Citrus Sinensis ID: 017340

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---

MEVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINLKGNKGES

ccccEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEEccccEEEcccccccEEEEccccccHHHHHHHHHcccHHHHHHHHHcccccccccEEEccccHHHHHHHHHcccccccEEEEEEccccccccEEEccccccccccccccccccHHHHHHHHHHHHHcccccccc

ccccEEEHHHHHcccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEcccccccEcccccccHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHccccccEEEEEcccHHHHHEcccccccccEEEEccccEEEEcccccEEEEEccHHHcccccccccEEcHHHHHHHHHHcccEccccEEEEccHHHHHHHcccccccccEEEEEccHEccccccccEccccHccccccccccccccHHHHHHHHHHHHccccccccc

MEVPVIDLAAYLsagegevgsEVSELCREVSGILRETgallvkdprctvednDRFLDMMEKYFespfhfkrlqerpnlhyqvgvtpegveiprslVDEEMQEKFRampkesqpsipigpdpkwrymwrvgprpsntrfqelnsepvipdgfpewKETMDSWGHKMISAIEVVAEMAAIgfglpkdaftslmkqgphllaptgcdlrrygkegtvfagyhydlnfltihgrsrfpglniwlrngkkvevkVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASdavlkplghfaesplsrkyppicagefVEQELAVINLKGNKGES

MEVPVIDLAAylsagegevgseVSELCREVSGILretgallvkdprctvEDNDRFLDMMEKYFESPFHFKRLQERPNLhyqvgvtpegveiprSLVDEEMQEKframpkesqpsipigpdpkWRYMWRVGPRPsntrfqelnsepvipdgfpEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINlkgnkges

MEVPVIDLAAYLSAgegevgsevseLCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINLKGNKGES

****VIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPE**********************************KWRYMWRVG***************VIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINL*******

MEVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYG*****FAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTID*********RSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVI**K******

MEVPVIDLAAYLSA**********ELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEK*********PSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINLKGNKGES

*EVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINLK******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		373
255544288		361	conserved hypothetical protein [Ricinus	0.951	0.983	0.802	1e-176
224059666		368	predicted protein [Populus trichocarpa]	0.951	0.964	0.777	1e-173
225450201		365	PREDICTED: uncharacterized protein LOC10	0.949	0.969	0.774	1e-171
449501563		363	PREDICTED: uncharacterized protein LOC10	0.951	0.977	0.757	1e-166
297795409		355	hypothetical protein ARALYDRAFT_917648 [	0.951	1.0	0.764	1e-166
449463773		363	PREDICTED: uncharacterized protein LOC10	0.951	0.977	0.755	1e-166
356544196		346	PREDICTED: uncharacterized protein LOC10	0.927	1.0	0.767	1e-165
18422862		355	dioxygenase-like protein [Arabidopsis th	0.951	1.0	0.756	1e-165
217074286		352	unknown [Medicago truncatula] gi\|3885222	0.943	1.0	0.745	1e-162
357137305		358	PREDICTED: uncharacterized protein LOC10	0.946	0.986	0.733	1e-160

>gi\|255544288\|ref\|XP_002513206.1\| conserved hypothetical protein [Ricinus communis] gi\|223547704\|gb\|EEF49197.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/379 (80%), Positives = 326/379 (86%), Gaps = 24/379 (6%)

Query: 1   MEVPVIDLAAYLSAGEGEVGS------EVSELCREVSGILRETGALLVKDPRCTVEDNDR 54
           M++PVIDL  YL   +   G       EV ELC+EVS ILRETGAL+VKDPRC+ EDNDR
Sbjct: 1   MDIPVIDLTRYLEIADKLSGEPVKLCGEVEELCKEVSRILRETGALVVKDPRCSSEDNDR 60

Query: 55  FLDMMEKYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPS 114
           F+DMMEKYFESP  FK+LQERP+LHYQVGVTPEGVE+PRSLVDEEMQEK +AMPK+ QPS
Sbjct: 61  FIDMMEKYFESPLQFKKLQERPHLHYQVGVTPEGVEVPRSLVDEEMQEKLKAMPKQFQPS 120

