~I~~vl~d~di   95 (142)
T COG4747          64 -------------------------F-----------------TVRE------TDVLAVEMEDVPGGLSRIAEVLGDADI   95 (142)
T ss_pred             -------------------------c-----------------EEEe------eeEEEEEecCCCCcHHHHHHHHhhcCc
Confidence                                     1                 0111      234778899999999999999999999


Q ss_pred             eEEEEEEEec-CCeEEEEEEEEe
Q 017268          211 VVFHGMVNTG-RTEAYQEFYIRH  232 (374)
Q Consensus       211 nI~~A~i~T~-~g~~~dvF~V~~  232 (374)
                      |+.....++. ...++-+|.+.+
T Consensus        96 NldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          96 NLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             CceeeeeeeecCceEEEEEEhhH
Confidence            9999999874 567776666544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.68  E-value=6.2e-05  Score=59.18  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=44.6

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  233 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~  233 (374)
                      ..+|+|.++||||+.+.++++|+++|+||.+-...-.+|++.-.+.|.-+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence            46799999999999999999999999999998887788988878888664

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.61  E-value=0.002  Score=62.14  Aligned_cols=108  Identities=9%  Similarity=0.106  Sum_probs=73.6

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh----
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER----  257 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~----  257 (374)
                      ..+|+|.|+||||+++.+|++|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|++.|......    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            5679999999999999999999999999999999853  4566656666655432      245566665543211    


Q ss_pred             ----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 ----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                          ..++...|-|.+.-+---|..+..+...-.++.+-+-+-|
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence                1122344555555566778888888877776655555444

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.57  E-value=0.00011  Score=57.76  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      ...|+|.+.||||+.+.++++|+++|+||++-...-..+.+...+.|.-+  ...    .....++..|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence            46899999999999999999999999999998877778888888878542  111    22356666666643

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.56  E-value=0.00032  Score=67.35  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      .|+|.|+|+||+.+.|+++|+++|+||.+.+.++.  ++.+...+.+.-+  +..+    ..+.|++.|..++..+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~~~   72 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAEKF   72 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999985  4666666666542  2222    13577777777444433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.54  E-value=0.00071  Score=52.13  Aligned_cols=63  Identities=24%  Similarity=0.379  Sum_probs=44.7

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  118 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~  118 (374)
                      .+.|.|.+.||||+|++|+.+++..|+||.+.++.+.  ++.+...|.|.-       .+.+.++.|-..|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999996  345555666643       13344455544443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.54  E-value=0.00032  Score=67.69  Aligned_cols=67  Identities=16%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEE--eeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~--T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....|+|.|+||||+.++|+++|+++|+||.+.+.+  +..+.+...+.+.+. ....+    ..+.|++.|.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHH
Confidence            456899999999999999999999999999999998  444555544333321 11122    23567777776

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.51  E-value=0.00044  Score=66.69  Aligned_cols=71  Identities=21%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe--eCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T--~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      ....|+|.|+||||+.+.|+++|+++|+||.+.+.++  .++.+...+.+.-  +..+    ...+.|++.|.+ +.++.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~-l~~~l   77 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA-LAEEF   77 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH-HHHHh
Confidence            4678999999999999999999999999999999999  7776555555542  1122    125778888887 44433

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.49  E-value=0.0012  Score=49.79  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      |.|.+.||||+|.+|+.++++.|+||..+...+.. +.+...|-+.-.     +.++++.+.++|..
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            78999999999999999999999999999887753 455555655333     13566777777664

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.33  E-value=0.0011  Score=50.50  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=44.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .++|.+.||+|+|++|+.++++.|+||.+..+.+. +.    .+++-. ..  +-++++.|.++|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-v~--~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-TI--EFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-ec--CHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999875 22    333211 11  23567777777764

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.32  E-value=0.0027  Score=47.82  Aligned_cols=61  Identities=13%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      |.|.+.|+||+|++|+.+++..|.||.+....+.. +.+...|.+.-       .+.+.++.+...|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence            67899999999999999999999999988887754 44445565543       123455666666654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.28  E-value=0.17  Score=53.74  Aligned_cols=197  Identities=13%  Similarity=0.205  Sum_probs=116.5

Q ss_pred             CCCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           45 PTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        45 ~~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      ...+...|.|++.   +.+|+++++..+|+..|+||+.-.  +  ......|.|..          +..++.-+.|++.+
T Consensus       344 ~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f  409 (587)
T PRK07431        344 VETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAF  409 (587)
T ss_pred             EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHh
Confidence            3456778888886   789999999999999999997544  2  23344555543          22345556677766


Q ss_pred             cCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEE-eCCCcchHHH
Q 017268          122 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SKDRPKLLFD  200 (374)
Q Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~-~~DrpGLl~~  200 (374)
                      ..+..    ...+.|+       +.        ..             ...+.-.+. ...+...|++. .++.+|++++
T Consensus       410 ~~~~~----~~~~~~~-------~~--------~~-------------~~~~v~gIa-~~~~~~~i~l~~~~~~~g~~a~  456 (587)
T PRK07431        410 ELEDS----QIEINPT-------AS--------GQ-------------DEPEVRGVA-LDRNQAQLAIRNVPDRPGMAAS  456 (587)
T ss_pred             ccCCc----ccccCcc-------cc--------CC-------------CCCcEEEEE-ccCCEEEEEECCCCCCccHHHH
Confidence            43321    0001100       00        00             011111111 13345566664 5788999999


Q ss_pred             HHHHHHhCCceEEEEEEEe-cC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c--c-CCceEEEEEeC---
Q 017268          201 IVCTLTDMQYVVFHGMVNT-GR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R--A-SEGLELELCTE---  270 (374)
Q Consensus       201 i~~~l~~~glnI~~A~i~T-~~--g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r--~-~~~tvieV~~~---  270 (374)
                      +...|+++|++|..-.... .+  |..--.|.+...+      ...+.++.+.|...+.. .  . ..-..|.|.+.   
T Consensus       457 if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~  530 (587)
T PRK07431        457 IFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKED------REAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMP  530 (587)
T ss_pred             HHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHH------HHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcc
Confidence            9999999999998764432 22  2333345554321      11223332233322211 0  1 23467888886   


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEE
Q 017268          271 DRVGLLSDITRIFRENSLSIKRAE  294 (374)
Q Consensus       271 DRpGLL~~It~~L~~~~i~I~~a~  294 (374)
                      .+||++.++.++|++.||+|....
T Consensus       531 ~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        531 GTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             CCcCHHHHHHHHHHHCCCcEEEee
Confidence            889999999999999999996665

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.27  E-value=0.0016  Score=48.27  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  308 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv  308 (374)
                      .+.|..+|+||.|++|+++|++.|+||.+..+...++.  -++.+
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            57899999999999999999999999999998776663  45555

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.23  E-value=0.0011  Score=47.33  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEc
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD  310 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d  310 (374)
                      ++|...|+||.|.+++..|.+.|+||.+..+...+ +++.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999988765 66777776644

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.20  E-value=0.0019  Score=62.26  Aligned_cols=69  Identities=12%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      ...|+|+|+||||+.++++++|+++|+||.+.+.++.  ++.+...+.+..+ .+.      ..+.|++.|.+ +..+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~-l~~~l   77 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAP-IAARF   77 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHH-HHHHh
Confidence            5689999999999999999999999999999999863  3444455555432 221      13678888877 44333

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.20  E-value=0.0034  Score=46.32  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  298 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~  298 (374)
                      +.|..+|+||+|++|+++|++.|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            4678999999999999999999999998876643

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.15  E-value=0.0032  Score=46.81  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEE
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVT  309 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~  309 (374)
                      +.+.|..+|+||.|.++++.|+++|++|.+.......  ....-.|.++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4678999999999999999999999999998876652  2334456564

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.14  E-value=0.0033  Score=49.10  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      .+.+...|+||+|++++++|+..|+||.+..+....  |..--++.+..  |    ++...+++.+.|.+..
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C----CHHHHHHHHHHHhCCc
Confidence            489999999999999999999999999999997543  32332333321  2    2346677777776543

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.07  E-value=0.0058  Score=44.91  Aligned_cols=62  Identities=19%  Similarity=0.386  Sum_probs=44.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+.   + + ..++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence            57889999999999999999999999999998875 3333333323232   1 2 456666666664

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.05  E-value=0.0054  Score=47.28  Aligned_cols=51  Identities=18%  Similarity=0.352  Sum_probs=40.8

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCC
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGN  314 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~  314 (374)
                      +.+.+..+|+||.|++|.+.|+++|+||.+......+. ...=.|||... |.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~   53 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH   53 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC
Confidence            45778889999999999999999999999998776643 34557888544 54

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.04  E-value=0.005  Score=45.59  Aligned_cols=39  Identities=15%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR   88 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~   88 (374)
                      .+++|..+|+||.|++++.+|+++|+||.+..++..++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            468899999999999999999999999999998876654

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.03  E-value=0.004  Score=55.56  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ..+.|.+.|+||+|++|+.+|+++|+||.++.+..........+.+.-. |   ++..+++|+.+|.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~K   66 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999996633332223333322 1   12235666666554

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.02  E-value=0.0068  Score=44.65  Aligned_cols=61  Identities=16%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-----CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-----~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      +.|..+|+||+|++|+.+++.+|+||.+.......     +.+...|.+..       .+.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999988766532     23333444432       122455566666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.01  E-value=0.0026  Score=45.35  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEe
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT   96 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~   96 (374)
                      +.|..+|+||.+++++.+|.++|+||....+...+ +.....|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            46789999999999999999999999999988876 4555666664

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.01  E-value=0.0059  Score=46.96  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ..|.+...|+||+|.+|+.+|+.+|.||.+..+.-..+. ..-+-.+..  |   ++..+++|...|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhC
Confidence            578999999999999999999999999999998743332 222222212  2   23566777777665

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.97  E-value=0.015  Score=46.70  Aligned_cols=85  Identities=8%  Similarity=0.104  Sum_probs=54.2

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCc
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEG  262 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~  262 (374)
                      ...+.+...|+||+|++|++.|+..|+||.+..+.-. ...+.- +.+.-. +     +...+++.+.|.+..       
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSR-mtivv~-~-----~~~i~Qi~kQL~KLi-------   73 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSR-IWLLVN-D-----DQRLEQMISQIEKLE-------   73 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceE-EEEEEc-C-----chHHHHHHHHHhCCc-------
Confidence            3459999999999999999999999999999888643 322222 222222 1     136777777776533       


Q ss_pred             eEEEEEeCCCccHHHH-HHHH
Q 017268          263 LELELCTEDRVGLLSD-ITRI  282 (374)
Q Consensus       263 tvieV~~~DRpGLL~~-It~~  282 (374)
                      .++.|.-.+.-.++|. +...
T Consensus        74 dVikV~~l~~~~~v~~e~~~~   94 (96)
T PRK08178         74 DVLKVRRNQSDPTMFNKIAVF   94 (96)
T ss_pred             CEEEEEECCCchhHHHHHHHH
Confidence            4566655433334333 4433

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.94  E-value=0.0083  Score=45.23  Aligned_cols=63  Identities=19%  Similarity=0.205  Sum_probs=46.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|.+.||||+|++|++.|+++|++|......+. ++.+.-.|-+...+.    +.+++.|.++|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~----~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM----NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch----HHHHHHHHHHHhc
Confidence            57899999999999999999999999999987553 244555555533210    1266777777764

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.93  E-value=0.0046  Score=46.94  Aligned_cols=37  Identities=8%  Similarity=0.084  Sum_probs=33.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE  223 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~  223 (374)
                      .+.|.+.||+|++++|+.++++.|+||.+..+.+. +.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~   38 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR   38 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence            37899999999999999999999999999999776 44

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.93  E-value=0.0065  Score=44.43  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=37.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEE
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYV  308 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv  308 (374)
                      +.|.+.|+||+|.+|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999988765  455556656

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.0046  Score=58.10  Aligned_cols=66  Identities=15%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ..+++++.|+|++||++.|++.|+++|+||.++..++.  .|++.-.-..... +.+.    ..+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~-~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE-GGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC-CCcc----cHHHHHHHHHH
Confidence            45789999999999999999999999999999999963  4555433333332 2222    34555555554

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0043  Score=58.29  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      ....+++.|+|++|+.++|++.|+.+||||.++..++.  ++++..-.....  .+.+.    ..+.+++.+.. +.+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~-~a~   76 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP-LAE   76 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH-HHH
Confidence            46799999999999999999999999999999999963  344443211111  23332    23567777776 444

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.87  E-value=0.0091  Score=44.68  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +.+.|.+.|+||+|.+|++.|+++|++|..+...+..+ ......+++..    .+..+++++.+.|..
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence            35789999999999999999999999999998765432 22222223222    134566666666654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.80  E-value=0.0069  Score=47.36  Aligned_cols=65  Identities=15%  Similarity=0.152  Sum_probs=47.1

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .++.+...|+||+|.+|+..|.++|+||.++.+........-.+-+.-..|   ++..++++...|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence            468899999999999999999999999999998765544333332222112   23566777777765

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.77  E-value=0.009  Score=47.89  Aligned_cols=65  Identities=22%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .+...|.++..|+||.|++|+++|+..|.||.+-.+.-++. ++.-+..+..   +    + ..++.|.+.|.+
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~----~-~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D----D-QRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C----c-hHHHHHHHHHhC
Confidence            34567999999999999999999999999999887766543 3332222221   1    1 355666666666

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.74  E-value=0.0073  Score=43.94  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      ++.|..+|+||-|.+++..|+++|+||.+......+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            467899999999999999999999999988865543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.72  E-value=0.011  Score=51.98  Aligned_cols=68  Identities=22%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCChhHHHHHHHHHhhhhccccc
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR  337 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~--~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~~~~  337 (374)
                      .+++|...|+||.|.+|+..|+++|+||.+..+...++.  ..-+|.|.   |   ++..+++|...|.+ +...-+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~---d~~~i~qi~kQl~K-li~V~~   71 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G---DDKVLEQITKQLNK-LVDVIK   71 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-CccEEE
Confidence            478999999999999999999999999999988766533  33344442   2   24567888888876 444443

acetohydroxyacid synthase is a synonym.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.68  E-value=0.014  Score=43.22  Aligned_cols=47  Identities=11%  Similarity=0.080  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eEEEEEEEE
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-T-EAYQEFYIR  231 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g-~~~dvF~V~  231 (374)
                      ..+.+..+|+||.|++++++|+++|+||......... + ...-.+.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4578899999999999999999999999988776642 2 333345554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.68  E-value=0.011  Score=45.39  Aligned_cols=62  Identities=5%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEE-EEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..+.+...|+||.|++|+++|+..|+||.+-.+.-+. .+..- ++.+.    |    +++..+.|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhC
Confidence            4689999999999999999999999999987776443 34432 33332    2    22455666666655

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.66  E-value=0.012  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678999999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.64  E-value=0.012  Score=42.89  Aligned_cols=45  Identities=16%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEE
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIR  231 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V~  231 (374)
                      +.+.+.|++|++++++.+|+++|+||.+......+  +...-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            67889999999999999999999999999988754  6666667773

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.64  E-value=0.016  Score=43.29  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=35.7

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEe
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT   96 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~   96 (374)
                      -|.|.+.|+||++++++.+|+.+|+||.+....+..+ +......++
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            3778899999999999999999999999888766432 434333333

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.64  E-value=0.0099  Score=53.07  Aligned_cols=64  Identities=9%  Similarity=0.084  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      ..+.+.+.|+||+|++++++|+.+|+||.+..+..  ..|..  .+.+.-+.+     +...++|++.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~-----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGD-----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECC-----HHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999975  23433  333333322     224678888877764

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.62  E-value=0.0091  Score=44.50  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV  308 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv  308 (374)
                      +-+..+|+||.+++|++.|+++|+||.+......  ++.+.-+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4568999999999999999999999999887553  3455555555

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.57  E-value=0.023  Score=50.12  Aligned_cols=71  Identities=20%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcccccccc
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTI  340 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~  340 (374)
                      .+++|...|+||.|++|+..|+++|+||.+..+....+  ...-+|.+.   |   ++..++++...|.+ +...-+-..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~K-LidV~~V~~   75 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNK-LIDVLKVVD   75 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-cccEEEEEe
Confidence            47899999999999999999999999999998765542  233344442   2   24567788877776 444444333

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.56  E-value=0.018  Score=43.30  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      .+.+.+.|+||++++++++++++|+||......+. ++.+.-.|.+...+.     +..++++.++|.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHh
Confidence            47899999999999999999999999999877553 466655566654321     125566655554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.45  E-value=0.024  Score=49.81  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..++|...|+||.|++|+++|+.+|+||.+-.+...+ ++.. .++.|.    +    ++...+.|.+.|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence            4688999999999999999999999999998888765 3444 445553    2    12455667777766

acetohydroxyacid synthase is a synonym.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.44  E-value=0.028  Score=41.25  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  298 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~  298 (374)
                      .+.+.++|+||.|++|++.|++++++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47889999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.43  E-value=0.023  Score=41.54  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~  232 (374)
                      +.+.++|+||.+++++.+|+++|+||........  ++.+.-.+.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~   49 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ   49 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence            5788999999999999999999999998887763  345444444443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.42  E-value=0.027  Score=49.72  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=46.4

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..+.|...|+||.|++|+++|+.+|+||.+-.+.... ++.. .++.|..        ++..++.+.+.|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence            4689999999999999999999999999998877664 3444 4454432        22455666666666

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.41  E-value=0.026  Score=41.44  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=37.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH  232 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~  232 (374)
                      .+.+.++|+||.|++++..|+++++||.+....+. ++...-.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~   49 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG   49 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence            47889999999999999999999999998888765 344443444543

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.38  E-value=0.033  Score=40.75  Aligned_cols=45  Identities=11%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeE-EEEEE
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAA-AVVHV   95 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~-dvf~V   95 (374)
                      .+.+.+.|+||++++|+.+|+.+|+||.+....+. +++.. ..|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   48 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV   48 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE
Confidence            46789999999999999999999999999988775 44444 34444

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.34  E-value=0.027  Score=43.33  Aligned_cols=61  Identities=15%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +.+.+...++||.|.+|+..|..+|.||++..+.-.  ++...-++-+ . +     +..+++|...|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhc
Confidence            578999999999999999999999999999998763  3334445544 2 1     2345666666554

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.32  E-value=0.0047  Score=45.70  Aligned_cols=46  Identities=20%  Similarity=0.149  Sum_probs=37.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~  232 (374)
                      +.+.+.|+||++++++.+++++|+||......+.++.+.-.|.+..
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~   47 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS   47 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence            5678999999999999999999999988766555566665665544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.31  E-value=0.019  Score=41.71  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEE
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI  230 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V  230 (374)
                      +.+..+|+||-|++++.+|+++|+||.+.......  +...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67889999999999999999999999888765543  444434444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.29  E-value=0.0052  Score=45.42  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  308 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv  308 (374)
                      +-+.+.|+||+|.+|+..|++.|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888776655555444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.28  E-value=0.042  Score=39.04  Aligned_cols=61  Identities=25%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      |.|.+.|+||++.+|+..|.+++++|....+...+ +...-.|.+...     +...++.+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            46889999999999999999999999999988765 223333333222     23456666666653

