Citrus Sinensis ID: 017298

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msrapvdhstslsRTFKYLLATQflsrgipfvfnSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAdikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNEL
Flexible Loop (DISEMBL)
msrapvdhstslsRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Low Complexity Region (SEG)
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Disordered region (IsUnstruct)
*************RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM***
Disordered Region (DISOPRED)
****************KYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM**************AAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA***************NSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Disordered Region (DISEMBL)
**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Disordered Region (DISPRO)
*********TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIK*****REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q54IV7	540	Protein RFT1 homolog OS=D	yes	no	0.927	0.642	0.338	9e-50
Q0D2E8	539	Protein RFT1 homolog OS=X	yes	no	0.919	0.638	0.351	6e-43
Q96AA3	541	Protein RFT1 homolog OS=H	yes	no	0.906	0.626	0.313	3e-34
Q8C3B8	541	Protein RFT1 homolog OS=M	yes	no	0.906	0.626	0.321	1e-32
Q6FPE8	551	Oligosaccharide transloca	yes	no	0.951	0.646	0.295	6e-28
Q9Y123	556	Protein RFT1 homolog OS=D	yes	no	0.917	0.616	0.284	2e-26
P38206	574	Oligosaccharide transloca	yes	no	0.911	0.594	0.268	5e-26
P40913	556	Oligosaccharide transloca	yes	no	0.954	0.642	0.255	7e-25
O94302	527	Oligosaccharide transloca	yes	no	0.901	0.639	0.269	8e-25
Q754Q7	552	Oligosaccharide transloca	yes	no	0.935	0.634	0.287	3e-24

>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1

 Score =  197 bits (502), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 212/399 (53%), Gaps = 52/399 (13%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct: 20  YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query: 78  KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
             D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct: 80  T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query: 135 ACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
           + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F  +Q
Sbjct: 138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query: 194 VAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQLANMC 238
           + Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L  + 
Sbjct: 195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNLIKLS 251

Query: 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 298
            L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F 
Sbjct: 252 LLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFP 311

Query: 299 R-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333
           +                           +       K   N L   +K ++L+ LVF  F
Sbjct: 312 KLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSLVFTCF 371

Query: 334 GPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
           GP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+N
Sbjct: 372 GPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAIN 410

May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1

 Score =  175 bits (443), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 209/390 (53%), Gaps = 46/390 (11%)

Query: 13  SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC 72
           ++   Y +  Q L R + F  N++ +R++++    I  V+  LF T V+FL+RE FRRAC
Sbjct: 11  TKLASYSVILQILFRVLTFALNAFTLRYVSKEIIGIVNVRLTLFYTTVVFLAREAFRRAC 70

Query: 73  MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACF-FVL---WWQGLSYSNP---- 124
           +         S +++    + + WL +PLGI      C+ F+L   W Q L    P    
Sbjct: 71  L-------SHSAQQSWRHTIHLTWLAVPLGI------CWSFILGWIWLQILEVPEPEAIP 117

Query: 125 -YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIV--KQY 181
            Y   ++  GF+ V+ELLAEP ++L+Q  L ++L++V E++A   RC    IL++   Q+
Sbjct: 118 YYNIGVWAFGFSAVVELLAEPFWVLAQAHLFVKLKVVAESLAIIIRCSVTVILVLLCPQW 177

Query: 182 EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY----------- 230
            +   ++F+L+QV Y ++L L Y  YF  F     ++  PF L  M  +           
Sbjct: 178 GL---LIFSLAQVLYTSALALCYIAYFARFLGSLEAEKKPFPLRRMREFLPRFSSSQAFL 234

Query: 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLP 288
           D + A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R +FLP
Sbjct: 235 DWKQAWLAWSFFKQSFLKQILTEGERYVMTFLNVLSFGDQGVYDIVNNLGSLVARFIFLP 294

Query: 289 FEESSYATFARS-ASGQYPQKSKKIGNSLAEA-----LKLVLLIGLVFMAFGPSYSYSLV 342
            EES Y  FA+    G+  Q  +K   S+A       LKLV LIGLV +AFG +YS+  +
Sbjct: 295 IEESFYVFFAKVLERGKKVQSQRKEEISMASEVLESLLKLVTLIGLVIIAFGYAYSHLAL 354

Query: 343 RLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
            +  G   S G     LR YCLYV++LA+N
Sbjct: 355 DIYGGSMLSGGSGPVLLRCYCLYVLLLAIN 384

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Xenopus tropicalis (taxid: 8364)

>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 192/376 (51%), Gaps = 37/376 (9%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+    + D +
Sbjct: 21  QVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSGGTQRDWS 80

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGFACV 137
                  + L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G + V
Sbjct: 81  -------QTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFGLSAV 131

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVAY 196
           +ELL EP ++L+Q  + ++L+++ E+++   +      L++  +    G+ +F+L+Q+ Y
Sbjct: 132 VELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQLFY 189

Query: 197 AASLFLGYWGYFL-LFGA-----------FKTSDLFPFRLGNMMSYDKQLANMCTLFTFQ 244
              L L Y  YF  L G+            + +DL P    N    + + A +   F  Q
Sbjct: 190 TTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWSFFKQ 249

Query: 245 SFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS-A 301
           SF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+   
Sbjct: 250 SFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAKVLE 309

Query: 302 SGQYPQKSKKIGNSLAEALKLVLLIGL-----VFMAFGPSYSYSLVRLLYGKKWSDGEAS 356
            G+     K+   ++A A+   LL            FG +YS   + +  G   S G   
Sbjct: 310 RGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGGTMLSSGSGP 369

Query: 357 TALRYYCLYVVVLAMN 372
             LR YCLYV++LA+N
Sbjct: 370 VLLRSYCLYVLLLAIN 385

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Homo sapiens (taxid: 9606)

>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 37/376 (9%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R I FV N++I+R L++    I  V+  L  +   FL+RE FRRAC+       GA
Sbjct: 21  QVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTTFLAREAFRRACLSG-----GA 75

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGFACV 137
            R+ +  + L + WLT+PLGIF +  +C   +W Q L   +P     Y   +   G + V
Sbjct: 76  QRDWS--QTLNLLWLTVPLGIFWS--SCLGWVWLQLLEVPDPDVVPYYGTGVLFFGLSAV 131

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVAY 196
           +ELL EP ++L+Q  + ++L+++ E+++   R     +L++  +    G+ +F+L+Q+ Y
Sbjct: 132 VELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLAQLLY 189

Query: 197 AASLFLGYWGYF------------LLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQ 244
              L L Y  Y             L     + + L P    +    + + A +   F  Q
Sbjct: 190 TTVLVLCYAIYLIQLLRSPESAKQLTLPVSRVTQLLPSISRSRAFVNWKEAGLAWSFFKQ 249

Query: 245 SFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS 302
           SF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+   
Sbjct: 250 SFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEESFYLFFAKVLE 309

Query: 303 GQYP---QKSKKIGNSLA---EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEAS 356
            +     QK   +  + A     LKL LL GL    FG +YS   + +  G   S G   
Sbjct: 310 REKDASLQKQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIYGGAMLSSGSGP 369

Query: 357 TALRYYCLYVVVLAMN 372
             +R YCLYV++LA+N
Sbjct: 370 VLMRCYCLYVLLLAIN 385

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Mus musculus (taxid: 10090)

>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 195/416 (46%), Gaps = 60/416 (14%)

Query: 1   MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCV 60
           MS A +   T+   TF  L+  Q  S+ + F+ N+ +VR+L+   + I A      V  V
Sbjct: 1   MSGADILEKTTRGATF--LMMGQLFSKIVTFLLNNTLVRYLSPRIFGITAF-LEFIVGTV 57

Query: 61  LFLSREGFRRACMRADIKCDGASREENAAKL---------LKVAWLTLPLGIFITIGACF 111
           LF SRE  R +  R     DG   + +             +  A + L +GI ++IG   
Sbjct: 58  LFFSREAIRLSTQRI---ADGNDADNDHDHDRDDSALQVCVNFAMIPLFIGIPLSIG--- 111

Query: 112 FVLWWQ-----GLSYSNPYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165
            ++ WQ     G   + P+ Q ++F      +LEL+ EPL++L+Q+ L    R   E++A
Sbjct: 112 -LIAWQYHNINGYFVTLPFFQWSVFAIWVGIILELVNEPLFVLNQHFLNYGARSRYESIA 170

Query: 166 TFSRC---FTMCI-----LIVKQY-----EMEKGIV---FALSQVAYAASLFLGYWGYFL 209
             + C   FT+       LI+  Y        +GI    FAL ++AYAA+L + Y+  +L
Sbjct: 171 VTANCLVNFTVVYSYEKKLILTSYFDDSERFREGIAILAFALGKLAYAATLLMCYYYNYL 230

Query: 210 LFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS-----FRKL--------LLQEGEK 256
           +   FK++   PF+L   +   K   N    + F+S     F+K+        LL EG+K
Sbjct: 231 M--NFKSNK--PFKLS--LQKIKSKVNEKQTYYFRSDILEHFKKVYFQLCFKHLLTEGDK 284

Query: 257 LVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316
           L++    T   Q +Y L+   GSL+ R++F P EES     A   S +  +  +     L
Sbjct: 285 LIINTFCTVEEQGIYSLLSNYGSLITRLLFAPIEESLRLLLAVLLSKKDSKNLQLSMKVL 344

Query: 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
               K  L + L+ M FGP+ S  L++ L G KWS      A+R YC+Y+  L+ N
Sbjct: 345 VNLTKFYLYLSLLVMIFGPNNSSYLLQFLIGSKWSTNSVLHAIRVYCVYIPFLSFN 400

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 61/404 (15%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R + F  N++IVRH+      I  V+  L  + +LFLSRE   RA + A+ +    
Sbjct: 20  QILCRILTFGINAYIVRHVGREVLGIMNVRLLLLESTLLFLSREAINRAALSANAQ---Q 76

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS-----YSNPYAQAIFINGFACV 137
               + A+L+   WLT+P+   +    C ++ W   LS     Y++ Y  A +   F+CV
Sbjct: 77  GDRCSWAQLINQMWLTVPI-CAVLCAPCLYI-WLNWLSAVDAIYASQYEFACYAVAFSCV 134

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYA 197
           LEL+AE    ++Q    ++L++++ T+    R   + + IV          FA++Q++ A
Sbjct: 135 LELMAESAVFVAQVFCFVKLKILLNTLHILVRS-AIFLWIVTGDRSAAINAFAIAQLSSA 193

Query: 198 ASLFLGYWGYFLLF------------------------GAFKTSDLFPFRL--------- 224
            ++ LG +G+F  +                          ++  D FPF+          
Sbjct: 194 VTIVLGQYGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLPGVM 253

Query: 225 --GNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY----NQAVYGLVDKLG 278
              N   ++++L  +   F  Q   K +L EGEK V+    +P      QA Y +V+ LG
Sbjct: 254 FNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMS--VSPVLSFGEQATYDVVNNLG 311

Query: 279 SLVVRMVFLPFEESSYATFARSAS-----GQYPQKSKKIGNSLAEALKL-VLLIGLVFMA 332
           S+  R +F P E+SSY  F ++ S      + PQ+  +  +S+   L L V  IGL+   
Sbjct: 312 SMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQASSVLNNLLLGVSSIGLIAFT 371

Query: 333 FGPSYSYSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNEL 374
           FG SYSY  V LLYG     + G   + L+++CL + +LA+N +
Sbjct: 372 FGQSYSYP-VLLLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGI 414

May be involved in N-linked oligosaccharide assembly.

Drosophila melanogaster (taxid: 7227)

>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 182/413 (44%), Gaps = 72/413 (17%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVT-CVLFLSREGFRRACMRAD 76
           +L+  Q  ++ + F+ N+ ++R L+   + I A  F  F+   VLF SR+  R + +R  
Sbjct: 25  FLMMGQLFTKLVTFILNNLLIRFLSPRIFGITA--FLEFIQGTVLFFSRDAIRLSTLRIS 82

Query: 77  IKCDGA---------SREENAAKLLKVA--------WLTLPLGI------FITIGACFFV 113
              +G                +K+L+ A        W+  PL I      +  I A F  
Sbjct: 83  DSGNGIIDDDDEEEYQETHYKSKVLQTAVNFAYIPFWIGFPLSIGLIAWQYRNINAYFIT 142

Query: 114 LWWQGLSYSNPYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFT 172
           L         P+ + +IF+   + ++ELL+EP +I++Q +L    R   E++A  + C  
Sbjct: 143 L---------PFFRWSIFLIWLSIIVELLSEPFFIVNQFMLNYAARSRFESIAVTTGCIV 193

Query: 173 MCILI--VKQYEMEKGIV-------------FALSQVAYAASLFLGY-WGYFLLFGAFKT 216
             I++  V+Q     G+V             FAL ++A++ +L   Y W Y      FK 
Sbjct: 194 NFIVVYAVQQSRYPMGVVTSDIDKEGIAILAFALGKLAHSITLLACYYWDYL---KNFKP 250

Query: 217 SDLFPFRLGNMMS---------YDKQLANMCTLFTFQSFRKL--------LLQEGEKLVL 259
             LF  RL  + +         Y K  +        Q F+K+        LL EG+KL++
Sbjct: 251 KKLFSTRLTKIKTRENNELKKGYPKSTSYFFQNDILQHFKKVYFQLCFKHLLTEGDKLII 310

Query: 260 VWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319
             L T   Q +Y L+   GSL+ R++F P EES     AR  S   P+  K     L   
Sbjct: 311 NSLCTVEEQGIYALLSNYGSLLTRLLFAPIEESLRLFLARLLSSHNPKNLKLSIEVLVNL 370

Query: 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
            +  + + L+ + FGP+ S  L++ L G KWS       +R YC Y+  L++N
Sbjct: 371 TRFYIYLSLMIIVFGPANSSFLLQFLIGSKWSTTSVLDTIRVYCFYIPFLSLN 423

Involved in N-linked oligosaccharide assembly. Required for the translocation of Man(5)GlcNAc(2)-PP-dolichol from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 183/407 (44%), Gaps = 50/407 (12%)

Query: 7   DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSRE 66
           +H    +    +L+  Q LS+G+ F+ N+ +VR+L+   + I +      ++ VLF SRE
Sbjct: 6   EHMNKFANGVLFLMLGQTLSKGVNFLLNTLLVRYLSPRIFGITSF-LEFLLSTVLFFSRE 64

Query: 67  GFRRACMRADIKCDGASREE--------NAAKLLKVAWLTLPLGIFITIGACFFVLWWQG 118
             R + +R     D    E+            L+   ++   +G+ ++I     ++ WQ 
Sbjct: 65  SIRISTLRIKSTTDSGKLEKVEDGEDTRTLQSLINFGYIPFVIGLPLSI----ILISWQ- 119

Query: 119 LSYSN--------PYAQA-IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR 169
             YSN        PY +A IF+   + ++EL++EP Y++ Q LL   +R   E++     
Sbjct: 120 --YSNLNSYFIDLPYFKASIFLIWLSILIELVSEPFYLVHQYLLNHFIRSKYESLGVTFA 177

Query: 170 CFTMCILIVKQYEMEKGI----------------VFALSQVAYAASLFLGYWGYFLLFGA 213
           C    I++V   +M  G+                 FA+ ++ +A +L L  + Y      
Sbjct: 178 CVANFIIVVWFEKMVNGVGLELHDDYKQEGIAIFAFAVGKLVHAMTL-LACYSYNYYSEV 236

Query: 214 FKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL--------LLQEGEKLVLVWLDTP 265
           + T + + ++L  +    +Q +      T Q F+K+        LL EG+KL++  L T 
Sbjct: 237 YTTGERYSYKLTKIRPETRQESYYFQNDTVQHFKKVYFQLCFKHLLTEGDKLIINSLCTV 296