Query: 115 IPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAE 174
            P GPD KWRYMWRVG RPSNTRF+ELNSEPV+P+GFPEWKETMDSWGHKMISAIE VAE
Sbjct: 121 TPKGPDRKWRYMWRVGSRPSNTRFKELNSEPVVPEGFPEWKETMDSWGHKMISAIEAVAE 180

Query: 175 MAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFP 234
           MAAIGFGLPKDAFTSLMKQGPHLLAPTG DLR YG+EGTVFAGYHYDLNFLTIHGRSRFP
Sbjct: 181 MAAIGFGLPKDAFTSLMKQGPHLLAPTGSDLRCYGEEGTVFAGYHYDLNFLTIHGRSRFP 240

Query: 235 GLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMH 294
           GLNIWLRNG+KVEVKVP+GCLLIQTGKQ                  IEWLTAGDC+AGMH
Sbjct: 241 GLNIWLRNGQKVEVKVPLGCLLIQTGKQ------------------IEWLTAGDCIAGMH 282

Query: 295 EVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAG 354
           EV+VT RT DAIK ASE N SLWRVSSTLFAHIASDAVL+PLGHFAESPL+ KYPPICAG
Sbjct: 283 EVVVTKRTTDAIKLASEQNLSLWRVSSTLFAHIASDAVLQPLGHFAESPLASKYPPICAG 342

Query: 355 EFVEQELAVINLKGNKGES 373
           EFVEQELAVINLKGNKGES
Sbjct: 343 EFVEQELAVINLKGNKGES 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224059666\|ref\|XP_002299960.1\| predicted protein [Populus trichocarpa] gi\|222847218\|gb\|EEE84765.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225450201\|ref\|XP_002264792.1\| PREDICTED: uncharacterized protein LOC100240969 [Vitis vinifera] gi\|297736215\|emb\|CBI24853.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449501563\|ref\|XP_004161404.1\| PREDICTED: uncharacterized protein LOC101225693 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297795409\|ref\|XP_002865589.1\| hypothetical protein ARALYDRAFT_917648 [Arabidopsis lyrata subsp. lyrata] gi\|297311424\|gb\|EFH41848.1\| hypothetical protein ARALYDRAFT_917648 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449463773\|ref\|XP_004149606.1\| PREDICTED: uncharacterized protein LOC101207443 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356544196\|ref\|XP_003540540.1\| PREDICTED: uncharacterized protein LOC100790594 [Glycine max]	Back alignment and taxonomy information

>gi|18422862|ref|NP_568689.1| dioxygenase-like protein [Arabidopsis thaliana] gi|10177753|dbj|BAB11066.1| unnamed protein product [Arabidopsis thaliana] gi|21593557|gb|AAM65524.1| unknown [Arabidopsis thaliana] gi|30725300|gb|AAP37672.1| At5g48020 [Arabidopsis thaliana] gi|110743713|dbj|BAE99693.1| hypothetical protein [Arabidopsis thaliana] gi|332008228|gb|AED95611.1| dioxygenase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|217074286\|gb\|ACJ85503.1\| unknown [Medicago truncatula] gi\|388522245\|gb\|AFK49184.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357137305\|ref\|XP_003570241.1\| PREDICTED: uncharacterized protein LOC100837486 [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		373
TAIR\|locus:2162682		355	AT5G48020 "AT5G48020" [Arabido	0.710	0.746	0.769	1.3e-152
DICTYBASE\|DDB_G0267528		345	DDB_G0267528 [Dictyostelium di	0.678	0.733	0.513	1.9e-89

TAIR\|locus:2162682 AT5G48020 "AT5G48020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1125 (401.1 bits), Expect = 1.3e-152, Sum P(2) = 1.3e-152
 Identities = 204/265 (76%), Positives = 225/265 (84%)

Query:     1 MEVPVIDLAAYLSAXXXXXXXXXXXLCREVSGILRETGALLVKDPRCTVEDNDRFLDMME 60
             ME+PV+DL++YL              CR+VS IL+ETGAL+VKDPRC  +DNDRF+DMME
Sbjct:     1 MELPVVDLSSYLDFSGDELGSDLLESCRQVSRILKETGALIVKDPRCCAQDNDRFIDMME 60

Query:    61 KYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPD 120
              YFE P  FKRLQ+RPNLHYQVG TPEGVE+PRSLVDEEMQEKF  MP E +P IP GPD
Sbjct:    61 NYFEKPDDFKRLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTMPNEYKPHIPKGPD 120

Query:   121 PKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGF 180
              KWRYMWRVGPRPSNTRF+ELNSEPV+P+GFP W+E MDSWG+KMISA+EVVAEMAAIGF
Sbjct:   121 HKWRYMWRVGPRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMISAVEVVAEMAAIGF 180

Query:   181 GLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWL 240
             GLPKDAFTSLMKQGPHLLAPTG DL  Y +EGT+FAGYHYDLNFLTIHGRSRFPGL IWL
Sbjct:   181 GLPKDAFTSLMKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTIHGRSRFPGLYIWL 240

Query:   241 RNGKKVEVKVPVGCLLIQTGKQASW 265
             RNG+KV VKVPVGCLLIQ GKQ  W
Sbjct:   241 RNGEKVAVKVPVGCLLIQAGKQIEW 265

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE\|DDB_G0267528 DDB_G0267528 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		373
COG3491		322	COG3491, PcbC, Isopenicillin N synthase and relate	2e-14

>gnl\|CDD\|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 66/340 (19%), Positives = 106/340 (31%), Gaps = 66/340 (19%)

Query: 1   MEVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMME 60
            ++P+IDL+       G        + +E+    RE G   + +        D    +  
Sbjct: 4   RDLPIIDLSEL----AGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALAR 59

Query: 61  KYFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPD 120
           ++F  P   K            G TP G E                  KE    + +GPD
Sbjct: 60  QFFALPVEEKLKILMVLGRQHRGYTPHGGE----------LTDGEPDYKEG---LDMGPD 106

Query: 121 PKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGF 180
                   +    + T     N  P IP      ++ +  +   M +    +    A+G 
Sbjct: 107 ----LDAELAGVRAGTPLHGPNLWPAIP----GLRDALLQYYRAMTAVGLRLLRAIALGL 158

Query: 181 GLPKDAFTSLMKQGPHLLAPTGCDLRRY----GKEGTVFAGYHYDLNFLTIHGRSRFPGL 236
            LP+D F         +       L RY     +EG    G H D   LT+  +    GL
Sbjct: 159 DLPEDFFDKRTSDPNSV-----LRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGL 213

Query: 237 NIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEV 296
            +   NG  ++V    G L++               + D    ++E  T G   + +H V
Sbjct: 214 EVRPPNGGWLDVPPIPGTLVV--------------NIGD----MLERWTNGRLRSTVHRV 255

Query: 297 IVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPL 336
                 +D             R S   F     DA + PL
Sbjct: 256 R-NPPGVD-------------RYSIPFFLEPNFDAEIAPL 281

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		373
PTZ00273		320	oxidase reductase; Provisional	100.0
COG3491		322	PcbC Isopenicillin N synthase and related dioxygen	100.0
PLN02485		329	oxidoreductase	100.0
PLN02276		361	gibberellin 20-oxidase	100.0
PLN03002		332	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02216		357	protein SRG1	100.0
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02997		325	flavonol synthase	100.0
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	100.0
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	100.0
PLN02254		358	gibberellin 3-beta-dioxygenase	100.0
PLN02393		362	leucoanthocyanidin dioxygenase like protein	100.0
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02904		357	oxidoreductase	100.0
PLN02704		335	flavonol synthase	100.0
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02947		374	oxidoreductase	100.0
PLN02156		335	gibberellin 2-beta-dioxygenase	100.0
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	100.0
PLN02365		300	2-oxoglutarate-dependent dioxygenase	100.0
KOG0143		322	consensus Iron/ascorbate family oxidoreductases [S	100.0
PLN02403		303	aminocyclopropanecarboxylate oxidase	100.0
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PF14226		116	DIOX_N: non-haem dioxygenase in morphine synthesis	99.89
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	99.84
PLN03176		120	flavanone-3-hydroxylase; Provisional	99.72
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	95.59
PF12851		171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	89.25
TIGR02466		201	conserved hypothetical protein. This family consis	87.9
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	86.98
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	83.81
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	81.44

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.9e-71  Score=540.83  Aligned_cols=307  Identities=20%  Similarity=0.271  Sum_probs=266.1