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.24  E-value=0.021  Score=42.52  Aligned_cols=46  Identities=17%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~  232 (374)
                      +.+..+|+||.+++++++|+++|+||.+.....  .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            456899999999999999999999999888765  3567776676654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.15  E-value=0.042  Score=42.25  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      ..+.+...|+||.|++++++|+..|+||.+..+.. .+ +..--++.|.  +      +...+.|.+.|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~------~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S------ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C------CchHHHHHHHHhcC
Confidence            35899999999999999999999999999999975 33 4444444442  2      23566777776553

>PRK08577 hypothetical protein; Provisional

Probab=96.11  E-value=0.11  Score=44.35  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             CEEEEEc-C--CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHH
Q 017268          173 PQVTVLN-I--EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERV  247 (374)
Q Consensus       173 ~~V~i~~-~--~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L  247 (374)
                      ..+.+.+ .  ....+.+.+.+.|+||+|++++++|+++|+||.+....+.  ++.+.-.|.+.-++.     +..++.+
T Consensus        42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l  116 (136)
T PRK08577         42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEEL  116 (136)
T ss_pred             CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHH
Confidence            3455555 3  3347789999999999999999999999999999888764  344444444443321     1234555


Q ss_pred             HHHHH
Q 017268          248 IQCLE  252 (374)
Q Consensus       248 ~~~L~  252 (374)
                      .+.|.
T Consensus       117 ~~~L~  121 (136)
T PRK08577        117 EEELK  121 (136)
T ss_pred             HHHHH
Confidence            55554

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.11  E-value=0.036  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  298 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~  298 (374)
                      +.|..+|+||-|.++++.|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.08  E-value=0.04  Score=37.11  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=31.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      |.+.++|+||++.+|+.+|+++|++|..+......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07431 aspartate kinase; Provisional

Probab=96.06  E-value=0.9  Score=48.25  Aligned_cols=168  Identities=17%  Similarity=0.194  Sum_probs=102.3

Q ss_pred             eCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccccccccc
Q 017268           56 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSL  134 (374)
Q Consensus        56 ~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l  134 (374)
                      ..+.+|++++|...|+.+|+||.--......+ .....|.|...          ...+..+.|.+ +..+..        
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~~~~--------  338 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAPALG--------  338 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHHHcC--------
Confidence            46889999999999999999998554333222 23456777431          11222222332 221110        


Q ss_pred             CCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHHHHHHHHHhCCce
Q 017268          135 SPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIVCTLTDMQYV  211 (374)
Q Consensus       135 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~~i~~~l~~~gln  211 (374)
                                                           ...+.+   ..+...|.+.+.   +.+|+++++..+|++.|++
T Consensus       339 -------------------------------------~~~i~~---~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~  378 (587)
T PRK07431        339 -------------------------------------GAEVLV---ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGIN  378 (587)
T ss_pred             -------------------------------------CCcEEE---eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCc
Confidence                                                 001122   124566777774   7999999999999999999


Q ss_pred             EEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh----hc-c-------C-----------CceEEEE-
Q 017268          212 VFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----RR-A-------S-----------EGLELEL-  267 (374)
Q Consensus       212 I~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~----~r-~-------~-----------~~tvieV-  267 (374)
                      |....  + .+. .-.|.|..         ...++..+.|++.+.    +. .       +           .-..|+| 
T Consensus       379 i~~i~--s-Se~-~Is~vv~~---------~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~  445 (587)
T PRK07431        379 IRMIS--T-SEV-KVSCVIDA---------EDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIR  445 (587)
T ss_pred             EEEEE--c-CCC-EEEEEEcH---------HHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccCCEEEEEEC
Confidence            96544  2 222 22244433         234455555655541    10 0       0           0124444 


Q ss_pred             EeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268          268 CTEDRVGLLSDITRIFRENSLSIKRAEI  295 (374)
Q Consensus       268 ~~~DRpGLL~~It~~L~~~~i~I~~a~i  295 (374)
                      ...+.||++++|...|+++|++|.....
T Consensus       446 ~~~~~~g~~a~if~~l~~~~i~id~i~~  473 (587)
T PRK07431        446 NVPDRPGMAASIFGALAEANISVDMIVQ  473 (587)
T ss_pred             CCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence            3568899999999999999999998854

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.96  E-value=0.044  Score=41.70  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCC
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTG  313 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g  313 (374)
                      .|-+..+|+||-|+++...|+.+|||+.+..-...... -.=.||| |.+|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            34556689999999999999999999999988776544 4557777 4446

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK08577 hypothetical protein; Provisional

Probab=95.95  E-value=0.076  Score=45.33  Aligned_cols=43  Identities=23%  Similarity=0.474  Sum_probs=38.1

Q ss_pred             cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC
Q 017268           44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN   86 (374)
Q Consensus        44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~   86 (374)
                      .+....+.|.|.+.|+||+|++|+.+|+.+|+||.+....+..
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            4555688999999999999999999999999999998887754

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.92  E-value=0.067  Score=40.44  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +-+...|+||-|++|...|+++|+||.+....-... ...=.|||.- .|.. .+...+.+-+.|..
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECCC-CCHHHHHHHHHHHH
Confidence            345568999999999999999999999997665443 5566788844 3542 22344444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.88  E-value=0.061  Score=40.31  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG  220 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~  220 (374)
                      +.+..+|+||-|++++.+++++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998876543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=95.80  E-value=0.34  Score=48.87  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=67.8

Q ss_pred             EEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---Hhhc
Q 017268          184 YTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IERR  258 (374)
Q Consensus       184 ~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~---L~~r  258 (374)
                      ...|++. ..++||.++++..+|++.|+||......... |...-.|.|...         ..++..+.|.+.   +..+
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~~~  332 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIGAE  332 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcCcc
Confidence            4445554 4678999999999999999999965443222 244445666432         223333444432   1111


Q ss_pred             ----cCCceEEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 017268          259 ----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE  294 (374)
Q Consensus       259 ----~~~~tvieV~~---~DRpGLL~~It~~L~~~~i~I~~a~  294 (374)
                          ...-.+++|.+   .|+||++++|.++|++.|++|....
T Consensus       333 ~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        333 SVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             eEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence                12245688866   6999999999999999999998863

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.74  E-value=0.068  Score=42.47  Aligned_cols=51  Identities=18%  Similarity=0.391  Sum_probs=41.2

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCC
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGN  314 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~  314 (374)
                      +.|-+..+|+||-|+++...|+++|||+.+..-.-.... -.=.|||. .+|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~   66 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK   66 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence            566777799999999999999999999999998776544 34578884 4565

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.71  E-value=0.1  Score=36.95  Aligned_cols=45  Identities=27%  Similarity=0.502  Sum_probs=35.8

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeE-EEEEEe
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA-AVVHVT   96 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~-dvf~V~   96 (374)
                      |.|.++|+||.++.++..|..++++|.+..+...++... ..|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            467899999999999999999999999998877653333 344443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.70  E-value=0.059  Score=39.80  Aligned_cols=54  Identities=24%  Similarity=0.488  Sum_probs=37.2

Q ss_pred             CCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          271 DRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       271 DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      |+||+|.+|+..|..+|+||+++.+....  +...-++-+.   |.   +..+++|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~---~~---~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS---GD---DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE---S----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe---eC---chhHHHHHHHHhc
Confidence            78999999999999999999999998843  3344444332   21   2345667766665

>PRK04435 hypothetical protein; Provisional

Probab=95.67  E-value=0.11  Score=45.10  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe-eEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~-~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ...+....|.+...|+||++++|+.+++.+|+||..-......++ +...|.|...  +.    ...++.|-+.|++
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li~~L~~  134 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELLEKLRN  134 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHHHHHHc
Confidence            457788899999999999999999999999999998876554433 4455666431  11    1245556555554

>PRK04435 hypothetical protein; Provisional

Probab=95.61  E-value=0.11  Score=45.05  Aligned_cols=68  Identities=10%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       180 ~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      .......+.+.+.|+||+|++|+.+++++|+||........ +|.+.-.|.+...+.     ...++.|.+.|.
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~  133 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR  133 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence            34567789999999999999999999999999998887654 566666666655321     124555555554

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.59  E-value=0.061  Score=40.00  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=35.5

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV  308 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv  308 (374)
                      +.+.+..+|+||.|.+++++|+++|+||.++...-.  ++...=.|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            468899999999999999999999999998865432  2333344544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.41  E-value=0.067  Score=35.97  Aligned_cols=35  Identities=37%  Similarity=0.615  Sum_probs=31.7

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN   86 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~   86 (374)
                      |.+.++|++|++++++++|..+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987754

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.35  E-value=0.19  Score=38.49  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeC
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHV  233 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~  233 (374)
                      .+.+..+|+||.|+++..+|+++|+||.+-..... .+...-.|+|...
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            46677899999999999999999999998876654 3344455777543

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.33  E-value=0.7  Score=46.51  Aligned_cols=99  Identities=12%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             CEEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268          183 DYTVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R  258 (374)
Q Consensus       183 ~~t~v~V~---~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r  258 (374)
                      +...|+|.   ..+++|+++++..+|.++|++|.........  ..-.|.|...         ..+++.+.|.+.+.. .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~~---------d~~~a~~~L~~~~~~~~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDET---------DADEAVRALKDQSGAAG  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHhcC
Confidence            45667787   5788999999999999999999744332111  2223555321         233344445443311 0


Q ss_pred             -----c-CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 017268          259 -----A-SEGLELELCTE---DRVGLLSDITRIFRENSLSIKR  292 (374)
Q Consensus       259 -----~-~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~  292 (374)
                           . ..-..|.|.+.   ++||+++++.++|++.||||..
T Consensus       328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence                 1 22356677775   7999999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK07334 threonine dehydratase; Provisional

Probab=95.28  E-value=0.11  Score=52.51  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=47.5

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-----CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-----GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-----g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|+|.+.||||+|.+|+++|++.++||.++...+.     ++.+.-.|.+.-.     +.++++.+.+.|..
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999998764     2343333433222     23567777777664

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.09  E-value=0.11  Score=38.54  Aligned_cols=46  Identities=28%  Similarity=0.524  Sum_probs=35.9

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-C-CeeEEEEEE
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHV   95 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~-~~~~dvf~V   95 (374)
                      +.+.+..+|+||.+++++.+|+++|+||.+....-. . +....+|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            578999999999999999999999999997765443 2 233345555

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.97  E-value=0.15  Score=38.92  Aligned_cols=50  Identities=16%  Similarity=0.288  Sum_probs=39.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP  315 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~  315 (374)
                      +-+..+|+||-|+++...|+.+|+|+.+......... ..=.||| |.+|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            4455689999999999999999999999998776544 4557888 444654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.74  E-value=0.047  Score=41.51  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeE--EEEEcCCCCCCC-hhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDT--FYVTDVTGNPVD-PKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~--Fyv~d~~g~~l~-~~~~~~l~~~l~~  330 (374)
                      .+|+++.-||-.+||+|-+|..+|+-|.+|.|.-+  +++...+  |.+.+. ++.++ +....++.+.+..
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~   72 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK   72 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence            47899999999999999999999999999999654  4565555  444443 34454 3344555555443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.72  E-value=0.14  Score=49.18  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=44.0

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVD  317 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~  317 (374)
                      .|.|-+..+|+||.|+++...|+++|||+.+..-.-.+++ -.=.||| |.+|..-+
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d  249 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED  249 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence            3666677789999999999999999999999998877555 4558888 55676543

>PRK07334 threonine dehydratase; Provisional

Probab=94.43  E-value=0.26  Score=49.86  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee----C-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH----N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~----~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      -...|.|.+.||+|+|++|+.++++.++||.+....+.    . +.+...|.|.-       .+.+.++.|...|++
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999998765    3 33334444432       133556666666665

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.38  E-value=0.028  Score=44.04  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             EEEEEeCC-CccHHHHHHHHHHhCCceEEEEEEee-----cC----CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTED-RVGLLSDITRIFRENSLSIKRAEIST-----IG----GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~D-RpGLL~~It~~L~~~~i~I~~a~i~T-----~g----~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +|.|.+.| ++|++++|+++|+++|+||...+--+     .+    ....-.|.|+   |.+.   ..+.|+++|..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence            47899999 99999999999999999996654321     11    2455577775   3332   35666666664

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.28  E-value=0.25  Score=36.47  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          193 DRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       193 DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      |+||.|.+++++|...|+||.+..+..  .++..--++.+... .      ...+.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-~------~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-D------REIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--C------CHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-c------hhHHHHHHHHhc
Confidence            789999999999999999999999987  34555444444432 1      245566666654

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.09  E-value=0.21  Score=47.90  Aligned_cols=55  Identities=16%  Similarity=0.376  Sum_probs=45.1

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEEEcCCCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD-TFYVTDVTGNPVD  317 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D-~Fyv~d~~g~~l~  317 (374)
                      .|.|-+..+|+||.|+++...|+.+|||+.+....-.+..-.+ .||| |.+|..-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence            5778888889999999999999999999999998777665544 6776 66677644

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.97  E-value=0.29  Score=44.98  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHH
Q 017268          260 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDS  323 (374)
Q Consensus       260 ~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~  323 (374)
                      +..+.+-+.-.||||.+..|+.+|.++||||..+.+.-.  |+.+.-+.-+    ..+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence            345678888899999999999999999999999998764  4555555544    34444454443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK08210 aspartate kinase I; Reviewed

Probab=93.97  E-value=1.8  Score=43.65  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             CEEEEEEEeCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc---
Q 017268          183 DYTVITMRSKDR-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR---  258 (374)
Q Consensus       183 ~~t~v~V~~~Dr-pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r---  258 (374)
                      +...|+|...+. ||.++++..+|+++|+||......  ...  -.|.+..         +..+++.+.|.+. ...   
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~  335 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTE--VVFTVSD---------EDSEKAKEILENL-GLKPSV  335 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence            455667766554 999999999999999999877443  222  2355542         1233444444331 111   


Q ss_pred             cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 017268          259 ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKR  292 (374)
Q Consensus       259 ~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~  292 (374)
                      ...-.+|.|.+.   ++||++.++.++|++.||+|..
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            123466777775   8999999999999999999974

>PRK06635 aspartate kinase; Reviewed

Probab=93.80  E-value=4  Score=41.13  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             EEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccc
Q 017268           51 SIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  128 (374)
Q Consensus        51 ~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  128 (374)
                      .|++. ..++||.++++..+|+.+|+||.--......+ .....|.|..          +..++..+.|.+ +..+..  
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~--  330 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG--  330 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC--
Confidence            34443 45689999999999999999999543222222 2344565632          112233333443 111110  


Q ss_pred             ccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHHHHHHH
Q 017268          129 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDIVCTL  205 (374)
Q Consensus       129 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~i~~~l  205 (374)
                           +                                      ..|.+   ..+...+++.+   ++.||.++++..+|
T Consensus       331 -----~--------------------------------------~~i~~---~~~ia~isvvG~~~~~~~g~~a~i~~~L  364 (404)
T PRK06635        331 -----A--------------------------------------ESVTY---DDDIAKVSVVGVGMRSHPGVAAKMFEAL  364 (404)
T ss_pred             -----c--------------------------------------ceEEE---cCCeEEEEEECCCCCCCchHHHHHHHHH
Confidence                 0                                      01111   12456677765   68999999999999


Q ss_pred             HhCCceEEEE
Q 017268          206 TDMQYVVFHG  215 (374)
Q Consensus       206 ~~~glnI~~A  215 (374)
                      ++.|+||...
T Consensus       365 a~~~Ini~~i  374 (404)
T PRK06635        365 AEEGINIQMI  374 (404)
T ss_pred             HHCCCCEEEE
Confidence            9999999764

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.79  E-value=0.16  Score=42.32  Aligned_cols=53  Identities=15%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKV-KDTFYVTDVTGNP  315 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~-~D~Fyv~d~~g~~  315 (374)
                      .+.|-+..+|+||-|++|...|+.+|||+.+......+..- .=.||| |.+|.+
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            36677777999999999999999999999999988875553 446777 445654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=93.50  E-value=2.4  Score=43.67  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268          182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  257 (374)
Q Consensus       182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-  257 (374)
                      .+...|++.+.   +.+|+++++..+|+++|++|......+..  .--.|.|...         ..++..+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~---------d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA---------DLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence            34667888764   78999999999999999999865443322  2223555432         223333444443322 


Q ss_pred             ---c---cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEE
Q 017268          258 ---R---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEI  295 (374)
Q Consensus       258 ---r---~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i  295 (374)
                         .   ...-.+|.|.+.   +++|++.++..+|++.||+|....-
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence               1   123467888886   7999999999999999999986553

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.34  E-value=0.45  Score=51.69  Aligned_cols=64  Identities=16%  Similarity=0.263  Sum_probs=48.5

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ...|.|.+.||+|+|.+|+.++++.++||..+.+.+..  +.+.-.|-|.-.     +-+++..|.+.|..
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            35899999999999999999999999999999988753  444445544322     12567777777764

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.15  E-value=0.59  Score=34.62  Aligned_cols=31  Identities=13%  Similarity=0.040  Sum_probs=27.0

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 017268          188 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT  219 (374)
Q Consensus       188 ~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T  219 (374)
                      .|.-+||||-|.+++.+++. |.||...+-..
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~   32 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN   32 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence            57789999999999999999 99999875544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.11  E-value=0.59  Score=34.62  Aligned_cols=61  Identities=21%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      +.|.-+|+||=|.+++.+++. |.||..-+-...+-....+++...-      .+++..+.|.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            357789999999999999999 9999976554433222333333221      123455677777765

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=92.76  E-value=0.64  Score=50.54  Aligned_cols=63  Identities=22%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      .+.|.|.+.||+|+|++|+.+++..++||....+.+.  ++.+.-.|.|.-.+      -..+.++.+.|.
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~------~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN------LQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC------HHHHHHHHHHHh
Confidence            3578899999999999999999999999999999875  46665556655432      245666666654

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.51  E-value=1.3  Score=33.23  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~  232 (374)
                      +.+..+|+||-|+++..+|+++|+||..-...-.. ....-.|+|.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            34556899999999999999999999988655433 23334455654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.42  E-value=0.097  Score=40.93  Aligned_cols=66  Identities=18%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             EEEEEeCC-ccchHHHHHHHHHhcCCeEEEEEEEee-----C----CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268           51 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH-----N----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  120 (374)
Q Consensus        51 ~I~I~~~D-rpGL~a~I~~vL~~~glnI~~A~I~T~-----~----~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~  120 (374)
                      .|+|.++| ..|++++++++|+++|+||.+-+-.+.     +    ..+...|.|..+    +. +   .+.++..|.+ 
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~-   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE-   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH-
Confidence            37999999 999999999999999999986554321     1    234456777642    21 3   2567887776 


Q ss_pred             HcCCC
Q 017268          121 LRGYD  125 (374)
Q Consensus       121 L~~~~  125 (374)
                      +..+.
T Consensus        72 la~el   76 (84)
T cd04871          72 LASEL   76 (84)
T ss_pred             Hhccc
Confidence            44433

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=92.19  E-value=14  Score=37.12  Aligned_cols=107  Identities=14%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             CCeEEEEEE---eCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           47 EEHTSIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        47 ~~~~~I~I~---~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      .+...|+|.   ..+++|.++++..+|..+|+||..-... .. .....|.|..          +..+++.+.|.+.+..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s-~~~Is~~V~~----------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PS-ETSISLTVDE----------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CC-CceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence            345567777   4678999999999999999999733211 11 2233455532          1123333444442211