Query: 266 YNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325
             Q +Y L+   GSL+ R++F P EE+     AR  S    +        L +  K  L 
Sbjct: 297 EEQGIYSLLSNYGSLITRLLFAPIEEALRLFLARLLSVSSKKNLWLSMKVLIDLTKFYLY 356

Query: 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
           + L  + FGP  S  L++ + G KWS       +R YC Y+  L++N
Sbjct: 357 LSLFIIIFGPINSSYLLKFVIGSKWSSTSFLETIRTYCFYIPFLSLN 403

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 169/364 (46%), Gaps = 27/364 (7%)

Query: 26  SRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMR---ADIKCDGA 82
           SR + F  N   +R  + + YA  ++ F +  + +LFLSRE  R A  R    +      
Sbjct: 25  SRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRLAMQRIPSENAIITST 84

Query: 83  SREENAAKLL--------KVAWLTLPLGIFITIGACFFVLWWQGLSYSN-PYAQA-IFIN 132
           S E N +K L          + +++ +GI I++    F  +    S  N PY++  IFI 
Sbjct: 85  STESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFY----SLPNFPYSKTCIFIY 140

Query: 133 GFACVLELLAEPLYILSQNLLLLRLRLVVETVATF-SRCFTMCILIVKQYEMEKGIVFAL 191
             +  +ELL+EP Y + Q           E + T      +  I ++ + +    + FAL
Sbjct: 141 TVSSFIELLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGRNKAPSSLPFAL 200

Query: 192 SQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY---DKQLANMCTLFTFQSFRK 248
             ++   ++F     + L + A +   +F  ++G    Y   D     +    T+Q   K
Sbjct: 201 GNLSEKVTIF-----FTLRYFAKQPFSIFLHKVGENERYIFWDSSTLRIICSHTYQVLLK 255

Query: 249 LLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 308
            L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E+ S+  FA+    +  + 
Sbjct: 256 HLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVEDHSHIVFAQLTHYKNKKD 315

Query: 309 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVV 368
            KK  N LA  LKL   + L F+ FG +YS  ++    G KW+  ++S+ L +Y +Y+  
Sbjct: 316 EKKALNLLAWILKLYSYMSL-FILFGSNYSDIVLLFGAGSKWASPDSSSILSWYAMYIPF 374

Query: 369 LAMN 372
           +A N
Sbjct: 375 MAAN 378

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 174/386 (45%), Gaps = 36/386 (9%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           +L+  Q   + + FV ++ +VR L+   + I +       + VLF SRE  R A +R   
Sbjct: 18  FLMMGQLFGKLVTFVLHNVLVRFLSPRIFGITSF-LDFLSSTVLFFSREAIRLATLRIKT 76

Query: 78  KCDGASREENAAKL-LKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ------AIF 130
             DG    E +A+L   V +  +P+ I   +     V  WQ  + ++ + Q      +I+
Sbjct: 77  GGDGGRGGEMSAELQTAVNFANIPMCIGAPLAVVLAV--WQYSNLNSYFTQLPFFSWSIY 134

Query: 131 INGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILI------------- 177
           +   + + EL +EPLY+++Q +L  R R   E  A  + C     +I             
Sbjct: 135 LVLLSILAELASEPLYVVNQFMLNYRKRSQFEGAAVAASCLVNFAVIYWYENWVNGRGET 194

Query: 178 VKQYEMEKGIV---FALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL------GNMM 228
           V     ++GI    FAL +VA A +L   Y+  ++   A +   LF   L      G++ 
Sbjct: 195 VHDSYKQEGIAVLAFALGKVARAMTLLALYYVDYVRHLAHE--KLFSLSLTKVRVPGSVY 252

Query: 229 S--YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVF 286
           +  +D  +        FQ   K LL EG+KL++  L T   Q +Y L+   GSL+ RMVF
Sbjct: 253 TAYFDSDVLQHFKKVYFQLCFKHLLTEGDKLIINSLCTVEEQGIYSLLSNYGSLITRMVF 312

Query: 287 LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 346
            P EES      R  S +  Q        L   +K  L + LV + FGP+ S  L++ L 
Sbjct: 313 APIEESLLLFLTRLLSDKTQQNLHICMRVLVNLVKFYLYLALVIVIFGPTNSSFLLKFLI 372

Query: 347 GKKWSDGEASTALRYYCLYVVVLAMN 372
           G KWS       +R YC Y+  L+MN
Sbjct: 373 GSKWSSTSVLETIRVYCFYLPFLSMN 398

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
356531685	518	PREDICTED: protein RFT1 homolog [Glycine	0.973	0.702	0.780	1e-168
255539823	436	Oligosaccharide translocation protein rf	0.994	0.853	0.780	1e-166
356544271	518	PREDICTED: LOW QUALITY PROTEIN: protein	0.973	0.702	0.761	1e-164
449458359	528	PREDICTED: protein RFT1 homolog [Cucumis	0.983	0.696	0.769	1e-162
334187490	611	lipid transporter [Arabidopsis thaliana]	0.978	0.599	0.740	1e-161
224138472	476	predicted protein [Populus trichocarpa]	0.868	0.682	0.806	1e-149
38260621	481	nuclear division RFT1-like protein [Sisy	0.868	0.675	0.779	1e-147
38260690	478	nuclear division RFT1-like protein [Arab	0.868	0.679	0.756	1e-144
38260636	478	nuclear division RFT1-like protein [Arab	0.868	0.679	0.756	1e-144
297806793	478	hypothetical protein ARALYDRAFT_325378 [	0.868	0.679	0.756	1e-144

>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/365 (78%), Positives = 320/365 (87%), Gaps = 1/365 (0%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG+S  +   KL+KV W++ PLGIFITI  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGSSMGD-VVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT SRC TM  LIVKQ  MEK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVV 367
           KSKK+GNSL E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+
Sbjct: 305 KSKKLGNSLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVI 364

Query: 368 VLAMN 372
           VLAMN
Sbjct: 365 VLAMN 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539823|ref|XP_002510976.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] gi|223550091|gb|EEF51578.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/378 (78%), Positives = 324/378 (85%), Gaps = 6/378 (1%)

Query: 1   MSRAPV------DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFH 54
           MS A V          + SRTFKYLLATQFLSRGIPF+FNSWI+RHLTE DYAIYAVQFH
Sbjct: 1   MSNASVVQPQAESSDANFSRTFKYLLATQFLSRGIPFIFNSWIIRHLTEQDYAIYAVQFH 60

Query: 55  LFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVL 114
           LFVTCVLFLSREGFRRACMRA++K DG S E  A KLLKVAW+TLPLGI IT  AC FV 
Sbjct: 61  LFVTCVLFLSREGFRRACMRAEVKSDGTSSEAYALKLLKVAWMTLPLGIVITFAACIFVF 120

Query: 115 WWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMC 174
           WWQGL+ ++ YAQAI IN  AC+LELLAEPLYILSQNLLLL+LRL+ ETVAT  RC TM 
Sbjct: 121 WWQGLNLNDSYAQAILINACACILELLAEPLYILSQNLLLLKLRLMAETVATLLRCLTMY 180

Query: 175 ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL 234
           ILIV+Q  MEK IVFALSQ AY A LF+GYW YFLLF +F +S+LFPFRLG +M YDKQL
Sbjct: 181 ILIVRQPGMEKDIVFALSQTAYGACLFIGYWSYFLLFCSFGSSELFPFRLGTIMDYDKQL 240

Query: 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 294
            NMC LFT QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY
Sbjct: 241 CNMCMLFTLQSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSY 300

Query: 295 ATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE 354
           ATFARSASGQ+P+K +K+G  L EALKLVLLIGLVFMAFGPSYSYSL+RLLYG KWSDGE
Sbjct: 301 ATFARSASGQHPEKRRKLGGYLTEALKLVLLIGLVFMAFGPSYSYSLIRLLYGNKWSDGE 360

Query: 355 ASTALRYYCLYVVVLAMN 372
           ASTAL+YYCLY++VLAMN
Sbjct: 361 ASTALQYYCLYIIVLAMN 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/365 (76%), Positives = 316/365 (86%), Gaps = 1/365 (0%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG S  +   KL+KV W++ PLGIFIT+  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGTSMGD-VVKLMKVVWMSFPLGIFITVVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT S C TM  LIVKQ  +EK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSWCLTMYFLIVKQTGIEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G ++ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKVIDFDRQLSKMCMLFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDK GSLVVR+VFLPFEESSYATFARS SGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKFGSLVVRLVFLPFEESSYATFARSTSGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVV 367
           KSKK+GN + E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+
Sbjct: 305 KSKKLGNGVTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVI 364

Query: 368 VLAMN 372
           VLAMN
Sbjct: 365 VLAMN 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/369 (76%), Positives = 326/369 (88%), Gaps = 1/369 (0%)

Query: 4   APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL 63
           A  + +T+LSRTF+YL+ATQFLSRGIPF+FN WIVRHLTE DYA+YAVQFHLFVTCVLFL
Sbjct: 13  ATDNDATNLSRTFRYLMATQFLSRGIPFIFNLWIVRHLTEEDYAVYAVQFHLFVTCVLFL 72

Query: 64  SREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSN 123
           SREGFRRACMRA++  D  S EEN+ +LLKVAWL+ PLG+FIT+ AC  VLWW+ +  SN
Sbjct: 73  SREGFRRACMRAELS-DSTSVEENSRRLLKVAWLSFPLGLFITLAACNLVLWWRNIPLSN 131

Query: 124 PYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEM 183
           PYAQAI ING AC+LELLAEPLYILSQ LLLL+LRL+VET+ATFSRC TM IL+V+   M
Sbjct: 132 PYAQAILINGCACILELLAEPLYILSQTLLLLKLRLLVETMATFSRCMTMYILLVRGSNM 191

Query: 184 EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
           EKGI+FALSQ AY A LFLGYW YFL F AFK SDLFPFR+GNM  +DK+L+NMC LFT 
Sbjct: 192 EKGIIFALSQSAYGACLFLGYWVYFLNFRAFKWSDLFPFRVGNMKDFDKKLSNMCILFTL 251

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASG
Sbjct: 252 QSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYTTFARSASG 311

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 363
           +YP K++K+   L+EALKLV+LIGL+FMAFGPSYSY+L+RLLYG+KWSDGEA TALRYYC
Sbjct: 312 EYPDKTRKLAICLSEALKLVVLIGLIFMAFGPSYSYALIRLLYGQKWSDGEAPTALRYYC 371

Query: 364 LYVVVLAMN 372
           LY++VLAMN
Sbjct: 372 LYIIVLAMN 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/366 (74%), Positives = 316/366 (86%)

Query: 7   DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSRE 66
           D++ +LSR FK+ L+ QF+SR IPFVFNSWIVRHLTE DYA+YA+QFHLFVTCVLFLSRE
Sbjct: 95  DNNVNLSRIFKFSLSRQFISRSIPFVFNSWIVRHLTERDYALYAIQFHLFVTCVLFLSRE 154

Query: 67  GFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYA 126
           GFRRAC+RA  K DG   EEN  ++LKVAW+T+PLGI ITI AC FVLWWQ LSYS+PYA
Sbjct: 155 GFRRACLRAGTKRDGPESEENVTRILKVAWVTVPLGIAITIAACIFVLWWQNLSYSDPYA 214

Query: 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG 186
           QAI+I+GFACVLEL+AEPLYILSQ LL L+LRL+VETVAT +RC T+  L+V Q  MEK 
Sbjct: 215 QAIWIHGFACVLELMAEPLYILSQTLLKLQLRLIVETVATLARCVTLYSLLVMQTNMEKV 274

Query: 187 IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSF 246
           I+FALSQVAY  SLF+GYW YFL+ G +++S+LFPFR GN M +D  L+ MC LFTFQSF
Sbjct: 275 IIFALSQVAYGGSLFIGYWAYFLICGVYRSSNLFPFRPGNFMDFDNDLSKMCKLFTFQSF 334

Query: 247 RKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYP 306
           RKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLGSLVVRMVFLPFEESSY  FAR ASG Y 
Sbjct: 335 RKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGSLVVRMVFLPFEESSYTIFARFASGDYQ 394

Query: 307 QKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV 366
           +++KK+G  L  ALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY+
Sbjct: 395 ERNKKLGIYLTVALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYI 454

Query: 367 VVLAMN 372
           +VLAMN
Sbjct: 455 IVLAMN 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 292/325 (89%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRACMRADIKCDGAS EE AAKLLKVAW+TLPLG+  TI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASTEEYAAKLLKVAWITLPLGVVTTI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FV WWQGL+YS+PYAQAI ING AC+LELLAEPLYI+SQNLLLL+LRL+VET AT 
Sbjct: 63  SACVFVFWWQGLTYSDPYAQAILINGCACILELLAEPLYIVSQNLLLLKLRLIVETAATL 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
            RC TM ILIVKQ  M+KGIVFALSQ AY A LFLGYW YF+LF AF++S LFPFRLG +
Sbjct: 123 LRCLTMYILIVKQTSMDKGIVFALSQTAYGACLFLGYWSYFVLFRAFRSSVLFPFRLGTI 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M YDKQL++MC LFT QSF+KL+LQEGEK VLVWLDTPYNQAVYGLVDKLG LVVR+VFL
Sbjct: 183 MDYDKQLSSMCVLFTLQSFQKLILQEGEKFVLVWLDTPYNQAVYGLVDKLGILVVRLVFL 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 347
           PFEESSYATFARSASG+ P KS+K+G+ L+EALKLVLLIG+VFM FGPSYSYSL+R+LYG
Sbjct: 243 PFEESSYATFARSASGKDPNKSRKLGSCLSEALKLVLLIGVVFMTFGPSYSYSLIRMLYG 302

Query: 348 KKWSDGEASTALRYYCLYVVVLAMN 372
           +KWSDGEASTAL+YYC YV+VLAMN
Sbjct: 303 RKWSDGEASTALQYYCFYVIVLAMN 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/326 (77%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RADI  DG   E +  KLLKVAW+TLPLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRADINSDGRVSEMDVTKLLKVAWVTLPLGIVITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FV WWQ LSYS+ YAQAI I+GF+CVLEL+AEPLYILSQ L+LL+LRLVVETVATF
Sbjct: 63  AACIFVFWWQNLSYSDTYAQAILIHGFSCVLELMAEPLYILSQTLMLLKLRLVVETVATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           SRC T+C LIVKQ  MEKGI+FALSQVAY  SLFLGYW YFL+ G FK+ +LFPFR GN 
Sbjct: 123 SRCVTLCFLIVKQTNMEKGIIFALSQVAYGGSLFLGYWAYFLVRGIFKSLNLFPFRRGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +DK L++MC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFL
Sbjct: 183 MDFDKPLSSMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFL 242

Query: 288 PFEESSYATFARSASG-QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 346
           PFEESSY TFAR ASG  Y QK K++G  L EALKLV+LIGLVFMAFGP YSYSL+RLLY
Sbjct: 243 PFEESSYTTFARFASGDDYQQKRKRLGICLTEALKLVMLIGLVFMAFGPGYSYSLIRLLY 302

Query: 347 GKKWSDGEASTALRYYCLYVVVLAMN 372
           G+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 303 GEKWSDGEASVALQFYCLYIIVLAMN 328

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/325 (75%), Positives = 280/325 (86%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACLLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN 
Sbjct: 123 ARCLTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLISGALRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 347
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYG 302

Query: 348 KKWSDGEASTALRYYCLYVVVLAMN 372
           +KWSDGEAS AL++YCLY++VLAMN
Sbjct: 303 EKWSDGEASLALQFYCLYIIVLAMN 327

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/325 (75%), Positives = 280/325 (86%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACLLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN 
Sbjct: 123 ARCLTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWTYFLISGALRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 347
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYG 302

Query: 348 KKWSDGEASTALRYYCLYVVVLAMN 372
           +KWSDGEAS AL++YCLY++VLAMN
Sbjct: 303 EKWSDGEASLALQFYCLYIIVLAMN 327

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/325 (75%), Positives = 279/325 (85%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWVTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFACVLEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACVLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ G  ++SDLFPFR GN 
Sbjct: 123 ARCVTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLICGVLRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 347
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYG 302

Query: 348 KKWSDGEASTALRYYCLYVVVLAMN 372
           +KWSDGEAS AL++YCLY++VLAMN
Sbjct: 303 EKWSDGEASLALQFYCLYIIVLAMN 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
DICTYBASE|DDB_G0288491	540	rft1 "RFT1 family protein" [Di	0.740	0.512	0.322	1.3e-45
ZFIN|ZDB-GENE-110411-126	540	rft1 "RFT1 homolog (S. cerevis	0.941	0.651	0.310	2.4e-37
UNIPROTKB|E1BNC6	541	RFT1 "Uncharacterized protein"	0.914	0.632	0.306	9.2e-36
UNIPROTKB|Q96AA3	541	RFT1 "Protein RFT1 homolog" [H	0.914	0.632	0.308	1.1e-34
RGD|1562654	541	Rft1 "RFT1 homolog (S. cerevis	0.911	0.630	0.307	1.3e-34
UNIPROTKB|F1P5L5	535	RFT1 "Uncharacterized protein"	0.911	0.637	0.319	1.7e-34
UNIPROTKB|E2RQ01	541	RFT1 "Uncharacterized protein"	0.909	0.628	0.304	3e-34
MGI|MGI:3607791	541	Rft1 "RFT1 homolog (S. cerevis	0.366	0.253	0.394	1.6e-32
POMBASE|SPBC887.19	527	rft1 "Man5GlcNac2-PP-Dol trans	0.951	0.675	0.261	7.2e-26
UNIPROTKB|C9JP01	292	RFT1 "Protein RFT1 homolog" [H	0.435	0.558	0.3	4.8e-24

DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 361 (132.1 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
 Identities = 96/298 (32%), Positives = 154/298 (51%)

Query:    18 YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
             YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct:    20 YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query:    78 KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
               D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct:    80 T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
             + +LELL+EP+YIL+QN         VE  A F + F+    IV    +  G++ F  +Q
Sbjct:   138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query:   194 VAYAASXXXXXXXXXXXXXXX--KTSDLFPF--------RLGNMMS--YDKQLANMCTLF 241
             + Y+ +                 K  D   F        +L    S   D+ L  +  L+
Sbjct:   195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFPKFSTRIDRNLIKLSLLY 254

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
             T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F +
Sbjct:   255 TWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFPK 312

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 120/387 (31%), Positives = 198/387 (51%)

Query:    11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
             S S    Y +  Q + R + F+ N++ +R +++    +  V+  L  + ++FLSRE FRR
Sbjct:     9 SASTLASYNVLLQVMFRVLTFLLNAFTLRFVSKELIGVVNVRLMLLYSTLVFLSREAFRR 68

Query:    71 ACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----Y 125
             AC+  +    GA R  N  +++ + WLT PLG     G     +WW  L   +P     Y
Sbjct:    69 ACLSGE----GAGR--NWRQVINLLWLTFPLGC--VWGVLLVCVWWWVLQAPDPDSIPHY 120

Query:   126 AQAIFINGFACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEK 185
               A+ +   A + ELLAEPL++L+          + E++A  ++C    +L+V   +   
Sbjct:   121 VPAVGLFCVAALTELLAEPLWVLAHAHMFVRLKVIAESLAMIAKCLVTVVLVVSAPQW-- 178

Query:   186 GI-VFALSQVAYAASXXXXXXXXXXXXXXXKTSDL--FP-FRLGNMM--SYDKQ-LAN-- 236
             G+ +F+ +Q  Y                  + ++   FP +R+ +++    D + L N  
Sbjct:   179 GLFIFSAAQCVYTGFLLTCYVVYFIHFLGSEEAEKKSFPVYRMTDLLPSKVDHEPLLNWK 238

Query:   237 MCTL-FTF--QSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEE 291
             + TL ++F  QSF K +L EGE+ V+ +L+     +Q VY +++ LGS+V R +FLP EE
Sbjct:   239 LTTLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIINNLGSMVARFLFLPIEE 298

Query:   292 SSYATFARSAS-GQYPQKSKKIGNSLAEA-----LKLVLLIGLVFMAFGPSYSYSLVRLL 345
             S Y  FA+    G+  Q  K+   S+A       LKLVLLIGL+   FG +YS+  + + 
Sbjct:   299 SFYVFFAKVLERGRDVQHQKQEEVSMAAEVLECLLKLVLLIGLIITVFGYAYSHLALDIY 358

Query:   346 YGKKWSDGEASTALRYYCLYVVVLAMN 372
              G+  S+G     LR Y  YV++LA+N
Sbjct:   359 GGELLSNGAGPALLRCYSCYVLLLAIN 385

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 116/379 (30%), Positives = 188/379 (49%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    I  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTIFLAREAFRRACL------ 71

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              GA++ +  ++ L + WLT+PLG+F ++   +  +W Q L   +P     Y   + + GF
Sbjct:    72 SGAAQRD-WSQTLNLLWLTVPLGVFWSLFLGW--VWLQLLEVPDPHVVPHYGTGVVVFGF 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +     +L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTALLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAY------------AASXXXXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLF 241
             + Y            A                 + +DL P    +    + + A +   F
Sbjct:   187 LFYTTLLVLCYVIYFAKVLGSPESAKQQALPVSRMTDLLPSMTRSRAFVNWEEAKLTWSF 246

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
               QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+
Sbjct:   247 FKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLLFQPIEESFYIFFAK 306

Query:   300 SASGQYP---QKSKKIGNS---LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDG 353
                 +     QK + +  +   L   LKL LL GL    FG +YS  ++ +  G   S G
Sbjct:   307 VLEREKDATLQKQEDVAVAAVVLESLLKLALLTGLTITVFGFAYSQLVLDIYGGAMLSSG 366

Query:   354 EASTALRYYCLYVVVLAMN 372
                  LR YCLYV++LA+N
Sbjct:   367 SGPVLLRAYCLYVLLLAIN 385

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 117/379 (30%), Positives = 184/379 (48%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              G  R+ +  + L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G 
Sbjct:    74 -GTQRDWS--QTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAYAASXX------------XXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLF 241
             + Y                              + +DL P    N    + + A +   F
Sbjct:   187 LFYTTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWSF 246

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
               QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+
Sbjct:   247 FKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAK 306

Query:   300 SAS-GQYP--QKSKKIGNSLA---EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDG 353
                 G+    QK + +  + A     LKL LL GL    FG +YS   + +  G   S G
Sbjct:   307 VLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGGTMLSSG 366

Query:   354 EASTALRYYCLYVVVLAMN 372
                  LR YCLYV++LA+N
Sbjct:   367 SGPVLLRSYCLYVLLLAIN 385

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 117/380 (30%), Positives = 182/380 (47%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTIFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              G  R+    + L + WLT+PLGIF ++  C   +W Q L   +P     Y   + + G 
Sbjct:    74 -GTQRDWT--QTLNLLWLTVPLGIFWSL--CLGWVWLQLLEVPDPNVVPYYGTGVLLFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   R     +L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAYAASXX------------XXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLF 241
             + Y A                            K + L P         +   A +   F
Sbjct:   187 LLYTAVLVLCYMLYLIKLLRSPESSKQLTLPISKVTQLLPSISRRKAFVNWNEARLTWSF 246

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
               QSF K +L EGE+ V+ +L+     +Q +Y +V+ LGSLV R++F P EES Y  FA+
Sbjct:   247 FKQSFLKQILTEGERYVMTFLNVLNFGDQGIYDIVNNLGSLVARLIFQPVEESFYIFFAK 306

Query:   300 ------SASGQYPQKSKKIGNSLAEAL-KLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 352
                    AS Q  Q    +  ++ E+L KL LL GL    FG +YS   + +  G   S 
Sbjct:   307 VLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGLTVTVFGFAYSQLALDIYGGAMLSS 365

Query:   353 GEASTALRYYCLYVVVLAMN 372
             G     +R YCLYV++LA+N
Sbjct:   366 GSGPVLMRCYCLYVLLLAVN 385

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 119/373 (31%), Positives = 179/373 (47%)

Query:    23 QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
             Q L R + F  N+  +R+L+     + +V+  L  +  +FL+RE FRRAC+       GA
Sbjct:    17 QVLFRAVTFGLNALTLRYLSRELLGVVSVRLTLLYSTAVFLAREAFRRACLSG-----GA 71

Query:    83 SREENAAKLLKVAWLTLPLGIFIT--IGACFF-VLWWQGLSYSNPYAQAIFINGFACVLE 139
              R  + A  + + WLT+PLG+F +  +G  +  +L     S    Y   +   G + V+E
Sbjct:    72 ER--SWAATINLLWLTVPLGVFWSAFLGFVWLHLLEVPDPSVVPHYRAGVVAFGLSAVVE 129

Query:   140 LLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAAS 199
             LL EP ++L+Q         + E+++  S+C    +L+V  Y      +F+L+Q+ Y + 
Sbjct:   130 LLGEPCWVLAQAHLFVRLKVIAESLSIVSKCILTVVLVVL-YPQWGLYIFSLAQLFYTSV 188

Query:   200 XXXXXXXXXXXXXXXK--TSDLFPFR-----LGNMMSYDKQLAN-----MCTLFTFQSFR 247
                               T   FP       L N+M+ DK   N     +   F  QSF 
Sbjct:   189 LVTCYVVYFAKFLGSPEATKKSFPITRMKALLPNLMA-DKTFLNWKEARLTWSFFKQSFL 247

Query:   248 KLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS-GQ 304
             K +L EGE+ V+ +L+     +Q VY  V+ LGSLV R +FLP EES Y  FA+    G+
Sbjct:   248 KQILTEGERYVMTFLNVINFGDQGVYDAVNNLGSLVARFIFLPIEESFYVFFAQVLERGK 307

Query:   305 YPQKSKK-----IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTAL 359
               +  K+       N L   LKLVLLIGL    FG ++S   + +  G   S G     L
Sbjct:   308 NVKDQKQDDVAMAANVLELLLKLVLLIGLTIAVFGYAFSQLALDIYGGSMLSSGTGPDLL 367

Query:   360 RYYCLYVVVLAMN 372
             R Y LYV+ LA+N
Sbjct:   368 RCYSLYVLFLAVN 380

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 372 (136.0 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 116/381 (30%), Positives = 186/381 (48%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    I  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTIFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              GA R+ +  +   + WLT+PLG+F ++   +  +W   L   +P     Y   + + G 
Sbjct:    74 -GAQRDWS--QTFNLLWLTVPLGVFWSLLLGW--VWLHLLEVPDPNVVPHYGTGVVVFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQTQMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAYAASXX------------XXXXXXXXXXXXXKTSDLFPF--RLGNMMSYDKQLANMCT 239
             + Y A                            + +DL P   R G  +++ +  A +  
Sbjct:   187 LFYTALLVLCYVTYFTKLLGSSESTKQRALPVSRMTDLLPSITRSGAFVNWKE--AKLTW 244

Query:   240 LFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATF 297
              F  QSF K +L EGE+ ++ +L+     +Q VY +V+ LGSLV R++F P EES Y  F
Sbjct:   245 SFFKQSFLKQILTEGERYIMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFF 304

Query:   298 ARSAS-GQYP--QKSKKIGNSLA---EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWS 351
             A+    G+    QK + +  + A     LKL LL GL    FG +YS   + +  G   S
Sbjct:   305 AKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITIFGFAYSQLALDIYGGAMLS 364

Query:   352 DGEASTALRYYCLYVVVLAMN 372
              G     LR YCLYV++LA+N
Sbjct:   365 SGSGPVLLRSYCLYVLLLAIN 385

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 58/147 (39%), Positives = 81/147 (55%)

Query:   235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEES 292
             A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES
Sbjct:   240 AGLAWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEES 299

Query:   293 SYATFAR------SASGQYPQKSKKIGNSLAEAL-KLVLLIGLVFMAFGPSYSYSLVRLL 345
              Y  FA+       AS Q  Q    +  ++ E+L KL LL GL    FG +YS   + + 
Sbjct:   300 FYLFFAKVLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIY 358

Query:   346 YGKKWSDGEASTALRYYCLYVVVLAMN 372
              G   S G     +R YCLYV++LA+N
Sbjct:   359 GGAMLSSGSGPVLMRCYCLYVLLLAIN 385

GO:0003674 "molecular_function" evidence=ND

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPBC887.19 rft1 "Man5GlcNac2-PP-Dol translocation protein Rft1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 298 (110.0 bits), Expect = 7.2e-26, P = 7.2e-26
 Identities = 98/375 (26%), Positives = 167/375 (44%)

Query:    11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
             S S+  +  +  Q  SR + F  N   +R  + + YA  ++ F +  + +LFLSRE  R 
Sbjct:    10 SSSKGLRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRL 69

Query:    71 ACMRADIK---CDGASREENAAKLL----KVAWLTLPLGIFITIGACFFVLWWQGLSYSN 123
             A  R   +       S E N +K L    ++   T  + ++I I     V  +   S  N
Sbjct:    70 AMQRIPSENAIITSTSTESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPN 129

Query:   124 -PYAQA-IFINGFACVLELLAEPLYILSQNXXXXXXXXVVETVATF-SRCFTMCILIVKQ 180
              PY++  IFI   +  +ELL+EP Y + Q           E + T      +  I ++ +
Sbjct:   130 FPYSKTCIFIYTVSSFIELLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGR 189

Query:   181 YEMEKGIVFALSQVAYAASXXXXXXXXXXXXXXXKTSDLFPFRLGNMMSY---DKQLANM 237
              +    + FAL  ++   +               +   +F  ++G    Y   D     +
Sbjct:   190 NKAPSSLPFALGNLSEKVTIFFTLRYFAK-----QPFSIFLHKVGENERYIFWDSSTLRI 244

Query:   238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF 297
                 T+Q   K L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E+ S+  F
Sbjct:   245 ICSHTYQVLLKHLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVEDHSHIVF 304

Query:   298 ARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEAST 357
             A+    +  +  KK  N LA  LKL   + L F+ FG +YS  ++    G KW+  ++S+
Sbjct:   305 AQLTHYKNKKDEKKALNLLAWILKLYSYMSL-FILFGSNYSDIVLLFGAGSKWASPDSSS 363

Query:   358 ALRYYCLYVVVLAMN 372
              L +Y +Y+  +A N
Sbjct:   364 ILSWYAMYIPFMAAN 378

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034203 "glycolipid translocation" evidence=ISO

UNIPROTKB|C9JP01 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
 Identities = 54/180 (30%), Positives = 94/180 (52%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              G  R+ +  + L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G 
Sbjct:    74 -GTQRDWS--QTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQ 186

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.62.1 hypothetical protein (474 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
cd13130	441	cd13130, MATE_rft1, Rft1-like subfamily of the mul	1e-165
pfam04506	533	pfam04506, Rft-1, Rft protein	1e-43
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	1e-04

>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE)

 Score =  469 bits (1208), Expect = e-165
 Identities = 223/369 (60%), Positives = 256/369 (69%), Gaps = 8/369 (2%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S SR FKYL+A Q  SR I FVFN  ++R LT   +  Y++QF LF T VLFLSREGFRR
Sbjct: 1   SSSRGFKYLIAAQLFSRIITFVFNQLLLRFLTPRYFG-YSIQFELFQTTVLFLSREGFRR 59

Query: 71  ACMRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNP 124
           AC+R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS P
Sbjct: 60  ACLRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPP 119

Query: 125 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME 184
           YA+AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E
Sbjct: 120 YAKAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKE 179

Query: 185 -KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
            K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT 
Sbjct: 180 PKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTI 239

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS 
Sbjct: 240 QSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASE 299

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 363
           + P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDGEA  AL  YC
Sbjct: 300 KNPKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDGEAPDALGVYC 359

Query: 364 LYVVVLAMN 372
           LY+  LA+N
Sbjct: 360 LYIPFLALN 368

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441

>gnl|CDD|218119 pfam04506, Rft-1, Rft protein

 Score =  158 bits (400), Expect = 1e-43
 Identities = 111/393 (28%), Positives = 172/393 (43%), Gaps = 39/393 (9%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S      + +  Q ++R + F  N +++R ++     I  V+  L  + +LFLSRE  R 
Sbjct: 2   SSFSGLVFSIRGQLIARILTFAINMYLIRRISPDVLGIVNVRLELLQSTILFLSREAIRL 61

Query: 71  ACMRADIKCDGASREENAAKLLKVAWLTLPLGIFIT----------IGACFFVLW--WQG 118
           A +R          +++  + + + WL+  +   I           I     + W     
Sbjct: 62  AELRIG---SLPIDDDDEEEFINLLWLSPIIQTVINVVCVYIWYAWISTVDSISWSVLLF 118

Query: 119 LSYSN---PYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMC 174
              S    P A+  IFI+  +  +ELL EP +I+ Q +L+   R+ VE+ A         
Sbjct: 119 FPISAIIEPIAEPFIFISLVSEFVELLLEPHFIVGQGMLICVKRIFVESGAFMFPGIYHL 178

Query: 175 ILIVK-QYEMEKGIV---FALSQVA-YAASLFLGYWGYFLLFGAFKTSDLFP--FRLGNM 227
            L V  QY  +K I    FAL  +A    +  +     F  F     SD  P        
Sbjct: 179 ELFVYAQYIRKKAIAYLLFALGALAIKITNKSIYELEQFSPF-----SDFLPKVSENKKS 233

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMV 285
             +D+   +       QS  K LL EG+K V+ +  L +   QAVY LV   GSL+ R +
Sbjct: 234 YFFDRDSLHAVFSMFSQSILKQLLTEGDKYVMTFTELLSLKEQAVYDLVSNYGSLLARTI 293

Query: 286 FLPFEESSYATFARSASG------QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSY 339
           F P EESS A FA++ S       +     K   + L+  L +V  IGLV + FG  YS 
Sbjct: 294 FRPIEESSNAYFAQTLSKENKKFNKNTDNHKDAVDVLSNLLHVVSYIGLVAITFGIPYSP 353

Query: 340 SLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372
            ++ L  G KWS+   ++ L +YC Y+  LA+N
Sbjct: 354 VVLLLYGGSKWSENGGASLLSWYCGYIPFLAIN 386

Length = 533

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 51/364 (14%), Positives = 111/364 (30%), Gaps = 21/364 (5%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
            L +   +LL    +S  +  +    + R L    + +YA+   +     +     G   
Sbjct: 7   KLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADF-GLPA 65

Query: 71  ACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIF 130
           A  R   +            L  +  L L L + + +    ++L       +        
Sbjct: 66  AITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSL 125

Query: 131 INGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFA 190
                 +   +   L+        L L +V              +  +    +   +   
Sbjct: 126 ALLLLPLS-SVLRGLFQGFGRFGPLALSIVSSIF------LLAAVFALLFAALGLAVWAL 178

Query: 191 LSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLL 250
           +     +  + L   G                 L  ++ +              S    L
Sbjct: 179 VLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGL-------PLLLSSLLNFL 231

Query: 251 LQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310
               + L+L     P    +Y    +L SL++ +V       +   F   +        K
Sbjct: 232 FTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLL-IVASAL---NRVLFPALSRAYAEGDRK 287

Query: 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLA 370
            +   L ++LKL+LLI +  +      +  ++ LL+G+K++   A+  L+   L  + L+
Sbjct: 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLS 345

Query: 371 MNEL 374
           +  L
Sbjct: 346 LVSL 349

Length = 480

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	100.0
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	100.0
PRK10459	492	colanic acid exporter; Provisional	100.0
COG2244	480	RfbX Membrane protein involved in the export of O-	99.94
PRK15099	416	O-antigen translocase; Provisional	99.93
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.93
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.91
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.89
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.81
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.68
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.5
PRK00187	464	multidrug efflux protein NorA; Provisional	99.34
PRK01766	456	multidrug efflux protein; Reviewed	99.34
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.31
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.28
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.16
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.05
PRK10189	478	MATE family multidrug exporter; Provisional	99.0
PRK01766	456	multidrug efflux protein; Reviewed	97.99
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	97.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	97.81
PRK10189	478	MATE family multidrug exporter; Provisional	97.69
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	97.52
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.49
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	97.33
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	97.32
PRK00187	464	multidrug efflux protein NorA; Provisional	97.2
PRK15099	416	O-antigen translocase; Provisional	97.07
PRK10459	492	colanic acid exporter; Provisional	96.81
TIGR01695	502	mviN integral membrane protein MviN. This model re	96.6
COG2244	480	RfbX Membrane protein involved in the export of O-	96.32
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	95.08
COG0728	518	MviN Uncharacterized membrane protein, putative vi	94.96
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	94.72
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	94.18
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	88.57
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	87.09
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	82.93

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-58  Score=434.38  Aligned_cols=364  Identities=40%  Similarity=0.626  Sum_probs=325.4

Q ss_pred             CccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccch
Q 017298            6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASRE   85 (374)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~   85 (374)
                      +++=.+..+|+..++.+|+..|++||+.|..+.|.++||.+|++++.+++++++++|++||.+|.|.+|.++..+|    
T Consensus         4 ~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d----   79 (530)
T KOG2864|consen    4 DSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD----   79 (530)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc----
Confidence            4455667789999999999999999999999999999999999999999999999999999999999998766543    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298           86 ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGL---S-YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (374)
Q Consensus        86 ~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~  161 (374)
                       ++.+..|..|++.+++...++.++.++..|...   . +.+++.+++.+.++++++|.+.||.+...|..++++.++..
T Consensus        80 -~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~  158 (530)
T KOG2864|consen   80 -TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA  158 (530)
T ss_pred             -cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence             677889999999999999998877665555321   1 45567899999999999999999999999999999999999


Q ss_pred             hhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHH-HHHHHhhhc-------ccccCcccccccCC--ccccc
Q 017298          162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG-YWGYFLLFG-------AFKTSDLFPFRLGN--MMSYD  231 (374)
Q Consensus       162 ~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~-~~~~~~~~~-------~~~~~~~~p~~~~~--~~~~~  231 (374)
                      |.++.++++.+..+..+..++.+++.+|+.+|++++++.+++ ||.|++.++       ..+.++++|+...+  ...++
T Consensus       159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd  238 (530)
T KOG2864|consen  159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD  238 (530)
T ss_pred             hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence            999999999998887777777799999999999999988874 565555554       22344677887554  45678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298          232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (374)
Q Consensus       232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~--~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~  309 (374)
                      ++..+..+.++.|+++||++|||||+|++.  .++..|||.|++++|+||+++|++++||||+++.+|+|..+++++||.
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            999999999999999999999999999994  457779999999999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcCCC
Q 017298          310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL  374 (374)
Q Consensus       310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~Ngi  374 (374)
                      ++..+.+..++|.+.++|+.++.||++|++.++.+++|+||++++.|.++|+||.|+|++|+|||
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGi  383 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGI  383 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999888999999999999999996

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=100.00  E-value=3.1e-57  Score=454.65  Aligned_cols=360  Identities=39%  Similarity=0.633  Sum_probs=295.4

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH
Q 017298           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK   90 (374)
Q Consensus        11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~   90 (374)
                      +..+|+.++++.|+++|++||+.|+++.|.++||.+|+.+++++++.+|++|+||||+|+|++|+++++.+   +.++++
T Consensus         2 ss~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~---~~~~~~   78 (549)
T PF04506_consen    2 SSAKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSID---KSNWAQ   78 (549)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccC---cccHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999998776522   224555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------Hhhccc-----CCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 017298           91 LLKVAWLTLPLGIFITIGACFFVL------------WWQGLS-----YSNPY-AQAIFINGFACVLELLAEPLYILSQNL  152 (374)
Q Consensus        91 ~~~~~~~~i~~g~~~~~~~~~~~~------------~~~~~~-----~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~  152 (374)
                      ..|..|.+.+++..+.+.+..+..            .+....     ..+|+ .+.+.++++++++|.+.||.+.+.|.+
T Consensus        79 ~~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~  158 (549)
T PF04506_consen   79 SINLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQM  158 (549)
T ss_pred             hhhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            666677666655444432211111            111111     22354 578899999999999999999999999


Q ss_pred             hhhhhhhhhhhhHHHHhHHHHhhhhhcc--cC-----------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcc
Q 017298          153 LLLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDL  219 (374)
Q Consensus       153 l~f~~~~~~~~~~~~~~~~~~i~l~~~~--~~-----------~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~  219 (374)
                      ++++.|+++|..+.+++|+++++++...  .+           ..++.+|+.+|+.+++..+..|... ...|..+.++.
T Consensus       159 l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~-~~~~~~~~s~~  237 (549)
T PF04506_consen  159 LFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWM-YFFPFKSFSDL  237 (549)
T ss_pred             hhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhh-ccCcccchhhc
Confidence            9999999999999999999998875432  11           1357899999999998776665432 22332222344


Q ss_pred             cccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCccchHHHHHhhhhhhHHHHhhhhhhhhhH
Q 017298          220 FPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY  294 (374)
Q Consensus       220 ~p~~~~---~~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~--~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~  294 (374)
                      +|+...   +..++|+++++..+.++.|+++||++|||||+++..  +.+.+|||.|++++|+||+++|++++||||+++
T Consensus       238 lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~  317 (549)
T PF04506_consen  238 LPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSR  317 (549)
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHH
Confidence            555432   355688999999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHH
Q 017298          295 ATFARSASGQYPQ------KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVV  368 (374)
Q Consensus       295 p~fs~~~~~~~~~------~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~  368 (374)
                      .+|+|..+++++.      +.++..+.+..++|...++|+.+++|||++++.++++++|+||.+++.+.+|++||+|+|+
T Consensus       318 ~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~  397 (549)
T PF04506_consen  318 LYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPF  397 (549)
T ss_pred             HHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence            9999997765432      2355667899999999999999999999999999999999999998888999999999999


Q ss_pred             hhcCCC
Q 017298          369 LAMNEL  374 (374)
Q Consensus       369 ~~~Ngi  374 (374)
                      ||+|||
T Consensus       398 la~NGi  403 (549)
T PF04506_consen  398 LAINGI  403 (549)
T ss_pred             HHHccH
Confidence            999996

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PRK10459 colanic acid exporter; Provisional

Probab=100.00  E-value=4.1e-35  Score=295.83  Aligned_cols=336  Identities=14%  Similarity=0.128  Sum_probs=263.9

Q ss_pred             ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 017298            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (374)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~   86 (374)
                      +.++|+.||+.|+.++++.+++++|+++++++|+|+|||||++++..++.. ....+++.|+.++++|+++++++     
T Consensus         2 ~~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~-~~~~~~~~Gl~~aii~~~~~~~~-----   75 (492)
T PRK10459          2 SLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIG-FADTLSDMGIGASIIQRQDISHL-----   75 (492)
T ss_pred             ChHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHH-HHHHHHHcCHHHHHHhcccCCHH-----
Confidence            568899999999999999999999999999999999999999999776654 44568899999999987543321     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH
Q 017298           87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA  165 (374)
Q Consensus        87 ~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~  165 (374)
                      +.+   +..|+++..|+..+++...+.+.... .+++|. ...+.++++...+..+.+.....+||+++||.....|...
T Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~  151 (492)
T PRK10459         76 QLS---TLYWLNVGLGIVVFVLVFLLSPLIAD-FYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISA  151 (492)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            222   24566666676666555544443332 355554 4667788888888888888888999999999999999999


Q ss_pred             HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 017298          166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS  245 (374)
Q Consensus       166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~s  245 (374)
                      .+...+.++.++..  + +++|+++.++++.+++..+.++....       +++.|+... +....|++++|+.|++.++
T Consensus       152 ~i~~~~~~i~~~~~--~-~g~~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~-~~~~~k~ll~~~~~~~~~~  220 (492)
T PRK10459        152 VVAGFTFAVVSAFF--W-PGALAAILGYLVNSSVRTLLFGYFGR-------KIYRPALHF-SLASVKPNLSFGAWQTAER  220 (492)
T ss_pred             HHHHHHHHHHHHHH--C-CcHHHHHHHHHHHHHHHHHHHHHHhc-------ccCCcccee-cHHHHHHHHhhhHHHHHHH
Confidence            88887776665333  3 67899999999987665543332111       122333211 1123489999999999999


Q ss_pred             HHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 017298          246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL  325 (374)
Q Consensus       246 i~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (374)
                      +..++.++.|++++|++.+++++|+|+.|+++.+++...+..++..+.+|.+++.++|     .++.++.+++.++....
T Consensus       221 ~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~-----~~~~~~~~~~~~~~~~~  295 (492)
T PRK10459        221 IINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDD-----TEKLRVGFLKLLSVLGI  295 (492)
T ss_pred             HHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC-----HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888999999999997432     35566789999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhh
Q 017298          326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLA  370 (374)
Q Consensus       326 l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~  370 (374)
                      +++|+..+....+++++.+++||+|.++ . +++++++.+..+.+
T Consensus       296 ~~~p~~~~l~~~a~~ii~ll~g~~~~~a-~-~~l~il~~~~~~~~  338 (492)
T PRK10459        296 INFPLLLGLMVVSNNFVPLVFGEKWNSA-I-PILQLLCIVGLLRS  338 (492)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcChhHHhH-H-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999887 4 37777777555443

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.94  E-value=2.7e-25  Score=223.52  Aligned_cols=343  Identities=17%  Similarity=0.136  Sum_probs=235.8

Q ss_pred             ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 017298            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (374)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~   86 (374)
                      +..++..|++.|...+++.+++++|+..++++|.++|||||++++..++.... ..+++.|+..++.|+...+++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~-~~i~~~G~~~ai~r~ia~~~~~~~~~   81 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLF-SILADFGLPAAITREIAEYREKGEYL   81 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHH-HHHHHcCCcHHHHHHHHHhhcccHHH
Confidence            44567889999999999999999999999999999999999999988776544 45778999999999755443322211


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH-
Q 017298           87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA-  165 (374)
Q Consensus        87 ~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~-  165 (374)
                      .....  ..-..+...+....+.... ...... .++.....+...++...+...........|++.+++..+...... 
T Consensus        82 ~~~~~--~~~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (480)
T COG2244          82 LLILL--SVLLLLLLALILLLLLLLI-AYLLAP-IDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSI  157 (480)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHH-HHHhcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            11111  0101111111111111110 111111 112345677778888888888888888899999998777763322 


Q ss_pred             HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 017298          166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS  245 (374)
Q Consensus       166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~s  245 (374)
                      .+......+.  ....+ .++|+.+.+.+.........++...++       ...+.... .....|+.++++.|+..++
T Consensus       158 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~l~~~~p~~~~~  226 (480)
T COG2244         158 FLLAAVFALL--FAALG-LAVWALVLGAVVSLLVLLILLGKKKRG-------LKRPILRF-SLALLKELLRFGLPLLLSS  226 (480)
T ss_pred             HHHHHHHHHH--HHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccccccCc-hhHHHHHHHHHhhHHHHHH
Confidence            1222222111  11111 467888888777654443333211110       01111100 1223489999999999999


Q ss_pred             HHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 017298          246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL  325 (374)
Q Consensus       246 i~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (374)
                      +...+.++.|++++|++.++++.|.|+.+..+.+. ...+..|++.+.+|.+++..++++.   +++++.+++.++....
T Consensus       227 ~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~---~~~~~~~~~~~~~~~~  302 (480)
T COG2244         227 LLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR---KALKKLLRQSLKLLLL  302 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999977777775 4588889999999999999877544   5555688889999999


Q ss_pred             HHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       326 l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +++|...+....+++++.+++||+|.++ . ++++++|....+..+
T Consensus       303 ~~~p~~~~l~~~~~~~i~~~fg~~~~~~-~-~~l~il~~~~~~~~~  346 (480)
T COG2244         303 ISIPALLGLLLLAPPIITLLFGEKYASA-A-PILQLLALAGLFLSL  346 (480)
T ss_pred             HHHHHHHHHHHHHhhhheeecCCcccch-h-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999986 3 377777775544443

>PRK15099 O-antigen translocase; Provisional

Probab=99.93  E-value=1.1e-23  Score=208.19  Aligned_cols=336  Identities=11%  Similarity=0.014  Sum_probs=222.4

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH
Q 017298           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK   90 (374)
Q Consensus        11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~   90 (374)
                      +..|++.|+..+++..++++|+.+++++|+|+|||||++++...+..... .+.+.|+..+..|.-.+.+  +|+++.++
T Consensus         2 ~~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~-~~~~~G~~~a~~~~ia~~~--~~~~~~~~   78 (416)
T PRK15099          2 SLAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLG-VLAGAGIFNGVTKYVAQYH--DQPQQLRA   78 (416)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH-HHHcCCccceeeeeHHhcC--CCHHHHHH
Confidence            46799999999999999999999999999999999999998776654443 4556787666533211111  11224444


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcc-hhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHH
Q 017298           91 LLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNP-YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFS  168 (374)
Q Consensus        91 ~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~  168 (374)
                      +.+.+ ++++..|++++++...+.........+++ +.......++..+...+.+.....++...+.+..+.....+.++
T Consensus        79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~  158 (416)
T PRK15099         79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLI  158 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444 56666677666665544333222123333 45566666665556666666556666666667666666666655


Q ss_pred             hHHHHhhhhhcccCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHH
Q 017298          169 RCFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR  247 (374)
Q Consensus       169 ~~~~~i~l~~~~~~~~-~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~  247 (374)
                      +....+ +.....|.+ ..++.+++|.+..+..  .++.+ ++++ .+   ....+.+.+.+..|++++++.|...+++.
T Consensus       159 ~i~l~i-~~~~~~Gv~Ga~iat~i~~~i~~~~~--~~~~~-~~~~-~~---~~~~~~~~~~~~~k~ll~~g~p~~~~~~~  230 (416)
T PRK15099        159 GVAAYY-LCYRLGGYEGALLGLALVPALVVLPA--GIMLI-RRGT-IP---LSYLKPSWDNGLAGQLGKFTLMALITSVT  230 (416)
T ss_pred             HHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH-Hccc-ee---hHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            544411 122222323 2355555554442221  12221 1110 00   00001111223348999999999999999


Q ss_pred             HHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 017298          248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIG  327 (374)
Q Consensus       248 ~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  327 (374)
                      ..+.+..|+.++++..|.++.|.|+.++++.+.+...+..++.++.+|..++..   |.   ++.++.+++..+....++
T Consensus       231 ~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~---~~---~~~~~~~~~~~~~~~~~~  304 (416)
T PRK15099        231 LPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT---EK---RDITREIVKALKFVLPAV  304 (416)
T ss_pred             HHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Ch---HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998878999999999999999952   22   334456777888888888


Q ss_pred             HHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHH
Q 017298          328 LVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLY  365 (374)
Q Consensus       328 ~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~  365 (374)
                      ++........+|+++.+++||+|.++ . +++++.+..
T Consensus       305 ~~~~~~~~l~a~~ii~l~~g~~~~~~-~-~~~~~l~~~  340 (416)
T PRK15099        305 AAASFTVWLLRDFAIWLLFSNKFTAM-R-DLFAWQLVG  340 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHH-H-HHHHHHHHH
Confidence            77777776799999999999999986 3 366665553

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.93  E-value=2e-23  Score=210.13  Aligned_cols=350  Identities=15%  Similarity=0.149  Sum_probs=237.1

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHH
Q 017298           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~   92 (374)
                      .|++.|.+++++.+++++++.+++++|.|+|||||.+++...+.... ..+.+.|+..++.|.-.+..+++|.++.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~   80 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL   80 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence            47889999999999999999999999999999999999977665433 34566888888887522211111222333443


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhH
Q 017298           93 K-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRC  170 (374)
Q Consensus        93 ~-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~  170 (374)
                      . ..|+++..++.+++++..+.+.......+++. ...+.+++...++..+.......+|++.|+|.....+....+++.
T Consensus        81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~  160 (488)
T TIGR02900        81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRI  160 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHH
Confidence            3 34666666776666555444443322234443 345677888888888888888889999999999999999988887


Q ss_pred             HHHhhhhhcccC--c-chhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-cccccccCCcccccHHHHHHHHHHHHHHH
Q 017298          171 FTMCILIVKQYE--M-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTS-DLFPFRLGNMMSYDKQLANMCTLFTFQSF  246 (374)
Q Consensus       171 ~~~i~l~~~~~~--~-~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~l~~f~~~l~~~si  246 (374)
                      ...+.++....+  . +++.+...+..+...+..+..+.+.++++..+++ ...+++ ..+....|++++++.|.+.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~l~~~~~p~~l~~~  239 (488)
T TIGR02900       161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYK-SEGKALLFDLFSVSLPLTLSRF  239 (488)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC-cchHHHHHHHHHHHHHHHHHHH
Confidence            765554332211  1 2333333333333333222222111111100000 000000 0011234899999999999999


Q ss_pred             HHHHHhhhhhhhhhhccCC---------ccchHH-HHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298          247 RKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL  316 (374)
Q Consensus       247 ~~~~l~~~D~lvig~~~~~---------~~~G~Y-~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~  316 (374)
                      ..++.++.|++++|+..+.         ++.|.| +++.++.+++. .+..++..+..|.+++..+++|.   ++.++.+
T Consensus       240 ~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~~~---~~~~~~~  315 (488)
T TIGR02900       240 IGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKKNY---SSIEKRI  315 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence            9999999999999987642         345655 46777777774 77889999999999999876554   5566688


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      ++.++....++.|+.+.....+|+++.++++  |.++ . +.+++++...++.+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~~-~-~~l~i~~~~~~~~~~~  367 (488)
T TIGR02900       316 NQAIKISLLLGLITTVILLVIPDELGALFYG--RPDA-G-NFIRVLAPSFPFLYFS  367 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCch-H-HHHHHHHHHHHHHHHH
Confidence            8899999999999999989999999999885  4454 3 4788888876666543

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.91  E-value=1.1e-21  Score=198.20  Aligned_cols=345  Identities=13%  Similarity=0.048  Sum_probs=244.1

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhh-hHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHH
Q 017298           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADY-AIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAA   89 (374)
Q Consensus        11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~f-Glvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~   89 (374)
                      ++.|++.+..++++.+|+.+|+-..+++|+++||++ |.+++...+.......+.+.|+..+++++-.+++++++  +..
T Consensus         1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~--~~~   78 (502)
T TIGR01695         1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEK--EAR   78 (502)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh--HHH
Confidence            467899999999999999999999999999999999 99999776654443445567788888874322211111  111


Q ss_pred             -HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc---cCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298           90 -KLLKVAW-LTLPLGIFITIGACFFVLWWQGL---SYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (374)
Q Consensus        90 -~~~~~~~-~~i~~g~~~~~~~~~~~~~~~~~---~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~  160 (374)
                       ...+..+ ..+..++..+++..+..+.....   ..+++.    ...+++++++.++..+.......+|.+.++|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (502)
T TIGR01695        79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF  158 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence             2223333 33233333344444333333321   123442    35678899999999998888889999999999998


Q ss_pred             hhhhHHHHhHHHHhhhhhcccCcchhHHHH--HHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298          161 VETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC  238 (374)
Q Consensus       161 ~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~--~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~  238 (374)
                      .+....++..+. +.+  ...+ +++++.+  .+.++..++..+.++.+.++++    .++.|+.+. +....|++++++
T Consensus       159 ~~i~~~i~~i~~-~~~--~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~k~~l~~~  229 (502)
T TIGR01695       159 SPILFNIGVILS-LLF--FDWN-YGQYSLALAIGVLIGGVAQLLIQLPFLRKAG----FLLKPRFNF-RDPGLKRFLKLF  229 (502)
T ss_pred             HHHHHHHHHHHH-HHH--HHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCcCCC-CChhHHHHHHHH
Confidence            888776654432 222  2222 4566655  6666666554444333222111    112232211 122348999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298          239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  318 (374)
Q Consensus       239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~  318 (374)
                      .|...+++..++.++.|+.+ +...+.++.|.|+.++++.+++...+..++..+.+|.+++...++|.   ++.++.+++
T Consensus       230 ~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~---~~~~~~~~~  305 (502)
T TIGR01695       230 LPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW---NELRDLLNQ  305 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHH
Confidence            99999999999999999987 88889999999999999999888778889999999999999876554   556668999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHhcCC------cCCCchHHHHHHHHHHHHHhhcC
Q 017298          319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK------WSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~------w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      .++....+++|+..+....+++++.+++|++      |.++ . ++++++|...++.+++
T Consensus       306 ~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~-~-~~l~~~~~~~~~~~~~  363 (502)
T TIGR01695       306 GIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMT-A-TILAAYGLGLIFYSLQ  363 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH-H-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999953      4444 3 5888888877766554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.89  E-value=9e-21  Score=175.29  Aligned_cols=269  Identities=15%  Similarity=0.195  Sum_probs=176.9

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHH
Q 017298           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~   92 (374)
                      .|+..|+..+++.+++++|+++++++|.++|||||.+++..++.. ....+.+.|++.++.|+-.+++++  ++..+...
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~-~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~   78 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVS-LLSILADLGLSQAIVRFIAEYKDK--KELRSAYF   78 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence            588899999999999999999999999999999999999777754 445577899999999875443321  11112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhH
Q 017298           93 KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRC  170 (374)
Q Consensus        93 ~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~-~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~  170 (374)
                      ....    ....+..+.+.+...... ...++. .....++.+.. ++..+........+...+++.....+....+.+.
T Consensus        79 ~~~~----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (273)
T PF01943_consen   79 SSVL----FLLLIFSLIFLLILLIAS-FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSL  153 (273)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1121    111111111111111111 223332 22222333332 3455555555667777788888787777777777


Q ss_pred             HHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHH
Q 017298          171 FTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLL  250 (374)
Q Consensus       171 ~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~  250 (374)
                      +..+.+....   +.++....++.+..++..+..+.+.+.       .+.+++...+....|+.++++.|+..+++...+
T Consensus       154 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (273)
T PF01943_consen  154 LLILLLLFLG---SSLWGFLLGLVISSLVSLIISLFYLRR-------KLRPRFSFFSKKFFKEILRFGLPLFLSSLLSWL  223 (273)
T ss_pred             HHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655543332   236666666666665544333222121       011111111123458999999999999999999


Q ss_pred             HhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298          251 LQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  300 (374)
Q Consensus       251 l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~  300 (374)
                      .++.|+++++++.|++++|.|+.++++++.+. .+..++.++.+|.++|+
T Consensus       224 ~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  224 YSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRL  272 (273)
T ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999766 66668888999999986

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.81  E-value=2.4e-17  Score=150.99  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 017298           28 GIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI  107 (374)
Q Consensus        28 ~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~  107 (374)
                      +++|+..++++|.++|||||.++...++.... ..+.+.|+++.++|+.+++++     +..+......   ..++..++
T Consensus         2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~-~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~   72 (251)
T PF13440_consen    2 GINFLFLILLARYLGPEDFGIYALIFSIVSIL-SIVASLGLRQSLVRSAARDKQ-----DIRSLLRFSL---LVSLLLAV   72 (251)
T ss_pred             hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHH-----HHHHHHHHHH---HHHHHHHH
Confidence            57899999999999999999999987776544 456789999999995433222     3333333332   11222222


Q ss_pred             HHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcchh
Q 017298          108 GACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG  186 (374)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~v  186 (374)
                      ++..+...... .++++. .+.+.+.++..+.+.+.+.....++.+.|++.....+....+.+.+..+.+.....   .+
T Consensus        73 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  148 (251)
T PF13440_consen   73 ILAILAILIAY-FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGL---NL  148 (251)
T ss_pred             HHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hH
Confidence            22221111111 234443 45566777778888888888888899999999888888888887555444433222   34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCc
Q 017298          187 IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY  266 (374)
Q Consensus       187 ~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~  266 (374)
                      ++...+..+..+...+..+...+.         .|+.+. +... ++.++++.|+..+++...+.+++|+++++.+.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  217 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRR---------KLRLSF-KFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE  217 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc---------ccCCCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            444444444443333322221110         111111 1112 24899999999999999999999999999977999


Q ss_pred             cchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298          267 NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  300 (374)
Q Consensus       267 ~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~  300 (374)
                      +.|.|+.+.++...+...+.+++.++.+|.++|.
T Consensus       218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999899999999999999873

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.68  E-value=8.7e-14  Score=133.60  Aligned_cols=316  Identities=17%  Similarity=0.100  Sum_probs=202.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHHHHH-HHH
Q 017298           20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVA-WLT   98 (374)
Q Consensus        20 ~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~~~~-~~~   98 (374)
                      +..++...+..++.+.++.+ +++++.|.+++...+. .....+ -.|+.++....-.+...++|.++..+..... +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~a~~i~-~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         3 ILANILQPLLGLVDTAFVGH-LGPVDLAAVSLGSSVF-MFLFSI-LMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHH-HHHHHH-HHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            45677778888777666666 6789999888864432 332333 2566666543211100001111333333333 455


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCcc-h----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHH
Q 017298           99 LPLGIFITIGACFFVLWWQGLSYSNP-Y----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM  173 (374)
Q Consensus        99 i~~g~~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~  173 (374)
                      ...++.+++++.+...+.......++ .    ...+.++++..++.++.......++.+.+++.....+....++.....
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            55666666555444333332222232 2    245788888889888888877778888888988888888887777766


Q ss_pred             hhhhh-cccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHh
Q 017298          174 CILIV-KQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ  252 (374)
Q Consensus       174 i~l~~-~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~  252 (374)
                      +.++. ..+ .+++.+.+.+.++..++.++..+.+.+++++.+. ++.++ .+.+....|++++++.|.+.+++...+.+
T Consensus       160 ~~li~~~~g-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~k~~~~~~~P~~~~~l~~~~~~  236 (342)
T TIGR00797       160 YILIFGKFG-FLGIVGAALATVISYWLMFLLLLYYIKKAKKIGL-KWEGL-LKPDWEVLKRLLKLGLPIAFRVILESLSF  236 (342)
T ss_pred             HHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccccc-cCCCHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            65543 221 0234445555555554433322222121111110 01011 11122234899999999999999999999


Q ss_pred             hhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017298          253 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMA  332 (374)
Q Consensus       253 ~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~  332 (374)
                      +.|+++++. .+.++.|.|++++++.+++. .+...+..++.|..++...++|.   ++.++.+++.++....++.|+..
T Consensus       237 ~~~~~i~~~-~g~~~v~~~~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  311 (342)
T TIGR00797       237 ALLALLVAR-LGSIALAAHQIALNVESLLF-MPAFGFGIAVSILVGQALGAGDP---KRAKEVARVALKLSLLLGLVLAI  311 (342)
T ss_pred             HHHHHHHHH-cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998876 57899999999999988654 66778999999999998766544   55566888899999999999888


Q ss_pred             hcccchHHHHHHHh
Q 017298          333 FGPSYSYSLVRLLY  346 (374)
Q Consensus       333 ~~~~~a~~lv~ll~  346 (374)
                      +....++++++++.
T Consensus       312 ~l~~~~~~i~~~~~  325 (342)
T TIGR00797       312 ILILFREFIARLFT  325 (342)
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888877654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.50  E-value=7.1e-11  Score=118.17  Aligned_cols=263  Identities=15%  Similarity=0.113  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHHHHhh---cccCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHH
Q 017298          101 LGIFITIGACFFVLWWQ---GLSYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM  173 (374)
Q Consensus       101 ~g~~~~~~~~~~~~~~~---~~~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~  173 (374)
                      .++.++++..++++++.   .+.++++.    ...++++....++.++.......+|.+-||..-.......++.-.+..
T Consensus        66 ~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~  145 (451)
T PF03023_consen   66 ISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSL  145 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence            34444555444444432   22343332    245788888888888888888888888888877766665554433322


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhh
Q 017298          174 CILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQE  253 (374)
Q Consensus       174 i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~~  253 (374)
                      +.. ....+...+.+++++..+.++..++....+.+ +-   +.++.|.....+ ...|+.++...|.+..+...|+..-
T Consensus       146 ~~~-~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~~qi~~l  219 (451)
T PF03023_consen  146 LLL-SNSWGQENIYALAWGVLIGAIIQFLIQLPYLR-RF---GFRFRPKFDWRD-PNLKRFLKLAIPLLLSSSISQINIL  219 (451)
T ss_pred             HHH-HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH-HC---CCcccccCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211 11111123667777777777665543332212 11   111223221111 1237899999999999999999999


Q ss_pred             hhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017298          254 GEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF  333 (374)
Q Consensus       254 ~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  333 (374)
                      .|+.+-+. .+......++-|.++.++|..++..++..+.+|.+||..+++|.   ++.++..++.++...++.+|+.++
T Consensus       220 v~~~laS~-l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~---~~~~~~~~~~l~~~~~i~iP~~~~  295 (451)
T PF03023_consen  220 VDRALASF-LGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW---EEFRKTLRKALRLILLILIPASIG  295 (451)
T ss_pred             HHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998887 55778899999999999999999999999999999999877654   556668899999999999999999


Q ss_pred             cccchHHHHHHHhcC-CcCCCc---hHHHHHHHHHHHHHhhcCC
Q 017298          334 GPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNE  373 (374)
Q Consensus       334 ~~~~a~~lv~ll~G~-~w~~~~---~~~il~~~~~~~~~~~~Ng  373 (374)
                      ....++|++.++|.. +-.+.+   ...++++|+..+|..++|.
T Consensus       296 ~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~  339 (451)
T PF03023_consen  296 LIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALND  339 (451)
T ss_pred             HHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999943 332221   3579999999999888764

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.34  E-value=4.3e-09  Score=105.83  Aligned_cols=347  Identities=14%  Similarity=0.004  Sum_probs=208.6

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH---hcccccCCCccchh
Q 017298           10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---MRADIKCDGASREE   86 (374)
Q Consensus        10 ~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al---ir~~~~~~~~~~~~   86 (374)
                      +++.+-+.=.+++++.+.+.+++.+.++.| +++++..-+++...+...+.. +. .|+..+.   +.+....++   .+
T Consensus        10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~alAa~~i~~~i~~~~~~-~~-~gl~~~~~~i~aq~~Ga~~---~~   83 (464)
T PRK00187         10 KAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALAGGGLGAASYSFVSI-FC-VGVIAAVGTLVAIRHGAGD---IE   83 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcCCC---hh
Confidence            445566667788999999999999999999 588877777765544332222 11 3333322   222111111   11


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298           87 NAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (374)
Q Consensus        87 ~~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~  160 (374)
                      +..+..+.+ ++.+..++...++..+ .......+-.|+.     ...+.++++..+...+.......++-.-+.+.-..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         84 GATRLAQAGLWLAWLLALVAALLLWN-LKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            334444344 3444445544433322 1222222223332     24467777777777776666666676677777777


Q ss_pred             hhhhHHHHhHHHHhhhhhcccC--cchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHH
Q 017298          161 VETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL  234 (374)
Q Consensus       161 ~~~~~~~~~~~~~i~l~~~~~~--~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l  234 (374)
                      ......+++.....+++.-..+  ..|+    ++.++++....+.. +.|+   .+++..+..++.....+.+....|++
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~i  238 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALAL-ALYI---RRHPAYAAYPLRKGLSRPSRAALREL  238 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHH-HHHH---HhcchhhhhhhhccccCCCHHHHHHH
Confidence            7777777777776665532211  1233    45555443332211 1222   22211100000000000011223789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHH
Q 017298          235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN  314 (374)
Q Consensus       235 ~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~  314 (374)
                      ++.+.|...+.+........|..++++ .|.++++-|+++.++.++.. .+..-+....-+.-++..-++|.   ++.++
T Consensus       239 l~lg~P~~~~~~~~~~~~~i~~~~i~~-~G~~alAa~~i~~~i~~l~~-~~~~gi~~a~~~lvgq~~Ga~~~---~~~~~  313 (464)
T PRK00187        239 WRLGLPIGGTYAVEVGLFTFAALCMGA-LGSTQLAAHQIALQIVSVAF-MVPVGLSYAVTMRVGQHYGAGRL---LEARR  313 (464)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH---HHHHH
Confidence            999999999999999999999999998 45589999999999988644 55667888888999998876554   55556


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CcCCCc----hHHHHHHHHHHHHHhhcC
Q 017298          315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       315 ~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~-~w~~~~----~~~il~~~~~~~~~~~~N  372 (374)
                      ..+..+.+...++++........+++++.++.++ +-.+.+    ...++.+.+...++.++|
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~  376 (464)
T PRK00187        314 AGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQ  376 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            7787888888888777777777888999887543 211111    234777777777777654

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.34  E-value=3.2e-09  Score=106.33  Aligned_cols=348  Identities=16%  Similarity=0.091  Sum_probs=200.7

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH---h-cccccCCCccchhh
Q 017298           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---M-RADIKCDGASREEN   87 (374)
Q Consensus        12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al---i-r~~~~~~~~~~~~~   87 (374)
                      ..+=+.-.++.+......+++-+.++.| +++++.+-+++...+...... +. .|+..+.   + |+-..+|    .++
T Consensus        14 il~~~~P~~~~~~~~~~~~~~d~~~i~~-~g~~~laa~~~~~~~~~~~~~-~~-~g~~~a~~~~vs~~~g~~~----~~~   86 (456)
T PRK01766         14 LLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLAAVAIGTSIWLPVIL-FG-HGLLLALTPIVAQLNGAGR----RER   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcCCC----hHH
Confidence            3444556778888888888888877777 577776666665443222211 11 3333322   2 2211111    113


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298           88 AAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (374)
Q Consensus        88 ~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~  161 (374)
                      ..+.++.. +.++..++.++++...+..........++.     ...+.++++..+...+.......+|-..+.|.-.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (456)
T PRK01766         87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI  166 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            44444444 355555555544443332222222233332     234667777777777777766667777777877887


Q ss_pred             hhhHHHHhHHHHhhhhhcccC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHH
Q 017298          162 ETVATFSRCFTMCILIVKQYE--MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT  239 (374)
Q Consensus       162 ~~~~~~~~~~~~i~l~~~~~~--~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~  239 (374)
                      .....+++......++....+  ..++.+.+++..+...+..+.++.+.+++...+..+......+.+....|+.++.+.
T Consensus       167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~  246 (456)
T PRK01766        167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL  246 (456)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence            777777777766555432111  123333333333333332222221212111000000111000001122378999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (374)
Q Consensus       240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~  319 (374)
                      |...+.+...+....|..+++++ |.++++.|+++.++.++.. .+...+..+.-+.-++...++|.   ++.++..+..
T Consensus       247 P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~---~~~~~~~~~~  321 (456)
T PRK01766        247 PIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRT---LDARQYAYIG  321 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Confidence            99999999999999999999986 6778999999999988654 44556777777888888766554   5566688888


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +++...++++........++++..++..|.=.......++.+.+...++.++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~  373 (456)
T PRK01766        322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAI  373 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888898886543220000022466666666666554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.31  E-value=6.1e-09  Score=104.36  Aligned_cols=354  Identities=14%  Similarity=0.048  Sum_probs=211.6

Q ss_pred             ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhH--HHHHHHHhcccccCCCccc
Q 017298            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSR--EGFRRACMRADIKCDGASR   84 (374)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~--~g~~~alir~~~~~~~~~~   84 (374)
                      ++-++..+=+.=.++++....+.+++-+.++.|++++++.+-+++...+......+..-  .|.. +++.+....+   |
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~-~lvsq~~Ga~---~   84 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTG-SLLSIKRGEG---D   84 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHhcCC---C
Confidence            44555666666778889999999999999999999998888777655443222211111  1111 2332211111   1


Q ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh
Q 017298           85 EENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLR  158 (374)
Q Consensus        85 ~~~~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~  158 (374)
                      .++..+..+.. +++...++.++++...+........-.++.     ...+.+++++.++..+.......++...+-+.-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~  164 (453)
T PRK09575         85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA  164 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            12334443343 455555655555544433333222222321     255788888888888877776667766666767


Q ss_pred             hhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298          159 LVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC  238 (374)
Q Consensus       159 ~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~  238 (374)
                      .+....+.+++......++... + +++.+-+++..+...+..+..+.+..++.. . .++..+..+.+....|+.++.+
T Consensus       165 ~~~~~~~~~~ni~l~~~li~~~-~-~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~il~ig  240 (453)
T PRK09575        165 TGLMVIGALINIVLDYLFIGWL-D-WGLTGAAIATALAQLVVTVLGLGYFFSSRA-N-IRLTLKELRFNWSLAPKIVLLG  240 (453)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhC-C-chhHHHHHHHHHHHHHHHHHHHHHHHCCCc-e-eEEeeccCCcCHHHHHHHHHhC
Confidence            7777777777766665554322 2 344333333333332222221111111100 0 0010000000112237789999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298          239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  318 (374)
Q Consensus       239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~  318 (374)
                      .|...+.....+..-.-..+++++.+.++++.|+++.++.++.. .....+....-|.-++..-.+|.   ++.++.++.
T Consensus       241 ~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvg~~~Ga~~~---~~~~~~~~~  316 (453)
T PRK09575        241 SSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGARQY---DNIKKLLKL  316 (453)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhcCCCh---HHHHHHHHH
Confidence            99888887776766666667777766678999999999887644 66678889999999999877655   566668888


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHhcCC-cCCCchHHHHHHHHHHHHHhhcC
Q 017298          319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~-w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      .+++....+++........+++++.++-.++ =.-+.....+.+.+...|+.+++
T Consensus       317 ~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~  371 (453)
T PRK09575        317 AMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFL  371 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888888888989888765321 00011235677777777766653

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.28  E-value=4.5e-08  Score=98.00  Aligned_cols=348  Identities=14%  Similarity=0.040  Sum_probs=217.0

Q ss_pred             ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHH----HHhHHHHHHHHhcc---cccC
Q 017298            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVL----FLSREGFRRACMRA---DIKC   79 (374)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~----~ls~~g~~~alir~---~~~~   79 (374)
                      ....++.|+..+...+.+++|+.+|+=-+++++.++..   ..+-+..+-.-+-+    .+.+..+.+|.+-.   .+.+
T Consensus         4 ~~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~---~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~   80 (518)
T COG0728           4 KSKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAG---AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKK   80 (518)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHc
Confidence            34456778888899999999999999999999999983   33333222111112    22344456665521   1111


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCcchh----HHHHHHHHHHHHHHhhhHHHHHHHh
Q 017298           80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQ----GLSYSNPYA----QAIFINGFACVLELLAEPLYILSQN  151 (374)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~----~~~~~~~~~----~~l~~~~l~~~i~~l~~p~~~~~~r  151 (374)
                      +.++...++.+.+....  ..+.+.++++..+..++..    ...++++..    ..++++..-.++.++.......++.
T Consensus        81 ~~~~~~~~f~~~v~~~l--~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs  158 (518)
T COG0728          81 EGEEAARFFSRLVTGLL--TLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNS  158 (518)
T ss_pred             chhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11112223444333222  1223344444444444443    122233321    2346666666666666666667777


Q ss_pred             hhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcch-hHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccc
Q 017298          152 LLLLRLRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY  230 (374)
Q Consensus       152 ~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (374)
                      +.+|..-.......++.-....+   +..+..+. .++++++-++.++..++..+...+..+    -...|++..++. .
T Consensus       159 ~~~F~~~a~aPvl~Nv~~I~~~l---~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g----~~~~p~~~~~~~-~  230 (518)
T COG0728         159 RNRFFIPAFAPVLLNVSVIGLAL---FLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG----LLIKPRFGFKDP-G  230 (518)
T ss_pred             cCeechhhhhHHHHHHHHHHHHH---HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cccCCCCCCCch-h
Confidence            77776555555444444332211   12222233 577788888888777665443322211    112333222111 2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (374)
Q Consensus       231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~  310 (374)
                      .|+....-.|.+...-+.|++.-.|+.+-+.. .......++-|.++-++|..++--.+..+.+|.+||..+++|.   +
T Consensus       231 lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l-~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~---~  306 (518)
T COG0728         231 LKRFLKLMLPALLGVSISQINLLIDTAIASFL-AEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW---P  306 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh---H
Confidence            26677777888888889999999998765554 4555677888999999999999999999999999999887655   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc----hHHHHHHHHHHHHHhhc
Q 017298          311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAM  371 (374)
Q Consensus       311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~----~~~il~~~~~~~~~~~~  371 (374)
                      +.++.....+|...++++|..++....|++++.++|...=-+.+    ..+++..|..-+|.+++
T Consensus       307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L  371 (518)
T COG0728         307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL  371 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence            45557888999999999999999999999999999976432221    24788888886665554

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.16  E-value=9.2e-08  Score=95.86  Aligned_cols=349  Identities=16%  Similarity=0.092  Sum_probs=225.3

Q ss_pred             cchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHh--HHHHHHHHhcccccCCCccch
Q 017298            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLS--REGFRRACMRADIKCDGASRE   85 (374)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls--~~g~~~alir~~~~~~~~~~~   85 (374)
                      ..|++.+=+.=.+++++.+...+++=+.+..|+. +|+-+-+++...+......+..  ..|...-.-|.-..+|    .
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~----~   89 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGD----R   89 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCc----h
Confidence            3344445555567899999999999999999997 8888888887666533332222  2222222223311111    1


Q ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCcc----h-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Q 017298           86 ENAAKLLKV-AWLTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL  159 (374)
Q Consensus        86 ~~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~  159 (374)
                      ++..+.... .|+++.+|+.+.++............-.++    . ..-+.+..++.+...+.......++-+-|.|.-.
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m  169 (455)
T COG0534          90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM  169 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence            244444444 456667776665554433322222212222    1 2457888999999999888888888888999999


Q ss_pred             hhhhhHHHHhHHHHhhhhhcccCcchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccc-cCCcccccHHH
Q 017298          160 VVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR-LGNMMSYDKQL  234 (374)
Q Consensus       160 ~~~~~~~~~~~~~~i~l~~~~~~~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l  234 (374)
                      +....+.+...+.-..+++...+.+|+    ||.++++.+..+..+.    +...++..  ...+..+ .+.+....|+.
T Consensus       170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~i  243 (455)
T COG0534         170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLI----YLLRKKRL--LSLFKKKLLKPDRKLLKEI  243 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHH----HHHhcchh--hhhhhhhccCCCHHHHHHH
Confidence            999999999999888876653221333    5555666555433322    11111100  0001000 01122334799


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHH
Q 017298          235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN  314 (374)
Q Consensus       235 ~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~  314 (374)
                      ++.+.|...+++........-..+++++. .+.++-|+++.++.++.. .....+..+.-+.-.+..-.+|.   ++.++
T Consensus       244 ~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~---~~a~~  318 (455)
T COG0534         244 LRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNY---KRARR  318 (455)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHH
Confidence            99999999999988888888888888776 888999999999988655 55557888888888888766555   55666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       315 ~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      ..+..+++...+++.........+++++.++..+.=........+.+.+.+.|+.++|
T Consensus       319 ~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~  376 (455)
T COG0534         319 AARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQ  376 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888777777778888999987766111111346777888888777654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.05  E-value=9e-07  Score=88.46  Aligned_cols=324  Identities=11%  Similarity=-0.011  Sum_probs=191.2

Q ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHH--hHHHHHHHHhcccccCCCccchh
Q 017298            9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL--SREGFRRACMRADIKCDGASREE   86 (374)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~l--s~~g~~~alir~~~~~~~~~~~~   86 (374)
                      -++..|=+.=.+++++.+.+.+++-+.++.|+.++++..-+++...+......+.  -..|. .+++.+....++   .+
T Consensus         8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~-~~lvsq~~Ga~~---~~   83 (441)
T PRK10367          8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMST-TGLTAQAFGAKN---PQ   83 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCC---HH
Confidence            3445555566788899999999999999999878776665666433322111111  11221 233433222211   11


Q ss_pred             hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298           87 NAAKLLKV-AWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (374)
Q Consensus        87 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~  160 (374)
                      +..+.... .++++..++.+++....+........-.++.     ...+.+++++.+...+.......++-..+-|.-.+
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            33333322 3444444444433322221111111122332     24567777787877777777677777778888888


Q ss_pred             hhhhHHHHhHHHHhhhhhccc-Ccchh-HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298          161 VETVATFSRCFTMCILIVKQY-EMEKG-IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC  238 (374)
Q Consensus       161 ~~~~~~~~~~~~~i~l~~~~~-~~~~v-~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~  238 (374)
                      +...+.+++.+....++.... |..|. ++.+++|.+..+...  ++.++.  ++.++.+..+.++.. ....|+.++.+
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~--~~~~~~--~~~~~~~~~~~~~~~-~~~~~~il~ig  238 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGL--LMVRKV--LKLRGISLEMLKTAW-RGNFRRLLALN  238 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH--HHHHHH--HhhccccHHHhhhhh-HHHHHHHHHhC
Confidence            888887777777666554221 22222 666666666543322  222111  110100000011100 01237889999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298          239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  318 (374)
Q Consensus       239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~  318 (374)
                      .|...+..........-..+++++ |.+.++-|+++.++.++.. .....+.++.-|.-++..-.+|.   ++.++..+.
T Consensus       239 ~P~~~~~~~~~~~~~~~~~~~~~~-G~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~---~~a~~~~~~  313 (441)
T PRK10367        239 RDIMLRSLLLQLCFGAITVLGARL-GSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDG---SQLLDVWRA  313 (441)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCH---HHHHHHHHH
Confidence            999999988888877778888875 5678999999999988654 55557888888899998877655   455557777


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHh
Q 017298          319 ALKLVLLIGLVFMAFGPSYSYSLVRLLY  346 (374)
Q Consensus       319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~  346 (374)
                      .++.....+..........+++++.++-
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~i~~lFt  341 (441)
T PRK10367        314 ACRQSGIVALLFSLVYALAGEHIIALLT  341 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888877777666666667778888753

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.00  E-value=1.9e-06  Score=86.96  Aligned_cols=341  Identities=7%  Similarity=-0.062  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHH---HHhcccccCCCccchhhHHHHH
Q 017298           16 FKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR---ACMRADIKCDGASREENAAKLL   92 (374)
Q Consensus        16 ~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~---alir~~~~~~~~~~~~~~~~~~   92 (374)
                      +.=.+++++.....+++.+.++.| +++++..-+++...+........  .|+..   +++.+.-..++   .++..+..
T Consensus        35 a~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~~~~--~gl~~g~~~lvsq~~Ga~~---~~~~~~~~  108 (478)
T PRK10189         35 AVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIMAFF--AAIDLGTTVVVAFSLGKRD---RRRARAAA  108 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC---HHHHHHHH
Confidence            334566777888888888888887 68888777777655532222111  22222   22222111111   11333433


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhhcccC--Ccch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhh
Q 017298           93 KVA-WLTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV  164 (374)
Q Consensus        93 ~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~  164 (374)
                      ..+ ++++..++.++++...+.........  .|+.     ...+.+..+..+..++.......+|-..+-|.-..+...
T Consensus       109 ~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~  188 (478)
T PRK10189        109 RQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGG  188 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHH
Confidence            333 34444555554443333222222221  2432     244677777788887777766667766777777777777


Q ss_pred             HHHHhHHHHhhhhhcc---cCcchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccc-ccCCcccccHHHHH
Q 017298          165 ATFSRCFTMCILIVKQ---YEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPF-RLGNMMSYDKQLAN  236 (374)
Q Consensus       165 ~~~~~~~~~i~l~~~~---~~~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~  236 (374)
                      ..+++......+++..   .+ +|+    ++.+++|.+..++.  .++.+.+.++..+ .+ .++ ....+....|+.++
T Consensus       189 ~~~~ni~l~~~li~g~~~~~~-lGv~Gaa~At~is~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~il~  263 (478)
T PRK10189        189 MNILNIIISSILIYGLFSWQG-LGFVGAGLGLTISRYIGAVAI--IWVLMIGFNPALR-IS-LKSYFKPLNFAIIWEVMG  263 (478)
T ss_pred             HHHHHHHHhHHHHhcCCCCCc-cchHHHHHHHHHHHHHHHHHH--HHHHHhccCccce-ee-eccccccCCHHHHHHHHH
Confidence            7777766666654422   12 333    55555555543332  1222111000000 00 000 00001123478999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298          237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL  316 (374)
Q Consensus       237 f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~  316 (374)
                      .+.|...+.+...+..-.-..+++++ |.+.++-|+++.++.++.. .....+.++.-+.-++..-.++.   ++.++..
T Consensus       264 iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~---~~a~~~~  338 (478)
T PRK10189        264 IGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQI---AQAERQL  338 (478)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHHHH
Confidence            99998877666655444444445543 5678899999999988644 45557888888888888766554   5555577


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      +..++....++..+..+....+++++.++-.|.=.-......+.+.+.+.|+.++|
T Consensus       339 ~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~  394 (478)
T PRK10189        339 RHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAAS  394 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777666666666788888865432100011235778888888887765

>PRK01766 multidrug efflux protein; Reviewed

Probab=97.99  E-value=4.4e-05  Score=76.49  Aligned_cols=137  Identities=9%  Similarity=0.004  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (374)
Q Consensus       231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~  310 (374)
                      .|+.++++.|...+++..++.+..|..++|++ +.++++-++++.++.... ..+...+.....|..++...++|.   +
T Consensus        11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~---~   85 (456)
T PRK01766         11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR---E   85 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh---H
Confidence            37899999999999999999999999999995 677888899998875533 355667888889999998876554   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      +.++.++..+.....+++++.+.....+++++.++..|+-........+.+++...|+.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~  147 (456)
T PRK01766         86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY  147 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55568888999998888888887778888888876544311111235677777766666554

>TIGR00797 matE putative efflux protein, MATE family

Probab=97.92  E-value=6.2e-05  Score=72.07  Aligned_cols=128  Identities=18%  Similarity=0.181  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (374)
Q Consensus       240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~  319 (374)
                      |.+.+++..++.+..|+++++++ +.++.|.|+.+.++.+ +.+.+...+.++..|..++...++|.   ++.++..+..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~---~~~~~~~~~~   75 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHL-GPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNY---QRLGRQAQQS   75 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCCh---HHHHHHHHHH
Confidence            46778899999999999999995 5788999999988866 45577889999999999998766544   4556678888


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      +.....+++++..+....++++..++..++=........+.+++...|+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~  128 (342)
T TIGR00797        76 LLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN  128 (342)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88988888888888888899998765423211111235777777777766554

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=97.81  E-value=0.00018  Score=72.15  Aligned_cols=137  Identities=9%  Similarity=-0.052  Sum_probs=104.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (374)
Q Consensus       231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~  310 (374)
                      .|+.++.+.|...++++..+.+-.|.+++|++.|.++++.|++++++-++.. .+..-+....-+..++...++|+   +
T Consensus        11 ~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~---~   86 (453)
T PRK09575         11 YRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDL---E   86 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCH---H
Confidence            4899999999999999999999999999999988889999999998866544 33445555666788888766554   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +.++..++.+.....+++++.......+++++.++.++.=......+++++++...|+..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l  147 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLG  147 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            5566888899999989988888888899999987643321111123577777776666543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=97.69  E-value=0.00019  Score=72.51  Aligned_cols=135  Identities=14%  Similarity=0.208  Sum_probs=103.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (374)
Q Consensus       230 ~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~  309 (374)
                      ..|+.++++.|...++++..+.+=.|..++|+ .+.++++-++++.++.++.. .+..-+....-+.-++..-.+|.   
T Consensus        27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~-~~~~gl~~g~~~lvsq~~Ga~~~---  101 (478)
T PRK10189         27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIM-AFFAAIDLGTTVVVAFSLGKRDR---  101 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCH---
Confidence            35899999999999999999999999999998 57789999999999976543 45556777788888888766554   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc----hHHHHHHHHHHHHHhhc
Q 017298          310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAM  371 (374)
Q Consensus       310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~----~~~il~~~~~~~~~~~~  371 (374)
                      ++.++..+..+.+...+++++..+....+++++.++.|..  |.+    ...++.+.+...|+.++
T Consensus       102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~~v~~~a~~Yl~i~~~~~~~~~~  165 (478)
T PRK10189        102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDA--TPEVKALALTYLELTVWSYPAAAI  165 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555677878888888888877777778889988775211  221    23577777776666654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=97.52  E-value=0.00092  Score=66.86  Aligned_cols=136  Identities=18%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHH
Q 017298          232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  311 (374)
Q Consensus       232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~  311 (374)
                      |++++++.|...++++..+.+=.|.+++|++.+.++++-++++.++-+... .+..-+....-+.-++..-++|.   ++
T Consensus         9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~---~~   84 (441)
T PRK10367          9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLF-MLLLFLRMSTTGLTAQAFGAKNP---QA   84 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HH
Confidence            889999999999999999999999999999878888999999988876554 44445667777888888766554   55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          312 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       312 ~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      .++..++.+.....+++++..++....++++.++..+.=......+++.+++...|+..+
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~  144 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLA  144 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888888888888888887777777787775543321111123678877777666554

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.49  E-value=0.0001  Score=62.56  Aligned_cols=127  Identities=17%  Similarity=0.198  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (374)
Q Consensus       240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~  319 (374)
                      |...+.++..+....|..+++++ |.++++.|+++.++.+... .+...+.+..-+..++...++|.++.++   .++..
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~-~~~~g~~~a~~~~~s~~~G~~~~~~~~~---~~~~~   75 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILF-MLIFGLATALQILISQNIGAGDYKRAKK---VVRQG   75 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCSSSTTTCCC---HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHh-hhcccccccccceeeccccccccccccc---ccccc
Confidence            56788899999999999999999 9999999999999998655 5777899999999999887766655444   78888


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +.+...+++++..+....++++..++..++=.-......+.+.+...|+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (162)
T PF01554_consen   76 LLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFAL  127 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHH
Confidence            8999888888888877777777776544431111123455555655555443

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=97.33  E-value=0.0018  Score=65.21  Aligned_cols=128  Identities=16%  Similarity=0.110  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298          237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL  316 (374)
Q Consensus       237 f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~  316 (374)
                      =..|.+..+++..+.+=.|+.++++..++++.|.|+.+..+-+....+...-+....-+..++...++|+   ++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~---~~~~~~~   80 (488)
T TIGR02900         4 GTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDR---KNIKKIL   80 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccch---hhHHHHH
Confidence            3578899999999999999999999999999999999999877666555456777777777776544443   4455577


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +........+++++.......++.+...++++.   . ....+++++...|+.++
T Consensus        81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~---~-~~~~l~~~~~~~~~~~~  131 (488)
T TIGR02900        81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE---R-SLYSLLVICPAMPFIAL  131 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh---h-HHHHHHHHHHHHHHHHH
Confidence            777777767776666555556666665554432   1 11356666666665544

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=97.32  E-value=0.0022  Score=64.41  Aligned_cols=137  Identities=20%  Similarity=0.190  Sum_probs=108.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (374)
Q Consensus       230 ~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~  309 (374)
                      ..|++++++.|+..++++..+.+-.|.+++|++. .++++-=++++.+-.++. .+..-+.-..-+..+|..-.||+   
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~~~---   89 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAGDR---   89 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCCch---
Confidence            3489999999999999999999999999999998 778888888887777655 55557888888999998776555   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      ++.++..++.+-...+++++........+++++.++.+++=....+..++++.+.-.|++.+
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            55666888899989899988888888899999999887431222234677777776666554

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=97.20  E-value=0.0029  Score=63.68  Aligned_cols=132  Identities=16%  Similarity=0.043  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (374)
Q Consensus       231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~  310 (374)
                      .|++++.+.|...+++..++.+-.|.+++|++ +.++++-++++.++-+... .+..-+....-+..++..-++|.   +
T Consensus         9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~---~   83 (464)
T PRK00187          9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDI---E   83 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---h
Confidence            38899999999999999999999999999995 7788999999999977654 44566777888889998876655   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc---hHHHHHHHHHHHHHhhc
Q 017298          311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAM  371 (374)
Q Consensus       311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~---~~~il~~~~~~~~~~~~  371 (374)
                      +.++.++..+.....++++...... .+++++.++ |.+  +..   .-.++++++...|.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~-~~~--~ev~~~~~~Yl~i~~~~~~~~~l  143 (464)
T PRK00187         84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLF-GQA--PQNVDAAMQFLHLLPFALPGYLS  143 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666788788888777777666654 678887755 442  211   23677777776666554

>PRK15099 O-antigen translocase; Provisional

Probab=97.07  E-value=0.19  Score=49.68  Aligned_cols=188  Identities=13%  Similarity=0.039  Sum_probs=95.9

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh----cccccCCCccch
Q 017298           10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RADIKCDGASRE   85 (374)
Q Consensus        10 ~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali----r~~~~~~~~~~~   85 (374)
                      +++.+=..+....+....+.+.+.+.++.+..++++-|.++...-+........ -.++.++..    +.++.+      
T Consensus       215 k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~-~~~~~~a~~P~~s~~~~~~------  287 (416)
T PRK15099        215 GQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFI-TASFSVYLLPTLSRLTEKR------  287 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChH------
Confidence            445566678889999999999999999999999999999988766533222222 244554443    221111      


Q ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcchh---HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298           86 ENAAKLLK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPYA---QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (374)
Q Consensus        86 ~~~~~~~~-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~  161 (374)
                       +..+.+. ......+.++..++++.++........+++++.   +.+..++++.++.......-.....+.+.+.....
T Consensus       288 -~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  366 (416)
T PRK15099        288 -DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILA  366 (416)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1112222 222333444444444444444443445666542   45566666766665533321112222233333333


Q ss_pred             hhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHH
Q 017298          162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYW  205 (374)
Q Consensus       162 ~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~  205 (374)
                      +....++.......++-.+.-....|+.++++.+......+.++
T Consensus       367 ~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        367 EVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333322221112336777777776655444433

>PRK10459 colanic acid exporter; Provisional

Probab=96.81  E-value=0.22  Score=50.25  Aligned_cols=177  Identities=14%  Similarity=0.044  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHH----HHhcccccCCCccchhhHH
Q 017298           14 RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR----ACMRADIKCDGASREENAA   89 (374)
Q Consensus        14 ~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~----alir~~~~~~~~~~~~~~~   89 (374)
                      +=..|.+..++.....+-+-+.++.+.++|++.|.++.+..+.......++ ..+.+    ..-+.++++ + +-++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~-~~i~~v~~P~~s~~~~~~-~-~~~~~~~  287 (492)
T PRK10459        211 SFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKIN-PIITRVAFPVFAKIQDDT-E-KLRVGFL  287 (492)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHhcCCH-H-HHHHHHH
Confidence            334577777777777777778899999999999999987665433222222 11111    111221111 1 0111223


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH
Q 017298           90 KLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA  165 (374)
Q Consensus        90 ~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~  165 (374)
                      +..... +..+|..    +.+..+++......+++.+   .+.+.++++..++..+..+....++-..+-|...+.+...
T Consensus       288 ~~~~~~~~~~~p~~----~~l~~~a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~  363 (492)
T PRK10459        288 KLLSVLGIINFPLL----LGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK  363 (492)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHhHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH
Confidence            332222 2333332    2222232222222345544   3667888888888888877665555555555555555444


Q ss_pred             HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHH
Q 017298          166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLF  201 (374)
Q Consensus       166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~  201 (374)
                      .++........  .  ..+++.+.+++..+...+.+
T Consensus       364 ~~~~i~~~~~~--~--~~~G~~g~a~a~~i~~~~~~  395 (492)
T PRK10459        364 TFLFIPAIVIG--G--QLAGLIGVALGFLLVQIINT  395 (492)
T ss_pred             HHHHHHHHHHH--H--hhccHHHHHHHHHHHHHHHH
Confidence            33333221111  1  11456666666655554433

>TIGR01695 mviN integral membrane protein MviN

Probab=96.60  E-value=0.93  Score=45.71  Aligned_cols=159  Identities=11%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh----cccccCCCccchhh
Q 017298           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RADIKCDGASREEN   87 (374)
Q Consensus        12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali----r~~~~~~~~~~~~~   87 (374)
                      ..+=..+....+......+.+-+. +.+.+++++.|.++.+..+.......+. .++..+..    |+..++|    .++
T Consensus       225 ~l~~~~p~~~~~~~~~~~~~id~~-~~~~~~~~~v~~~~~a~~l~~~~~~~~~-~~i~~~~~P~~s~~~~~~~----~~~  298 (502)
T TIGR01695       225 FLKLFLPTTLGSSASQITLLINTA-LASFLEIGSVSALYYANRIYQLPLGIFG-ISLSTVLLPKLSRHASEGN----WNE  298 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC----HHH
Confidence            344445667777777777776665 4888999998888876544322211121 23333322    2221111    112


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCC----c-c-h---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 017298           88 AAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYS----N-P-Y---AQAIFINGFACVLELLAEPLYILSQNLLLLRL  157 (374)
Q Consensus        88 ~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~----~-~-~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~  157 (374)
                      .++.+... ......++.+++.+..+........++    + + .   .+.+.+++++.++.++..+....++-.-|-|.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~  378 (502)
T TIGR01695       299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT  378 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence            33333322 222333444444333333222222233    1 1 1   25577888888888887777666666667777


Q ss_pred             hhhhhhhHHHHhHHHHhhh
Q 017298          158 RLVVETVATFSRCFTMCIL  176 (374)
Q Consensus       158 ~~~~~~~~~~~~~~~~i~l  176 (374)
                      ..+.+....+++......+
T Consensus       379 ~~~~~~~~~~i~i~l~~~l  397 (502)
T TIGR01695       379 PFINSVISVVLNALLSLLL  397 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            7777777766665554444

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=96.32  E-value=0.41  Score=48.09  Aligned_cols=164  Identities=20%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHH
Q 017298           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~   91 (374)
                      ..+-............+.+-+=+.++.+.++|++.|+++.+..+. .....+. ..+..++.-.-.+..++.|.+..++.
T Consensus       215 ~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~-~~~~~~~-~~l~~~l~P~~s~~~~~~~~~~~~~~  292 (480)
T COG2244         215 LLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV-SLLLIVA-SALNRVLFPALSRAYAEGDRKALKKL  292 (480)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHH-HHHHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            344455667788888888889999999999999999999544433 3333333 34444444221110000111121122


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhhcccCCcch---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHH
Q 017298           92 LKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF  167 (374)
Q Consensus        92 ~~~~~-~~i~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~  167 (374)
                      .+... .....++...+.+..+........+++++   .+.+.++++..++..+..+....++-..+.+...+....+.+
T Consensus       293 ~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i  372 (480)
T COG2244         293 LRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISAL  372 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence            22111 11122222222222222222233456654   467888999999999999988888887888888888887777


Q ss_pred             HhHHHHhhhh
Q 017298          168 SRCFTMCILI  177 (374)
Q Consensus       168 ~~~~~~i~l~  177 (374)
                      .+.+....++
T Consensus       373 ~~~~l~~~li  382 (480)
T COG2244         373 LNLILNLLLI  382 (480)
T ss_pred             HHHHHHhHHH
Confidence            7777766553

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=95.08  E-value=0.054  Score=45.62  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh---cccccCCCccchhhHHHHHH-HH
Q 017298           20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDGASREENAAKLLK-VA   95 (374)
Q Consensus        20 ~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali---r~~~~~~~~~~~~~~~~~~~-~~   95 (374)
                      .+.++.......+.+.++.|+ ++++.+.+++...+...... + -.|+..+..   .+.-.+++.+   +..+.+. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~-~~g~~~a~~~~~s~~~G~~~~~---~~~~~~~~~~   76 (162)
T PF01554_consen    3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-L-IFGLATALQILISQNIGAGDYK---RAKKVVRQGL   76 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-H-HHHHHHHHHHHHCCCCCSSSTT---TCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-h-cccccccccceeeccccccccc---cccccccccc
Confidence            456777778888888888888 99999999997766544432 2 255554443   2221111111   1112222 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhh
Q 017298           96 WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV  164 (374)
Q Consensus        96 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~  164 (374)
                      ++++..++.+++....+...+...+.+++.     ...++..++..++.++.+.....+|-..+.|.-...+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  150 (162)
T PF01554_consen   77 LLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISII  150 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHH
T ss_pred             ccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence            455556666655544332222232233332     244566666666666555443334444444444444333

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=94.96  E-value=0.64  Score=47.23  Aligned_cols=137  Identities=14%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-ccchHHHHHhhhhhhHHHHhhhhh-hhhhHHHHHHHhcCCCchhh
Q 017298          232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS  309 (374)
Q Consensus       232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~-~~~G~Y~~a~~l~sl~~r~i~~pi-~~~~~p~fs~~~~~~~~~~~  309 (374)
                      +.+++=...+....++..++-=.-..+++..+|. ...--|++|+++.++.-|++.... +++.-|.|.|..+++++++.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            4566666777777777777777777888888886 677789999999999888877665 78888999998766544344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc---hHHHHHHHHHHHHHhhc
Q 017298          310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAM  371 (374)
Q Consensus       310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~---~~~il~~~~~~~~~~~~  371 (374)
                      ++.++...   -....+.+.+...+...++.+++.++++.|.+.+   +....++...|++++.+
T Consensus        87 ~~f~~~v~---~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL  148 (518)
T COG0728          87 RFFSRLVT---GLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISL  148 (518)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            44333322   2333344444444555666888789999872222   22345666667666553

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=94.72  E-value=3.9  Score=38.71  Aligned_cols=163  Identities=10%  Similarity=0.018  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhc---ccCc---chhHHHHHHHHHHHHHH
Q 017298          127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVK---QYEM---EKGIVFALSQVAYAASL  200 (374)
Q Consensus       127 ~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~---~~~~---~~v~a~~~~qi~~~~~~  200 (374)
                      .+...+.+-.++.++...+..++.|+ |....+-.+.++.++.-++.+.....   ....   -++.++..++.+-.-+.
T Consensus       130 ~a~l~L~llPfl~alr~~~qGILik~-r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v  208 (345)
T PF07260_consen  130 RAFLYLTLLPFLDALRWIHQGILIKH-RHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIV  208 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhc-cceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999988876566554 55544444444433333332222221   1110   13466677776666555


Q ss_pred             HHHHHHHHhhhcccccCcccccccCC---cccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-----ccchHHH
Q 017298          201 FLGYWGYFLLFGAFKTSDLFPFRLGN---MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-----YNQAVYG  272 (374)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~-----~~~G~Y~  272 (374)
                      +++||.-.        .+..|.+++.   +...-+.+++|.+|+......+.+.+-.-++++.+-.+-     +.+.+-.
T Consensus       209 ~LGy~~~i--------~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~  280 (345)
T PF07260_consen  209 CLGYYQSI--------HDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLT  280 (345)
T ss_pred             HHHHHHHH--------hhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhc
Confidence            56666311        1123333221   112236799999999999999999999999999996543     4556666


Q ss_pred             HHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298          273 LVDKLGSLVVRMVFLPFEESSYATFARS  300 (374)
Q Consensus       273 ~a~~l~sl~~r~i~~pi~~~~~p~fs~~  300 (374)
                      ..|..|-.+..-+..  -++.+|.|-|.
T Consensus       281 ~~ypvgh~~y~w~~~--~r~~~paf~~~  306 (345)
T PF07260_consen  281 ATYPVGHMPYGWLTE--LRAVYPAFDKN  306 (345)
T ss_pred             cccCCCcCcchhHHh--HHhhCchhhcc
Confidence            666666555433321  23445555444

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=94.18  E-value=6.9  Score=39.25  Aligned_cols=192  Identities=13%  Similarity=0.043  Sum_probs=96.7

Q ss_pred             cchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH----hcccccCCCcc
Q 017298            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC----MRADIKCDGAS   83 (374)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al----ir~~~~~~~~~   83 (374)
                      ..++..|-....+++....++-. .+.-.++..++|..-...+-+..+.......+. .++..+.    -|+..++|+++
T Consensus       196 ~~~~~~~~~~p~~l~~~~~qi~~-lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~-~~i~tv~~P~ls~~~~~~d~~~  273 (451)
T PF03023_consen  196 NLKRFLKLAIPLLLSSSISQINI-LVDRALASFLGEGSVSALNYAQRLYQLPLGIFA-VSISTVVFPKLSRLAAEGDWEE  273 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHH
Confidence            34567777788888888888544 445566666777543333333222221111111 2222222    12221111110


Q ss_pred             chhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhcccCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 017298           84 REENAAKLLKVAW-LTLPLGIFITIGACFFVL-WWQGLSYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRL  157 (374)
Q Consensus        84 ~~~~~~~~~~~~~-~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~  157 (374)
                      -.+...+.+.... +.+|..+.+.+...-+.- .+..-.++...    ..++..++++++..++.......+.-+.|-|.
T Consensus       274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~  353 (451)
T PF03023_consen  274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT  353 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence            0112222222221 223332222211111100 11111133322    35688999999999887777666666677788


Q ss_pred             hhhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHH
Q 017298          158 RLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYW  205 (374)
Q Consensus       158 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~  205 (374)
                      -+.....+.+++.+..+.+...    +++.+.+.+..+.+.+.++..+
T Consensus       354 ~~~~~~~~~~lni~l~~~l~~~----~g~~Glala~sl~~~i~~~~l~  397 (451)
T PF03023_consen  354 PVRISVISVVLNIILSILLVPF----FGVAGLALATSLSAIISALLLY  397 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877776554222    5677777777777766554433

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=88.57  E-value=2.6  Score=37.81  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             hhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhh
Q 017298          256 KLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES  292 (374)
Q Consensus       256 ~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~  292 (374)
                      .+++++..+++|.|.|+.+.++.++.........++.
T Consensus         8 ~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~   44 (251)
T PF13440_consen    8 LILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQS   44 (251)
T ss_pred             HHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999987775554445443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=87.09  E-value=5.3  Score=36.01  Aligned_cols=64  Identities=14%  Similarity=0.075  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHh
Q 017298          238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA  301 (374)
Q Consensus       238 ~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~  301 (374)
                      ..+.....++..+..=.-..++.+..|+++.|.|+.+.++.++..-+...-+++...-..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~   68 (273)
T PF01943_consen    5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK   68 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            4456667777777777788999999999999999999999988776656667666655555543

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=82.93  E-value=24  Score=28.71  Aligned_cols=69  Identities=16%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHH
Q 017298          129 IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLF  201 (374)
Q Consensus       129 l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~  201 (374)
                      +++++++.++.++..+....++-..|.|...+.+..+.+++....+.++..    +|..+.+.+..+..++.+
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~----~G~~Gaa~a~~i~~~~~~   70 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR----FGIYGAAIATAISEIVSF   70 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHH
Confidence            456888888999888888888888888888888888888888887776322    345555555555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.87
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	98.08

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.87  E-value=9.3e-20  Score=179.94  Aligned_cols=354  Identities=13%  Similarity=0.064  Sum_probs=241.2

Q ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhH
Q 017298            9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA   88 (374)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~   88 (374)
                      -++..|.+.+.+++++.+++.+++.+.++.| ++||++|.+++...+.. ....+. .|+..+....-.+...++|.++.
T Consensus        11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~-~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A           11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFG-VGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHH-HHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHcCCChhHH
Confidence            4566788899999999999999999999999 89999999999877643 323333 67777766432221111122233


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhh
Q 017298           89 AKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVE  162 (374)
Q Consensus        89 ~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~  162 (374)
                      .+..+.. +.....++.++++ ..+..........++.     ...+.+++++.++..+.......+|.+.+.|......
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  166 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG  166 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            4444444 3444445554433 2222222222222332     1345667777777777766666677778888888888


Q ss_pred             hhHHHHhHHHHhhhhhc-c--cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHH
Q 017298          163 TVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT  239 (374)
Q Consensus       163 ~~~~~~~~~~~i~l~~~-~--~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~  239 (374)
                      ..+.+++.+....++.. .  ++ +++.+.+++..+..++..+..+.+.++++..+..+..+.....+....|++++++.
T Consensus       167 ~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          167 FIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            88888888887776543 1  12 56666666666665554443332222221111101111111112234488999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (374)
Q Consensus       240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~  319 (374)
                      |...+++...+.++.|+.+++++ |.++.|.|++++++.+++. .+...+.++..|..++...++|.++.++   .+++.
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~~~~---~~~~~  320 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAAI---AANVG  320 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTTT---HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHH
Confidence            99999999999999999999999 9999999999999999877 7777999999999999987766655544   78889


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298          320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN  372 (374)
Q Consensus       320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N  372 (374)
                      ++....+++|+.......+++++.++.+|+..-....+++.+++...++.+++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  373 (460)
T 3mkt_A          321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ  373 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888999999998877643222346888888888777664

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=98.08  E-value=2.2e-06  Score=83.75  Aligned_cols=135  Identities=10%  Similarity=0.032  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (374)
Q Consensus       231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~  310 (374)
                      .|++++++.|++.++++..+.+..|++++|+ .|+++.|.|+++.++... ...+...+.....|..++...++|++   
T Consensus        11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~~---   85 (460)
T 3mkt_A           11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQH---   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSSTT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChh---
Confidence            3789999999999999999999999999999 899999999999999664 44566778888888888876655543   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298          311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM  371 (374)
Q Consensus       311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~  371 (374)
                      +.++.++..+.....+++++... ...+++++..+.+++-........+++++...|+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~  145 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLL  145 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44457777888887777776554 5566777765433321101112345555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00