Q ss_pred             CCCcEEecCccccCCCCCCchhHHHHHHHHHHHhhhccEEEEEcCCCChHHHHHHHHHHHHhhCCCHhhhhhhccCCCCC
Q 017340            1 MEVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHY   80 (373)
Q Consensus         1 ~~iPvIDl~~l~~~~~~~~~~~r~~~~~~l~~A~~~~Gff~l~nhGi~~~~~~~~~~~a~~fF~lP~e~K~~~~~~~~~~   80 (373)
                      ++||||||+.+.+++    ++++.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...+...
T Consensus         4 ~~iPvIDl~~~~~~~----~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~   79 (320)
T PTZ00273          4 ASLPVIDVSPLFGGE----SAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRL   79 (320)
T ss_pred             CCCCEEecHHhcCCC----hHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCC
Confidence            479999999997665    4678889999999999999999999999999999999999999999999999997654455


Q ss_pred             ceecccCCcccCcCcchhHHHHHHhcCCCCCCCCCCCCCCCccccceecCCC-CCCc----ccccCCCCCCCCCCChhhH
Q 017340           81 QVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPR-PSNT----RFQELNSEPVIPDGFPEWK  155 (373)
Q Consensus        81 ~~GY~~~g~e~~~~~~d~~~~e~~~~~~~~~~~~~~~~~D~k~~~~~~~~~~-p~~~----~~~~~~~~n~wP~~~p~fr  155 (373)
                      ++||.+.+.|.....                     ...|.|  |.|.++.. |.+.    ....+.++|.||+.+|+||
T Consensus        80 ~~GY~~~~~e~~~~~---------------------~~~d~k--E~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr  136 (320)
T PTZ00273         80 HRGYGAFGAEQLDPS---------------------KPYDYK--ETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWM  136 (320)
T ss_pred             CCCCCCccccccCCC---------------------CCCCcc--ceEEeeccCCcccchhhccccccCCCCCCCcchHHH
Confidence            799998877653210                     234555  55555532 2111    1123567899999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHhhhhcCCCcccccCCCCCcCCCCCCceeeeccCCCCcEEEEecCCCCc
Q 017340          156 ETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPG  235 (373)
Q Consensus       156 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrp~~~~~~~~~~~~~~~~~~HtD~g~lTlL~qd~~~G  235 (373)
                      +.+++|++.|.+++..|+++||++||+++++|.+.+..+.+.||..+|+.....++..+|+++|||+|+||||+||.++|
T Consensus       137 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~G  216 (320)
T PTZ00273        137 ELMETHYRDMQALALVLLRALALAIGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGG  216 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCc
Confidence            99999999999999999999999999999999999888778899888876543345689999999999999999999999


Q ss_pred             eeEEecCCcEEEeecCCCeEEEEeCCCCchhHHHHHHhhccccchhhhhcCCceecccceeeccCcchhhhhhhhccCCC
Q 017340          236 LNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRS  315 (373)
Q Consensus       236 LqV~~~~G~W~~V~~~~g~lvVniGd~~~~~~~~~~~~~~~~~~~l~~~TnG~~~st~HRV~~~~~~~~~~~~~~~~~~~  315 (373)
                      |||++++|+|++|+|.||++|||+||+                  ||+||||+||||+|||+.+..              
T Consensus       217 LqV~~~~g~Wi~V~p~pg~lvVNvGD~------------------l~~~TnG~~kSt~HRVv~~~~--------------  264 (320)
T PTZ00273        217 LQVRNLSGEWMDVPPLEGSFVVNIGDM------------------MEMWSNGRYRSTPHRVVNTGV--------------  264 (320)
T ss_pred             eEEECCCCCEEeCCCCCCeEEEEHHHH------------------HHHHHCCeeeCCCccccCCCC--------------
Confidence            999988999999999999999999999                  999999999999999985532              


Q ss_pred             CceeEEEEeeecCCCceeecCCcccCCCCCCCCCCccHHHHHHHHHHHHhhc
Q 017340          316 LWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYPPICAGEFVEQELAVINLK  367 (373)
Q Consensus       316 ~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~y~~it~~e~~~~~~~~~~~~  367 (373)
                       +||||+||++|+.|++|.|+++|+++++|++|++++++||+..|+...+..
T Consensus       265 -~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~y~~~~~~e~~~~~~~~~~~~  315 (320)
T PTZ00273        265 -ERYSMPFFCEPNPNVIIKCLDNCHSEENPPKYPPVRAVDWLLKRFAETYAY  315 (320)
T ss_pred             -CeEEEEEEEcCCCCceEecCccccCCCCcccCCceeHHHHHHHHHHHHHHH
Confidence             799999999999999999999999998999999999999999999988764