Q ss_pred             CCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHH
Q 017268          124 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFD  200 (374)
Q Consensus       124 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~  200 (374)
                       ..       +                                      ..+.+   ..+...|.+.+   +++||++++
T Consensus       326 -~~-------~--------------------------------------~~i~~---~~~~a~IsvVG~~~~~~~g~~a~  356 (401)
T TIGR00656       326 -AG-------L--------------------------------------DRVEV---EEGLAKVSIVGAGMVGAPGVASE  356 (401)
T ss_pred             -cC-------C--------------------------------------ceEEE---eCCeEEEEEECCCcccCccHHHH
Confidence             00       0                                      01112   23456677777   479999999


Q ss_pred             HHHHHHhCCceEEE
Q 017268          201 IVCTLTDMQYVVFH  214 (374)
Q Consensus       201 i~~~l~~~glnI~~  214 (374)
                      +..+|++.|+||..
T Consensus       357 i~~~L~~~gIni~~  370 (401)
T TIGR00656       357 IFSALEEKNINILM  370 (401)
T ss_pred             HHHHHHHCCCcEEE
Confidence            99999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.14  E-value=0.8  Score=49.61  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ...|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-+.-.     +-+++..|-+.|..
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999887653 34444444222     12567777777664

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.13  E-value=1.1  Score=34.74  Aligned_cols=62  Identities=8%  Similarity=0.077  Sum_probs=36.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ++.|.-+||||-|.+++++|+..+|+ +..+-....+.+.-.+-+...+|    +++.+.+.+.|..
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~anI~-~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPRNIT-EFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCCcee-EEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence            57889999999999999999955555 22222222233333333333311    3556666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.92  E-value=0.35  Score=49.08  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRR  326 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~  326 (374)
                      .+.|-+.-.|+||.+..|+.+|+++|+||.+.++...|+.+.-+|-+   ++ ++.++.+++|++
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~  398 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA  398 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence            47788899999999999999999999999999999888777666644   33 444455566553

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=91.80  E-value=0.73  Score=46.39  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=43.7

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVD  317 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~  317 (374)
                      .+.|-+..+|+||.|+++...|+.+|||+.+..-.-.+.+ -.=.||| |..|..-+
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d  352 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS  352 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence            4566677789999999999999999999999998855544 5668888 55676543

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=91.79  E-value=0.79  Score=49.69  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=47.0

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCee-EEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~-~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ...|.|.+.||+|+|++|+.+++..++||.+....+.+++. ...|.|.-       .+.+.+..|-..|.+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999987765444 34455532       123455666555554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.76  E-value=0.78  Score=46.56  Aligned_cols=50  Identities=16%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEE
Q 017268           46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV   95 (374)
Q Consensus        46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V   95 (374)
                      ......|.+.-+|+||.+++|+.+|+++|+||..-+..+.++.+..++-+
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            44778899999999999999999999999999998888888666666655

>PRK09034 aspartate kinase; Reviewed

Probab=91.66  E-value=3.4  Score=42.49  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268          183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R  258 (374)
Q Consensus       183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r  258 (374)
                      +.+.|++..   .+++|+++++..+|+++|+||...   + .+..--.|.|...+-   . ...+..+.+.|...+.. .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~~---~-~a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQL---T-PKKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHHh---h-HHHHHHHHHHHHHhhCCce
Confidence            456677764   678999999999999999999875   2 222223466665321   0 00113333334332211 0


Q ss_pred             ---cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268          259 ---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  310 (374)
Q Consensus       259 ---~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d  310 (374)
                         ...-..|.|.+.   ++||++.++..+|++.||+|....-.+.  ...-.|.|..
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e~~Is~vV~~  434 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--EISIMFGVKN  434 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--cceEEEEEcH
Confidence               122467888553   8999999999999999999988764442  1333465543

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=91.62  E-value=1.9  Score=34.17  Aligned_cols=69  Identities=14%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  255 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L  255 (374)
                      ..+.+.+..+|+||-|+++...|+.+|+|+..-...-. +....-.|+|.-. |.  .++ ..+.+-+.|.+.|
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~--~~~-~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK--SAP-ALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC--CCH-HHHHHHHHHHHHh
Confidence            44667777799999999999999999999987777653 3333445777653 33  122 4444444444443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.55  E-value=0.63  Score=40.99  Aligned_cols=47  Identities=11%  Similarity=0.096  Sum_probs=38.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eEEEEEEEEe
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-T-EAYQEFYIRH  232 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g-~~~dvF~V~~  232 (374)
                      -+.+.+.++||.|.+++++++++|.||..++.+..+ | .+.--|.+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            367889999999999999999999999999998853 3 5554455544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.47  E-value=0.94  Score=33.42  Aligned_cols=47  Identities=21%  Similarity=0.403  Sum_probs=36.2

Q ss_pred             CCCeEEEEEEeC----CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268           46 TEEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD   97 (374)
Q Consensus        46 ~~~~~~I~I~~~----DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~   97 (374)
                      ..+...|+|.++    |.||+.++++..|++.|+||.-..  |   ...+.+.|..
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            346678899988    799999999999999999998655  3   3456666754

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.39  E-value=1.1  Score=48.55  Aligned_cols=64  Identities=25%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|.|.+.||+|+|.+|+.++++.++||.++.+.+.. +.+.-.|-|.-.     +-.++..|-.+|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999998764 333333333221     12566777666654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=91.28  E-value=0.52  Score=44.18  Aligned_cols=37  Identities=14%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          261 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       261 ~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                      +..+|.+...|-||+|.+|+.+|+.+|.||.++-+--
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            3578999999999999999999999999999988643

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.03  E-value=0.82  Score=41.96  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=41.1

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEe
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRH  232 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~  232 (374)
                      ...+.+.-.|+||.+..++.+|.++|+||...++...  +|.++-+..|..
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            4456777899999999999999999999999999864  678887766654

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=90.86  E-value=1  Score=39.73  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=35.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEE
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYV  308 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv  308 (374)
                      +.+.+.++||.|.++|..++++|.||.+++-...++  .+.--|.+
T Consensus         5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            678899999999999999999999999999776654  44433333

>PRK08818 prephenate dehydrogenase; Provisional

Probab=90.85  E-value=0.53  Score=47.13  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             ceEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC
Q 017268          262 GLELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDV  311 (374)
Q Consensus       262 ~tvieV~~~-DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~  311 (374)
                      .+.|.+.-+ |+||.|++|+.+|+++||||.+..+ .....-.-.|||.-.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            467777776 9999999999999999999999998 333333334988544

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.80  E-value=11  Score=41.71  Aligned_cols=106  Identities=6%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268          182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  257 (374)
Q Consensus       182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-  257 (374)
                      .+...|+|.+.   ++||+++++..+|+++|++|......+..  .--.|.|...+.     +...+.|.+.+...+.. 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~d~-----~~av~~L~~~f~~el~~~  385 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQSDA-----AKAKRALEEEFALELKEG  385 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence            45677888764   68999999999999999999765443322  222455554211     11222333333222221 


Q ss_pred             cc------CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 017268          258 RA------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE  294 (374)
Q Consensus       258 r~------~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~  294 (374)
                      ..      ..-.+|.|.+.   ++||++.++..+|.+.||+|....
T Consensus       386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            11      23467888776   789999999999999999998765

>PRK06291 aspartate kinase; Provisional

Probab=90.76  E-value=22  Score=36.66  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             CCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268           46 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  122 (374)
Q Consensus        46 ~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  122 (374)
                      ..+...|+|.+.   +.+|+++++..+|+.+|+||.--...+  ......|.|..          +..++..+.|.+.+.
T Consensus       318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~  385 (465)
T PRK06291        318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFG  385 (465)
T ss_pred             eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence            334566777764   689999999999999999998543222  22334555543          112233334444333


Q ss_pred             CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHH
Q 017268          123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLF  199 (374)
Q Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~  199 (374)
                      ...        .                                      ..|.+   ..+...|.|.+.   +++|+.+
T Consensus       386 ~~~--------~--------------------------------------~~i~~---~~~~a~IsvvG~gm~~~~gv~~  416 (465)
T PRK06291        386 EGL--------V--------------------------------------RDVTF---DKDVCVVAVVGAGMAGTPGVAG  416 (465)
T ss_pred             Hhc--------C--------------------------------------cceEE---eCCEEEEEEEcCCccCCcChHH
Confidence            210        0                                      01112   124566777774   7999999


Q ss_pred             HHHHHHHhCCceEEEEEEEe
Q 017268          200 DIVCTLTDMQYVVFHGMVNT  219 (374)
Q Consensus       200 ~i~~~l~~~glnI~~A~i~T  219 (374)
                      ++..+|+..|+||..-...+
T Consensus       417 rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        417 RIFSALGESGINIKMISQGS  436 (465)
T ss_pred             HHHHHHHHCCCCEEEEEecc
Confidence            99999999999998444333

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=90.71  E-value=1.6  Score=47.30  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      .+.|.|.+.||+|+|++|+.+++.+++||.+.++.+.. +.+.-.|.|.-.+      -..+..|-..|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~------~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN------YKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC------HHHHHHHHHHHh
Confidence            45788999999999999999999999999999998764 5554445554321      235555555554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK06382 threonine dehydratase; Provisional

Probab=90.64  E-value=1.3  Score=44.86  Aligned_cols=64  Identities=25%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee----c-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST----I-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T----~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.+.|.-+|+||-|.+|++.|.++|+||.+.....    . .+.+.-+|.|...     ++++.++|.+.|.+
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            578999999999999999999999999998876541    1 2334455655333     12444566666554

>TIGR00657 asp_kinases aspartate kinase

Probab=90.33  E-value=8  Score=39.52  Aligned_cols=101  Identities=13%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             CEEEEEEEeCC-C-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 017268          183 DYTVITMRSKD-R-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--  258 (374)
Q Consensus       183 ~~t~v~V~~~D-r-pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--  258 (374)
                      +...|+|.+.+ . +|+++++..+|+++|++|......+..  ..-.|.|...         ..++..+.|.......  
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKE---------DADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence            45667776543 3 799999999999999999766533322  1123555442         1222222232211111  


Q ss_pred             -----cCCceEEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 017268          259 -----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE  294 (374)
Q Consensus       259 -----~~~~tvieV~~---~DRpGLL~~It~~L~~~~i~I~~a~  294 (374)
                           ...-..|.|.+   .++||++++|.++|++.||+|....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 12246788865   4889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.99  E-value=1.2  Score=44.26  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  308 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv  308 (374)
                      .+.+.|.-+||||-|.+|+..|.+.||||.+.+|.-..+...-+..+
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            48999999999999999999999999999999996544444334444

>PRK12483 threonine dehydratase; Reviewed

Probab=89.94  E-value=13  Score=38.91  Aligned_cols=135  Identities=12%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHH-HHHHHHHHHH-----
Q 017268          181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER-ERVIQCLEAA-----  254 (374)
Q Consensus       181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~-~~L~~~L~~~-----  254 (374)
                      ......+.|.-+||||-|.+++.++...  ||....-......-..++....-.+     .+.. ++|.+.|.+.     
T Consensus       342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~  414 (521)
T PRK12483        342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVL  414 (521)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeE
Confidence            3456778999999999999999999988  8876655543322222332222111     1233 6677776542     


Q ss_pred             -H--------------hhccC---CceEEEEEeCCCccHHHHHHHHHHh-CCceEEEEEEeecCCeeeeEEEEEcCCCCC
Q 017268          255 -I--------------ERRAS---EGLELELCTEDRVGLLSDITRIFRE-NSLSIKRAEISTIGGKVKDTFYVTDVTGNP  315 (374)
Q Consensus       255 -L--------------~~r~~---~~tvieV~~~DRpGLL~~It~~L~~-~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~  315 (374)
                       +              .++.+   +.-++.|.-|.|||-|.++++.|.. ++|.-.+=+-  .|.....+|.     |-.
T Consensus       415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~v-----gi~  487 (521)
T PRK12483        415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLA-----GLQ  487 (521)
T ss_pred             ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEE-----EEe
Confidence             0              01222   3468999999999999999999996 3555544332  3555555653     222


Q ss_pred             CChhHHHHHHHHHh
Q 017268          316 VDPKIIDSIRRQIG  329 (374)
Q Consensus       316 l~~~~~~~l~~~l~  329 (374)
                      +.++..+++.+.|.
T Consensus       488 ~~~~~~~~~~~~l~  501 (521)
T PRK12483        488 VPEDERAALDAALA  501 (521)
T ss_pred             eChhHHHHHHHHHH
Confidence            22234455555554

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=89.87  E-value=0.85  Score=34.78  Aligned_cols=69  Identities=23%  Similarity=0.330  Sum_probs=46.9

Q ss_pred             EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCe-eEE-EEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268           52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDR-AAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  122 (374)
Q Consensus        52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~-~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  122 (374)
                      |.++++-||-.|++++-+|..+|.-|.+|.|--.  ++. .+. -|.+.+  .+..+........+...+.+.|.
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~lm   75 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTLM   75 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999653  332 222 344444  23334433344566666666554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=89.72  E-value=0.65  Score=43.51  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ--EFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~d--vF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      .-++.+...|.||++.+|+++|+..|+||.+.-+.-....++-  +..+...+       .-.++.++.|++.
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl  142 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL  142 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence            3458999999999999999999999999998887654444433  34444432       2455555555543

>PRK09181 aspartate kinase; Validated

Probab=89.71  E-value=7.1  Score=40.45  Aligned_cols=130  Identities=15%  Similarity=0.117  Sum_probs=80.2

Q ss_pred             CEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268          183 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R  258 (374)
Q Consensus       183 ~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r  258 (374)
                      +.+.|+|.+.   +.+|+++++..+|+++|++|.  .+.+..  ..-.|.|...       ...++++.+.|...+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence            5667777543   789999999999999999997  233322  2224555432       12344555555543321 1


Q ss_pred             --cCCceEEEEEeCC--CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          259 --ASEGLELELCTED--RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       259 --~~~~tvieV~~~D--RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                        ...-.+|.|.+..  +||+..++..+|++.||||....-.+  ....-.|.|...+.    .+.+..|-++|.
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~--se~~Is~vV~~~d~----~~Av~~lH~~f~  465 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM--RQVNMQFVVDEDDY----EKAICALHEALV  465 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC--CcceEEEEEeHHHH----HHHHHHHHHHHh
Confidence              2334678887764  89999999999999999998765332  12233455533211    124455555554

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.26  E-value=1.7  Score=31.98  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CEEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEE
Q 017268          183 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGM  216 (374)
Q Consensus       183 ~~t~v~V~~~----DrpGLl~~i~~~l~~~glnI~~A~  216 (374)
                      +...|+|.++    |.||++++++..|++.|+||....
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            4567888877    799999999999999999998666

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.84  E-value=2.3  Score=45.84  Aligned_cols=65  Identities=23%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLE  252 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g-~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~  252 (374)
                      .-.+.|.|.+.||+|+|++|+.+++..+.||......+.++ .+.-.|.+.-.+      -..+..|-..|.
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n------~~~L~~i~~~l~  690 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN------LNHLGRVLARLK  690 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc------HHHHHHHHHHHh
Confidence            35568899999999999999999999999999999988644 444334444321      235555555543

>PLN02317 arogenate dehydratase

Probab=88.82  E-value=1.8  Score=43.45  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=41.9

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe---------------eeeEEEEEcCCCCCC
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK---------------VKDTFYVTDVTGNPV  316 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~---------------~~D~Fyv~d~~g~~l  316 (374)
                      |.|-+.-.|+||.|+++..+|+.+|||+.+..-.-...+               -.=.||| |.+|..-
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~  351 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMA  351 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcC
Confidence            667777789999999999999999999999987765444               2348888 5456543

>PRK09034 aspartate kinase; Reviewed

Probab=88.76  E-value=31  Score=35.48  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             CeEEEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 017268           48 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  124 (374)
Q Consensus        48 ~~~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  124 (374)
                      +...|++.+   .+.+|.+++|..+|+.+|+||.--   + .+.....|.|...   . + +...+..+...|...+   
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~---~-~-~~a~~~~l~~el~~~~---  374 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRER---Q-L-TPKKEDEILAEIKQEL---  374 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHH---H-h-hHHHHHHHHHHHHHhh---
Confidence            345566653   668899999999999999999864   2 2233456777541   1 1 0000012222222111   


Q ss_pred             CcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHHH
Q 017268          125 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDI  201 (374)
Q Consensus       125 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~i  201 (374)
                       .       .                                      ..|.+   ..+...|.+.+   .+.||+++++
T Consensus       375 -~-------~--------------------------------------~~I~~---~~~va~VsivG~g~~~~~gv~ari  405 (454)
T PRK09034        375 -N-------P--------------------------------------DELEI---EHDLAIIMVVGEGMRQTVGVAAKI  405 (454)
T ss_pred             -C-------C--------------------------------------ceEEE---eCCEEEEEEECCCCCCCccHHHHH
Confidence             0       0                                      01122   22456677755   4789999999


Q ss_pred             HHHHHhCCceEEEEEEEe
Q 017268          202 VCTLTDMQYVVFHGMVNT  219 (374)
Q Consensus       202 ~~~l~~~glnI~~A~i~T  219 (374)
                      ..+|+++|+||......+
T Consensus       406 f~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        406 TKALAEANINIQMINQGS  423 (454)
T ss_pred             HHHHHHCCCCEEEEEecC
Confidence            999999999998665434

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.66  E-value=1.9  Score=46.47  Aligned_cols=50  Identities=28%  Similarity=0.387  Sum_probs=40.9

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEE-EEEEe
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA-VVHVT   96 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~d-vf~V~   96 (374)
                      .-...|.|.+.||+|||++|+.+|+..+.||.+....+.++++.. .|.+.
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~  675 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE  675 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence            345679999999999999999999999999999998887555553 44443

>PLN02551 aspartokinase

Probab=88.61  E-value=15  Score=38.67  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH---HH
Q 017268          182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---AI  255 (374)
Q Consensus       182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~---~L  255 (374)
                      .+.+.|+|.+.   +.+|.++++...|+++|++|.-..  +..  ..-.|.+...+-.      ..+.+++.+..   .|
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLW------SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence            35667788655   689999999999999999998662  222  2224556543211      11122222221   22


Q ss_pred             hh--cc---CCceEEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHH
Q 017268          256 ER--RA---SEGLELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQI  328 (374)
Q Consensus       256 ~~--r~---~~~tvieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l  328 (374)
                      ..  ..   ..-.+|.|.+.  .+||++.++..+|++.||||......+  ....-.|.|.+.+.    ++.+..|.++|
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~~d~----~~Av~aLH~~F  507 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVNDDEA----EQCVRALHSAF  507 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeHHHH----HHHHHHHHHHH
Confidence            21  11   23456777654  689999999999999999998876443  22333455543311    13455666666


Q ss_pred             h
Q 017268          329 G  329 (374)
Q Consensus       329 ~  329 (374)
                      .
T Consensus       508 f  508 (521)
T PLN02551        508 F  508 (521)
T ss_pred             h
Confidence            4

>PRK06382 threonine dehydratase; Provisional

Probab=88.53  E-value=3.1  Score=42.05  Aligned_cols=52  Identities=17%  Similarity=0.188  Sum_probs=40.2

Q ss_pred             CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEEe
Q 017268          181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-----GRTEAYQEFYIRH  232 (374)
Q Consensus       181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-----~~g~~~dvF~V~~  232 (374)
                      ....+.+.|..+|+||-|.+++.++.++|+||.+.....     ..+...-+|.|..
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet  383 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV  383 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe
Confidence            456788999999999999999999999999998776541     1345555565654

