Citrus Sinensis ID: 017272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHcccccccccccEEEEEEccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEcccccHHHHcEEEEccccccccccEEEEEEEcccccccccEEEccccccEEEEEEEEcccccccccccccccccEcccccHHEcccHccHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccEcccccEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mssssclllsssvpriKKEAFANirtkrdastsasvsiscklkpappcpltlffnsnpakQKIVLVRSrtetgsgtdsdtdlatlagedsaafdlknqkltSWVYFSVILGVVLFLLQLLwidnstgygKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRydgmqlwqlqgapgvhqIVWLSSFVSFFFlypstfnllevaavdepkmhlWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLighhlfgvwngdKRLATRYGEAFEAVKRrtsvipfaaiitgrqilpkdyykefirlpyltitALTLGAYIAHPLMQSASFLLHW
Flexible Loop (DISEMBL)
mssssclllsssvprIKKEafanirtkrdastsasvsiSCKLKPAPPCPLTLFFNSNPAKQKIVLVRsrtetgsgtdsdtdlATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEavkrrtsvipfaaiitgrqilpkdYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Low Complexity Region (SEG)
MssssclllsssVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTEtgsgtdsdtdlatlagEDSAAFDLKNQKLTSWVYFSvilgvvlfllqllWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLssfvsfffLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Disordered region (IsUnstruct)
***************************************CKLKPAPPCPLTLFFNSNPAKQKIVLV************************AAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLL**
Disordered Region (DISOPRED)
******L**SSSVPR***********************************************************************GEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Disordered Region (DISEMBL)
********LSSSVPRIKKEAFANIRT***********ISCKLKPAPPCPLTLFFNSNPAKQKIVLVR**********SDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Disordered Region (DISPRO)
*****CLLLSSSVPRIKKEAFANIRTKRD*STSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSR**************TLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q9SAC0	367	15-cis-zeta-carotene isom	yes	no	0.844	0.861	0.755	1e-145
B4FHU1	366	15-cis-zeta-carotene isom	N/A	no	0.882	0.901	0.676	1e-128

>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/319 (75%), Positives = 281/319 (88%), Gaps = 3/319 (0%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHL 295
           NLLEVAAVD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASLGLI HHL
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHL 288

Query: 296 FGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALT 355
           FG WNGD+RLA RYGE FE++K+RTSVIPFAAI  GRQ+LP+DYYKEF+RLPYL ITALT
Sbjct: 289 FGAWNGDRRLAKRYGEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALT 348

Query: 356 LGAYIAHPLMQSASFLLHW 374
           +GAY AHPLMQ ASF LHW
Sbjct: 349 VGAYFAHPLMQGASFRLHW 367

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/331 (67%), Positives = 270/331 (81%), Gaps = 1/331 (0%)

Query: 45  APPCPLT-LFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
           AP  PL+ +  ++ PA+     +  +    +  D       L GEDSAAF+LK+Q + SW
Sbjct: 36  APLPPLSRVLSHARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95

Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
            YF+ ILG VL  L +LWID STG G  F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96  AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155

Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS 223
           LR+ GEK++G R YRVLFAG+SLPLAV+TIVYFINHRYDG QLWQ+QG  G+H+++W SS
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSS 215

Query: 224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVA 283
           F+SFFFLYPSTFNLLEVAAVD+PK+H+WETG+MRITRHPQMVGQVIWCLAHTLWIGNSVA
Sbjct: 216 FISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVA 275

Query: 284 AAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEF 343
            AAS+GLI HHLFG WNGD+RL +RYGEAFE +K+RTSV+PFAAII GRQ LPKDY+KEF
Sbjct: 276 VAASVGLISHHLFGAWNGDRRLLSRYGEAFEVLKKRTSVMPFAAIIDGRQKLPKDYHKEF 335

Query: 344 IRLPYLTITALTLGAYIAHPLMQSASFLLHW 374
            RLPY+ IT LTLGAY AHPLMQ++S+ L W
Sbjct: 336 FRLPYVAITMLTLGAYFAHPLMQASSYQLPW 366

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
224131464	374	predicted protein [Populus trichocarpa]	0.804	0.804	0.802	1e-146
255557164	384	conserved hypothetical protein [Ricinus	0.925	0.901	0.673	1e-143
18391209	367	15-cis-zeta-carotene isomerase [Arabidop	0.844	0.861	0.755	1e-143
297849442	366	hypothetical protein ARALYDRAFT_471219 [	0.831	0.849	0.759	1e-142
21554297	367	unknown [Arabidopsis thaliana]	0.844	0.861	0.749	1e-142
449468784	372	PREDICTED: 15-cis-zeta-carotene isomeras	0.810	0.814	0.790	1e-141
357462929	358	hypothetical protein MTR_3g084950 [Medic	0.847	0.885	0.728	1e-140
363807150	369	uncharacterized protein LOC100793910 [Gl	0.874	0.886	0.710	1e-140
356569844	374	PREDICTED: uncharacterized protein LOC10	0.775	0.775	0.8	1e-140
357520421	364	hypothetical protein MTR_8g097190 [Medic	0.852	0.876	0.716	1e-140

>gi|224131464|ref|XP_002321091.1| predicted protein [Populus trichocarpa] gi|222861864|gb|EEE99406.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/304 (80%), Positives = 278/304 (91%), Gaps = 3/304 (0%)

Query: 74  SGTDSDTDLAT---LAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGK 130
           S  D+DTD +    LAGEDSAAF+L  QK++SW+YFS+ILGVVLF+L + WIDNSTG+GK
Sbjct: 71  STKDADTDTSVPPPLAGEDSAAFELGKQKVSSWIYFSLILGVVLFVLDVAWIDNSTGFGK 130

Query: 131 AFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAV 190
            FI +VSSLS+S EVVM +LILIFATVHSGLASLRDMGEK+IG RA+RVLFAGVSLPLAV
Sbjct: 131 DFISAVSSLSESPEVVMFILILIFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAV 190

Query: 191 STIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHL 250
           ST+VYFINHRYDG+QLW+LQ AP VHQ+VWLS+F+SF FLYPSTFNLLEVAAVD+PKMHL
Sbjct: 191 STVVYFINHRYDGIQLWELQSAPAVHQLVWLSNFISFLFLYPSTFNLLEVAAVDKPKMHL 250

Query: 251 WETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYG 310
           WETG+MRITRHPQMVGQV+WCLAHT+WIGNSV  AASLGLIGHHLFGVWNGD+RLATRYG
Sbjct: 251 WETGIMRITRHPQMVGQVMWCLAHTVWIGNSVTVAASLGLIGHHLFGVWNGDRRLATRYG 310

Query: 311 EAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASF 370
           EAFEAVK+RTS++PFAAI+ GRQ LPKDYY+ F+RLPYL+ITALTLGAY AHPLMQ+ASF
Sbjct: 311 EAFEAVKKRTSIVPFAAILDGRQKLPKDYYRXFLRLPYLSITALTLGAYFAHPLMQAASF 370

Query: 371 LLHW 374
            LHW
Sbjct: 371 RLHW 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557164|ref|XP_002519613.1| conserved hypothetical protein [Ricinus communis] gi|223541203|gb|EEF42758.1| conserved hypothetical protein [Ricinus communis]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/380 (67%), Positives = 302/380 (79%), Gaps = 34/380 (8%)

Query: 2   SSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCK-LKPAPPCPLTLFFNSNPAK 60
           S+ + LLL++S+P  + +                 SIS K L+P P        NS P  
Sbjct: 20  SNPTQLLLATSIPTFQNQT--------------KYSISSKFLRPNP--------NSVPFS 57

Query: 61  QKIVLVRSRTETGSGTDSDTDLATLA------GEDSAAFDLKNQKLTSWVYFSVILGVVL 114
            +I+    RT+T S  D+DT  ++        GEDSAAF+L  QK++SW+YFSVILGV L
Sbjct: 58  SRII----RTQT-SIRDADTSSSSSVSEETVVGEDSAAFELGKQKMSSWIYFSVILGVAL 112

Query: 115 FLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGA 174
           ++L + WIDNSTG+GK+FI SVS+LS+SHE VML+LI IFATVHSGLASLRD GE++IG 
Sbjct: 113 YVLDVAWIDNSTGFGKSFIQSVSTLSESHEAVMLILIFIFATVHSGLASLRDKGEELIGE 172

Query: 175 RAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPST 234
           RAYRVLFAGVSLPLA+ST+VYFINHRYDG+QLWQLQ AP VHQ+VWL +F+SFFFLYPST
Sbjct: 173 RAYRVLFAGVSLPLAMSTVVYFINHRYDGVQLWQLQSAPAVHQLVWLFNFISFFFLYPST 232

Query: 235 FNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHH 294
           FNLLEVAAVD+PKMHLWETG+MRITRHPQMVGQVIWCLAHT+WIGNSVAA AS+GL+GHH
Sbjct: 233 FNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQVIWCLAHTIWIGNSVAAVASIGLVGHH 292

Query: 295 LFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITAL 354
           LFGVWNGD+RLA RYGEAFE VKRRTS++PFAAI+ GRQ LPKDY KEF+RLPY +ITAL
Sbjct: 293 LFGVWNGDRRLAKRYGEAFEVVKRRTSIVPFAAILDGRQELPKDYIKEFVRLPYFSITAL 352

Query: 355 TLGAYIAHPLMQSASFLLHW 374
           TLGAY AHPLMQ+AS  L W
Sbjct: 353 TLGAYFAHPLMQAASSRLQW 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391209|ref|NP_563879.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana] gi|75200564|sp|Q9SAC0.1|ZCIS_ARATH RecName: Full=15-cis-zeta-carotene isomerase, chloroplastic; Flags: Precursor gi|4874265|gb|AAD31330.1|AC007354_3 EST gb|F13926 comes from this gene [Arabidopsis thaliana] gi|13194774|gb|AAK15549.1|AF348578_1 unknown protein [Arabidopsis thaliana] gi|62320518|dbj|BAD95085.1| hypothetical protein [Arabidopsis thaliana] gi|332190530|gb|AEE28651.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/319 (75%), Positives = 281/319 (88%), Gaps = 3/319 (0%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHL 295
           NLLEVAAVD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASLGLI HHL
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHL 288

Query: 296 FGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALT 355
           FG WNGD+RLA RYGE FE++K+RTSVIPFAAI  GRQ+LP+DYYKEF+RLPYL ITALT
Sbjct: 289 FGAWNGDRRLAKRYGEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALT 348

Query: 356 LGAYIAHPLMQSASFLLHW 374
           +GAY AHPLMQ ASF LHW
Sbjct: 349 VGAYFAHPLMQGASFRLHW 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849442|ref|XP_002892602.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata] gi|297338444|gb|EFH68861.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/312 (75%), Positives = 275/312 (88%), Gaps = 1/312 (0%)

Query: 64  VLVRSRTETGSGTDSDTDLATL-AGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWI 122
           +LV S         SD +  TL  GEDSAAF+L  QKL SWVYF V+LGVVLF+L ++WI
Sbjct: 55  ILVHSTLREDQPIASDAESPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWI 114

Query: 123 DNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFA 182
           DNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG RA+RVLFA
Sbjct: 115 DNSTGFGKSFIDTVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFA 174

Query: 183 GVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAA 242
           G+SLPLA+STIVYFINHRYDG QLWQLQG PG+H+ +W+++FVSFFFLYPSTFNLLEVAA
Sbjct: 175 GISLPLAMSTIVYFINHRYDGSQLWQLQGVPGIHEAIWVANFVSFFFLYPSTFNLLEVAA 234

Query: 243 VDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGD 302
           VD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASLGLI HHLFG WNGD
Sbjct: 235 VDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHLFGAWNGD 294

Query: 303 KRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAH 362
           +RLA RYGEAFE++K+RTSVIPFAAI  GRQ+LP+DYYKEF+RLPYL ITALT+GAY AH
Sbjct: 295 RRLAKRYGEAFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALTVGAYFAH 354

Query: 363 PLMQSASFLLHW 374
           PLMQ ASF LHW
Sbjct: 355 PLMQGASFRLHW 366

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554297|gb|AAM63372.1| unknown [Arabidopsis thaliana]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/319 (74%), Positives = 280/319 (87%), Gaps = 3/319 (0%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +D ++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDYESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHL 295
           NLLEVAAVD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASLGLI HHL
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHL 288

Query: 296 FGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALT 355
           FG WNGD+RLA RYG+ FE++K+RTSVIPFAAI  GRQ+LP+DYYKEF+RLPYL ITALT
Sbjct: 289 FGAWNGDRRLAKRYGKDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALT 348

Query: 356 LGAYIAHPLMQSASFLLHW 374
           +GAY AHPLMQ ASF LHW
Sbjct: 349 VGAYFAHPLMQGASFRLHW 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468784|ref|XP_004152101.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus] gi|449521697|ref|XP_004167866.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/305 (79%), Positives = 273/305 (89%), Gaps = 2/305 (0%)

Query: 71  ETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTG-YG 129
           E+G G+ S +D     GED+AAFDL  QKLTSWVYF+VILGVVLF+L ++WIDNS G  G
Sbjct: 69  ESG-GSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVG 127

Query: 130 KAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLA 189
           KAF+D+VS +SDSHEVVML+LI IFA VHSGLASLRD GEK++G RA+RVLFAGVSLPLA
Sbjct: 128 KAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLA 187

Query: 190 VSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMH 249
           VST+VYFINHRYDG+QLWQLQ  P +HQ+VWLSSFVSF FLYPSTFNLLEVAAVD+PKMH
Sbjct: 188 VSTVVYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMH 247

Query: 250 LWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRY 309
           LWETG++RITRHPQMVGQVIWCLAHT+WIGNSVA AAS+GLIGHHLFGVWNGD+RLA RY
Sbjct: 248 LWETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRY 307

Query: 310 GEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSAS 369
           G  FEAVK RTS+IPFAAI+ GRQ LP DYYKEF+RLPYL+ITALT+GAY+AHPLMQ+AS
Sbjct: 308 GADFEAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAAS 367

Query: 370 FLLHW 374
           F LHW
Sbjct: 368 FRLHW 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462929|ref|XP_003601746.1| hypothetical protein MTR_3g084950 [Medicago truncatula] gi|217074294|gb|ACJ85507.1| unknown [Medicago truncatula] gi|355490794|gb|AES71997.1| hypothetical protein MTR_3g084950 [Medicago truncatula]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/320 (72%), Positives = 274/320 (85%), Gaps = 3/320 (0%)

Query: 55  NSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVL 114
           NS P         S     S  + DT   T  GEDSAAF+L  QK+TSW+YF+ ILGVVL
Sbjct: 42  NSKPLSFSHRFNFSFVTHSSVKEKDT---TFVGEDSAAFNLTEQKITSWIYFAAILGVVL 98

Query: 115 FLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGA 174
           F+L ++WIDNSTG+GKAF+D+VS LSDSHEVVML+LIL+FA  HSG+ASLR+ GEK+IG 
Sbjct: 99  FILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILVFAVFHSGMASLRNTGEKIIGE 158

Query: 175 RAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPST 234
           RA+RV+FAG+SLPLAV+TIVYFINHRYDG+QLWQLQ  PG+HQ++WLS+F+SFFFLYPST
Sbjct: 159 RAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPST 218

Query: 235 FNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHH 294
           FNLLE+AAVD+PK+HL+ETG++RITRHPQMVGQVIWCLAHT+WIGNSVA AAS+GLI HH
Sbjct: 219 FNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHH 278

Query: 295 LFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITAL 354
           LFG WNGD+RLA R+GE FE VKRRTS++PFAAI+ GRQ LP D+YKEFIRLPYL ITAL
Sbjct: 279 LFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITAL 338

Query: 355 TLGAYIAHPLMQSASFLLHW 374
           TLGAY AHPLMQ+ASF LHW
Sbjct: 339 TLGAYFAHPLMQTASFNLHW 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807150|ref|NP_001242088.1| uncharacterized protein LOC100793910 [Glycine max] gi|255639319|gb|ACU19957.1| unknown [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/338 (71%), Positives = 279/338 (82%), Gaps = 11/338 (3%)

Query: 41  KLKPAPPCPLTLFFNSNPAK----QKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLK 96
            LK +  C    F NSN       +K V   +RT  G             GEDSA F+L 
Sbjct: 39  NLKLSSQC----FSNSNSVAPIYCRKFV---ARTSIGENESESEKELGFVGEDSAVFELG 91

Query: 97  NQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFAT 156
            QK++SW+YF+ ILGVVL++L + WIDNSTGYGKAFID+VS+LSDS EVVML+LILIFA 
Sbjct: 92  KQKVSSWIYFTAILGVVLYVLNVAWIDNSTGYGKAFIDAVSTLSDSSEVVMLILILIFAG 151

Query: 157 VHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVH 216
           VHSGLAS R+ GEK+IG R +RVLFAG+SLPLAVST+VYFINHRYDG+QLWQLQ APG+H
Sbjct: 152 VHSGLASFRNTGEKLIGERPFRVLFAGISLPLAVSTVVYFINHRYDGLQLWQLQDAPGLH 211

Query: 217 QIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTL 276
           Q++WLS+F+SFFFLYPSTFNLLEVAAVD+PK+HLWETG++RITRHPQMVGQVIWCLAHT+
Sbjct: 212 QLLWLSNFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMVGQVIWCLAHTI 271

Query: 277 WIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILP 336
           WIGNSVA AAS+GLI HHLFGVWNGD+RLA RYGE FE V+ RTSV+PFAAI+ GRQ LP
Sbjct: 272 WIGNSVAVAASIGLIAHHLFGVWNGDRRLAIRYGEDFELVRSRTSVVPFAAILDGRQELP 331

Query: 337 KDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW 374
           KD+YKEFIRLPYLT+T +TLGAY AHPLMQ+ASF LHW
Sbjct: 332 KDFYKEFIRLPYLTVTVITLGAYFAHPLMQAASFNLHW 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569844|ref|XP_003553105.1| PREDICTED: uncharacterized protein LOC100820507 [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 232/290 (80%), Positives = 266/290 (91%)

Query: 85  LAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHE 144
           L GEDSAAF+L  QK++SW+YF+ ILGVVL +L + WIDNSTGYGKAFID+VS+LSDSHE
Sbjct: 85  LVGEDSAAFELGKQKISSWIYFTAILGVVLCVLNVAWIDNSTGYGKAFIDAVSTLSDSHE 144

Query: 145 VVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGM 204
           VVML+LILIFA VHSGLAS R+ GEK+IG R +RV+FAG+SLPLAVST+VYFINHRYDG+
Sbjct: 145 VVMLILILIFAGVHSGLASFRNTGEKLIGERPFRVIFAGISLPLAVSTVVYFINHRYDGL 204

Query: 205 QLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQM 264
           QLW LQ APG+HQ++WLS+F+SFFFLYPSTFNLLEVAAVD+PK+HLWETG++RITRHPQM
Sbjct: 205 QLWLLQDAPGLHQLLWLSNFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQM 264

Query: 265 VGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIP 324
           VGQVIWCLAHT+WIGNSVA AAS+GLI HHLFGVWNGD+RLA RYGE FE VK RTSV+P
Sbjct: 265 VGQVIWCLAHTIWIGNSVAVAASIGLIAHHLFGVWNGDRRLAIRYGEDFELVKSRTSVVP 324

Query: 325 FAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW 374
           FAAI+ GRQ LPKD+YKEFIRLPYLT+TALTLGAY AHPLMQ+ASF LHW
Sbjct: 325 FAAILDGRQKLPKDFYKEFIRLPYLTVTALTLGAYFAHPLMQTASFNLHW 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520421|ref|XP_003630499.1| hypothetical protein MTR_8g097190 [Medicago truncatula] gi|355524521|gb|AET04975.1| hypothetical protein MTR_8g097190 [Medicago truncatula]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/325 (71%), Positives = 277/325 (85%), Gaps = 6/325 (1%)

Query: 53  FFNSNP---AKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVI 109
           +F+SNP   + + +  V S  E  +   +D+DL    GEDSA FD++NQKL+SW YF+ +
Sbjct: 43  YFSSNPLLLSHKLVTRVSSSEERATTQVTDSDLV---GEDSATFDIQNQKLSSWFYFTAV 99

Query: 110 LGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGE 169
           LGVVL +L ++WID+STG+GKAF+DS+S +SDSHEVVMLVL+LIFA VHSGLAS RD GE
Sbjct: 100 LGVVLSVLNVIWIDDSTGFGKAFVDSISGISDSHEVVMLVLVLIFAGVHSGLASFRDTGE 159

Query: 170 KVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFF 229
           K+IG RAYRVLFAG SLPLA++ IVYFINHRYDG+QLWQLQ  PGVHQ+VW+S+F+SF F
Sbjct: 160 KLIGERAYRVLFAGTSLPLALTMIVYFINHRYDGLQLWQLQDVPGVHQLVWISNFISFLF 219

Query: 230 LYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLG 289
           LYP+TFNLLEVAAVD+PK+HL+ETG+MRITRHPQMVGQV+WCLAHT+WIGNSVA AAS  
Sbjct: 220 LYPATFNLLEVAAVDKPKLHLYETGIMRITRHPQMVGQVMWCLAHTVWIGNSVAVAASFA 279

Query: 290 LIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYL 349
           LI HHLFGVWNGD++LA RYGE FE VK RTSV+PFAAI+ GRQ LPKD+YKEFIRLPY 
Sbjct: 280 LIAHHLFGVWNGDRKLAERYGEDFEIVKGRTSVVPFAAILDGRQKLPKDFYKEFIRLPYF 339

Query: 350 TITALTLGAYIAHPLMQSASFLLHW 374
           TITALTLGAY AHPLM++AS  LHW
Sbjct: 340 TITALTLGAYFAHPLMRAASLKLHW 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2196475	367	Z-ISO "15-cis-zeta-carotene is	0.863	0.880	0.690	7.4e-121
UNIPROTKB|Q60BH7	226	MCA0498 "Putative uncharacteri	0.486	0.805	0.311	3.9e-09
UNIPROTKB|Q0C1Y5	237	HNE_1547 "NnrU family protein"	0.534	0.843	0.253	6.5e-08

TAIR|locus:2196475 Z-ISO "15-cis-zeta-carotene isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 225/326 (69%), Positives = 259/326 (79%)

Query:    51 TLFFNSNPAKQKIVLVRS--RTEXXXXXXXXXXXXXXXXEDSAAFDLKNQKLTSWVYFSX 108
             +L  +S+P  +KI LVRS  R +                EDSAAF+L  QKL SWVYF  
Sbjct:    43 SLLSSSSPVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGV 101

Query:   109 XXXXXXXXXXXXWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMG 168
                         WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+G
Sbjct:   102 VLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIG 161

Query:   169 EKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLXXXXXXX 228
             EK+IG RA+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+       
Sbjct:   162 EKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFF 221

Query:   229 XLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASL 288
              LYPSTFNLLEVAAVD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASL
Sbjct:   222 FLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASL 281

Query:   289 GLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPY 348
             GLI HHLFG WNGD+RLA RYGE FE++K+RTSVIPFAAI  GRQ+LP+DYYKEF+RLPY
Sbjct:   282 GLIAHHLFGAWNGDRRLAKRYGEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPY 341

Query:   349 LTITALTLGAYIAHPLMQSASFLLHW 374
             L ITALT+GAY AHPLMQ ASF LHW
Sbjct:   342 LAITALTVGAYFAHPLMQGASFRLHW 367

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016120 "carotene biosynthetic process" evidence=IMP

GO:0090471 "9,15,9'-tri-cis-zeta-carotene isomerase activity" evidence=IDA

UNIPROTKB|Q60BH7 MCA0498 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 152 (58.6 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 61/196 (31%), Positives = 93/196 (47%)

Query:   147 MLVLILIFATVH---SGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDG 203
             + + +L F  +H   SG  SLRD      G +A+R  F+ +SL LA+  +V F   +   
Sbjct:     4 LALAMLFFVGIHFLISG-TSLRDRLVAYRGEQAFRAAFSVLSL-LALGWVV-FAYRQAPY 60

Query:   204 MQLW-QLQGAPGVHQIVWLXXXXXXXXLYPSTFNLLEVAAVDEPKMHLWET--GVMRITR 260
             ++ W QL G   +  ++ L           +T N   V+   E  ++  E   G++RITR
Sbjct:    61 VETWGQLTGFKPIAAVLMLVSFIFVVAGL-TTPNPTAVSG--ESVLNDAEAARGILRITR 117

Query:   261 HPQMVGQVIWCLAHTLWIGNSVAAAASLG-LIGHHLFGVWNGDKRLATRYGEAFEAVKRR 319
             HP + G  +W L H +  G+ VAA    G L+   L G  + D +    YG+ +E     
Sbjct:   118 HPFLWGLSLWALVHVIANGD-VAALLLFGSLLALCLAGTRSIDAKRRRTYGDRWERFAAA 176

Query:   320 TSVIPFAAIITGRQIL 335
             TS +PF AI  GR  L
Sbjct:   177 TSNVPFMAIKEGRNRL 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C1Y5 HNE_1547 "NnrU family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 144 (55.7 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 55/217 (25%), Positives = 94/217 (43%)

Query:   152 LIFATVHSGLA--SLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQL 209
             L+F   H+  A   +R     ++G  AY  L++ VSL L    I+      Y  +  W  
Sbjct:    20 LVFLVSHALPARPGIRIRLVSLLGRWAYLALYSAVSLALFAWLIIAAGRAPYVWLWFWGP 79

Query:   210 QG---APGVHQIVWLXXXXXXXXLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVG 266
              G   A G+  +  L          P +   L   A +  +      G++ +TRHP +  
Sbjct:    80 HGLWLANGLMALALLLVIGGTAIANPFSLGGLAERAYNPAR-----PGILAVTRHPLLWA 134

Query:   267 QVIWCLAHTLWIGNSVAAAASLGLIG-HHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPF 325
              V+W LAH +  G+ +A     G +G   + G+   + R   R G  +  + R TS++PF
Sbjct:   135 MVLWSLAHLIANGD-LAHVLLFGSLGVFSVVGILAMETRSRMRGGALWSQMIRGTSLVPF 193

Query:   326 AAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAH 362
             AA++TG        ++E ++L  L +  +  G  + H
Sbjct:   194 AALLTGNA-----RWRELLQLRMLLLPVVWGGLILLH 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      374       326   0.00087  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  227 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.45u 0.13s 22.58t   Elapsed:  00:00:01
  Total cpu time:  22.46u 0.13s 22.59t   Elapsed:  00:00:01
  Start:  Sat May 11 02:23:55 2013   End:  Sat May 11 02:23:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4FHU1	ZCIS_MAIZE	5, ., 2, ., 1, ., 1, 2	0.6767	0.8823	0.9016	N/A	no
Q9SAC0	ZCIS_ARATH	5, ., 2, ., 1, ., 1, 2	0.7554	0.8449	0.8610	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140939	hypothetical protein (374 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.548
	estExt_fgenesh4_pm.C_700037	zeta-carotene desaturase (EC-1.14.99.30) (530 aa)	•		•				•		0.523
	fgenesh4_pm.C_LG_XIII000161	zeta-carotene desaturase (EC-1.14.99.30) (582 aa)	•		•				•		0.520
	gw1.IV.4597.1	annotation not avaliable (66 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•						0.504
	grail3.0003047901	photosystem II protein Psb27 (176 aa)			•						0.503
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•						0.502
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•						0.501
	gw1.X.280.1	hypothetical protein (95 aa)			•						0.500
	gw1.VIII.1120.1	hypothetical protein (94 aa)			•						0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
COG4094	219	COG4094, COG4094, Predicted membrane protein [Func	4e-56
pfam07298	184	pfam07298, NnrU, NnrU protein	3e-34

>gnl|CDD|226579 COG4094, COG4094, Predicted membrane protein [Function unknown]

 Score =  182 bits (464), Expect = 4e-56
 Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 14/230 (6%)

Query: 146 VMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQ 205
           ++++ +++F  +HS            + A A+R      S  LA   +  F++ R  G+ 
Sbjct: 3   ILVLGLVLFLGLHSV----------RVAAPAFRARLIAASGKLAWRGLYSFVSLRGLGLV 52

Query: 206 LWQLQGAPGVHQIVW-LSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQM 264
           +W +Q   GV  ++W   ++     L  +TF L+ +AA  +P  HL+E  ++RITRHPQ+
Sbjct: 53  IWAVQVVRGVPPMLWDPPAWSRHLALLLATFALILLAAGLKPAQHLYEGRIIRITRHPQL 112

Query: 265 VGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIP 324
           +G VIW LAH L  G++ +     G +   + GVW+GD+R   RYGEAF A  + TS IP
Sbjct: 113 LGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWSGDRRARKRYGEAFVAPVQVTSRIP 172

Query: 325 FAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW 374
           FAAI+ GRQ L  D   EFI+  Y+ + A     +  HPL+   + +  W
Sbjct: 173 FAAILGGRQRLVWD---EFIKPAYVGVVAFLALLWWLHPLLFGVTPMALW 219

Length = 219

>gnl|CDD|203608 pfam07298, NnrU, NnrU protein

 Score =  124 bits (314), Expect = 3e-34
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 26/188 (13%)

Query: 146 VMLVLILIFATVHSGLAS--LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDG 203
           ++++ + +F   HS   +  LR      +G R Y+ L++ +SL   V  I+ +   RY  
Sbjct: 1   LLILGLALFLGAHSFPRAPPLRARLIARLGERGYKGLYSLLSLAGLVLIIIGYGAARYV- 59

Query: 204 MQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQ 263
             LW     P +  +  L   ++F  L  +      +                RITRHP 
Sbjct: 60  -PLWPPP--PWLRHLANLLMLLAFILLAAAYGPGNPIK---------------RITRHPM 101

Query: 264 MVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVI 323
           + G  +W LAH L  G+  +     G +   L G+   D+R     G A+ A    TS+ 
Sbjct: 102 LWGVALWALAHLLANGDLASVILFGGFLAWALVGIILIDRR-----GRAWAAPAAATSIW 156

Query: 324 PFAAIITG 331
           P    +  
Sbjct: 157 PDLRAVVA 164

This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PF07298	191	NnrU: NnrU protein; InterPro: IPR009915 This famil	100.0
COG4094	219	Predicted membrane protein [Function unknown]	100.0
COG2020	187	STE14 Putative protein-S-isoprenylcysteine methylt	99.66
PF04191	106	PEMT: Phospholipid methyltransferase ; InterPro: I	99.38
KOG2628	201	consensus Farnesyl cysteine-carboxyl methyltransfe	99.11
PF06966	235	DUF1295: Protein of unknown function (DUF1295); In	98.71
PF04140	94	ICMT: Isoprenylcysteine carboxyl methyltransferase	98.49
COG3752	272	Steroid 5-alpha reductase family enzyme [General f	98.47
KOG4650	311	consensus Predicted steroid reductase [General fun	97.66
PF01222	432	ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam	97.39
KOG1435	428	consensus Sterol reductase/lamin B receptor [Lipid	95.96
COG1755	172	Uncharacterized protein conserved in bacteria [Fun	95.48
KOG4142	208	consensus Phospholipid methyltransferase [Lipid tr	88.03
PLN02392	260	probable steroid reductase DET2	87.87
PF02544	150	Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase	82.8

>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins

Probab=100.00  E-value=3.2e-42  Score=317.16  Aligned_cols=187  Identities=28%  Similarity=0.438  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHhhCc--chhhhHHHHhhcccchhhHHHHHHHHHHHHHHHHHhhccCCcccccccCCCchhHHHHHHHH
Q 017272          146 VMLVLILIFATVHSGL--ASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS  223 (374)
Q Consensus       146 ilillLllF~~~HSll--aslR~~li~~lG~~~YR~lYSLLSLv~LvliI~~y~~~~~~~v~LW~~~~~pg~~~l~wll~  223 (374)
                      ++++++++|.++||++  +++|+++++++|+++||++||++|++++++++++|++.+.+ .++|++++|  .+|+.+++|
T Consensus         1 ~li~~l~lF~~~Hs~~~~p~~R~~l~~~lG~~~y~~~ysllSl~~l~lii~~~~~a~~~-~~lw~~~~~--~~~l~~~lm   77 (191)
T PF07298_consen    1 LLILGLALFLGQHSVPARPGLRARLIARLGERGYRGLYSLLSLAGLVLIIWGYRSAPFV-PPLWDPPPW--LRHLANLLM   77 (191)
T ss_pred             CHHHHHHHHHHHHhhhccHhhhHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhCCCC-CcccCCchh--HHHHHHHHH
Confidence            4789999999999996  56999999999999999999999999999999999655555 389999976  899999999


Q ss_pred             HHHHHHhcccccchhhhhhccCCcccccccc--ccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhhhhh
Q 017272          224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETG--VMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNG  301 (374)
Q Consensus       224 lla~~ll~~~~fgl~~~~~~~~P~~~Lv~tG--IyritRHPmylG~~LWalaHlL~nGdlasLlLfg~llayal~Gi~~e  301 (374)
                      +++++++..+.+          +.     ..  |||+|||||++|+++||++|+++|||++++++|++|++|+++|+..+
T Consensus        78 ~~a~il~~~a~~----------~~-----~~~~i~r~~RHP~l~g~~lWA~aHLl~nGd~~~~lLFg~~~~~al~~~~~~  142 (191)
T PF07298_consen   78 LLAFILLVAALF----------PP-----NPFSIYRITRHPMLLGVLLWALAHLLANGDLASLLLFGGFLAWALIGIILI  142 (191)
T ss_pred             HHHHHHHHHHhc----------cC-----cchHHHHHhcCchHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999886543          21     12  99999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHhcHhHHHHHhhcCCCcchhhcccCccCCcchhhhhhhHHHHHHHHHHHHHHHHchhhhhccc
Q 017272          302 DKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASF  370 (374)
Q Consensus       302 ERRL~r~fGe~y~~Y~~~Tp~iPF~Ail~Gr~~l~~D~~~e~~~~~~~~gl~ly~~~~~lHp~l~g~s~  370 (374)
                      ||| +| +|++|++|+++|+..||            |      ..++++|+++|+++.++||+++|||+
T Consensus       143 ~rr-~~-~g~~~~~~~~~~s~~~~------------~------~~~~~~g~~~~~~~~~~H~~l~Gv~P  191 (191)
T PF07298_consen  143 DRR-RR-FGDAWRAYPRRTSIWPF------------D------LIRVVAGLVLYAALLWLHPWLIGVSP  191 (191)
T ss_pred             HHh-hc-cccccccccCCCCCCCc------------c------HHHHHHHHHHHHHHHHHhHhHhCCCC
Confidence            999 88 99999999999999876            4      48999999999999889999999985

NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].

>COG4094 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.4e-41  Score=312.07  Aligned_cols=215  Identities=33%  Similarity=0.515  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhhCc---chhhhHHHHhhcccchhhHHHHHHHHHHHHHHHHHhhccCCcccccccCCCchhHHHHHH
Q 017272          145 VVMLVLILIFATVHSGL---ASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWL  221 (374)
Q Consensus       145 lilillLllF~~~HSll---aslR~~li~~lG~~~YR~lYSLLSLv~LvliI~~y~~~~~~~v~LW~~~~~pg~~~l~wl  221 (374)
                      +++++++++|.+.||+.   |.+|++++...|+.+|+++|+++|+..+.|+++++...+..+..+|+++.|  .+|+..+
T Consensus         2 ~~lvl~l~lFl~~Hsv~~~~p~~R~~~i~~~g~~a~~glys~vs~~~lglvi~~~~~v~~v~~~lw~p~a~--~~h~~l~   79 (219)
T COG4094           2 LILVLGLVLFLGLHSVRVAAPAFRARLIAASGKLAWRGLYSFVSLRGLGLVIWAVQVVRGVPPMLWDPPAW--SRHLALL   79 (219)
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHhcCCcceehHHHHHHHHhhhhhheeeeccCCCCcceeCcHHH--HHHHHHH
Confidence            46889999999999995   459999999999999999999999999999998774333333349999887  7788888


Q ss_pred             HHHHHHHHhcccccchhhhhhccCCccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhhhhh
Q 017272          222 SSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNG  301 (374)
Q Consensus       222 l~lla~~ll~~~~fgl~~~~~~~~P~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlLfg~llayal~Gi~~e  301 (374)
                      .+.++++++.+..          +|..++.+++|.|+||||+++|+++||++|+++|||..++++|++|++|+++++++.
T Consensus        80 ~a~~~l~~l~A~~----------~p~~~~~~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~l~~~~~~~~~  149 (219)
T COG4094          80 LATFALILLAAGL----------KPAQHLYEGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWSG  149 (219)
T ss_pred             HHHHHHHHHHhhc----------cccccccCCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHHHHHHHHhhhh
Confidence            8888888876542          366677889999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHhcHhHHHHHhhcCCCcchhhcccCccCCcchhhhhhhHHHHHHHHHHHHHHHHchhhhhccccCCC
Q 017272          302 DKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALTLGAYIAHPLMQSASFLLHW  374 (374)
Q Consensus       302 ERRL~r~fGe~y~~Y~~~Tp~iPF~Ail~Gr~~l~~D~~~e~~~~~~~~gl~ly~~~~~lHp~l~g~s~~~~~  374 (374)
                      |||.++++||+|..-+++||.+||+||++|||++.   ++|+...++++++.....++++||+++|+++.+.|
T Consensus       150 ~rR~r~r~g~a~~~~~~~ts~~pfaAI~~Gr~~l~---~d~~i~~a~~~~v~~~~ll~~~H~~Lfg~~p~~~~  219 (219)
T COG4094         150 DRRARKRYGEAFVAPVQVTSRIPFAAILGGRQRLV---WDEFIKPAYVGVVAFLALLWWLHPLLFGVTPMALW  219 (219)
T ss_pred             hhhhhcccCcceeeeeccccccchhhhhcCceeee---ccccchHHHHHHHHHHHHHHhhhHHheeccccccC
Confidence            99999999999999999999999999999999998   66999999888555555559999999999999887

>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=9.4e-16  Score=140.58  Aligned_cols=78  Identities=26%  Similarity=0.492  Sum_probs=72.4

Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH-HHhhhhhhcHHHHHhcHhHHHHHhhcC-CCc
Q 017272          247 KMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHH-LFGVWNGDKRLATRYGEAFEAVKRRTS-VIP  324 (374)
Q Consensus       247 ~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlLfg~llaya-l~Gi~~eERRL~r~fGe~y~~Y~~~Tp-~iP  324 (374)
                      +.+++++|+|+++|||||+|..+|.++..+..++..+++.++.+.++. .+.+..|||+|+++||++|++|+++|| .+|
T Consensus       104 ~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~r~iP  183 (187)
T COG2020         104 GHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIFVVLVALLFLFRIREEERYLRAEFGDEYREYRKRVPRLIP  183 (187)
T ss_pred             CCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCCccCC
Confidence            458999999999999999999999999999999999999999987776 899999999999999999999999998 455

>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2

Probab=99.38  E-value=1.4e-12  Score=107.29  Aligned_cols=67  Identities=24%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHH-HHHHHhhhhhhcHHHHHhcHhH
Q 017272          247 KMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLI-GHHLFGVWNGDKRLATRYGEAF  313 (374)
Q Consensus       247 ~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlLfg~ll-ayal~Gi~~eERRL~r~fGe~y  313 (374)
                      +.+++++|+||++|||||+|.++..++..+..++...+++..... .+....+..|||.++++|||+|
T Consensus        39 ~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~~~~~~~~EE~~L~~~fG~~Y  106 (106)
T PF04191_consen   39 PQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLYYIFIIRFEERFLERRFGEEY  106 (106)
T ss_pred             CCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCcCC
Confidence            347999999999999999999887788888888888777666554 4455566699999999999987

1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process

>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.4e-10  Score=107.56  Aligned_cols=79  Identities=23%  Similarity=0.399  Sum_probs=66.6

Q ss_pred             cccccccccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhh-hhhhcHHHHHhcHhHHHHHhhcC-CCcc
Q 017272          248 MHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGV-WNGDKRLATRYGEAFEAVKRRTS-VIPF  325 (374)
Q Consensus       248 ~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlLfg~llayal~Gi-~~eERRL~r~fGe~y~~Y~~~Tp-~iPF  325 (374)
                      -.++++|+|+++|||.|.|+++|+++.=+.-.+..+++.+.....-..... ..||+.+..-||++|.+|+++|+ -+||
T Consensus       120 h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fFg~~Y~eY~kkV~sGiPf  199 (201)
T KOG2628|consen  120 HKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFFGSSYVEYAKKVPSGIPF  199 (201)
T ss_pred             ceeEeccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHhCCcCCCC
Confidence            369999999999999999999999998888888888887776655445554 45777789999999999999997 6887


Q ss_pred             h
Q 017272          326 A  326 (374)
Q Consensus       326 ~  326 (374)
                      .
T Consensus       200 i  200 (201)
T KOG2628|consen  200 I  200 (201)
T ss_pred             C
Confidence            4

>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long

Probab=98.71  E-value=2.3e-07  Score=88.13  Aligned_cols=73  Identities=29%  Similarity=0.395  Sum_probs=52.3

Q ss_pred             cccccccccccccchhHHH-HHHHHHHHHhhhccHHH---HHHHHHHHHH----HHHhhhhhhcHHHHHhc--HhHHHHH
Q 017272          248 MHLWETGVMRITRHPQMVG-QVIWCLAHTLWIGNSVA---AAASLGLIGH----HLFGVWNGDKRLATRYG--EAFEAVK  317 (374)
Q Consensus       248 ~~Lv~tGIyritRHPmylG-~~LWalaHlL~nGdlas---LlLfg~llay----al~Gi~~eERRL~r~fG--e~y~~Y~  317 (374)
                      .++.++|++|++|||=|.| +++|..--+...+....   ..+.+.++.+    .+-|+...|++..+++|  ++|++|+
T Consensus       153 g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~  232 (235)
T PF06966_consen  153 GKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQ  232 (235)
T ss_pred             CccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHH
Confidence            3688999999999999999 56676555554443222   2333333222    23378899999999999  9999999


Q ss_pred             hhc
Q 017272          318 RRT  320 (374)
Q Consensus       318 ~~T  320 (374)
                      ++|
T Consensus       233 ~~t  235 (235)
T PF06966_consen  233 RRT  235 (235)
T ss_pred             hcC
Confidence            987

>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2

Probab=98.49  E-value=2.8e-07  Score=76.35  Aligned_cols=61  Identities=23%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHh--hhccHHHHHHHHHHHHHHHHhhhhhhcHHH
Q 017272          246 PKMHLWETGVMRITRHPQMVGQVIWCLAHTL--WIGNSVAAAASLGLIGHHLFGVWNGDKRLA  306 (374)
Q Consensus       246 P~~~Lv~tGIyritRHPmylG~~LWalaHlL--~nGdlasLlLfg~llayal~Gi~~eERRL~  306 (374)
                      |+-+++|+|+||++|||.|+|.++|+++...  .|.....++++.........=+..|||-+.
T Consensus        31 ~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~RI~~EE~~L~   93 (94)
T PF04140_consen   31 PGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWLLFVRIREEERALI   93 (94)
T ss_dssp             TT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4557999999999999999998888876543  443334455444333222344455665554

1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.

>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]

Probab=98.47  E-value=1.9e-06  Score=83.18  Aligned_cols=76  Identities=30%  Similarity=0.433  Sum_probs=53.8

Q ss_pred             ccccccccccccchhHHHH-HHHHHHHHhhhccHHHHH-HHHHH----HHHHHHhhh-hhhcHHHHHhcHhHHHHHhhcC
Q 017272          249 HLWETGVMRITRHPQMVGQ-VIWCLAHTLWIGNSVAAA-ASLGL----IGHHLFGVW-NGDKRLATRYGEAFEAVKRRTS  321 (374)
Q Consensus       249 ~Lv~tGIyritRHPmylG~-~LWalaHlL~nGdlasLl-Lfg~l----layal~Gi~-~eERRL~r~fGe~y~~Y~~~Tp  321 (374)
                      ++-++|+.|+||||=|.|= +.|..-.+++..+....- +...+    +...+=|+. +|||.++.+  +.|++|+++|+
T Consensus       183 kll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~r--~~fr~Yq~rt~  260 (272)
T COG3752         183 KLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWAVASPLLMTWLLVHVSGVPPLEEKMLKSR--PGFREYQRRTN  260 (272)
T ss_pred             ccccccceecccCcchHHHHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHhcCCChHHHHHhccc--HhHHHHHHHhc
Confidence            6888999999999999995 567666665443332222 12222    333456777 788888776  89999999998


Q ss_pred             -CCcch
Q 017272          322 -VIPFA  326 (374)
Q Consensus       322 -~iPF~  326 (374)
                       ++|+.
T Consensus       261 ~F~P~~  266 (272)
T COG3752         261 AFFPRP  266 (272)
T ss_pred             ccCCCC
Confidence             78875

>KOG4650 consensus Predicted steroid reductase [General function prediction only]

Probab=97.66  E-value=0.00048  Score=67.03  Aligned_cols=75  Identities=24%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             cccccccccccchhHHHH-HHHHH----HHHhhhccHHHHHHHHHHHHHHHHhhhhhhcHHHHHhcHhHHHHHhhcC-CC
Q 017272          250 LWETGVMRITRHPQMVGQ-VIWCL----AHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTS-VI  323 (374)
Q Consensus       250 Lv~tGIyritRHPmylG~-~LWal----aHlL~nGdlasLlLfg~llayal~Gi~~eERRL~r~fGe~y~~Y~~~Tp-~i  323 (374)
                      .-.+|+.|++|||=|+|= ++|-.    +..+-.|-...++...+++...+.-....|++..+++. +|+.|++.|+ .+
T Consensus       215 ~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~wtvi~~lv~~~~l~~~t~lie~~~v~~~~-aYR~Yqktts~~i  293 (311)
T KOG4650|consen  215 WCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLEWTVIAGLVFLTLLLLFTSLIELLEVEKYP-AYRVYQKTTSRFI  293 (311)
T ss_pred             cccccceeeccCccHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHhcccccc
Confidence            345799999999999994 55432    22334444444544444444445555677777777655 8999999997 67


Q ss_pred             cc
Q 017272          324 PF  325 (374)
Q Consensus       324 PF  325 (374)
                      |+
T Consensus       294 p~  295 (311)
T KOG4650|consen  294 PR  295 (311)
T ss_pred             cc
Confidence            74

>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis

Probab=97.39  E-value=0.0003  Score=72.89  Aligned_cols=77  Identities=22%  Similarity=0.363  Sum_probs=49.8

Q ss_pred             cccccccccccccchhHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHhhhhhhcHHHHHhcHhHHHHHhhcC--CC
Q 017272          248 MHLWETGVMRITRHPQMVGQVIWCLAHTLWIGN--SVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTS--VI  323 (374)
Q Consensus       248 ~~Lv~tGIyritRHPmylG~~LWalaHlL~nGd--lasLlLfg~llayal~Gi~~eERRL~r~fGe~y~~Y~~~Tp--~i  323 (374)
                      .+|.++|..++.|||=|+|-++-+++..++-|-  .....-..-+++..+-=....|+|=+++||++|++|+++||  ++
T Consensus       349 ~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~~pyfy~~~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy~~i  428 (432)
T PF01222_consen  349 SKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSILPYFYPIFFTILLIHRARRDEERCRKKYGKDWDEYCKRVPYRII  428 (432)
T ss_pred             CeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCEEEe
Confidence            478999999999999999977644444444333  22222222222221222234466668899999999999998  55


Q ss_pred             c
Q 017272          324 P  324 (374)
Q Consensus       324 P  324 (374)
                      |
T Consensus       429 P  429 (432)
T PF01222_consen  429 P  429 (432)
T ss_pred             C
Confidence            5

They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane

>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=95.96  E-value=0.012  Score=61.07  Aligned_cols=72  Identities=25%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             cccccccccccccchhHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHHHHHhh-hhhhcHHHHHhcHhHHHHHhhcC
Q 017272          248 MHLWETGVMRITRHPQMVGQVIWCLAHTLWIG---NSVAAAASLGLIGHHLFGV-WNGDKRLATRYGEAFEAVKRRTS  321 (374)
Q Consensus       248 ~~Lv~tGIyritRHPmylG~~LWalaHlL~nG---dlasLlLfg~llayal~Gi-~~eERRL~r~fGe~y~~Y~~~Tp  321 (374)
                      ..|.++|-+++.|||=|+|-.+=+++..++.|   .+...-  ..+....++.. ...|.|=+++||++|++|+++||
T Consensus       345 s~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lpyfy--~iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~Vp  420 (428)
T KOG1435|consen  345 SKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLPYFY--PIYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVP  420 (428)
T ss_pred             CeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcchHH--HHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCC
Confidence            37888999999999999997654444433222   222211  11111112222 23355668899999999999998

>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=0.17  Score=46.80  Aligned_cols=95  Identities=18%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             hhhHHHHhhcccchhhHHHHHHHHHHHHHHHHHhhccCCcccccccCCCchhHHHHHHHHHHHHHHhc---ccccchhhh
Q 017272          164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLY---PSTFNLLEV  240 (374)
Q Consensus       164 lR~~li~~lG~~~YR~lYSLLSLv~LvliI~~y~~~~~~~v~LW~~~~~pg~~~l~wll~lla~~ll~---~~~fgl~~~  240 (374)
                      .|+....-.|+.-|+.+..+=.+..+..++-.+....  . .-|       ..+++.++.+.+..+.+   .+.-+....
T Consensus        29 ~~a~Ga~E~G~~n~~~l~ilH~~~yls~ivE~~~~~~--~-f~~-------~~~~gl~~~l~s~~ll~~vi~~LG~iWtt   98 (172)
T COG1755          29 LIAKGAKEYGKTNYKLLVILHTAFYLSCIVEAWLNNT--F-FNW-------LSIIGLALLLFSQILLYWVIKSLGEIWTT   98 (172)
T ss_pred             HHHCcchhhCccccchHHHHHHHHHHHHHHHHHHhCC--c-ccc-------ccHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence            3333334477777877766666656666665553322  1 122       22444555555544443   111011111


Q ss_pred             hhccCCccccccccccccccchhHHH-HH
Q 017272          241 AAVDEPKMHLWETGVMRITRHPQMVG-QV  268 (374)
Q Consensus       241 ~~~~~P~~~Lv~tGIyritRHPmylG-~~  268 (374)
                      +-.--|+.+.+++|.||++|||=|.- ++
T Consensus        99 ki~ilP~h~~v~sglfk~~kHPNYflnIi  127 (172)
T COG1755          99 KIMILPNHQIVRSGLFKTMKHPNYFLNII  127 (172)
T ss_pred             eEEEeCCceeeccccchhccCCcHHHHHH
Confidence            11223677899999999999999987 54

>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]

Probab=88.03  E-value=4.5  Score=37.78  Aligned_cols=132  Identities=11%  Similarity=0.084  Sum_probs=71.1

Q ss_pred             hhhHHHHhhcccchhhHHHHHHHHHHHHHHH--HHh--hccCCcccccccCCCchhHHHHHHH-------HHHHHHHhc-
Q 017272          164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIV--YFI--NHRYDGMQLWQLQGAPGVHQIVWLS-------SFVSFFFLY-  231 (374)
Q Consensus       164 lR~~li~~lG~~~YR~lYSLLSLv~LvliI~--~y~--~~~~~~v~LW~~~~~pg~~~l~wll-------~lla~~ll~-  231 (374)
                      -++.+.+..| ..|++-|.+.+.+.+.-++-  .|.  ....|...+-+-|.|   .-++.++       .+-+++-+. 
T Consensus        46 ~~~~Ltk~~g-g~~kaCYmLaatIf~lgivRd~~y~~Al~~QPt~~~~~~p~~---~~lg~alfglG~VLVLSSmykLG~  121 (208)
T KOG4142|consen   46 KTRKLTKAFG-GPYKACYMLAATIFLLGIVRDHCYTQALLSQPTMESLDTPAA---YSLGLALFGLGVVLVLSSMYKLGF  121 (208)
T ss_pred             hHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccChHH---HHHHHHHHhhhHHHHHHHHHHhcc
Confidence            4556777777 48999999998877665542  121  112233223333332   1122222       222222221 


Q ss_pred             c-----cccchhhhhhccCCccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhhhhhhcHHH
Q 017272          232 P-----STFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLA  306 (374)
Q Consensus       232 ~-----~~fgl~~~~~~~~P~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlLfg~llayal~Gi~~eERRL~  306 (374)
                      .     ..||++-      ++  =++.-.+.+.-||||+|--+--++..+..|..+.+++-.....-..+....||---.
T Consensus       122 ~GTyLGDYFGiL~------~e--RVtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpaGLllt~~V~f~Y~iAL~~EEPFTA  193 (208)
T KOG4142|consen  122 AGTYLGDYFGILK------EE--RVTGFPFNVLDNPMYWGSTLNFLGWALMHGKPAGLLLTVLVAFTYIIALLYEEPFTA  193 (208)
T ss_pred             chhhhhhhhhhhh------hh--hcccccccccCCcccccchHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHhcCchHH
Confidence            1     2233332      11  123457899999999997665555555666777776655543334667777775444


Q ss_pred             H
Q 017272          307 T  307 (374)
Q Consensus       307 r  307 (374)
                      +
T Consensus       194 ~  194 (208)
T KOG4142|consen  194 E  194 (208)
T ss_pred             H
Confidence            3

>PLN02392 probable steroid reductase DET2

Probab=87.87  E-value=0.72  Score=45.33  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             cccccccccchhHHH-HHHHHHHHHhhhccHHHHHHHHHHHHHHHHhhhhhhcHHHHHhcHhHHHHHhhcCCCcch
Q 017272          252 ETGVMRITRHPQMVG-QVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFA  326 (374)
Q Consensus       252 ~tGIyritRHPmylG-~~LWalaHlL~nGdlasLlLfg~llayal~Gi~~eERRL~r~fGe~y~~Y~~~Tp~iPF~  326 (374)
                      ++|+++++-+|=|++ ++.|.. ..+..+++..++++....+....-.....|.-+++|||+|.+  +|-.++||.
T Consensus       187 ~GGlF~~VscPnYf~EileW~g-fal~t~s~~~~~F~~~~~~nl~~rA~~~hkwY~~kFg~~ypk--~RkaiIPfi  259 (260)
T PLN02392        187 RGGWFELVSCPNYFGEIVEWLG-WAVMTWSWAGFGFFLYTCSNLVPRACANHKWYLEKFGEDYPK--GRKAVIPFL  259 (260)
T ss_pred             CCCCcCeEcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccC--CCeEecCcc
Confidence            579999999999999 455644 333444444444222222222222233344458888887654  444578873

>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1

Probab=82.80  E-value=11  Score=33.43  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             cccccccccccchhHHH-HHHHHHHHHhhhccHHHHHHHHHHHHHHHHhhhhhhcHHHHHhcHhHHHHH-hhcCCCcc
Q 017272          250 LWETGVMRITRHPQMVG-QVIWCLAHTLWIGNSVAAAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVK-RRTSVIPF  325 (374)
Q Consensus       250 Lv~tGIyritRHPmylG-~~LWalaHlL~nGdlasLlLfg~llayal~Gi~~eERRL~r~fGe~y~~Y~-~~Tp~iPF  325 (374)
                      +.+.|.++++..|-|++ ++.|..-.++. ++....+++...+.....-.....|.-+++|    ++|. +|-.++||
T Consensus        76 iP~gg~F~~vscP~Y~~Eil~w~~f~l~~-~~~~~~~f~~~~~~~l~~~A~~~h~wY~~~F----~~yp~~R~~lIPf  148 (150)
T PF02544_consen   76 IPKGGLFEYVSCPHYFFEILIWIGFALLT-GSWPSYAFALFVVVNLSPRAVQTHRWYKKKF----KEYPKNRKALIPF  148 (150)
T ss_pred             CCCCCCcceeeehhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHC----ccccCCCeEecCc
Confidence            44579999999999999 56786655443 4554444333222222222222233345555    3444 34457776

3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	2e-05

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 21/185 (11%), Positives = 53/185 (28%), Gaps = 5/185 (2%)

Query: 146 VMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQ 205
           +  +++ I       +   R M  K           + V L       +         + 
Sbjct: 8   ICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLD 67

Query: 206 LWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNL---LEVAAVDEPKMHLWETGVMRITRHP 262
            + +     +     + +F++         +L          +    L + G+ +  RHP
Sbjct: 68  SFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHP 127

Query: 263 QMVGQVIWCLAHTLWIGNSVAAAASLGLIGH-HLFGVWNGDKRLATRYGEAFEAVKRRTS 321
                 +W +   + + N V     +      +   V   ++ L   +G+ +     +T 
Sbjct: 128 MYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTG 187

Query: 322 V-IPF 325
              P 
Sbjct: 188 RLFPK 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	99.66

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}

Probab=99.66  E-value=5.4e-16  Score=141.60  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=68.6

Q ss_pred             CccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHH-HHHHHHHHHHhhhhhhcHHHHHhcHhHHHHHhhcC-CC
Q 017272          246 PKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAA-SLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTS-VI  323 (374)
Q Consensus       246 P~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlL-fg~llayal~Gi~~eERRL~r~fGe~y~~Y~~~Tp-~i  323 (374)
                      ++.+++++|+||++|||+|+|.++|.++..+..++...+++ ...++.....++..|||+++++||++|++|+++|| ++
T Consensus       111 ~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~i  190 (194)
T 4a2n_B          111 DGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLF  190 (194)
T ss_dssp             TTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCBSSS
T ss_pred             CCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCCeeC
Confidence            34589999999999999999999999999999999887764 33444455788999999999999999999999997 67


Q ss_pred             cc
Q 017272          324 PF  325 (374)
Q Consensus       324 PF  325 (374)
                      |+
T Consensus       191 P~  192 (194)
T 4a2n_B          191 PK  192 (194)
T ss_dssp             CC
T ss_pred             ce
Confidence            75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d2nwwa1	405	f.49.1.1 (A:12-416) Proton glutamate symport prote	0.002

>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Length = 405

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 108 VILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSD--SHEVVMLVLILIFATVHSGLASLR 165
           +++G++L  + +  I    GY  A    V    D     + MLV+ ++FA++  G AS+ 
Sbjct: 5   ILIGLILGAI-VGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASIS 63

Query: 166 DMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFV 225
                 +G +         +  + +  I+  + +   G+ L         HQ   L   +
Sbjct: 64  PARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHIL 123

Query: 226 SFFF 229
               
Sbjct: 124 LDIV 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00