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02216 protein SRG1	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02997 flavonol synthase	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02393 leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]	Back alignment and domain information

>PLN02403 aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PLN03176 flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []	Back alignment and domain information

>TIGR02466 conserved hypothetical protein	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		373
3oox_A		312	Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas		2e-07

>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312

Back alignment and structure

Iteration: 1

Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 52/246 (21%) Query: 133 PSNTRFQELNSEPVIPDGFPEWK-------ETMDSWGHKMISAIEVVAEMAAIGFGLPKD 185 P RF+ ++ V P P +K ++D G K++ AI A L +D Sbjct: 106 PPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAI-------ATYLKLERD 158 Query: 186 AFTSLMKQGPHLLAPTGCDLRRYG---KEGT-VFAGYHYDLNFLTIHGRSRFPGLNIWLR 241 F ++ G +L L Y K+ T V AG H D+N +T+ + GL + R Sbjct: 159 FFKPTVQDGNSVLR-----LLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR 213 Query: 242 NGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSR 301 +G+ + + P GCL+I G +E LT + +H V+ Sbjct: 214 DGQWLPINPPPGCLVINIGDX------------------LERLTNNVLPSTVHRVV---- 251 Query: 302 TIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYP-PICAGEFVEQE 360 R + R S+ F H ASD +K L + + +YP I A EF++Q Sbjct: 252 ------NPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR 305 Query: 361 LAVINL 366 L I L Sbjct: 306 LREIKL 311

PyMOL of 3oox

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		373
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	5e-18
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	2e-16
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	8e-05

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312	Back alignment and structure

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 75/373 (20%), Positives = 116/373 (31%), Gaps = 73/373 (19%)

Query: 1   MEVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMME 60
             +  +  + Y          + +   +E+       G  ++ D        D  +D  +
Sbjct: 5   SAIDPVSFSLYAK--------DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAK 56

Query: 61  KYFESPFHFKRLQERPNLHYQVGVTPEGVEI--PRSLVDEEMQEKFRAMPKESQPSIPIG 118
            +F  P   K+           G  P GVE        D           KE        
Sbjct: 57  AFFALPVETKKQYAGVK-GGARGYIPFGVETAKGADHYDL----------KEF------- 98

Query: 119 PDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAI 178
               W     + P          N   V P   P +K  +    + +      V E  A 
Sbjct: 99  ----WHMGRDLPPGHRFRAHMADN---VWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIAT 151

Query: 179 GFGLPKDAFTSLMKQGPHLLAPTGCDLRRY----GKEGTVFAGYHYDLNFLTIHGRSRFP 234
              L +D F   ++ G  +L      L  Y         V AG H D+N +T+   +   
Sbjct: 152 YLKLERDFFKPTVQDGNSVLR-----LLHYPPIPKDATGVRAGAHGDINTITLLLGAEEG 206

Query: 235 GLNIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMH 294
           GL +  R+G+ + +  P GCL+I  G              D    ++E LT     + +H
Sbjct: 207 GLEVLDRDGQWLPINPPPGCLVINIG--------------D----MLERLTNNVLPSTVH 248

Query: 295 EVIVTSRTIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPL-GHFAESPLSRKYPPICA 353
            V+                    R S+  F H ASD  +K L          R    I A
Sbjct: 249 RVVNPPP--------ERRGVP--RYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITA 298

Query: 354 GEFVEQELAVINL 366
            EF++Q L  I L
Sbjct: 299 DEFLQQRLREIKL 311

PyMOL of 3oox

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		373
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	100.0
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	100.0
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	100.0
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	100.0
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	100.0
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	100.0
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	92.35
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	85.9

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}	Back alignment and structure

Probab=100.00  E-value=9.7e-74  Score=553.88  Aligned_cols=305  Identities=25%  Similarity=0.356  Sum_probs=263.9