>PRK14646 hypothetical protein; Provisional

Probab=88.39  E-value=6.3  Score=34.52  Aligned_cols=94  Identities=13%  Similarity=0.082  Sum_probs=64.5

Q ss_pred             chHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeCCCc
Q 017268          196 KLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTEDRV  273 (374)
Q Consensus       196 GLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~--r~~~~tvieV~~~DRp  273 (374)
                      -+...+..++..+|+.+.+......++..+-..+|..++|..++- +.++.+-+.+...|+.  ..+..|.+||++|.=-
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld   86 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGVS   86 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence            456677889999999999999998776544456666554444443 4778888888888863  3567899999987333


Q ss_pred             cHHHHHHHHHHhCCceE
Q 017268          274 GLLSDITRIFRENSLSI  290 (374)
Q Consensus       274 GLL~~It~~L~~~~i~I  290 (374)
                      --|..--.+-.-.|=.|
T Consensus        87 RpL~~~~df~r~~G~~v  103 (155)
T PRK14646         87 DELTSERDFKTFKGFPV  103 (155)
T ss_pred             CcCCCHHHHHHhCCCEE
Confidence            33555555555555443

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.39  E-value=2  Score=43.84  Aligned_cols=65  Identities=28%  Similarity=0.349  Sum_probs=47.8

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|.+...|+||.|.+|+.+|.++|++|.+..-....+....++++++..    +...++++.++|..
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            478999999999999999999999999999887654333456677777642    23445555555554

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=88.26  E-value=2.8  Score=31.64  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~  232 (374)
                      +.+..+|+||-|+++...|+.+|+|+..-...-.. +...-.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            44555899999999999999999999877665533 33344566654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.91  E-value=4.4  Score=31.38  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .+.|.-+|+||=|++++.+|+  +.||.+..-.... +.....+.+.-  .+.    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~--~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV--ANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe--CCc----HHHHHHHHHHHHH
Confidence            477889999999999999999  7777754443332 22222333322  110    2455677777766

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=87.85  E-value=4.9  Score=30.52  Aligned_cols=61  Identities=10%  Similarity=0.267  Sum_probs=38.7

Q ss_pred             EEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHH-HHHHHHhh
Q 017268          264 ELELC---TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIID-SIRRQIGH  330 (374)
Q Consensus       264 vieV~---~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~-~l~~~l~~  330 (374)
                      .|+|.   .+++||++++|..+|+++||+|...-  | ++ ..=.|-|...  .+..++.+. +|...|..
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence            45553   57899999999999999999999884  2 22 3344555432  222123333 56666554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=87.59  E-value=33  Score=34.49  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=26.8

Q ss_pred             CCeEEEEEEeCCc-cchHHHHHHHHHhcCCeEEEE
Q 017268           47 EEHTSIEFTGTDR-PGLFSEVCAVLADLHCNVVNA   80 (374)
Q Consensus        47 ~~~~~I~I~~~Dr-pGL~a~I~~vL~~~glnI~~A   80 (374)
                      .+...|+|...+. +|.+++|..+|+.+|+||.--
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i  303 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI  303 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE
Confidence            3445566665454 999999999999999999866

>PRK14636 hypothetical protein; Provisional

Probab=87.43  E-value=6.4  Score=35.26  Aligned_cols=91  Identities=11%  Similarity=0.081  Sum_probs=61.9

Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC-
Q 017268          194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE-  270 (374)
Q Consensus       194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~-  270 (374)
                      .+-+...+..++..+|+.+.+..+...++..+-..+|..+++..++- +.++++-+.|...|+..  .+..|.+||+++ 
T Consensus         4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG   82 (176)
T PRK14636          4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSPG   82 (176)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence            34466677888999999999999988765544455565554333443 47888888888888642  467899999987 


Q ss_pred             -CCccHHHHHHHHHHhCC
Q 017268          271 -DRVGLLSDITRIFRENS  287 (374)
Q Consensus       271 -DRpGLL~~It~~L~~~~  287 (374)
                       |||  |..--..-.-.|
T Consensus        83 ldRp--L~~~~df~r~~G   98 (176)
T PRK14636         83 IDRP--LTRPKDFADWAG   98 (176)
T ss_pred             CCCC--CCCHHHHHHhCC
Confidence             665  333334433333

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=87.30  E-value=3.7  Score=31.20  Aligned_cols=57  Identities=21%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .++.||++++|.++|+++||+|...-  + ++ ..=.|-|.... .-+.++.+++|.++|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence            45889999999999999999999884  2 23 33344443332 11333466677777665

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK14634 hypothetical protein; Provisional

Probab=87.09  E-value=8.1  Score=33.81  Aligned_cols=90  Identities=19%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--
Q 017268          195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--  270 (374)
Q Consensus       195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--  270 (374)
                      .-+-..+..++..+|+.+.+..+...++..+-..+|..+.|..++- +.++.+-+.+...|+..  .+..|.+||+++  
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl   85 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPGI   85 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence            3455667788999999999999988765444455666666643443 47888888888888643  466899999987  


Q ss_pred             CCccHHHHHHHHHHhCC
Q 017268          271 DRVGLLSDITRIFRENS  287 (374)
Q Consensus       271 DRpGLL~~It~~L~~~~  287 (374)
                      |||  |..--..-.-.|
T Consensus        86 dRp--L~~~~~f~r~~G  100 (155)
T PRK14634         86 GDQ--LSSDRDFQTFRG  100 (155)
T ss_pred             CCc--CCCHHHHHHhCC
Confidence            665  444444444444

>PRK09224 threonine dehydratase; Reviewed

Probab=86.54  E-value=32  Score=35.94  Aligned_cols=108  Identities=13%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I  255 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~------L  255 (374)
                      .....+.|.-|||||-|.+++.+|.  +.||...+-.-.+..-..+|....-.+.    +...++|.+.|++.      +
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            4566789999999999999999999  6888776554333222333332221111    11266777777543      1


Q ss_pred             --------------hhccC---CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268          256 --------------ERRAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS  296 (374)
Q Consensus       256 --------------~~r~~---~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~  296 (374)
                                    .++.+   ..-.+.|.=+.|||-|.++...|. -+-||...+=.
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence                          01121   235889999999999999999777 67788887764

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=86.43  E-value=4.6  Score=30.71  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=35.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~  232 (374)
                      +.+..+|+||-|+++...|+.+|+|+..-..... +....-.|+|.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4455589999999999999999999987777654 333444577765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.39  E-value=1.8  Score=45.32  Aligned_cols=61  Identities=21%  Similarity=0.462  Sum_probs=45.1

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  326 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~  326 (374)
                      .+.+-+.-.|+||.+..|+..|.+.+|||...++.-.  |+.+.-++-+    ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            4566667799999999999999999999999988653  3455544544    34555566666664

>PRK11899 prephenate dehydratase; Provisional

Probab=86.32  E-value=3.6  Score=39.55  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=39.1

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH  232 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~  232 (374)
                      .|.+.+..+|+||.|+++..+|+.+|+|+..-...-. ++...=.|+|.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            5667777799999999999999999999998777654 444455677765

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.10  E-value=4.7  Score=40.26  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee-----cCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-----IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T-----~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ...+.|.-+||||.|.++++.+++.|.||....-.-     ..+.+.=.+.+... +    +++.++|.+.|.+
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-~----~~~~~~i~~~L~~  373 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-G----KEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-C----HHHHHHHHHHHHH
Confidence            458999999999999999999999999998875431     12344444544332 1    3556677776654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK14645 hypothetical protein; Provisional

Probab=85.95  E-value=10  Score=33.13  Aligned_cols=91  Identities=22%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC-
Q 017268          194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE-  270 (374)
Q Consensus       194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~-  270 (374)
                      ..-+-..+..++..+|+.+.+..+...++..+-..+|..++|..+.- +.++.+-+.+...|+..  .+..|.+||+++ 
T Consensus         8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   86 (154)
T PRK14645          8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG   86 (154)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence            34466777889999999999999988765444345565444444443 47888888888888643  456899999987 


Q ss_pred             -CCccHHHHHHHHHHhCC
Q 017268          271 -DRVGLLSDITRIFRENS  287 (374)
Q Consensus       271 -DRpGLL~~It~~L~~~~  287 (374)
                       |||  |...-....-.|
T Consensus        87 ldRp--L~~~~df~r~~G  102 (154)
T PRK14645         87 PKRP--LFTARHFERFAG  102 (154)
T ss_pred             CCCC--CCCHHHHHHhCC
Confidence             555  555555555555

>PLN02550 threonine dehydratase

Probab=85.52  E-value=29  Score=36.98  Aligned_cols=134  Identities=15%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I  255 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~------L  255 (374)
                      ....+.|.-+||||-|.+++.++...  ||.+..-.-. .+.+.-.+-|...      .++..++|.+.|.+.      |
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~------~~~~~~~i~~~l~~~g~~~~~l  487 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH------TEQELQALKKRMESAQLRTVNL  487 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC------CHHHHHHHHHHHHHCCCCeEeC
Confidence            44668899999999999999999986  7776554432 2332222223222      235677777777653      1


Q ss_pred             h--------------hc--cCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChh
Q 017268          256 E--------------RR--ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPK  319 (374)
Q Consensus       256 ~--------------~r--~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~  319 (374)
                      .              +|  ..+.-++.|.-+.|||-|.+++++|... -||...+=...|+....+|.     |-.+.++
T Consensus       488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vlv-----Gi~v~~~  561 (591)
T PLN02550        488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVLV-----GIQVPPE  561 (591)
T ss_pred             CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEEE-----EEeeCHH
Confidence            0              01  1123578999999999999999988862 34444443334544444552     2222234


Q ss_pred             HHHHHHHHHhh
Q 017268          320 IIDSIRRQIGH  330 (374)
Q Consensus       320 ~~~~l~~~l~~  330 (374)
                      ..+.+.+.|..
T Consensus       562 e~~~l~~~l~~  572 (591)
T PLN02550        562 EMQEFKSRANA  572 (591)
T ss_pred             HHHHHHHHHHH
Confidence            55666665543

>PRK06545 prephenate dehydrogenase; Validated

Probab=84.92  E-value=1.7  Score=43.17  Aligned_cols=41  Identities=10%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT  222 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g  222 (374)
                      ..++.|.|..+|+||-+++++..|...|+||.+.+|.-..+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~  328 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE  328 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence            35788999999999999999999999999999999965433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=84.69  E-value=3.3  Score=36.48  Aligned_cols=66  Identities=15%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  256 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~  256 (374)
                      -.+.+...|.||.|.++++.|+..|+||.+-.+.- ......-+-.|...+      +...+++...|....+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~------~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGD------EQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCC------cchHHHHHHHHHhhcc
Confidence            35788899999999999999999999999998864 333332222233221      2366777777776653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=84.66  E-value=2  Score=45.03  Aligned_cols=61  Identities=16%  Similarity=0.415  Sum_probs=45.3

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  326 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~  326 (374)
                      .+.+-+.-.|+||.+..|+..|.+++|||...++.-.  |+.+.-++.+    ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            4566667799999999999999999999999887644  4555545544    23555667777764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=84.64  E-value=3.6  Score=36.12  Aligned_cols=61  Identities=13%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             eEEEEEe--CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHH
Q 017268          263 LELELCT--EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIR  325 (374)
Q Consensus       263 tvieV~~--~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~  325 (374)
                      -+|++..  .+.||+|+.++..++++||+|..+...--.-...-..||-.  -.|+..+.+.+|+
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVt--e~~iP~~li~el~  156 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVT--ERPIPGDLIDELK  156 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEE--eccCCHHHHHHHh
Confidence            3666655  67899999999999999999999875432122223333322  2455555555554

>PRK14630 hypothetical protein; Provisional

Probab=84.49  E-value=11  Score=32.62  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=60.8

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC--
Q 017268          193 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE--  270 (374)
Q Consensus       193 DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvieV~~~--  270 (374)
                      |..-+-..+..++..+|+.+.+......++...-..+|..+.|  ++- +.++.+-+.+...|+...+..|.+||++|  
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl   82 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI   82 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence            4445667788899999999999998876654444555665555  332 46788888887777654567899999987  


Q ss_pred             CCccHHHHHHHHHHhCC
Q 017268          271 DRVGLLSDITRIFRENS  287 (374)
Q Consensus       271 DRpGLL~~It~~L~~~~  287 (374)
                      |||  |...-..-.-.|
T Consensus        83 dRp--L~~~~df~r~~G   97 (143)
T PRK14630         83 NRK--IKSDREFKIFEG   97 (143)
T ss_pred             CCc--CCCHHHHHHhCC
Confidence            555  444444444333

>PRK08198 threonine dehydratase; Provisional

Probab=84.13  E-value=8.3  Score=38.85  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=35.0

Q ss_pred             CCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe
Q 017268           45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT   84 (374)
Q Consensus        45 ~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T   84 (374)
                      ..+....+.|.-+|+||-|+++..+++.+|.||.+-...-
T Consensus       323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            3556678999999999999999999999999999887653

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=84.04  E-value=7.9  Score=27.59  Aligned_cols=52  Identities=23%  Similarity=0.380  Sum_probs=35.4

Q ss_pred             eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHH
Q 017268          269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQI  328 (374)
Q Consensus       269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l  328 (374)
                      ..++||+.++|.++|++.|+++....  | ++ ..=.|++.....    ++.++.|.++|
T Consensus        10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~~----~~~~~~l~~~l   61 (62)
T cd04890          10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSLL----PKKLKRLLAEL   61 (62)
T ss_pred             cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhhh----hHHHHHHHHhh
Confidence            34789999999999999999999883  3 23 445677754321    23455555544

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=84.03  E-value=73  Score=35.46  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=72.5

Q ss_pred             CCCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           45 PTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        45 ~~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      ...+...|+|.+.   ++||+++++..+|+.+|+||.-....+  ......|.|..          +..++..+.|.+.+
T Consensus       311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f  378 (819)
T PRK09436        311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEF  378 (819)
T ss_pred             EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHH
Confidence            3456677888765   578999999999999999997443322  22334566643          11223333344433


Q ss_pred             cCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchH
Q 017268          122 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLL  198 (374)
Q Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl  198 (374)
                      ..+..       .         .+          .                ..|.+   ..+...|.+.+.   ++||+.
T Consensus       379 ~~el~-------~---------~~----------~----------------~~i~~---~~~valIsvvG~gm~~~~gv~  413 (819)
T PRK09436        379 ALELK-------E---------GL----------L----------------EPLEV---EENLAIISVVGDGMRTHPGIA  413 (819)
T ss_pred             HHHhc-------c---------CC----------c----------------ceEEE---eCCEEEEEEEccCcccCcCHH
Confidence            21110       0         00          0                11222   235666777775   789999


Q ss_pred             HHHHHHHHhCCceEEEEEEEe
Q 017268          199 FDIVCTLTDMQYVVFHGMVNT  219 (374)
Q Consensus       199 ~~i~~~l~~~glnI~~A~i~T  219 (374)
                      +++..+|.+.|+||......+
T Consensus       414 arif~aL~~~~InI~~Isqgs  434 (819)
T PRK09436        414 AKFFSALGRANINIVAIAQGS  434 (819)
T ss_pred             HHHHHHHHHCCCCEEEEEecc
Confidence            999999999999998654433

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=83.82  E-value=4.9  Score=38.61  Aligned_cols=50  Identities=10%  Similarity=0.082  Sum_probs=40.2

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH  232 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~  232 (374)
                      ..|.+-+..+|+||-|+++.+.|+.+|+|...-...-. ++-..-.|+|.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            37788888899999999999999999999987776644 445555677765

>PRK08198 threonine dehydratase; Provisional

Probab=83.78  E-value=9.6  Score=38.40  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN  218 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~  218 (374)
                      .....+.|.-+|+||-|.+++.+++++|.||.+....
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            3456799999999999999999999999999987765

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=83.70  E-value=4.4  Score=35.72  Aligned_cols=66  Identities=15%  Similarity=0.252  Sum_probs=46.5

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEE-EEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVL  121 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~~L  121 (374)
                      ...+.+.-.|.||-|+++++.|+..|+||.+-.+.-++..-.. +-.|+.   |.    +...+.+.+.|.+.+
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhc
Confidence            4568888999999999999999999999999888776543333 333333   21    234566666666643

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=83.18  E-value=17  Score=37.34  Aligned_cols=118  Identities=10%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-h
Q 017268          182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-R  257 (374)
Q Consensus       182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~-~  257 (374)
                      .+.+.|+|...   ..+|.++++..+|+++|+|+..-........  -.|.+...+.     +.....|.+.....+. -
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~~v  377 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLAEV  377 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcceE
Confidence            45677777653   3459999999999999999975433322222  4466654321     1122333333322221 0


Q ss_pred             ccC-CceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268          258 RAS-EGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  310 (374)
Q Consensus       258 r~~-~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d  310 (374)
                      ... .-.+|.+.+.   ..||+.+++.++|++.||||....    -....-.|.|..
T Consensus       378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~  430 (447)
T COG0527         378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE  430 (447)
T ss_pred             EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence            011 1245666554   779999999999999999999877    233455666633

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=83.14  E-value=14  Score=26.72  Aligned_cols=42  Identities=12%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268           51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT   96 (374)
Q Consensus        51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~   96 (374)
                      .|.+++.   +.||+++++..+|...|++|.  .+.|  ......|.|.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~--Se~~is~~v~   47 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD--SHTTISCLVS   47 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc--CccEEEEEEc
Confidence            5777775   789999999999999999996  3333  2333445553

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK09084 aspartate kinase III; Validated

Probab=82.40  E-value=17  Score=37.34  Aligned_cols=99  Identities=11%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268          182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  257 (374)
Q Consensus       182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-  257 (374)
                      .+...|+|.+.   +.+|.++++..+|+++|+||.--..  . + .--.|.|...+-..    .....+.+.+...|.. 
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--s-e-~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~~  375 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--S-E-VSVSLTLDTTGSTS----TGDTLLTQALLTELSQL  375 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--c-C-cEEEEEEechhhhh----hhhHHHHHHHHHHHhcC
Confidence            35667888654   6899999999999999999986642  2 2 22346665532110    0111222222222321 


Q ss_pred             -c--c-CCceEEEEEeC---CCccHHHHHHHHHHhCCc
Q 017268          258 -R--A-SEGLELELCTE---DRVGLLSDITRIFRENSL  288 (374)
Q Consensus       258 -r--~-~~~tvieV~~~---DRpGLL~~It~~L~~~~i  288 (374)
                       +  . +.-.+|.|.+.   ++||++.++..+|++.++
T Consensus       376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence             1  1 23467888886   799999999999987433

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=82.21  E-value=12  Score=37.38  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN  218 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~  218 (374)
                      ....+.|..+|+||.|++++..++++|.||.+-.-.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            445789999999999999999999999999877543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=82.08  E-value=6.6  Score=40.04  Aligned_cols=54  Identities=19%  Similarity=0.271  Sum_probs=42.2

Q ss_pred             cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268           44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD   97 (374)
Q Consensus        44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~   97 (374)
                      +.....+-|.+...|+||.|++|+++|..+|+||.+-......+....++.+++
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            444556789999999999999999999999999997766554444455666765