Q ss_pred             CCcEEecCccccCCCCCCchhHHHHHHHHHHHhhhccEEEEEcCCCChHHHHHHHHHHHHhhCCCHhhhhhhccCCCCCc
Q 017340            2 EVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPNLHYQ   81 (373)
Q Consensus         2 ~iPvIDl~~l~~~~~~~~~~~r~~~~~~l~~A~~~~Gff~l~nhGi~~~~~~~~~~~a~~fF~lP~e~K~~~~~~~~~~~   81 (373)
                      +||||||+.+.+        ++.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... ...+
T Consensus         6 ~iPvIDls~~~~--------~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~-~~~~   76 (312)
T 3oox_A            6 AIDPVSFSLYAK--------DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV-KGGA   76 (312)
T ss_dssp             SSCCEETHHHHH--------CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS-GGGT
T ss_pred             CCCeEEChHhcc--------cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC-CCCc
Confidence            599999998753        3578999999999999999999999999999999999999999999999999875 3457


Q ss_pred             eecccCCcccCcCcchhHHHHHHhcCCCCCCCCCCCCCCCccccceecCCC-CCCcccccCCCCCCCCCCChhhHHHHHH
Q 017340           82 VGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPR-PSNTRFQELNSEPVIPDGFPEWKETMDS  160 (373)
Q Consensus        82 ~GY~~~g~e~~~~~~d~~~~e~~~~~~~~~~~~~~~~~D~k~~~~~~~~~~-p~~~~~~~~~~~n~wP~~~p~fr~~~~~  160 (373)
                      +||++.+.|...+.                     ..+|.|  |+|.++.+ +.+..+.....+|.||+.+|+||+.+++
T Consensus        77 ~Gy~~~g~e~~~~~---------------------~~~D~k--E~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~  133 (312)
T 3oox_A           77 RGYIPFGVETAKGA---------------------DHYDLK--EFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSW  133 (312)
T ss_dssp             SEEECCCCCCSTTS---------------------CSCCCC--EEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHH
T ss_pred             cccccccceecCCC---------------------CCCCce--eeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHH
Confidence            99999888764321                     235755  67777654 3223333456789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCChhHHhhhhcCCCcccccCCCCCcCCCCCCceeeeccCCCCcEEEEecCCCCceeEEe
Q 017340          161 WGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWL  240 (373)
Q Consensus       161 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrp~~~~~~~~~~~~~~~~~~HtD~g~lTlL~qd~~~GLqV~~  240 (373)
                      |+++|.+++.+|+++|+++||+++++|.+.+..+.+.||..+|++...+++. +|+++|||+|+||||+||+++||||++
T Consensus       134 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~~Ypp~~~~~~~-~g~~~HtD~g~lTlL~qd~v~GLqV~~  212 (312)
T 3oox_A          134 LYNSLDGMGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATG-VRAGAHGDINTITLLLGAEEGGLEVLD  212 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHTTCCCEEEEEEECCCSSCCC---CEEEECCCSSEEEEECCTTSCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCcceeeeEecCCCCCCcCC-cCccceecCceEEEEeEcCcCceEEEC
Confidence            9999999999999999999999999999999888888998888755433334 999999999999999999999999999


Q ss_pred             cCCcEEEeecCCCeEEEEeCCCCchhHHHHHHhhccccchhhhhcCCceecccceeeccCcchhhhhhhhccCCCCceeE
Q 017340          241 RNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSLWRVS  320 (373)
Q Consensus       241 ~~G~W~~V~~~~g~lvVniGd~~~~~~~~~~~~~~~~~~~l~~~TnG~~~st~HRV~~~~~~~~~~~~~~~~~~~~~R~S  320 (373)
                      ++|+|++|+|+||++||||||+                  ||+||||+||||+|||++++..          ....+|||
T Consensus       213 ~~g~W~~V~p~pg~~vVNiGD~------------------l~~~TnG~~kS~~HRVv~~~~~----------~~~~~R~S  264 (312)
T 3oox_A          213 RDGQWLPINPPPGCLVINIGDM------------------LERLTNNVLPSTVHRVVNPPPE----------RRGVPRYS  264 (312)
T ss_dssp             TTSCEEECCCCSSCEEEEECHH------------------HHHHTTTSSCCCCEEECCCCGG----------GTTSCEEE
T ss_pred             CCCcEEECCCCCCeEEEEhHHH------------------HHHHhCCeecCCCceEeCCCcc----------CCCCCEEE
Confidence            9999999999999999999999                  9999999999999999876532          12237999


Q ss_pred             EEEeeecCCCceeecCCcccCCCCCCCCC-CccHHHHHHHHHHHHhhc
Q 017340          321 STLFAHIASDAVLKPLGHFAESPLSRKYP-PICAGEFVEQELAVINLK  367 (373)
Q Consensus       321 i~~F~~p~~d~~i~pl~~~~~~~~~~~y~-~it~~e~~~~~~~~~~~~  367 (373)
                      |+||++|+.|++|.|+++|+++++|++|+ ++|++||+.+|+++++++
T Consensus       265 ia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~~l~  312 (312)
T 3oox_A          265 TPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIKLA  312 (312)
T ss_dssp             CCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHHC--
T ss_pred             EEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999 999999999999998763

PyMOL of 3oox

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		373
d1gp6a_		349	b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr	2e-16
d1w9ya1		307	b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla	5e-15
d1dcsa_		311	b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S	5e-14
d1odma_		329	b.82.2.1 (A:) Isopenicillin N synthase {Emericella	2e-10

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 56/363 (15%), Positives = 102/363 (28%), Gaps = 69/363 (19%)

Query: 2   EVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEK 61
           +VP IDL    S  E            E+     + G + + +     +  +R     E+
Sbjct: 45  QVPTIDLKNIESDDE----KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEE 100

Query: 62  YFESPFHFKRLQERPNLHYQVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDP 121
           +F      K          ++                               +   G   
Sbjct: 101 FFSLSVEEKEKYANDQATGKIQ-----------------------GYGSKLANNASGQLE 137

Query: 122 KWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFG 181
              Y + +               P       ++ E    +   +      V +  ++G G
Sbjct: 138 WEDYFFHLAYPEEKRDLSIWPKTP------SDYIEATSEYAKCLRLLATKVFKALSVGLG 191

Query: 182 LPKDAFTSLMKQGPHLLAPTGCDLRRYGKE--GTVFAGYHYDLNFLTIHGRSRFPGLNIW 239
           L  D     +     LL     +      +    +    H D++ LT    +  PGL ++
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 251

Query: 240 LRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVT 299
              GK V  K     +++  G                    +E L+ G   + +H  +V 
Sbjct: 252 -YEGKWVTAKCVPDSIVMHIG------------------DTLEILSNGKYKSILHRGLV- 291

Query: 300 SRTIDAIKQASEHNRSLWRVSSTLFAHIASDA-VLKPLGHFAESPLSRKYPPICAGEFVE 358
                        N+   R+S  +F     D  VLKPL          K+PP    + +E
Sbjct: 292 -------------NKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338

Query: 359 QEL 361
            +L
Sbjct: 339 HKL 341

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		373
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	100.0
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	100.0
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	100.0
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	100.0
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	87.04

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-66  Score=506.21  Aligned_cols=293  Identities=18%  Similarity=0.227  Sum_probs=246.2

Q ss_pred             CCcEEecCccccCCCCCCchhHHHHHHHHHHHhhhccEEEEEcCCCChHHHHHHHHHHHHhhCCCHhhhhhhccCC-CCC
Q 017340            2 EVPVIDLAAYLSAGEGEVGSEVSELCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERPN-LHY   80 (373)
Q Consensus         2 ~iPvIDl~~l~~~~~~~~~~~r~~~~~~l~~A~~~~Gff~l~nhGi~~~~~~~~~~~a~~fF~lP~e~K~~~~~~~-~~~   80 (373)
                      +||||||+.+.+++    ++.|+.++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.... .++
T Consensus        45 ~IPvIDls~l~~~d----~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~  120 (349)
T d1gp6a_          45 QVPTIDLKNIESDD----EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK  120 (349)
T ss_dssp             CCCEEECTTTTCSC----HHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTB
T ss_pred             CcCeEEChhcCCCC----HHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCC
Confidence            69999999998777    6788999999999999999999999999999999999999999999999999998643 223