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=82.02  E-value=2.6  Score=43.14  Aligned_cols=53  Identities=19%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeee--EEEEEcCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD--TFYVTDVTGNP  315 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D--~Fyv~d~~g~~  315 (374)
                      .+.|-+...|+||-|+++-+.|+.+|||+.+....-......+  .|||.- +|..
T Consensus        31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~-Eg~~   85 (464)
T TIGR01270        31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV-ELFH   85 (464)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE-EcCH
Confidence            3566677799999999999999999999999988776555444  788844 4554

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=81.91  E-value=3.9  Score=33.97  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=36.4

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH  232 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~  232 (374)
                      .+.+.+..+|+||-|+++...|+.+|+|+..-...... ....-.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            45666677999999999999999999999877766542 22233466654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=81.35  E-value=6.1  Score=38.05  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=39.4

Q ss_pred             eEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268          263 LELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP  315 (374)
Q Consensus       263 tvieV~~~-DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~  315 (374)
                      +.|-+... |+||.|+++...|+++|||+.+....-..++ -.=.||| |.+|..
T Consensus       197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~  250 (283)
T PRK11898        197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI  250 (283)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC
Confidence            45555554 4699999999999999999999988765444 4457888 555765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=80.65  E-value=4.3  Score=40.69  Aligned_cols=50  Identities=12%  Similarity=0.087  Sum_probs=37.2

Q ss_pred             CEEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268          183 DYTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  233 (374)
Q Consensus       183 ~~t~v~V~~~-DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~  233 (374)
                      ..+.+.+..+ |+||.|++++.+|+.+|+||.+-.+.-...+-.- |+|.-.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence            3566777776 9999999999999999999999888332222222 776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1u8s_A	192	Glycine cleavage system transcriptional repressor,	9e-06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	4e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	6e-04
2nyi_A	195	Unknown protein; protein structure initiative, PSI	7e-04
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 4e-12
 Identities = 62/369 (16%), Positives = 114/369 (30%), Gaps = 117/369 (31%)

Query: 2   DVFNVIDCDGKKI----RDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGT 57
           + FN + C   KI    R K+V D++     T                + +H S+  T  
Sbjct: 260 NAFN-LSC---KILLTTRFKQVTDFLSAATTTH--------------ISLDHHSMTLTPD 301

Query: 58  DRPGLFS------------EVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
           +   L              EV         +++   I           HV          
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNC-------- 352

Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLS--------PPGIMNRERRLHQIMFDDRDYE 157
              +L+TI E   NVL    ++RK    LS        P  ++        +++ D    
Sbjct: 353 --DKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILL-------SLIWFDVIKS 402

Query: 158 RVEKAVGRVEDKS---SRPQVTVLNIEKDYTVITMRSKDRPKL---------------LF 199
            V   V ++   S    +P+ + ++I   Y  + ++ ++   L                 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 200 DIVCTLTDM---QYVVFHGMVNTGRTEAYQEF---Y---------IRHVDGLPISSEAER 244
           D++    D     ++  H + N    E    F   +         IRH D    ++    
Sbjct: 463 DLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSI 520

Query: 245 ERVIQCL----------EAAIERRASEGLE-LELCTED----------RVGLLSDITRIF 283
              +Q L          +   ER  +  L+ L    E+          R+ L+++   IF
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Query: 284 RENSLSIKR 292
            E    ++R
Sbjct: 581 EEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 40/299 (13%), Positives = 89/299 (29%), Gaps = 70/299 (23%)

Query: 113 IKELLFNVL--RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK- 169
           ++++  ++L     D        +     ++   RL   +   ++ E V+K V  V    
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRIN 90

Query: 170 --------SSRPQVTVLNIEK----------DYTVITMRSKDRPKLLFDI---VCTLTDM 208
                    +  +   +              D  V    +  R +    +   +  L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 209 QYVVFHGMVNTGRT----EAYQEFYIRHVDGLPI--------SSEAERERVIQCLEAAIE 256
           + V+  G++ +G+T    +    + ++      I        +S      ++Q L   I+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 257 RRASEGLELELCTEDRVGLLSD-ITRIFRE----NSLSIKRAEISTIGGKVKDTF----- 306
              +   +     + R+  +   + R+ +     N L +    +     K  + F     
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN--AKAWNAFNLSCK 267

Query: 307 --------YVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR--STILAPKP---PKETTTG 352
                    VTD          I      +  T  +VK      L  +P   P+E  T 
Sbjct: 268 ILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 45.1 bits (106), Expect = 9e-06
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
          M   +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 1  MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 50  TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
             I   G D+ G+ +++  V++    N+    +   +      + +        +K+  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 110 LSTI 113
           L+T+
Sbjct: 59  LTTL 62

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDS 323
            + +  ED+ G+ + IT +  +   +I+   ++   G       +  V        ++D 
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI-FVKNTDKLTTLMDK 65

Query: 324 IRR 326
           +R+
Sbjct: 66  LRK 68

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 52  IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 111
           +   G+DR G+  +    L ++  NV ++ +       A +V V+ ++    +      S
Sbjct: 8   VSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALES 67

Query: 112 TIKELLFNVLRGY 124
            +     +  R  
Sbjct: 68  ALPGFQISTRRAS 80

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Length = 91

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 95
          I   G D+ G+ + V   +A+L  N+ +      ++    +  V
Sbjct: 8  ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.79
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.75
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.67
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.94
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.85
2f06_A	144	Conserved hypothetical protein; structural genomic	98.76
2f06_A	144	Conserved hypothetical protein; structural genomic	98.28
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.21
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.19
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.0
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.77
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.74
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.73
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.7
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.58
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.52
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.5
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.49
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.39
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.35
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.32
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.31
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.25
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.22
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.08
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.06
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.03
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.85
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.84
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.8
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.72
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.69
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.66
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.57
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.55
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.44
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.19
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.93
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.72
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.67
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.49
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.31
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.1
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.04
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.09
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.98
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.58
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	93.02
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.88
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.72
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	92.66
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.41
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.92
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	91.28
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	91.26
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.95
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	89.33
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	85.72
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.88
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	83.29
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	81.37
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	80.74

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.79  E-value=6.1e-19  Score=159.05  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=115.0

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc----
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR----  258 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r----  258 (374)
                      ..++|+|+|+|||||++.|+++|+++|+||.++++++..|.+.-.|.|..+..   ....+++.|++.|...+...    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            35789999999999999999999999999999999998776665888876532   22336777777776543210    


Q ss_pred             -c--------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHH
Q 017268          259 -A--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQ  327 (374)
Q Consensus       259 -~--------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~  327 (374)
                       .        ...++|+|.|+|||||+++|+++|+++|+||..++..|.+  ++..+.||++...+.| .+.. ++|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence             1        1258999999999999999999999999999999999998  7789999998876554 2345 778887


Q ss_pred             Hhh
Q 017268          328 IGH  330 (374)
Q Consensus       328 l~~  330 (374)
                      |..
T Consensus       159 l~~  161 (195)
T 2nyi_A          159 LSR  161 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.75  E-value=4e-17  Score=146.49  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=111.1

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh------
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER------  257 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~------  257 (374)
                      ..+|+|+|+||||++++++++|+++|+||.++++++.+|.+.-.|.|..+.       ..+++|++.|...+..      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEEE
Confidence            578999999999999999999999999999999999888777788887541       3677888888765421      


Q ss_pred             --ccC--------CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC----eeeeEEEEEcCCCCCCChhHHHH
Q 017268          258 --RAS--------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG----KVKDTFYVTDVTGNPVDPKIIDS  323 (374)
Q Consensus       258 --r~~--------~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~----~~~D~Fyv~d~~g~~l~~~~~~~  323 (374)
                        +.+        ..++|+|.++||||+|++|+++|+++|+||.+++..|.++    +..+.||++...+.| .+...++
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              111        2479999999999999999999999999999999999984    689999998865444 2335677


Q ss_pred             HHHHHhh
Q 017268          324 IRRQIGH  330 (374)
Q Consensus       324 l~~~l~~  330 (374)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777775

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=3.9e-17  Score=147.17  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCcc
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF  127 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  127 (374)
                      ..++|+|+|+||||||++|+++|+++|+||++|++++..+++...|.|..+  +.  ..+.+++.|++.|..++.+ .. 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~-~~-   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS-TR-   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE-EE-
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh-cC-
Confidence            467999999999999999999999999999999999999998888888653  22  2233566676666553322 11 


Q ss_pred             cccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHh
Q 017268          128 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD  207 (374)
Q Consensus       128 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~  207 (374)
                            +. +.       .+                    .   .+.    ......++|+|.|+|||||+++|+++|++
T Consensus        78 ------~~-~~-------~~--------------------~---~~~----~~~~~~~iltv~g~DrpGiva~Vt~~La~  116 (195)
T 2nyi_A           78 ------RA-SS-------VA--------------------E---RHV----SPDTREYELYVEGPDSEGIVEAVTAVLAK  116 (195)
T ss_dssp             ------EC-CC-------C---------------------------C----CTTEEEEEEEEEEECCTTHHHHHHHHHHH
T ss_pred             ------Ce-EE-------EE--------------------e---CCc----CCCCcEEEEEEEeCCCcCHHHHHHHHHHH
Confidence                  10 00       00                    0   000    11235688999999999999999999999


Q ss_pred             CCceEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          208 MQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       208 ~glnI~~A~i~T~~--g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      +|+||.+++..|.+  ++..+.|++....+.+  +... +.|++.|...
T Consensus       117 ~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A          117 KGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRV  162 (195)
T ss_dssp             TTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHH
T ss_pred             cCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHH
Confidence            99999999999976  3444566665433221  1224 6677766543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.67  E-value=1.2e-15  Score=136.90  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=109.8

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCc
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  126 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  126 (374)
                      .....|+|+|+||||++++|+++|+.+|+||+++++++..+.+...+.|..+        ...++.|++.|.+++ ++..
T Consensus         4 ~~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~-~~~~   74 (192)
T 1u8s_A            4 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLG-QQHD   74 (192)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHH-HHHT
T ss_pred             CcEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHH-HhcC
Confidence            3457899999999999999999999999999999999998888888888642        135678888888755 3222


Q ss_pred             ccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268          127 FRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTL  205 (374)
Q Consensus       127 ~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l  205 (374)
                             +.        .+.+.       ..             .++     + .....++|+|.|+||||++++|+++|
T Consensus        75 -------~~--------~~~~~-------~~-------------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l  114 (192)
T 1u8s_A           75 -------LI--------TMMKR-------TS-------------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFF  114 (192)
T ss_dssp             -------CE--------EEEEE-------EC-------------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHH
T ss_pred             -------CE--------EEEEe-------CC-------------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHH
Confidence                   10        00100       00             001     1 23456889999999999999999999


Q ss_pred             HhCCceEEEEEEEecCC----eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          206 TDMQYVVFHGMVNTGRT----EAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       206 ~~~glnI~~A~i~T~~g----~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      +++|+||.+++..|.+.    +..+.|++....+.+  +....+.|++.|..
T Consensus       115 ~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~  164 (192)
T 1u8s_A          115 AQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDA  164 (192)
T ss_dssp             HHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHH
T ss_pred             HHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence            99999999999999763    455666665432211  11134566666654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.94  E-value=4.2e-08  Score=97.34  Aligned_cols=122  Identities=11%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---Hh---
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IE---  256 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~---L~---  256 (374)
                      ...+|+|.|+|||||++.|+++|+++|+||.++..++.+|++.-...+..++..     ...+.|++.|...   +.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            457899999999999999999999999999999999988988766666543211     0125666666543   21   


Q ss_pred             --h------ccC--CceEEEEEeCC-CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017268          257 --R------RAS--EGLELELCTED-RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT  309 (374)
Q Consensus       257 --~------r~~--~~tvieV~~~D-RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~  309 (374)
                        .      +.+  .+..+++.+.| +||++.+|+.+|+++|+||..+..-+......-.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              0      011  25899999999 99999999999999999999988877433333346664

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.85  E-value=2.4e-08  Score=99.06  Aligned_cols=140  Identities=13%  Similarity=0.047  Sum_probs=96.4

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCcc
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF  127 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  127 (374)
                      ....|+|.|+||||+.+.|+++|+++|+||.+++.++.++.+.....+.-+  +..    ...+.|++.|.. +..+.. 
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~----~~~~~l~~~l~~-~~~~~~-   82 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADV----ADGPALRHDVEA-AIRKVG-   82 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHH----HTSHHHHHHHHH-HHHHTT-
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCc----CCHHHHHHHHHH-HHHHcC-
Confidence            467899999999999999999999999999999999988887766555431  110    012567887776 433332 


Q ss_pred             cccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCC-CcchHHHHHHHHH
Q 017268          128 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD-RPKLLFDIVCTLT  206 (374)
Q Consensus       128 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~D-rpGLl~~i~~~l~  206 (374)
                            +.        .+++.       ..             ..+.+    ....+..+++.++| ++|++.+++.+++
T Consensus        83 ------~~--------~~~~~-------~~-------------~~~~~----~~~~~~~~~llg~~~~~~~~~~i~~~l~  124 (415)
T 3p96_A           83 ------LD--------VSIER-------SD-------------DVPII----REPSTHTIFVLGRPITAAAFGAVAREVA  124 (415)
T ss_dssp             ------CE--------EEEEE-------CS-------------SSCSS----CCCCSEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             ------eE--------EEEEE-------CC-------------ccccc----CCCCcEEEEEEeCCCCHHHHHHHHHHHH
Confidence                  10        01110       00             00000    12356779999999 9999999999999


Q ss_pred             hCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268          207 DMQYVVFHGMVNTGRTEAYQEFYIRHV  233 (374)
Q Consensus       207 ~~glnI~~A~i~T~~g~~~dvF~V~~~  233 (374)
                      .+|+||.+....+....+.--|+|..+
T Consensus       125 ~~~~Ni~~l~~~~~~~~~~~~~~v~~~  151 (415)
T 3p96_A          125 ALGVNIDLIRGVSDYPVIGLELRVSVP  151 (415)
T ss_dssp             HTTCEEEEEEEEESSSSEEEEEEEECC
T ss_pred             HcCCCccceeeccCCCceEEEEEeeCC
Confidence            999999988887743333333666544

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.76  E-value=2.1e-07  Score=78.88  Aligned_cols=112  Identities=5%  Similarity=-0.000  Sum_probs=76.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE  264 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tv  264 (374)
                      ..++|..+|+||.++++++.|++.|+||....+....+...-.|.+.+        .   ++.++.|... ........+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d--------~---~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD--------P---DKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC--------H---HHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCC--------H---HHHHHHHHHc-CCeEeeeeE
Confidence            568889999999999999999999999998877643332222243221        2   2233334321 111111247


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268          265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  308 (374)
Q Consensus       265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv  308 (374)
                      +-+..+|+||.+++++++|++.|+||.+......+.+..-+|.+
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            88888999999999999999999999887765334555545544

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.28  E-value=4e-05  Score=64.67  Aligned_cols=113  Identities=16%  Similarity=0.103  Sum_probs=75.8

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccc
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  128 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  128 (374)
                      ...|+|..+|+||.+++|+++|+++|+||..-.+....+.-...|.+.         ++   ++.++.|.+  .|..   
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~--~G~~---   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKD--NHFA---   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHH--TTCC---
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHH--cCCe---
Confidence            357899999999999999999999999999877764433212223321         22   233444443  1210   


Q ss_pred             ccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHhC
Q 017268          129 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM  208 (374)
Q Consensus       129 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~~  208 (374)
                           .                     .                          ...++.+..+|+||.+++++++|+++
T Consensus        69 -----v---------------------~--------------------------~~svv~v~~~d~pGvla~i~~~L~~~   96 (144)
T 2f06_A           69 -----V---------------------N--------------------------ITDVVGISCPNVPGALAKVLGFLSAE   96 (144)
T ss_dssp             -----E---------------------E--------------------------EEEEEEEEEESSTTHHHHHHHHHHHT
T ss_pred             -----E---------------------e--------------------------eeeEEEEEeCCCCcHHHHHHHHHHHC
Confidence                 0                     0                          02346778899999999999999999


Q ss_pred             CceEEEEEEEecCCeEEEEEEE
Q 017268          209 QYVVFHGMVNTGRTEAYQEFYI  230 (374)
Q Consensus       209 glnI~~A~i~T~~g~~~dvF~V  230 (374)
                      |+||.....+..++...-+|.+
T Consensus        97 ~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           97 GVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             TCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEEccCCcEEEEEEe
Confidence            9999876665334455444444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.21  E-value=1.2e-05  Score=62.25  Aligned_cols=64  Identities=9%  Similarity=0.017  Sum_probs=50.8

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ...++|.++||||++++++++|+++|+||.+....+.++.+.-.+.+..++..      .++.|.+.|..
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~------~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC------CHHHHHHHHHH
Confidence            46799999999999999999999999999999999877877777777554311      34556666554

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.19  E-value=9.4e-06  Score=62.86  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....|+|.++||||++++|+++|+++|+||.+....+..+.+...+.+.-+  +.     ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence            457899999999999999999999999999999999887766666666432  21     124677777776

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.00  E-value=3.2e-05  Score=59.11  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.-.     +...++++.++|..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            36789999999999999999999999999999998876655555555332     23567777777764

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.77  E-value=0.00013  Score=55.73  Aligned_cols=48  Identities=13%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT   96 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~   96 (374)
                      .+.|.|.++||||++++|+++|+++|+||.+..+.+.++.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence            467899999999999999999999999999999988766444555554

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.74  E-value=0.00023  Score=61.69  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=77.0

Q ss_pred             CEEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 017268          183 DYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IER  257 (374)
Q Consensus       183 ~~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~---L~~  257 (374)
                      +...|+|. .+|+||.++++..+|+++|+||..-.... .+|...-.|.|...+         .++..+.|.+.   +..
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~---------~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGD---------YKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGG---------HHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechH---------HHHHHHHHHHHHHHcCC
Confidence            56778888 59999999999999999999998765542 234445557775421         12233334332   111


Q ss_pred             c----cCCceEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017268          258 R----ASEGLELELCTED---RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT  309 (374)
Q Consensus       258 r----~~~~tvieV~~~D---RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~  309 (374)
                      .    ...-..+.|.+.+   +||+++++.++|++.||||...  +|.  ...-.|.|.
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i--sts--e~~is~vv~  149 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI--STS--EIKVSVLID  149 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE--EEC--SSEEEEEEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE--Ecc--cCEEEEEEe
Confidence            0    1234789999887   9999999999999999999984  342  233445553

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.73  E-value=0.0013  Score=62.18  Aligned_cols=110  Identities=12%  Similarity=0.115  Sum_probs=75.1

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---  257 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---  257 (374)
                      ...++++.|+|||||++.|++.|+++|+||.+++.++  ..|.+.-...+.-+.+. .    ..++|++.|...-.+   
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~----~~~~L~~~f~~la~~~~m   79 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-I----PLASLRTGFGVIAAKFTM   79 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-C----CHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-C----CHHHHHHHHHHHHHHcCC
Confidence            3467999999999999999999999999999999985  35777666656544321 1    245666666543111   


Q ss_pred             -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                           ...+...|-|-+--+---|.+|......-.++++-+-+-+
T Consensus        80 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           80 GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             EEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence                 0223445666666666788888888877767655444443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.70  E-value=0.0008  Score=63.98  Aligned_cols=110  Identities=9%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IER  257 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~---L~~  257 (374)
                      ...++++.|+|||||++.|++.|+++|+||.++..++.  .|++.-...+..+.+. .    ..+.|++.|...   +.-
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~-~----~~~~L~~~l~~la~~l~m   95 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLP-F----DLDGFREAFTPIAEEFSM   95 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSS-S----CHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCC-C----CHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999999999999999975  5777655555543221 1    245666666432   210


Q ss_pred             ----c-cCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 ----R-ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 ----r-~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                          + ..+...|-|-+--+-.-|.++......-.++.+-+-+-+
T Consensus        96 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Vis  140 (302)
T 3o1l_A           96 DWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVIS  140 (302)
T ss_dssp             EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred             eeeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEE
Confidence                0 122333444444444577777777766555444344433

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.58  E-value=0.0017  Score=61.33  Aligned_cols=108  Identities=10%  Similarity=0.027  Sum_probs=70.0

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh----
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER----  257 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~----  257 (374)
                      ..+++|.|+|||||++.|++.|+++|+||.+++.++  ..|++.-...+..+.+  .    ..++|++.|...-.+    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDD--F----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSS--C----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCC--C----CHHHHHHHHHHHHHHcCCE
Confidence            467999999999999999999999999999999996  3566655555544321  1    246677776543211    


Q ss_pred             ----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 ----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                          ...+...|-|-+--+---|.++......-.++.+-+-+-+
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis  125 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVS  125 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEE
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEe
Confidence                0122334444444444577777777766555444444433

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.52  E-value=0.0022  Score=60.70  Aligned_cols=111  Identities=11%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHH---Hh
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAA---IE  256 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~-g~~~~~~~~~~~L~~~L~~~---L~  256 (374)
                      ...++++.|+|||||+++|++.|+++|+||.+++.++  ..|++.-...+..+. +...    ..+.|++.|...   +.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~   84 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFR   84 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcC
Confidence            3567999999999999999999999999999999996  457665555444330 1011    245666666432   21


Q ss_pred             h-----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          257 R-----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       257 ~-----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                      -     ...+...|-|-+--+---|.+|......-.++++-+-+-+
T Consensus        85 m~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis  130 (292)
T 3lou_A           85 MQWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVS  130 (292)
T ss_dssp             CEEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             cEEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEe
Confidence            0     0122333444444444578888887776655544444443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.50  E-value=0.00042  Score=65.90  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .....|+|.|+||||+.++|+++|+++|+||.+++.++.  ++.+.....+..+  +...    ..+.|++.|..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF----DLDGFREAFTP   88 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS----CHHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC----CHHHHHHHHHH
Confidence            345789999999999999999999999999999999985  4565554444331  1112    23667777765

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.49  E-value=0.0032  Score=59.42  Aligned_cols=108  Identities=9%  Similarity=0.118  Sum_probs=70.5

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---  257 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---  257 (374)
                      ...++++.|+|||||++.|++.|+++|+||.+++.++  ..|++.-...+..+..       ..+.|++.|...-.+   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-------~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVA-------GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC----------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCC-------CHHHHHHHHHHHHHHcCC
Confidence            4578999999999999999999999999999999985  3576665544443211       133666666543211   


Q ss_pred             -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                           ...+...|-|-+--+-.-|.+|......-.++++-+-+-+
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence                 0122344555555555688888888877666554444433

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.39  E-value=0.00066  Score=64.17  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....|+|.|+||||+.++|+++|+++|+||.+.+.++.  .+.+.....+.-+  +... +   .+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~-~---~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVI-P---LASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES--SCCC-C---HHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC--CCCC-C---HHHHHHHHHH
Confidence            34689999999999999999999999999999999863  4555544444332  2112 2   3677887766

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.35  E-value=0.0015  Score=57.10  Aligned_cols=131  Identities=13%  Similarity=0.156  Sum_probs=83.7

Q ss_pred             CCEEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268          182 KDYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  257 (374)
Q Consensus       182 ~~~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~  257 (374)
                      .+.+.|+|. .+|+||.++++...|++.|+||......+.   ++...-.|.+...         ..++..+.|.+....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence            356778884 699999999999999999999987666544   3333223666542         223334444431111


Q ss_pred             ---c----cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHH
Q 017268          258 ---R----ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQ  327 (374)
Q Consensus       258 ---r----~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~  327 (374)
                         .    .+.-.+|.|.+.   ++||+++++.++|++.||||...  +|..  ..-.|.|...+    ..+.++.|.++
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i--stSe--~~Is~vV~~~d----~~~Av~~Lh~~  155 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSE--IRISVLIREDD----LDAAARALHEQ  155 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE--EEET--TEEEEEEEGGG----HHHHHHHHHHH
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE--EcCC--CeEEEEEeHHH----HHHHHHHHHHH
Confidence               1    123467788776   89999999999999999999984  3432  33456563221    01345556666


Q ss_pred             Hh
Q 017268          328 IG  329 (374)
Q Consensus       328 l~  329 (374)
                      |.
T Consensus       156 F~  157 (178)
T 2dtj_A          156 FQ  157 (178)
T ss_dssp             HT
T ss_pred             Hc
Confidence            64

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.32  E-value=0.00071  Score=63.88  Aligned_cols=68  Identities=12%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      ....|+|.|+||||+.++|++.|+++|+||.+.+.++.  .+.+.....+..+  + ..    ..+.|++.|.. +..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~-~~----~~~~L~~~f~~-la~   76 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP--D-DF----DEAGFRAGLAE-RSE   76 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--S-SC----CHHHHHHHHHH-HHG
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC--C-CC----CHHHHHHHHHH-HHH
Confidence            45789999999999999999999999999999999963  4555544334321  1 12    23678888876 443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.31  E-value=0.014  Score=50.25  Aligned_cols=114  Identities=12%  Similarity=0.063  Sum_probs=75.8

Q ss_pred             ecCCCCeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268           43 VMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  120 (374)
Q Consensus        43 ~~~~~~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~  120 (374)
                      .....+...|+|. .+|+||.+++|..+|+.+|+||.--..... ++.....|.|...       +.   ++..+.|.+ 
T Consensus        19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-------~~---~~a~~~l~~-   87 (167)
T 2re1_A           19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-------DY---KQTLEILSE-   87 (167)
T ss_dssp             EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-------GH---HHHHHHHHH-
T ss_pred             EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-------HH---HHHHHHHHH-
Confidence            3555677788888 499999999999999999999986544322 2233456777431       11   233344444 


Q ss_pred             HcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCC---Ccch
Q 017268          121 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD---RPKL  197 (374)
Q Consensus       121 L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~D---rpGL  197 (374)
                      +..+..       +                                      ..|.+   ..+...+.|.+.+   +||+
T Consensus        88 ~~~~l~-------~--------------------------------------~~i~~---~~~~a~vsvvG~~m~~~~Gv  119 (167)
T 2re1_A           88 RQDSIG-------A--------------------------------------ASIDG---DDTVCKVSAVGLGMRSHVGV  119 (167)
T ss_dssp             SSTTTT-------C--------------------------------------SEEEE---ESSEEEEEEECSSCTTCCCH
T ss_pred             HHHHcC-------C--------------------------------------ceEEe---cCCEEEEEEECCCcCCCcCH
Confidence            222111       0                                      11222   2357788998876   9999


Q ss_pred             HHHHHHHHHhCCceEEEE
Q 017268          198 LFDIVCTLTDMQYVVFHG  215 (374)
Q Consensus       198 l~~i~~~l~~~glnI~~A  215 (374)
                      ++++..+|++.|+||...
T Consensus       120 ~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A          120 AAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             HHHHHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHHHCCCcEEEE
Confidence            999999999999999873

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.25  E-value=0.00085  Score=63.52  Aligned_cols=69  Identities=12%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .....|++.|+||||+.++|+++|+++|+||.+++.++.  .+.+.....+..+..+...    ..+.|++.|..
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~   78 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEP   78 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHH
Confidence            345789999999999999999999999999999999963  4555443333221001111    23677777765

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.22  E-value=0.0021  Score=55.50  Aligned_cols=119  Identities=11%  Similarity=0.095  Sum_probs=77.0

Q ss_pred             CCEEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268          182 KDYTVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  257 (374)
Q Consensus       182 ~~~t~v~V~~-~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~  257 (374)
                      .+...|++.+ +|+||.++++..+|++.|+||..-.....   .|...-.|.|...+.      .+..++-+.+...+..
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~------~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA------QEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH------HHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH------HHHHHHHHHHHHHhCC
Confidence            3567778776 89999999999999999999987544322   234455677765321      1222222223222321


Q ss_pred             c---cCCceEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268          258 R---ASEGLELELCTED---RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  310 (374)
Q Consensus       258 r---~~~~tvieV~~~D---RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d  310 (374)
                      .   .+.-..+.|.+.+   +||+++++.++|++.||||...  +|.  ...-.|.|..
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~S--e~~is~vv~~  142 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI--ATS--EVRISVIIPA  142 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE--EEC--SSEEEEEEEG
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE--Ecc--CCEEEEEEeH
Confidence            1   1234668888886   9999999999999999999544  343  2244565644

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.08  E-value=0.0012  Score=62.43  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      .....|++.|+||||+.++|+++|+++|+||.+++.++.  ++.+.....+..  .+.      .++.|++.|..
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~------~~~~L~~~f~~   71 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PVA------GVNDFNSAFGK   71 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC---------CHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CCC------CHHHHHHHHHH
Confidence            456789999999999999999999999999999999863  445544333322  111      12467777765

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.06  E-value=0.047  Score=47.47  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             cCCCCeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEee---CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           44 MPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        44 ~~~~~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~---~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....+.+.|+|. .+|+||.+++|...|+++|+||.--...+.   ++.....|.+...          ..++..+.|.+
T Consensus        10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~----------d~~~a~~~l~~   79 (178)
T 2dtj_A           10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS----------DGRRAMEILKK   79 (178)
T ss_dssp             EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH----------HHHHHHHHHHT
T ss_pred             EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc----------cHHHHHHHHHH
Confidence            455677778884 699999999999999999999985544433   2233345666431          11233333433


Q ss_pred             HHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcc
Q 017268          120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPK  196 (374)
Q Consensus       120 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpG  196 (374)
                       +..+..                             +                ..+.+   ..+...|.|.+.   +.||
T Consensus        80 -~~~~~~-----------------------------~----------------~~v~~---~~~~a~VsvVG~gm~~~~G  110 (178)
T 2dtj_A           80 -LQVQGN-----------------------------W----------------TNVLY---DDQVGKVSLVGAGMKSHPG  110 (178)
T ss_dssp             -TTTTTT-----------------------------C----------------SEEEE---ESCEEEEEEEEECCTTCHH
T ss_pred             -HHHhcC-----------------------------C----------------CeEEE---eCCeEEEEEEcCCcccCcc
Confidence             221110                             0                11222   124667788775   8999


Q ss_pred             hHHHHHHHHHhCCceEEEE
Q 017268          197 LLFDIVCTLTDMQYVVFHG  215 (374)
Q Consensus       197 Ll~~i~~~l~~~glnI~~A  215 (374)
                      +++++..+|++.|+||..-
T Consensus       111 v~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A          111 VTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             HHHHHHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHHHHCCCCEEEE
Confidence            9999999999999999873

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.03  E-value=0.0021  Score=55.67  Aligned_cols=62  Identities=18%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      +.|+|.+.||||+|++|+.+|+++|+||.++.+.+..  +...-+|-+. .  .   +..+++|..+|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d---~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--D---EKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--C---HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--c---HHHHHHHHHHHcC
Confidence            5789999999999999999999999999999997543  3455566664 2  1   4678888888775

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.85  E-value=0.004  Score=53.89  Aligned_cols=63  Identities=16%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ...|.|.+.|+||+|++|+++|+..|+||.+..+.+..+ +.. ..|.|..        +...++.|.+.|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999987653 444 4565642        13566777777776

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.84  E-value=0.24  Score=51.32  Aligned_cols=217  Identities=13%  Similarity=0.157  Sum_probs=130.2

Q ss_pred             CCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268           46 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  122 (374)
Q Consensus        46 ~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  122 (374)
                      ..+...|.|++.   .+||..+++..+|+.+|+||.--.  | . ..-..|.|...          ..++.-+.|++.+.
T Consensus       352 ~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--t-S-e~~Is~vI~~~----------d~~~Av~aLh~~f~  417 (600)
T 3l76_A          352 EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--T-S-EVKVSCVIDQR----------DADRAIAALSNAFG  417 (600)
T ss_dssp             ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--E-C-SSEEEEEEEGG----------GHHHHHHHHHHHTT
T ss_pred             cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--c-C-CCEEEEEEcHH----------HHHHHHHHHHHhhc
Confidence            466788999976   689999999999999999997543  2 2 33455666431          12344566777665


Q ss_pred             CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEE-eCCCcchHHHH
Q 017268          123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SKDRPKLLFDI  201 (374)
Q Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~-~~DrpGLl~~i  201 (374)
                      .+.. . +   .         .+ .      ...+          . ..-.-|..+   .+...|++. .+|+||+.+++
T Consensus       418 ~~~t-~-~---~---------~~-~------~~~~----------~-~~v~Gia~~---~~~a~i~i~~~~~~~g~~~~i  462 (600)
T 3l76_A          418 VTLS-P-P---K---------NQ-T------DTSH----------L-PAVRGVALD---QDQAQIAIRHVPDRPGMAAQL  462 (600)
T ss_dssp             CCBC-C-C---C---------CC-C------C-------------C-CSCCEEEEE---CSEEEEEEEEEESSTTHHHHH
T ss_pred             ccCC-C-c---c---------cc-c------cccc----------c-CceEEEEee---CCEEEEEEecCCCCccHHHHH
Confidence            4211 0 0   0         00 0      0000          0 011234443   356667775 59999999999


Q ss_pred             HHHHHhCCceEEEEEEEec----CC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhcc--------CCceEEEE
Q 017268          202 VCTLTDMQYVVFHGMVNTG----RT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA--------SEGLELEL  267 (374)
Q Consensus       202 ~~~l~~~glnI~~A~i~T~----~g--~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~--------~~~tvieV  267 (374)
                      .+.|++.|+||.--.....    +|  ..--.|.|..         +..++..+.|++. ....        +.-..|.|
T Consensus       463 f~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~-~~~~~~~~v~~~~~~akVSi  532 (600)
T 3l76_A          463 FTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPL-IKDWLDAAIVVNKAIAKVSI  532 (600)
T ss_dssp             HHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHH-TTTSTTCEEEEECCEEEEEE
T ss_pred             HHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHH-HHhcCCceEEEeCCeEEEEE
Confidence            9999999999964444432    24  2334466654         2334444444442 1111        23467888


Q ss_pred             Ee---CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          268 CT---EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       268 ~~---~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      .+   ..+||+.+++.++|++.||||....  |.  ...-.+.|...+.    ++.+..|.++|.
T Consensus       533 VG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tS--Ei~Is~vV~~~~~----~~Av~alh~~F~  589 (600)
T 3l76_A          533 VGSGMIGHPGVAAHFFAALAQENINIEMIA--TS--EIKISCVVPQDRG----VDALKAAHSAFN  589 (600)
T ss_dssp             ECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--EC--SSEEEEEEEGGGH----HHHHHHHHHHTT
T ss_pred             ECcccccCccHHHHHHHHHHHCCCceEEEE--cC--CceEEEEEeHHHH----HHHHHHHHHHhC
Confidence            76   5999999999999999999998766  32  2333455533311    134455555553

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.80  E-value=0.0038  Score=54.07  Aligned_cols=62  Identities=18%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ..|.|...|+||+|++|+.+|+++|+||.++.+.+..  +...-+|-+...      +..+++|..+|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcC
Confidence            5789999999999999999999999999999997543  445556666422      4677888888775

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.72  E-value=0.23  Score=51.43  Aligned_cols=185  Identities=16%  Similarity=0.180  Sum_probs=110.7

Q ss_pred             CeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEe-eCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268           48 EHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  125 (374)
Q Consensus        48 ~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T-~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  125 (374)
                      +.+.|+|. .+|.||.+++|...|+.+|+||.--.... .++.....|.|...       +   .++..+.|.+ +..+.
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~-------~---~~~a~~~l~~-~~~el  337 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD-------L---LNTAEAVTSA-IAPAL  337 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG-------G---HHHHHHHHHH-HGGGG
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH-------H---HHHHHHHHHH-HHHHh
Confidence            33445554 47899999999999999999994221111 12333456777541       1   1223333333 22211


Q ss_pred             cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHHHHH
Q 017268          126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIV  202 (374)
Q Consensus       126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~~i~  202 (374)
                      .                 .+..       .              .....|.+.   .+...|.|++.   .+||+.+++.
T Consensus       338 ~-----------------~~~~-------~--------------~~~~~v~~~---~~~a~VsvVG~gm~~~~Gv~a~if  376 (600)
T 3l76_A          338 R-----------------SYPE-------A--------------DQEAEIIVE---KGIAKIAIAGAGMIGRPGIAAKMF  376 (600)
T ss_dssp             S-----------------SSTT-------C--------------SSSSEEEEE---CSEEEEEEECGGGTTCTTHHHHHH
T ss_pred             h-----------------cccc-------c--------------cCcceeEec---CCeEEEEEECCCcccCccHHHHHH
Confidence            0                 0000       0              001223332   35778899875   7999999999


Q ss_pred             HHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc-cC--------------------C
Q 017268          203 CTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR-AS--------------------E  261 (374)
Q Consensus       203 ~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r-~~--------------------~  261 (374)
                      .+|++.|+||....  +. +. --.|.|...         ..++..+.|.+.+... .+                    .
T Consensus       377 ~aL~~~~Ini~~is--tS-e~-~Is~vI~~~---------d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gia~~~~  443 (600)
T 3l76_A          377 KTLADVGVNIEMIS--TS-EV-KVSCVIDQR---------DADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVALDQD  443 (600)
T ss_dssp             HHHHHTTCCCCEEE--EC-SS-EEEEEEEGG---------GHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEEEEECS
T ss_pred             HHHHhCCCcEEEEe--cC-CC-EEEEEEcHH---------HHHHHHHHHHHhhcccCCCccccccccccCceEEEEeeCC
Confidence            99999999997654  32 22 223555432         3444555666665221 11                    1


Q ss_pred             ceEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268          262 GLELEL-CTEDRVGLLSDITRIFRENSLSIKRAEIST  297 (374)
Q Consensus       262 ~tvieV-~~~DRpGLL~~It~~L~~~~i~I~~a~i~T  297 (374)
                      -..|.| ..+|+||+.++|...|++.||+|....-+.
T Consensus       444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecc
Confidence            245555 458999999999999999999997665543

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.69  E-value=0.0057  Score=52.37  Aligned_cols=59  Identities=24%  Similarity=0.438  Sum_probs=44.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      .|+|.|.||+|+|++|+++|+++++||..+.+.+.|.     +|+.-. .  .+.+.+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~-~--~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA-E--LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC-C--CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE-e--CCHHHHHHHHHHHHc
Confidence            4799999999999999999999999999999977632     555433 1  223455666665554

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.66  E-value=0.0068  Score=52.44  Aligned_cols=63  Identities=11%  Similarity=0.141  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ...|.|...|+||+|++|+++|+..|+||.+..+..+. ++.. .++.|..        ++..++.|.+.|.+
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~K   68 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcC
Confidence            36789999999999999999999999999999998654 3444 4566642        13566777777776

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.57  E-value=0.031  Score=48.04  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=72.3

Q ss_pred             cCCCCeEEEEEEe-CCccchHHHHHHHHHhcCCeEEEEEEEee---CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           44 MPTEEHTSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        44 ~~~~~~~~I~I~~-~DrpGL~a~I~~vL~~~glnI~~A~I~T~---~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....+...|+|.+ +|+||.++++..+|+++|+||.--.....   .+.....|.|...       +.   ++..+.|.+
T Consensus        11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-------d~---~~a~~~L~~   80 (167)
T 2dt9_A           11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-------FA---QEALEALEP   80 (167)
T ss_dssp             EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-------GH---HHHHHHHHH
T ss_pred             EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-------HH---HHHHHHHHH
Confidence            4566777888876 89999999999999999999985433221   1233456777541       11   222233332


Q ss_pred             HHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCC---Ccc
Q 017268          120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD---RPK  196 (374)
Q Consensus       120 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~D---rpG  196 (374)
                       +..+..                                            .  .+.+   ..+...|.|++.+   +||
T Consensus        81 -~~~~~~--------------------------------------------~--~v~~---~~~~a~vsvVG~gm~~~~G  110 (167)
T 2dt9_A           81 -VLAEIG--------------------------------------------G--EAIL---RPDIAKVSIVGVGLASTPE  110 (167)
T ss_dssp             -HHHHHC--------------------------------------------C--EEEE---ECSEEEEEEEESSGGGSTH
T ss_pred             -HHHHhC--------------------------------------------C--cEEE---eCCEEEEEEECCCcccCcC
Confidence             111000                                            0  1222   1256778888866   999


Q ss_pred             hHHHHHHHHHhCCceEEE
Q 017268          197 LLFDIVCTLTDMQYVVFH  214 (374)
Q Consensus       197 Ll~~i~~~l~~~glnI~~  214 (374)
                      +++++..+|++.|+||..
T Consensus       111 v~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A          111 VPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             HHHHHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHCCCCEEE
Confidence            999999999999999944

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.55  E-value=0.018  Score=50.47  Aligned_cols=133  Identities=12%  Similarity=0.114  Sum_probs=82.5

Q ss_pred             CEEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268          183 DYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  257 (374)
Q Consensus       183 ~~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-  257 (374)
                      +.+.|+|. .+|+||.++++..+|++.|+||..-.....   .|...-.|.|...+.      ....++-+.+...+.. 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~------~~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG------PAAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH------HHHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH------HHHHHHHHHHHHhcCcc
Confidence            45556654 589999999999999999999975544322   455556677765321      1222222222222211 


Q ss_pred             c--c-CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          258 R--A-SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       258 r--~-~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      .  . ..-..+.|.+.   ++||+.+++.++|++.||||....  |.  ...-.|.|...+.    ++.+..|.++|.
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~~d~----~~Av~aLH~~f~  158 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTEL----DKAVVALHEAFG  158 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGGH----HHHHHHHHHHHT
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeHHHH----HHHHHHHHHHHc
Confidence            1  1 23467777665   899999999999999999998877  32  2333455644311    234556655553

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.44  E-value=0.014  Score=51.63  Aligned_cols=63  Identities=14%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe-ecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS-TIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~-T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ...|.|...|+||.|++|+.+|+++|+||.++.+. |.. +...-++.|...      +..+++|..+|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence            36899999999999999999999999999999886 443 334455656432      3567888888887

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.19  E-value=0.062  Score=53.16  Aligned_cols=133  Identities=12%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             CEEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268          183 DYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  257 (374)
Q Consensus       183 ~~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-  257 (374)
                      +.+.|+|. .+|+||.++++.+.|+++|+||..-...|.   .|...-.|.|...+      ..+..++-+.+...|.. 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~------~~~a~~~l~~~~~~~~~~  336 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD------GRRAMEILKKLQVQGNWT  336 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT------HHHHHHHHHHHHTTTTCS
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh------HHHHHHHHHHHHHHcCCc
Confidence            56677887 689999999999999999999987655443   34445557776421      11222222222222221 


Q ss_pred             c---cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          258 R---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       258 r---~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      .   ...-.++.|.+.   ++||++.++.++|++.||||...  +|..  ..-.|.|...+    .++.++.|.++|.
T Consensus       337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~Se--~~is~vV~~~d----~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSE--IRISVLIREDD----LDAAARALHEQFQ  406 (421)
T ss_dssp             EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE--EEET--TEEEEEEEGGG----HHHHHHHHHHHTT
T ss_pred             eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE--EcCC--CeEEEEEeHHH----HHHHHHHHHHHHh
Confidence            1   122356777775   89999999999999999999944  3432  23345553321    0234455555554

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.93  E-value=0.04  Score=48.67  Aligned_cols=99  Identities=8%  Similarity=0.060  Sum_probs=66.4

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh----
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER----  257 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~-T~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~----  257 (374)
                      ...++|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|...       +...++|.+.|.+..+-    
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidVikV~  101 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEVVKVT  101 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCceEEEE
Confidence            35699999999999999999999999999998886 444 555555666543       13677888877764321    


Q ss_pred             -ccC--C------ceEEEEEeCCCccHHHHHHHHHHhCCceEEE
Q 017268          258 -RAS--E------GLELELCTEDRVGLLSDITRIFRENSLSIKR  292 (374)
Q Consensus       258 -r~~--~------~tvieV~~~DRpGLL~~It~~L~~~~i~I~~  292 (374)
                       -.+  .      -..+.|.+...   -.+|.+...-++-.|..
T Consensus       102 dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivD  142 (193)
T 2fgc_A          102 PIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIID  142 (193)
T ss_dssp             ECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEE
T ss_pred             EecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEE
Confidence             012  1      24677776542   45555555555544433

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.72  E-value=0.014  Score=52.41  Aligned_cols=37  Identities=30%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  299 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g  299 (374)
                      ..|.|.+.||||+|++|+++|+++++||...+..+..
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            5789999999999999999999999999999998863

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.67  E-value=0.047  Score=48.63  Aligned_cols=134  Identities=12%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             CCEEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268          182 KDYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  257 (374)
Q Consensus       182 ~~~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~  257 (374)
                      .+...|++. .+|+||+.+++.+.|++.|+||.--.....   ++.....|.+...+.      ....++.+.+...+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~------~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG------PAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH------HHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH------HHHHHHHHHHHhhhce
Confidence            356777776 599999999999999999999976543321   345555677765321      1222222233332321


Q ss_pred             c----cCCceEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          258 R----ASEGLELELC---TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       258 r----~~~~tvieV~---~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      .    .+.-..+.|.   ...+||+..++.++|++.||||....  |.  ...-.|.|...+.    .+.+..|-++|.
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS--Ei~IS~vV~~~d~----~~Av~aLH~~F~  177 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTEL----DKAVVALHEAFG  177 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGGH----HHHHHHHHHHHT
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc--CCEEEEEEeHHHH----HHHHHHHHHHhC
Confidence            1    1223455554   45899999999999999999998875  32  2344455643311    235566666654

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.49  E-value=0.066  Score=45.53  Aligned_cols=59  Identities=8%  Similarity=0.018  Sum_probs=43.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      .|.|.|.||+|++++|+.+|+.+++||....+.+. |.    +++.-+.    .+...+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~----~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAE----LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECC----CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEe----CCHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999766 43    3344331    122355555555543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.31  E-value=0.031  Score=50.26  Aligned_cols=48  Identities=10%  Similarity=0.041  Sum_probs=36.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEEe
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-----RTEAYQEFYIRH  232 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-----~g~~~dvF~V~~  232 (374)
                      ..+.+.+.||||+|++|+.+|++++.||...+..+.     ++.+.-.+.+.+
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            568999999999999999999999999999999885     345654455544

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.10  E-value=1.5  Score=37.98  Aligned_cols=114  Identities=12%  Similarity=0.056  Sum_probs=70.6

Q ss_pred             cCCCCeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEee---CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           44 MPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        44 ~~~~~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~---~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ....+...|+|. .+|+||.+++|..+|+.+|+||.--.....   .+.....|.|...       +..   +..+.|.+
T Consensus        11 a~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~~~---~a~~~L~~   80 (181)
T 3s1t_A           11 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VGP---AAVEKLDS   80 (181)
T ss_dssp             EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------THH---HHHHHHHH
T ss_pred             EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------HHH---HHHHHHHH
Confidence            334455566553 689999999999999999999964332222   2233456777541       111   22233332


Q ss_pred             HHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcc
Q 017268          120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPK  196 (374)
Q Consensus       120 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpG  196 (374)
                       +..+..                                             ...|.++   .+...|.+++.   +.||
T Consensus        81 -~~~el~---------------------------------------------~~~v~~~---~~va~VsvVG~gm~~~~G  111 (181)
T 3s1t_A           81 -LRNEIG---------------------------------------------FSQLLYD---DHIGKVSLIGAGMRSHPG  111 (181)
T ss_dssp             -THHHHC---------------------------------------------CSEEEEE---SCEEEEEEEEECCTTCHH
T ss_pred             -HHHhcC---------------------------------------------cceEEEe---CCEEEEEEEecccccCch
Confidence             110000                                             0112221   24566777764   8999


Q ss_pred             hHHHHHHHHHhCCceEEEEE
Q 017268          197 LLFDIVCTLTDMQYVVFHGM  216 (374)
Q Consensus       197 Ll~~i~~~l~~~glnI~~A~  216 (374)
                      +.+++..+|++.|+||....
T Consensus       112 vaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          112 VTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             HHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHHHHHHHCCCcEEEEE
Confidence            99999999999999998765

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.04  E-value=1.1  Score=43.95  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEeeC--C-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           48 EHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--D-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        48 ~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~--~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      +.+.|+|. .+|+||.+++|...|+++|+||.--...|..  . .....|.|...       +..   +..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~---~a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGR---RAMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THH---HHHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHH---HHHHHHHH-HHH
Confidence            44566776 5899999999999999999999855443332  2 23456777531       222   22333433 222


Q ss_pred             CCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHHH
Q 017268          124 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFD  200 (374)
Q Consensus       124 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~~  200 (374)
                      +..       .                                      ..|.+   ..+...|.|++.   +.||++++
T Consensus       332 ~~~-------~--------------------------------------~~v~~---~~~~a~vsvVG~gm~~~~Gv~a~  363 (421)
T 3ab4_A          332 QGN-------W--------------------------------------TNVLY---DDQVGKVSLVGAGMKSHPGVTAE  363 (421)
T ss_dssp             TTT-------C--------------------------------------SEEEE---ECCEEEEEEECGGGTSCTTHHHH
T ss_pred             HcC-------C--------------------------------------ceEEE---eCCeEEEEEEccCcccCccHHHH
Confidence            111       0                                      11222   125667888874   89999999


Q ss_pred             HHHHHHhCCceEEE
Q 017268          201 IVCTLTDMQYVVFH  214 (374)
Q Consensus       201 i~~~l~~~glnI~~  214 (374)
                      +..+|++.|+||..
T Consensus       364 ~f~aL~~~~InI~~  377 (421)
T 3ab4_A          364 FMEALRDVNVNIEL  377 (421)
T ss_dssp             HHHHHHHTTCCCCE
T ss_pred             HHHHHHHCCCCEEE
Confidence            99999999999983

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.09  E-value=0.55  Score=41.63  Aligned_cols=118  Identities=14%  Similarity=0.066  Sum_probs=71.9

Q ss_pred             eee-ecCCCCeEEEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeE-EEEEEecCCCCCCCCCHHHHHHHH
Q 017268           40 SVG-VMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAA-AVVHVTDHSTGYAIKDPKRLSTIK  114 (374)
Q Consensus        40 ~i~-~~~~~~~~~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~-dvf~V~~~~~g~~~~~~~~~~~l~  114 (374)
                      .|. ...+.+...|+|. .+|+||..++|.++|++.|+||-=--....  ++... ..|.+...       +.   +...
T Consensus        25 vVtGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~-------d~---~~~~   94 (200)
T 4go7_X           25 ILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VG---PAAV   94 (200)
T ss_dssp             EEEEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG-------GH---HHHH
T ss_pred             cEEEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh-------hH---HHHH
Confidence            344 4556677778776 589999999999999999999974322211  22333 46776541       11   2222


Q ss_pred             HHHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEE---e
Q 017268          115 ELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR---S  191 (374)
Q Consensus       115 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~---~  191 (374)
                      ..|.+ +..+..                                             ...|.++   .+...|.++   .
T Consensus        95 ~~l~~-~~~~~~---------------------------------------------~~~v~~~---~~iakVSvVG~GM  125 (200)
T 4go7_X           95 EKLDS-LRNEIG---------------------------------------------FSQLLYD---DHIGKVSLIGAGM  125 (200)
T ss_dssp             HHHHT-THHHHC---------------------------------------------CSEEEEE---CCEEEEEEEEESC
T ss_pred             HHHHH-HHhhhc---------------------------------------------eeeEEEe---cCeeeeeeecccc
Confidence            22222 110000                                             0112222   234455555   4


Q ss_pred             CCCcchHHHHHHHHHhCCceEEEEE
Q 017268          192 KDRPKLLFDIVCTLTDMQYVVFHGM  216 (374)
Q Consensus       192 ~DrpGLl~~i~~~l~~~glnI~~A~  216 (374)
                      +..||+.+++..+|++.|+||..-.
T Consensus       126 ~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          126 RSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            7899999999999999999998654

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.58  E-value=0.17  Score=47.40  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=44.3

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVD  317 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~  317 (374)
                      .|.|-+..+|+||.||++...|+.+|||+.+..-.-.+.+ -.=.||| |.+|..-+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d  255 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED  255 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc
Confidence            3566666679999999999999999999999998877655 5567888 66687644

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=93.02  E-value=0.61  Score=45.99  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcccCCCCCCCCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEE
Q 017268           19 VIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV   95 (374)
Q Consensus        19 ~~~~i~~~l~~~~~~~~~~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V   95 (374)
                      ..+.|.+.|..+.......-..++.....+.++|.++-+|.||.+++|..+|+++|+||.+-...|.++....+.-|
T Consensus       313 ~~~nl~~~l~~g~~~~~Vn~p~~~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          313 VTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             HHHHHHHHHHHCCCTTBSSSCCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             HHHHHHHHHhhCCCCceeeCCCcCCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            44556666654433211122345544445788999999999999999999999999999988888877765555444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.88  E-value=0.66  Score=45.56  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcccCCCCCCCCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268           19 VIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT   96 (374)
Q Consensus        19 ~~~~i~~~l~~~~~~~~~~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~   96 (374)
                      ..+.|.+.|.++.......-..++.. ..+..+|.+.-.|+||.+++|+.+|+++|+||..-+..+.++.+..++-|.
T Consensus       302 ~~~nl~~~l~g~~~~~~vn~p~~~~~-~~~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          302 VAGKLIKYSDNGSTLSAVNFPEVSLP-LHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             HHHHHHHHHHHCCCTTBSSSCCCCCC-CCSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCcceecccccccC-cCCcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            44556666664432111111123321 115678999999999999999999999999999999999776666666664

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.72  E-value=0.58  Score=44.69  Aligned_cols=54  Identities=19%  Similarity=0.341  Sum_probs=41.6

Q ss_pred             eEEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCCCCC
Q 017268          263 LELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGKV-KDTFYVTDVTGNPVD  317 (374)
Q Consensus       263 tvieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~-~D~Fyv~d~~g~~l~  317 (374)
                      +.+-+..+  |+||.||++...|+.+|||+.+..-.-...+. .=.||| |.+|..-+
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d  263 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWE  263 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTS
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCC
Confidence            33334444  79999999999999999999999988776665 447777 66787654

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=92.66  E-value=0.26  Score=46.75  Aligned_cols=93  Identities=16%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             HhCC-ceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC-CCccHHHHHHHHH
Q 017268          206 TDMQ-YVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE-DRVGLLSDITRIF  283 (374)
Q Consensus       206 ~~~g-lnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvieV~~~-DRpGLL~~It~~L  283 (374)
                      ...| ++|..-.|....+-. -.|.|-.........                 .....|.|-+..+ |+||.||++...|
T Consensus       162 ~~Yg~L~il~~~I~D~~~N~-TRFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F  223 (313)
T 3mwb_A          162 AEQPGLNVLAEDIGDNPDAV-TRFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF  223 (313)
T ss_dssp             HHCTTCEEEESCCCSCTTCE-EEEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred             HHcCChhhhhhcccCCCcce-eEEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence            4567 888887776644322 246665543321110                 0112467777775 9999999999999


Q ss_pred             HhCCceEEEEEEeecCCee-eeEEEEEcCCCCCCC
Q 017268          284 RENSLSIKRAEISTIGGKV-KDTFYVTDVTGNPVD  317 (374)
Q Consensus       284 ~~~~i~I~~a~i~T~g~~~-~D~Fyv~d~~g~~l~  317 (374)
                      +.+|||+.+..-.-..... .=.||| |.+|..-+
T Consensus       224 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d  257 (313)
T 3mwb_A          224 ASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATD  257 (313)
T ss_dssp             HTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTS
T ss_pred             HHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCc
Confidence            9999999999987765553 457888 56677644

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.41  E-value=0.56  Score=47.65  Aligned_cols=63  Identities=21%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268          260 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  326 (374)
Q Consensus       260 ~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~  326 (374)
                      +..+.+-+.-.|+||.+..|+..|.++||||...++.-.  |+.+.-++.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            446889999999999999999999999999999999764  4556666655    23455667777765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.92  E-value=0.42  Score=46.94  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  232 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~  232 (374)
                      +...+.+.-.|+||.+.+|+.+|.++|+||......+.++.++-++.|..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            34568888999999999999999999999999999998888888777765

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=91.28  E-value=0.59  Score=43.34  Aligned_cols=83  Identities=12%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             hCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEe---CCCccHHHHHHHHH
Q 017268          207 DMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCT---EDRVGLLSDITRIF  283 (374)
Q Consensus       207 ~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvieV~~---~DRpGLL~~It~~L  283 (374)
                      .+|++|..-.|....+- .-.|+|-.... +..                    ...|.|-+..   .|+||.||++...|
T Consensus       153 ~ygL~il~~~I~D~~~N-~TRF~vl~~~~-~~~--------------------~~ktsl~f~~~~~~~~pGaL~~~L~~F  210 (267)
T 2qmw_A          153 AYGFTPIDTHIEDYPHN-VTRFLVIKNQQ-QFD--------------------QNATSLMFLITPMHDKPGLLASVLNTF  210 (267)
T ss_dssp             GGTCCEEEECCCSCSCC-EEEEEEEESCC-CCC--------------------SSCSEEEEEEEESSCCTTHHHHHHHHH
T ss_pred             HCCCcEeeccccCCCCC-ceEEEEEecCC-CCC--------------------CCeEEEEEEcCCCCCCcChHHHHHHHH
Confidence            45888888777665432 22366655432 100                    1236666777   89999999999999


Q ss_pred             HhCCceEEEEEEeecCCe-eeeEEEEEcCC
Q 017268          284 RENSLSIKRAEISTIGGK-VKDTFYVTDVT  312 (374)
Q Consensus       284 ~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~  312 (374)
                      +.+|||+.+..-.-.++. -.=.||| |.+
T Consensus       211 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~e  239 (267)
T 2qmw_A          211 ALFNINLSWIESRPLKTQLGMYRFFV-QAD  239 (267)
T ss_dssp             HTTTCCEEEEEEEECSSSTTCEEEEE-EES
T ss_pred             HHcCCCeeEEEEeecCCCCccEEEEE-EEe
Confidence            999999999998877655 5568888 444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.95  E-value=1.1  Score=45.39  Aligned_cols=62  Identities=13%  Similarity=0.076  Sum_probs=47.7

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQ  249 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~  249 (374)
                      ....+.+.-+|+||.+.+++.+|.++|+||...++...  ++.++-++.+.++    ++ ++.+++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~~-~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VP-DDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CC-HHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----CC-HHHHHHHhc
Confidence            34567888999999999999999999999999999863  6778777767543    22 345555543

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=89.33  E-value=0.7  Score=46.02  Aligned_cols=117  Identities=11%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268          183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R  258 (374)
Q Consensus       183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r  258 (374)
                      +.+.|+|..   ++.||.++++..+|+++|++|....  +...  .-.|.|...+-..     ...++.+.|...+.. .
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~--~is~~V~~~d~~~-----~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVD--SVSLVIEDCKLDG-----KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETT--EEEEEEEHHHHTT-----THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCC--EEEEEEecchHHH-----HHHHHHHHHHHhcCCCc
Confidence            466788885   6899999999999999999997432  2111  2336665432110     223344444433311 1


Q ss_pred             c---CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268          259 A---SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  310 (374)
Q Consensus       259 ~---~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d  310 (374)
                      .   ..-..|.|.+.   .+||+..++.++|++.||||....-.|.  ...-.|.|..
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS--ei~Is~vV~~  423 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS--EINVIVGVET  423 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC--TTEEEEEEEG
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC--CceEEEEEcH
Confidence            1   12367888776   5899999999999999999988753232  2233455543

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=85.72  E-value=12  Score=37.03  Aligned_cols=108  Identities=8%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             CeEEEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 017268           48 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  124 (374)
Q Consensus        48 ~~~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  124 (374)
                      +.+.|+|.+   ++.||..++|..+|+.+|+||.--   +.+ .....|.|... +   ..  ...+.+.+.|.+.+.. 
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i---~~~-~~~is~~V~~~-d---~~--~~~~~~~~el~~~~~~-  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM---PSG-VDSVSLVIEDC-K---LD--GKCDKIIEEIKKQCNP-  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB---CEE-TTEEEEEEEHH-H---HT--TTHHHHHHHHHHHSCC-
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE---ecC-CCEEEEEEecc-h---HH--HHHHHHHHHHHHhcCC-
Confidence            445677775   589999999999999999999732   222 22345767541 1   00  0112333333321110 


Q ss_pred             CcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHHHH
Q 017268          125 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDI  201 (374)
Q Consensus       125 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~~i  201 (374)
                                                                      ..|.++   .+...|.|++.   ..||+.+++
T Consensus       366 ------------------------------------------------~~v~v~---~~vA~VSvVG~gM~~~~Gvaari  394 (446)
T 3tvi_A          366 ------------------------------------------------DSIEIH---PNMALVATVGTGMAKTKGIANKI  394 (446)
T ss_dssp             ------------------------------------------------SEEEEE---EEEEEEEEECGGGSSCTTHHHHH
T ss_pred             ------------------------------------------------CcEEEe---CCeEEEEEECCCccCChhHHHHH
Confidence                                                            112221   24567888875   589999999


Q ss_pred             HHHHHhCCceEEEEEE
Q 017268          202 VCTLTDMQYVVFHGMV  217 (374)
Q Consensus       202 ~~~l~~~glnI~~A~i  217 (374)
                      ..+|++.|+||.....
T Consensus       395 f~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          395 FTALSKENVNIRMIDQ  410 (446)
T ss_dssp             HHHHHHTTCCEEEEEE
T ss_pred             HHHHHHCCCCEEEEEe
Confidence            9999999999986543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.88  E-value=2.3  Score=41.83  Aligned_cols=49  Identities=12%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEE
Q 017268          183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR  231 (374)
Q Consensus       183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~  231 (374)
                      +...|.+.-+|.||.+.+|..+|+++|+||..-...|.++.++-+.-|.
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            5678999999999999999999999999999999999998877666554

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=83.29  E-value=1.8  Score=36.37  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhcc
Q 017268          183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA  259 (374)
Q Consensus       183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~  259 (374)
                      +...|+|.+   ++.||..+++..+|+++|+||..-.  +...  --.|.|.+.+        .++++.+.|.. . ...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~-~-~~v   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSD-I-GDV   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTT-T-EEE
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhc-c-CeE
Confidence            466788874   5899999999999999999985433  2222  2346665321        12233233322 1 111


Q ss_pred             ---CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcC
Q 017268          260 ---SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDV  311 (374)
Q Consensus       260 ---~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~  311 (374)
                         ..-..+.|.+.   ++||+..++..+|+  |++|....   +|.. ..-.|.|...
T Consensus        83 ~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is---qg~Se~~is~vv~~~  136 (157)
T 3mah_A           83 TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS---YGGSNYNVSVLVKAE  136 (157)
T ss_dssp             EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE---ECSSSSCEEEEEEGG
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe---eCCCCCEEEEEEcHH
Confidence               12356777765   68999999999999  89887754   3322 3345656443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=81.37  E-value=1.5  Score=43.55  Aligned_cols=50  Identities=36%  Similarity=0.452  Sum_probs=35.4

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDV  311 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~  311 (374)
                      .+-+.+...|+||.|..|+.+|.++||+|++..=.-.  ++.......+|..
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~  410 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV  410 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence            4789999999999999999999999999998753221  1112445556553

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=80.74  E-value=3  Score=42.10  Aligned_cols=119  Identities=13%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHhhc
Q 017268          183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPIS-SEAERERVIQCLEAAIERR  258 (374)
Q Consensus       183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~-~~~~~~~L~~~L~~~L~~r  258 (374)
                      +.+.|+|.+   .+.||+++++..+|+++|+||..-.  +..  .--.|.|...+..... ....++++.+.|.. + ..
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse--~sis~~v~~~~~~~~~~~~~~l~~~~~el~~-~-~~  413 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSE--VSISLTLDPSKLWSRELIQQELDHVVEELEK-I-AV  413 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EET--TEEEEEECCGGGSSSCCCHHHHHHHHHHHTT-T-SE
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCC--CeEEEEEechHhhhhhHHHHHHHHHHHHhCC-C-Ce
Confidence            567788885   7899999999999999999998663  221  1223666543211110 11223333332221 0 01


Q ss_pred             c---CCceEEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEc
Q 017268          259 A---SEGLELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTD  310 (374)
Q Consensus       259 ~---~~~tvieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d  310 (374)
                      .   ..-.+|.|.+.  ..||+..++..+|++.||||....   .|.. ..-.|.|..
T Consensus       414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV~~  468 (510)
T 2cdq_A          414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIVNE  468 (510)
T ss_dssp             EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEEEH
T ss_pred             EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEEeH
Confidence            0   12356777777  788999999999999999998764   4433 334565643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	1e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	1e-04
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.004

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
          +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 4  QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
          I   G D+ G+ + V   +A+L  N+ +      ++    +  V+
Sbjct: 5  ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 4/44 (9%), Positives = 16/44 (36%)

Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 93
            +     ++ G+  ++  ++A+   N+  A+ +          
Sbjct: 2  RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.84
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.77
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.62
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.6
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.33
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.1
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.06
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.78
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.77
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.67
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.6
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.51
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.38
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.11
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.11
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.06
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.06
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.04
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.99
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.94
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.87
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.82
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.06
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.48
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	91.2
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	89.36
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.03
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.85
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.31
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.21
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.08
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.59

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.84  E-value=1.3e-08  Score=77.31  Aligned_cols=69  Identities=23%  Similarity=0.453  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268           46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  123 (374)
Q Consensus        46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  123 (374)
                      ...++.|+++|+||||++++++++|+++||||.+++.++.++.+...+.|.-+        +..+++++..|.+ ++.
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~-l~~   70 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL-LGQ   70 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH-HHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH-HHH
Confidence            45688999999999999999999999999999999999999998888888641        2456788888877 443

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.77  E-value=3.4e-08  Score=74.97  Aligned_cols=65  Identities=20%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ..+++|++.|+||||++++++++++++|+||.+++..+.++.+.-.+.|..+       +...++|+..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999888888764       2356677777654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.62  E-value=1.3e-07  Score=70.98  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ++|++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+..+.+.      ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            5799999999999999999999999999999999999988877777765432      13455555543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.60  E-value=1.5e-07  Score=70.67  Aligned_cols=63  Identities=16%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..|+|.|+||||+.++++++|+++|+||.+.+.++.++.+...+.+..+ .+.   +   .+.+++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHH
Confidence            5799999999999999999999999999999999998888877777653 221   2   2567777776

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.33  E-value=5.5e-07  Score=69.08  Aligned_cols=67  Identities=13%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe----eeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK----VKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~----~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ..|.|.|+|||||+++|+++|+++|+||..+.-.|+...    ..+.|.++-.-..|- ...+++|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-cccHHHHHHHHHH
Confidence            457788999999999999999999999999999887543    455677654422232 1234555555543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.10  E-value=9.3e-06  Score=61.92  Aligned_cols=64  Identities=13%  Similarity=-0.012  Sum_probs=45.6

Q ss_pred             EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--------eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268          184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--------EAYQEFYIRHVDGLPISSEAERERVIQCLEA  253 (374)
Q Consensus       184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g--------~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~  253 (374)
                      ...|+|.|+|||||+++|+++|+++|+||.+.+..+..+        .+.-.+.+..|.+.      ....|++.|..
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~------~~~~l~~~l~~   77 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGC------NLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTS------CHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccc------cHHHHHHHHHH
Confidence            356889999999999999999999999999999877432        23334444555432      23455655544

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.06  E-value=5.5e-06  Score=60.12  Aligned_cols=47  Identities=6%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  310 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d  310 (374)
                      +|.|..+||||-|++++++|.+.||||+++.+...++++.-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            58899999999999999999999999999999999999988888843

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.78  E-value=4e-05  Score=55.40  Aligned_cols=48  Identities=10%  Similarity=0.021  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  233 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~  233 (374)
                      +|.|..+|+||-|++++++|++.|+||.....+..++++.-+|.+.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            478899999999999999999999999999999888999888888654

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=0.0001  Score=54.09  Aligned_cols=61  Identities=21%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  326 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~  326 (374)
                      ++.+-+.-.|+||+|.+|+.+|+++|+||...++.+.  |+.+.-++-+   ++ +++++.+++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~-~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQ-DVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SS-CCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CC-CccHHHHHHHHc
Confidence            5678899999999999999999999999999999775  4455555544   33 455566666654

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.67  E-value=0.0001  Score=53.04  Aligned_cols=48  Identities=4%  Similarity=-0.023  Sum_probs=42.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  232 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~  232 (374)
                      -++.|...||||.|++++++|++.|+||.+..+....+..+-.+.|.+
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            358999999999999999999999999999999887777776776654

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.60  E-value=9.5e-05  Score=53.15  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  308 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv  308 (374)
                      .+.|...||||.|++|+.+|+++|+||.+..+....+...-.|-+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            488999999999999999999999999999998877777666644

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.51  E-value=6.7e-05  Score=55.01  Aligned_cols=48  Identities=29%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-C--eeeeEEEEEcC
Q 017268          264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-G--KVKDTFYVTDV  311 (374)
Q Consensus       264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~--~~~D~Fyv~d~  311 (374)
                      -|.|.+.||||+|.+|+.+|+++|+||..+...+.. +  ...-.|++.+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            478999999999999999999999999999887742 2  34556777665

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00068  Score=49.48  Aligned_cols=48  Identities=17%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC--CeeEEEEEE
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV   95 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~--~~~~dvf~V   95 (374)
                      .++.+.+.-.|+||.+++|+.+|+++|+||...++.+..  +.+..++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            456888999999999999999999999999999998753  333344444

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.11  E-value=0.00015  Score=53.07  Aligned_cols=48  Identities=10%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-ee--EEEEEEec
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RA--AAVVHVTD   97 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~--~dvf~V~~   97 (374)
                      .-|.|.+.||||+|++|+.+++.+|.||...+..+..+ .+  ...+.+.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            45889999999999999999999999999999888543 33  24555644

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00094  Score=48.44  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..+.++..|+||+|++|+++|+..|+||.+-.+.-+. +++.-+-.+..   |    +++.++.|.+.|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhC
Confidence            4688999999999999999999999999998888654 34442222322   2    23456667777766

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.0012  Score=48.21  Aligned_cols=64  Identities=13%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268          263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  330 (374)
Q Consensus       263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~  330 (374)
                      ++|.+...|+||+|.+|+..|+.+|+||+++.+....+...-.+-+.-. |.   ++.++++...|.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~-g~---~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK-GD---DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE-EC---TTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE-cC---HHHHHHHHHHHhC
Confidence            6789999999999999999999999999999988765443333322221 22   3456777777765

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0029  Score=46.55  Aligned_cols=45  Identities=16%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEE
Q 017268           48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAV   92 (374)
Q Consensus        48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dv   92 (374)
                      +...+.+.-.|+||.+++|+++|+++|+||.+-...+.++....+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~   54 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVV   54 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEE
Confidence            446899999999999999999999999999998888876644433

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00098  Score=48.59  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeE
Q 017268           49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAA   90 (374)
Q Consensus        49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~   90 (374)
                      ...|.++..|+||+|++|+++|+..|+||.+-.+..+.+ +..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iS   45 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLS   45 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeE
Confidence            357899999999999999999999999999998887654 444

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.99  E-value=0.0012  Score=48.02  Aligned_cols=62  Identities=11%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268           50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  119 (374)
Q Consensus        50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~  119 (374)
                      ..|.++..|+||.|++|+++|+..|+||.+-.+.-+. +++. .++.+..        +++.++.+.+.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999988654 4544 3444432        23456677777766

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0041  Score=45.69  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=37.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEE
Q 017268          185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  230 (374)
Q Consensus       185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V  230 (374)
                      ..+.+.-.|+||++++|+.+|+++|+||.+....+.++....+..+
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            4678888999999999999999999999999998876544433333

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0019  Score=46.81  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      .+.+...|+||+|++++++|+..|+||.+..+.- ...... .|.+.-. |    ++..++++...|.+.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iS-R~tivv~-~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS-RMTIQTV-G----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEE-EEEEEEE-S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCee-EEEEEEE-C----CHHHHHHHHHHHhCC
Confidence            4889999999999999999999999999999874 433332 2333321 1    134677777777664

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.82  E-value=0.0031  Score=45.73  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=47.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268          186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  254 (374)
Q Consensus       186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~  254 (374)
                      .+.+...|+||+|++++++|+..|+||.+..+.- .. |..--++.+...       +..++++...|.+.
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~-------~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-------DEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-------HHHHHHHHHHHHHS
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC-------HHHHHHHHHHHhCC
Confidence            4889999999999999999999999999999974 33 444444555432       34677777777664

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.06  E-value=0.014  Score=42.41  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             EEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268          267 LCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP  315 (374)
Q Consensus       267 V~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~  315 (374)
                      +...|+||.|+++...|+++|||+.+..-.-..++ -.=.|||.- +|..
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~-~g~~   55 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-DSAI   55 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-SCCS
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ecCC
Confidence            34569999999999999999999999998766554 455788844 5754

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0086  Score=45.27  Aligned_cols=52  Identities=19%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCC
Q 017268          262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKV-KDTFYVTDVTGN  314 (374)
Q Consensus       262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~-~D~Fyv~d~~g~  314 (374)
                      .|.|-+...|+||.|+++...|+++|||+.+..-.-..... .=.||| |.+|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            47788888999999999999999999999998887655443 447888 56676

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.20  E-value=0.2  Score=37.26  Aligned_cols=54  Identities=11%  Similarity=0.072  Sum_probs=40.2

Q ss_pred             CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCC
Q 017268          182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGL  236 (374)
Q Consensus       182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~  236 (374)
                      .+.|.|.+..+|+||-|+++...|+.+|+|+..-...-. +....-.|||.- +|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~-eg~   68 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL-DKR   68 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB-CGG
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc-ccC
Confidence            456778888899999999999999999999987766643 322333488854 443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.36  E-value=0.7  Score=32.84  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268          187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH  232 (374)
Q Consensus       187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~  232 (374)
                      +.+...|+||-|+++...|+++|+|+..-...-.. ....=.|+|.-
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            34445799999999999999999999887776543 22333477765

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.03  E-value=0.57  Score=34.19  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             eEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC
Q 017268          263 LELELCT---EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDV  311 (374)
Q Consensus       263 tvieV~~---~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~  311 (374)
                      +.|.|.+   .++||++++|..+|++.||||.....+    ...-.|.|.+.
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S----e~~is~~v~~~   61 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPS   61 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec----CCeEEEEEchh
Confidence            5788876   499999999999999999999988632    22335666433

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.85  E-value=2.7  Score=28.44  Aligned_cols=45  Identities=9%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             EEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268           51 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD   97 (374)
Q Consensus        51 ~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~   97 (374)
                      .|.+++   +++||+.+++..+|+.+|+||.--...+  ...-..|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~--Se~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS--SEVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS--CSSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC--ccceEEEEEeH
Confidence            577877   5899999999999999999998433222  23345677754

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.31  E-value=0.51  Score=34.44  Aligned_cols=50  Identities=14%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             cCCCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268           44 MPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD   97 (374)
Q Consensus        44 ~~~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~   97 (374)
                      ....+.+.|+|.+.   ++||..++|..+|+.+|+||.--.  |.  .....|.|.+
T Consensus         8 ~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is--~S--e~~is~~v~~   60 (91)
T d2cdqa2           8 VLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS--EVSISLTLDP   60 (91)
T ss_dssp             EEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE--TTEEEEEECC
T ss_pred             EEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE--ec--CCeEEEEEch
Confidence            34456788999874   999999999999999999998543  32  2234566643

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.21  E-value=1.9  Score=31.76  Aligned_cols=65  Identities=14%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             CCCeEEEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268           46 TEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  122 (374)
Q Consensus        46 ~~~~~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  122 (374)
                      ..+...|++++   +++||+.+++..+|+..|+||.--...+  ......|.|...       +   .++..+.|.+.+.
T Consensus        12 ~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~--Se~~Isf~V~~~-------d---~~~a~~~L~~~f~   79 (100)
T d2hmfa3          12 IKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS--SETNISLVVSEE-------D---VDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC--TTCCEEEEECST-------T---HHHHHHHHHHHHC
T ss_pred             cCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC--CcceEEEEEeHH-------H---HHHHHHHHHHHHH
Confidence            34677899988   6899999999999999999998533222  233456777431       1   2344556666654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.08  E-value=2.1  Score=29.04  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=41.2

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268          264 ELELCT---EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG  329 (374)
Q Consensus       264 vieV~~---~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~  329 (374)
                      +|.|.+   .++||+..++..+|++.||||....-.|  ....-.|.|.+.+.    ++.++.|.++|.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~--Se~~Is~~V~~~d~----~~Av~~Lh~~F~   65 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS--SEVNISFVIDEKDL----LNCVRKLHEKFI   65 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS--CSSEEEEEEEGGGH----HHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC--ccceEEEEEeHHHH----HHHHHHHHHHHh
Confidence            466766   5899999999999999999998876433  23455777755421    234455555543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.59  E-value=2.5  Score=31.02  Aligned_cols=48  Identities=8%  Similarity=0.014  Sum_probs=35.7

Q ss_pred             CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268          183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  232 (374)
Q Consensus       183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~  232 (374)
                      +...|++.+   +++||+.+++..+|++.|+||..-...+..  .--.|.|..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~~   64 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSE   64 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEECS
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEeH
Confidence            467788887   799999999999999999999865544332  222466644