Q ss_pred             ceecccCCcccCcCcchhHHHHHHhcCCCCCCCCCCCCCCCccccc-eecCCCCCCcccccCCCCCCCCCCChhhHHHHH
Q 017340           81 QVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYM-WRVGPRPSNTRFQELNSEPVIPDGFPEWKETMD  159 (373)
Q Consensus        81 ~~GY~~~g~e~~~~~~d~~~~e~~~~~~~~~~~~~~~~~D~k~~~~-~~~~~~p~~~~~~~~~~~n~wP~~~p~fr~~~~  159 (373)
                      ..||.....+...                         .+.++.+. +.... +     .....+|.||+..|.|++.++
T Consensus       121 ~~~~g~~~~~~~~-------------------------~~~~~~~~~~~~~~-~-----~~~~~~n~wp~~~~~f~e~~~  169 (349)
T d1gp6a_         121 IQGYGSKLANNAS-------------------------GQLEWEDYFFHLAY-P-----EEKRDLSIWPKTPSDYIEATS  169 (349)
T ss_dssp             CSEEECCCCCSTT-------------------------CCCCSCEEEEEEEE-S-----GGGCCGGGSCCSSTTHHHHHH
T ss_pred             ccccccccccccc-------------------------cccchhhhhccccc-c-----cccccccccccccchHHHHHH
Confidence            3455433222211                         12222222 22111 1     123567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChhHHhhhhcC---CCcccccCCCCCcCCCCCCceeeeccCCCCcEEEEecCCCCce
Q 017340          160 SWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQ---GPHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGL  236 (373)
Q Consensus       160 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~~~lrp~~~~~~~~~~~~~~~~~~HtD~g~lTlL~qd~~~GL  236 (373)
                      +|++.|.+++.+|+++++++||+++++|.+.+..   ..+.||..+|+... .+...+|+++|||+|+||||+|+.++||
T Consensus       170 ~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~-~~~~~~g~~~HtD~g~lTlL~q~~~~GL  248 (349)
T d1gp6a_         170 EYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCP-QPELALGVEAHTDVSALTFILHNMVPGL  248 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCS-STTTCCSEEEECCCSSEEEEEECSCCCE
T ss_pred             HHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeeccccccc-chhhccccccCCCCcceEEEeccCCcce
Confidence            9999999999999999999999999999887643   34567777776433 2456789999999999999999999999


Q ss_pred             eEEecCCcEEEeecCCCeEEEEeCCCCchhHHHHHHhhccccchhhhhcCCceecccceeeccCcchhhhhhhhccCCCC
Q 017340          237 NIWLRNGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSRTIDAIKQASEHNRSL  316 (373)
Q Consensus       237 qV~~~~G~W~~V~~~~g~lvVniGd~~~~~~~~~~~~~~~~~~~l~~~TnG~~~st~HRV~~~~~~~~~~~~~~~~~~~~  316 (373)
                      ||+ ++|+|++|+|.+|++|||+||+                  ||+||||+|+||+|||+.++..              
T Consensus       249 qv~-~~g~W~~V~p~~~a~vVNvGD~------------------l~~~TnG~~~St~HRVv~~~~~--------------  295 (349)
T d1gp6a_         249 QLF-YEGKWVTAKCVPDSIVMHIGDT------------------LEILSNGKYKSILHRGLVNKEK--------------  295 (349)
T ss_dssp             EEE-ETTEEEECCCCTTCEEEEECHH------------------HHHHTTTSSCCCCEEECCCSSC--------------
T ss_pred             eee-cCCceEEccCCCCCeeeeHHhH------------------HHHHhCCCccCcCccccCCCCC--------------
Confidence            996 6899999999999999999999                  9999999999999999987653              


Q ss_pred             ceeEEEEeeecCCCcee-ecCCcccCCCCCCCCCCccHHHHHHHHHHH
Q 017340          317 WRVSSTLFAHIASDAVL-KPLGHFAESPLSRKYPPICAGEFVEQELAV  363 (373)
Q Consensus       317 ~R~Si~~F~~p~~d~~i-~pl~~~~~~~~~~~y~~it~~e~~~~~~~~  363 (373)
                      +||||+||++|+.|++| .|+++|+++++|++|++||++||++.|+..
T Consensus       296 ~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         296 VRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHHhc
Confidence            89999999999999865 899999999999999999999999999843

PyMOL of d1gp6a_

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure