Citrus Sinensis ID: 017391

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
MDIVCNNISFQLPHKLSITRTPFTFTTTKSRTGPYCSLQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG
cccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHcHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHccccEEEEcccHHHHHccHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHcccccccccccEEEEEcccccccccccccccccccccEEEEccEEEEEcccccccccccccccc
ccEEEccEEEEccccEEEEcccccEEEEEccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEEEHHHccccEcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEHHHHHccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHccccccEEEEEEEEEcEHHHcEcccHHHHcEEEEEcEEEEEEcEcccccEcccccccHH
mdivcnnisfqlphklsitrtpftftttksrtgpycslqkystsspimrkplinsllpktdhdhreywklnpgkfgrfggkfvpETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYrnekgegpeiylkredlnhvgaHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYyltgtvvgphpcpiMVREFQSIIGKETRKQAMekwggkpdVLLACVGsgsnalglfhefindedvRLIGVEAagfgldsgkhaatlakgevGVYHGAMSYllqdeegqilgthsvgvg
MDIVCNnisfqlphklsitrtpftftttksrtgpycslqkystsspimrkPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLlqdeegqilGTHSVGVG
MDIVCNNISFQLPHKLSItrtpftftttksrtGPYCSLQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVataaacaklaldctVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG
**IVCNNISFQLPHKLSITRTPFTFTTTKSRTGPYCSLQKYS****IMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQI*********
*******ISFQLPHKLSITRTPFTFTTTKS******************************************GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVG**
MDIVCNNISFQLPHKLSITRTPFTFTTTKSRTGPYCSLQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG
MDIVCNNISFQLPHKLSITRTPFTFTTTKSRTG*******************************REYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILG*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDIVCNNISFQLPHKLSITRTPFTFTTTKSRTGPYCSLQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query372 2.2.26 [Sep-21-2011]
P25269475 Tryptophan synthase beta no no 0.806 0.631 0.666 1e-123
P14671470 Tryptophan synthase beta no no 0.806 0.638 0.666 1e-123
O50046466 Tryptophan synthase beta N/A no 0.959 0.766 0.572 1e-123
P43284443 Tryptophan synthase beta N/A no 0.806 0.677 0.630 1e-118
P43283389 Tryptophan synthase beta N/A no 0.798 0.763 0.643 1e-117
Q8DG49410 Tryptophan synthase beta yes no 0.803 0.729 0.636 1e-114
Q3MBV3413 Tryptophan synthase beta yes no 0.806 0.726 0.620 1e-114
Q8YQM6413 Tryptophan synthase beta yes no 0.806 0.726 0.617 1e-114
Q118P8409 Tryptophan synthase beta yes no 0.806 0.733 0.623 1e-113
Q8YZP7409 Tryptophan synthase beta no no 0.806 0.733 0.607 1e-111
>sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2 Back     alignment and function desciption
 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/303 (66%), Positives = 248/303 (81%), Gaps = 3/303 (0%)

Query: 73  GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLT 132
           G+FG+FGGK+VPETL+  LS LE  F  +  D  FQ EL+  L+DYVGRE+PLYFAERLT
Sbjct: 84  GRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLT 143

Query: 133 DHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATA 192
           +HYR E GEGP IYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGVATA
Sbjct: 144 EHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATA 203

Query: 193 AACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNWVGN 249
             CA+  L C ++MG  DME+Q+  V  M+LLGA+V+ V       K+A+SEAIR+WV N
Sbjct: 204 TVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTN 263

Query: 250 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309
           +E ++Y+ G+V GPHP P+MVR+F ++IGKETRKQAMEKWGGKPDVL+ACVG GSNA+GL
Sbjct: 264 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGL 323

Query: 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV 369
           FHEF++D +VR+IGVEAAGFGLDSGKHAATL KG+VGV HGAMSYLLQD++GQI+  HS+
Sbjct: 324 FHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSI 383

Query: 370 GVG 372
             G
Sbjct: 384 SAG 386
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0
>sp|P14671|TRPB1_ARATH Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1 Back     alignment and function description
>sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1 Back     alignment and function description
>sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|Q8DG49|TRPB_THEEB Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q3MBV3|TRPB_ANAVT Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YQM6|TRPB2_NOSS1 Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 Back     alignment and function description
>sp|Q118P8|TRPB_TRIEI Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YZP7|TRPB1_NOSS1 Tryptophan synthase beta chain 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
255554963463 tryptophan synthase beta chain, putative 0.983 0.790 0.720 1e-153
225444361 477 PREDICTED: tryptophan synthase beta chai 0.806 0.628 0.85 1e-150
302144077407 unnamed protein product [Vitis vinifera] 0.806 0.737 0.85 1e-149
118489500461 unknown [Populus trichocarpa x Populus d 0.970 0.783 0.700 1e-145
449488466 1563 PREDICTED: tryptophan synthase beta chai 0.782 0.186 0.831 1e-144
224116082393 predicted protein [Populus trichocarpa] 0.809 0.765 0.813 1e-144
449454865455 PREDICTED: tryptophan synthase beta chai 0.779 0.637 0.831 1e-143
42573495465 tryptophan synthase beta chain [Arabidop 0.860 0.688 0.736 1e-136
26452400465 unknown protein [Arabidopsis thaliana] g 0.860 0.688 0.736 1e-136
297843992465 hypothetical protein ARALYDRAFT_471294 [ 0.865 0.692 0.716 1e-134
>gi|255554963|ref|XP_002518519.1| tryptophan synthase beta chain, putative [Ricinus communis] gi|223542364|gb|EEF43906.1| tryptophan synthase beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/379 (72%), Positives = 309/379 (81%), Gaps = 13/379 (3%)

Query: 1   MDIVCNNISFQLPHKLSITRTPFTFTTTKSRTG-------PYCSLQKYSTSSPIMRKPLI 53
           MDI C+  +     KL   R+   +   + RT           + +  ++S   + KP I
Sbjct: 1   MDISCSIQTSFFNGKLQNLRSAVRYVAAQRRTANIRVVCAKTLTSENPNSSKLDVVKPKI 60

Query: 54  NSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELST 113
             L+P            +PGKFGRFGGKFVPETLITCL  LEA FN VL+D +FQEEL+T
Sbjct: 61  KILVPNN------LPLPSPGKFGRFGGKFVPETLITCLRDLEAVFNSVLKDPEFQEELAT 114

Query: 114 ALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRM 173
           ALRDYVGRETPLY+AERLT+HY+NEKGEGPEIYLKREDLNH GAHK+NNAI QAMIAKRM
Sbjct: 115 ALRDYVGRETPLYYAERLTNHYKNEKGEGPEIYLKREDLNHTGAHKLNNAIAQAMIAKRM 174

Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
           G +++VAATGAGQHGVATAAACAKL+L CTVFMGT+DME+QSS VLLMKLLGA+VKAV G
Sbjct: 175 GMETVVAATGAGQHGVATAAACAKLSLQCTVFMGTSDMERQSSNVLLMKLLGAEVKAVAG 234

Query: 234 CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKP 293
            FK+ASSEAIR WVGNL+ SYYL GTVVGPHP P MVREFQS+IGKETR+QAMEKWGGKP
Sbjct: 235 NFKDASSEAIREWVGNLQTSYYLAGTVVGPHPSPSMVREFQSVIGKETRRQAMEKWGGKP 294

Query: 294 DVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMS 353
           DVL+ACVGSGSNALGLF+EFI DEDVRLIGVEAAGFGL+SGKHAATLAKGEVGVYHGAMS
Sbjct: 295 DVLVACVGSGSNALGLFNEFIGDEDVRLIGVEAAGFGLNSGKHAATLAKGEVGVYHGAMS 354

Query: 354 YLLQDEEGQILGTHSVGVG 372
           YLLQDEEGQI+G +S+GVG
Sbjct: 355 YLLQDEEGQIIGPYSIGVG 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444361|ref|XP_002264829.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144077|emb|CBI23182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489500|gb|ABK96552.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|449488466|ref|XP_004158047.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224116082|ref|XP_002317204.1| predicted protein [Populus trichocarpa] gi|222860269|gb|EEE97816.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454865|ref|XP_004145174.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] gi|449473775|ref|XP_004153979.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42573495|ref|NP_974844.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|332006400|gb|AED93783.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452400|dbj|BAC43285.1| unknown protein [Arabidopsis thaliana] gi|28951055|gb|AAO63451.1| At5g28237 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843992|ref|XP_002889877.1| hypothetical protein ARALYDRAFT_471294 [Arabidopsis lyrata subsp. lyrata] gi|297335719|gb|EFH66136.1| hypothetical protein ARALYDRAFT_471294 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
TAIR|locus:1006230667465 AT5G28237 "AT5G28237" [Arabido 0.857 0.686 0.700 1.1e-117
TAIR|locus:2160190470 TSB1 "tryptophan synthase beta 0.806 0.638 0.643 7.2e-107
TAIR|locus:2005543475 TSB2 "tryptophan synthase beta 0.900 0.705 0.591 9.2e-107
TIGR_CMR|DET_1487399 DET_1487 "tryptophan synthase, 0.795 0.741 0.519 3.9e-83
TIGR_CMR|CHY_1582402 CHY_1582 "tryptophan synthase, 0.787 0.728 0.529 1.4e-80
TIGR_CMR|BA_1253397 BA_1253 "tryptophan synthase, 0.793 0.743 0.518 2.2e-80
SGD|S000002994 707 TRP5 "Tryptophan synthase" [Sa 0.868 0.456 0.453 2.7e-75
ASPGD|ASPL0000007723723 trpB [Emericella nidulans (tax 0.793 0.408 0.483 4.5e-75
CGD|CAL0004378 702 TRP5 [Candida albicans (taxid: 0.806 0.427 0.491 9.3e-75
UNIPROTKB|Q59KP3 702 TRP5 "Likely tryptophan synthe 0.806 0.427 0.491 9.3e-75
TAIR|locus:1006230667 AT5G28237 "AT5G28237" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 229/327 (70%), Positives = 269/327 (82%)

Query:    51 PLINSLLPKTDHDHREYWKLNP-GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQE 109
             P ++S+  +TD   R++ + +  GKFGRFGGKFVPETL++ L  LE EFNFV  D +FQE
Sbjct:    49 PSLDSVPTRTDK--RQFLRGDGNGKFGRFGGKFVPETLMSRLIELEDEFNFVRCDHEFQE 106

Query:   110 ELSTALRDYVGRETPLYFAERLTDHYRNE----KGEGPEIYLKREDLNHVGAHKINNAIG 165
             EL+TALRDYVGRETPLYFAERLT+HY+N     +G GPEIYLKREDL+H G+HKINNA+ 
Sbjct:   107 ELTTALRDYVGRETPLYFAERLTEHYKNIVPTIEG-GPEIYLKREDLSHCGSHKINNALA 165

Query:   166 QAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLG 225
             QAMI++R+G   +VAATGAGQHGV              VFMG AD+EKQS  VL MKLLG
Sbjct:   166 QAMISRRLGCSRVVAATGAGQHGVATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLG 225

Query:   226 AQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQA 285
             AQV +V+G FK+ASSEAIRNWV NL  +YYL+GTVVGPHPCPI+VREFQS+IGKETR+QA
Sbjct:   226 AQVISVEGTFKDASSEAIRNWVENLYTTYYLSGTVVGPHPCPIIVREFQSVIGKETRRQA 285

Query:   286 MEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
              + WGGKPDVL+ACVGSGSNALGLFHEF+ DEDVRL+GVEAAG GLDSGKH+ATLA G+V
Sbjct:   286 KQLWGGKPDVLVACVGSGSNALGLFHEFVGDEDVRLVGVEAAGLGLDSGKHSATLAFGDV 345

Query:   346 GVYHGAMSYLLQDEEGQILGTHSVGVG 372
             GVYHG+MSYLLQD++GQIL  HSVGVG
Sbjct:   346 GVYHGSMSYLLQDDQGQILKPHSVGVG 372
GO:0000162 "tryptophan biosynthetic process" evidence=ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0004834 "tryptophan synthase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006568 "tryptophan metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
SGD|S000002994 TRP5 "Tryptophan synthase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007723 trpB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59KP3 TRP5 "Likely tryptophan synthetase alpha chain" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q63EC7TRPB_BACCZ4, ., 2, ., 1, ., 2, 00.54450.79300.7430yesno
Q8YQM6TRPB2_NOSS14, ., 2, ., 1, ., 2, 00.61710.80640.7263yesno
Q0I6V1TRPB_SYNS34, ., 2, ., 1, ., 2, 00.53890.86820.7727yesno
C1DH66TRPB_AZOVD4, ., 2, ., 1, ., 2, 00.54780.79300.7266yesno
B1J4B1TRPB_PSEPW4, ., 2, ., 1, ., 2, 00.55440.79300.7283yesno
A5N7P0TRPB_CLOK54, ., 2, ., 1, ., 2, 00.54420.79830.75yesno
Q3AW11TRPB_SYNS94, ., 2, ., 1, ., 2, 00.56760.80370.7153yesno
B1YLS4TRPB_EXIS24, ., 2, ., 1, ., 2, 00.54120.79300.7393yesno
A5GP60TRPB_SYNPW4, ., 2, ., 1, ., 2, 00.57750.80370.7187yesno
Q8DG49TRPB_THEEB4, ., 2, ., 1, ., 2, 00.63690.80370.7292yesno
A2BNV9TRPB_PROMS4, ., 2, ., 1, ., 2, 00.57420.80370.7222yesno
A9BD24TRPB_PROM44, ., 2, ., 1, ., 2, 00.55520.85750.7668yesno
Q7TUL2TRPB_PROMM4, ., 2, ., 1, ., 2, 00.55520.85750.7316yesno
B0K8T6TRPB_THEP34, ., 2, ., 1, ., 2, 00.55110.79300.7544yesno
Q46HK9TRPB_PROMT4, ., 2, ., 1, ., 2, 00.56100.80640.7194yesno
Q31D17TRPB_PROM94, ., 2, ., 1, ., 2, 00.56760.80370.7222yesno
Q7NGX9TRPB_GLOVI4, ., 2, ., 1, ., 2, 00.58410.79300.7125yesno
Q2JLD7TRPB_SYNJB4, ., 2, ., 1, ., 2, 00.59730.79300.6941yesno
Q3MBV3TRPB_ANAVT4, ., 2, ., 1, ., 2, 00.62040.80640.7263yesno
Q8R9M9TRPB_THETN4, ., 2, ., 1, ., 2, 00.56760.79300.7544yesno
Q4KKP4TRPB_PSEF54, ., 2, ., 1, ., 2, 00.54780.79300.7266yesno
Q8KF11TRPB_CHLTE4, ., 2, ., 1, ., 2, 00.55920.79030.735yesno
C1ELF0TRPB_BACC34, ., 2, ., 1, ., 2, 00.54450.79300.7430yesno
B7HH01TRPB_BACC44, ., 2, ., 1, ., 2, 00.54780.79300.7430yesno
Q7VE26TRPB_PROMA4, ., 2, ., 1, ., 2, 00.58550.80100.7163yesno
Q8ESU4TRPB_OCEIH4, ., 2, ., 1, ., 2, 00.55110.79300.7393yesno
Q3AGY2TRPB_SYNSC4, ., 2, ., 1, ., 2, 00.57420.80370.7153yesno
Q3KK59TRPB_PSEPF4, ., 2, ., 1, ., 2, 00.55110.79300.7195yesno
B9E151TRPB_CLOK14, ., 2, ., 1, ., 2, 00.54420.79830.75yesno
P07345TRPB_PSEAE4, ., 2, ., 1, ., 2, 00.55770.79300.7338yesno
A2BUE1TRPB_PROM54, ., 2, ., 1, ., 2, 00.55770.80370.7222yesno
A3PAN2TRPB_PROM04, ., 2, ., 1, ., 2, 00.57090.80370.7222yesno
B4RCL0TRPB_PHEZH4, ., 2, ., 1, ., 2, 00.52200.83060.7610yesno
A2BZZ2TRPB_PROM14, ., 2, ., 1, ., 2, 00.56430.80640.7194yesno
Q97EF5TRPB_CLOAB4, ., 2, ., 1, ., 2, 00.54780.79300.7487yesno
Q7TUH0TRPB_PROMP4, ., 2, ., 1, ., 2, 00.55770.80370.7222yesno
A8G2H0TRPB_PROM24, ., 2, ., 1, ., 2, 00.56760.80370.7222yesno
Q7TTS6TRPB_SYNPX4, ., 2, ., 1, ., 2, 00.57090.80370.7153yesno
A6TM76TRPB_ALKMQ4, ., 2, ., 1, ., 2, 00.55260.79560.74yesno
Q118P8TRPB_TRIEI4, ., 2, ., 1, ., 2, 00.62370.80640.7334yesno
B0K2T9TRPB_THEPX4, ., 2, ., 1, ., 2, 00.56100.79300.7544yesno
O66923TRPB1_AQUAE4, ., 2, ., 1, ., 2, 00.55440.79300.7430yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.200.914
3rd Layer4.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
PLN02618410 PLN02618, PLN02618, tryptophan synthase, beta chai 0.0
PRK04346397 PRK04346, PRK04346, tryptophan synthase subunit be 0.0
COG0133396 COG0133, TrpB, Tryptophan synthase beta chain [Ami 1e-175
PRK13028402 PRK13028, PRK13028, tryptophan synthase subunit be 1e-151
TIGR00263385 TIGR00263, trpB, tryptophan synthase, beta subunit 1e-149
cd06446365 cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr 1e-148
PRK13803610 PRK13803, PRK13803, bifunctional phosphoribosylant 1e-137
PRK13802 695 PRK13802, PRK13802, bifunctional indole-3-glycerol 1e-102
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 2e-49
PRK12391427 PRK12391, PRK12391, tryptophan synthase subunit be 6e-40
COG1350 432 COG1350, COG1350, Predicted alternative tryptophan 7e-38
TIGR01415419 TIGR01415, trpB_rel, pyridoxal-phosphate dependent 3e-35
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 3e-27
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 2e-17
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 7e-16
cd01563324 cd01563, Thr-synth_1, Threonine synthase is a pyri 2e-14
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 5e-12
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 6e-12
PRK08639 420 PRK08639, PRK08639, threonine dehydratase; Validat 1e-11
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 3e-11
TIGR02079 409 TIGR02079, THD1, threonine dehydratase 3e-11
PRK06815317 PRK06815, PRK06815, hypothetical protein; Provisio 2e-10
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 2e-10
COG0031300 COG0031, CysK, Cysteine synthase [Amino acid trans 4e-09
COG0498411 COG0498, ThrC, Threonine synthase [Amino acid tran 7e-08
TIGR01124 499 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b 7e-07
PRK09224 504 PRK09224, PRK09224, threonine dehydratase; Reviewe 8e-07
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 8e-07
cd06448316 cd06448, L-Ser-dehyd, Serine dehydratase is a pyri 9e-07
PRK08246310 PRK08246, PRK08246, threonine dehydratase; Provisi 1e-06
TIGR01127 380 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m 2e-06
PRK12483 521 PRK12483, PRK12483, threonine dehydratase; Reviewe 2e-06
PRK08198 404 PRK08198, PRK08198, threonine dehydratase; Provisi 6e-06
PLN02550 591 PLN02550, PLN02550, threonine dehydratase 9e-06
PRK07476322 PRK07476, eutB, threonine dehydratase; Provisional 1e-05
PRK08526 403 PRK08526, PRK08526, threonine dehydratase; Provisi 1e-05
PRK06381319 PRK06381, PRK06381, threonine synthase; Validated 2e-05
PRK08638333 PRK08638, PRK08638, threonine dehydratase; Validat 3e-04
PRK06608338 PRK06608, PRK06608, threonine dehydratase; Provisi 0.002
PRK05638 442 PRK05638, PRK05638, threonine synthase; Validated 0.002
TIGR02991317 TIGR02991, ectoine_eutB, ectoine utilization prote 0.003
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain Back     alignment and domain information 
 Score =  595 bits (1537), Expect = 0.0
 Identities = 213/304 (70%), Positives = 255/304 (83%), Gaps = 3/304 (0%)

Query: 72  PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERL 131
            G+FG+FGGK+VPETL+T LS LEA FN +  D +FQEEL+  L+DYVGRETPLYFAERL
Sbjct: 16  FGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERL 75

Query: 132 TDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVAT 191
           T+HY+   GEGPEIYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGVAT
Sbjct: 76  TEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVAT 135

Query: 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNWVG 248
           A  CA+  L+C V+MG  DME+Q+  V  M+LLGA+V+ V       K+A+SEAIR+WV 
Sbjct: 136 ATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVT 195

Query: 249 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALG 308
           N+E ++Y+ G+V GPHP P+MVR+F S+IGKETR+QAMEKWGGKPDVL+ACVG GSNA+G
Sbjct: 196 NVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMG 255

Query: 309 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
           LFHEFI+DEDVRLIGVEAAGFGLDSGKHAATL KGEVGV HGAMSYLLQDE+GQI+  HS
Sbjct: 256 LFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHS 315

Query: 369 VGVG 372
           +  G
Sbjct: 316 ISAG 319

Length = 410
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit Back     alignment and domain information
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase Back     alignment and domain information
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form Back     alignment and domain information
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase Back     alignment and domain information
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 372
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
KOG1395 477 consensus Tryptophan synthase beta chain [Amino ac 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
PRK09225 462 threonine synthase; Validated 100.0
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PLN02565322 cysteine synthase 100.0
PRK08638333 threonine dehydratase; Validated 100.0
COG0498411 ThrC Threonine synthase [Amino acid transport and 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
PLN02970328 serine racemase 100.0
PLN03013429 cysteine synthase 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
PLN02550 591 threonine dehydratase 100.0
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
PRK06110322 hypothetical protein; Provisional 100.0
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
TIGR02079 409 THD1 threonine dehydratase. This model represents 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PLN02356423 phosphateglycerate kinase 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
PLN00011323 cysteine synthase 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PRK06381319 threonine synthase; Validated 100.0
PRK07334 403 threonine dehydratase; Provisional 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
PRK06815317 hypothetical protein; Provisional 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PRK08197394 threonine synthase; Validated 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK06260397 threonine synthase; Validated 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PLN02569 484 threonine synthase 100.0
PRK06450338 threonine synthase; Validated 100.0
PRK05638 442 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
PRK08329347 threonine synthase; Validated 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 99.98
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.98
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.97
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.97
KOG1481391 consensus Cysteine synthase [Amino acid transport 99.96
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.88
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.59
PF1482179 Thr_synth_N: Threonine synthase N terminus; PDB: 3 99.21
PF05368233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 88.13
COG1751186 Uncharacterized conserved protein [Function unknow 81.9
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 81.73
PF00106167 adh_short: short chain dehydrogenase alcohol dehyd 81.66
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-76  Score=557.37  Aligned_cols=299  Identities=58%  Similarity=1.000  Sum_probs=292.5

Q ss_pred             CCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEE
Q 017391           68 WKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYL  147 (372)
Q Consensus        68 ~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~Iyl  147 (372)
                      .||.+|+||.|||+||||+|++++.+|+.+|.+...|++|++||...+++|+||||||+..++|++.+      +.+||+
T Consensus         2 ~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiyL   75 (396)
T COG0133           2 YPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIYL   75 (396)
T ss_pred             CCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEEE
Confidence            36889999999999999999999999999999999999999999999999999999999999999998      699999


Q ss_pred             eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391          148 KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ  227 (372)
Q Consensus       148 K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~  227 (372)
                      ||||+|+||+||.++++.++++|+++||+++|+++++|+||+|.|.+|+++|++|+|||...++.+++.|+.+|+.+||+
T Consensus        76 KREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~  155 (396)
T COG0133          76 KREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE  155 (396)
T ss_pred             ehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391          228 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS  304 (372)
Q Consensus       228 Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG  304 (372)
                      |+.|..   ++.||+++|+|+|+.+....+|+++++.+|||||.+|+++|+++|.|+.+|+.++.|+.||+||.|||+|+
T Consensus       156 V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGS  235 (396)
T COG0133         156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGS  235 (396)
T ss_pred             EEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCc
Confidence            999965   89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391          305 NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG  372 (372)
Q Consensus       305 ~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~  372 (372)
                      |+.|++..|..++.|++||||+.|.++.++.|+++|+.|.+||+||+++|+|||++|||.++||||||
T Consensus       236 NAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAG  303 (396)
T COG0133         236 NAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAG  303 (396)
T ss_pred             chhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccC
Confidence            99999999998899999999999999999999999999999999999999999999999999999998

>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>COG1751 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
1v8z_A388 X-Ray Crystal Structure Of The Tryptophan Synthase 3e-87
1wdw_B385 Structural Basis Of Mutual Activation Of The Trypto 3e-87
1x1q_A418 Crystal Structure Of Tryptophan Synthase Beta Chain 4e-79
2o2e_A422 Mycobacterium Tuberculosis Tryptophan Synthase Beta 2e-76
2dh5_A397 Crystal Structure Of E. Coli Holo-Trpb Length = 397 1e-73
1k8x_B397 Crystal Structure Of Alphat183v Mutant Of Tryptopha 1e-73
1kfe_B394 Crystal Structure Of Alphat183v Mutant Of Tryptopha 1e-73
1qop_B396 Crystal Structure Of Wild-type Tryptophan Synthase 1e-73
1k7x_B396 Crystal Structure Of The Beta-Ser178pro Mutant Of T 2e-73
1ttp_B397 Tryptophan Synthase (E.C.4.2.1.20) In The Presence 2e-73
3pr2_B391 Tryptophan Synthase Indoline Quinonoid Structure Wi 2e-73
1a50_B396 Crystal Structure Of Wild-Type Tryptophan Synthase 2e-73
1a5a_B397 Cryo-Crystallography Of A True Substrate, Indole-3- 2e-73
2j9y_B397 Tryptophan Synthase Q114n Mutant In Complex With Co 6e-73
2tys_B397 Crystal Structures Of Mutant (Betak87t) Tryptophan 7e-73
1ubs_B397 Tryptophan Synthase (E.C.4.2.1.20) With A Mutation 7e-73
1qoq_B396 Crystal Structure Of Wild-type Tryptophan Synthase 1e-72
1fuy_B396 Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA 1e-72
2j9z_B397 Tryptophan Synthase T110 Mutant Complex Length = 39 3e-72
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/301 (52%), Positives = 208/301 (69%), Gaps = 8/301 (2%)
Query: 75  FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
           FG FGG++VPETLI  L  LE  +     D +F  +L+  L+ + GR TPLY+A+RLT  
Sbjct: 3   FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLT-- 60
Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXX 194
              EK  G +IYLKREDL H GAHK NNAIGQA++AK MG+  ++A TGAGQHGV     
Sbjct: 61  ---EKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 195 XXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGNLE 251
                    ++MG  D+E+Q   V  MKLLGA V  V+      K+A +EA+R+WV   E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFH 311
            ++YL G+VVGPHP P +VR+FQS+IG+E + Q +E  G  PDV++ACVG GSNA+G+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237
Query: 312 EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV 371
            F+ND+ V+L+GVEA G GL+SGKH+A+L  G+VGV+HG +SY LQDEEGQI  THS+  
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAP 297
Query: 372 G 372
           G
Sbjct: 298 G 298
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385 Back     alignment and structure
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418 Back     alignment and structure
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422 Back     alignment and structure
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397 Back     alignment and structure
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397 Back     alignment and structure
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394 Back     alignment and structure
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396 Back     alignment and structure
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397 Back     alignment and structure
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391 Back     alignment and structure
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397 Back     alignment and structure
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397 Back     alignment and structure
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397 Back     alignment and structure
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397 Back     alignment and structure
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396 Back     alignment and structure
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 0.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 1e-179
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 1e-179
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 1e-178
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 4e-42
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 4e-26
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 3e-20
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 1e-17
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 1e-17
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 2e-17
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 6e-16
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 1e-15
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 2e-15
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 3e-15
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 3e-15
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 1e-13
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 7e-13
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 2e-12
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 3e-11
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 7e-10
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 2e-09
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Back     alignment and structure
 Score =  511 bits (1319), Expect = 0.0
 Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)

Query: 72  PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERL 131
              FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +
Sbjct: 5   NPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNI 64

Query: 132 TDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVAT 191
           T            +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGVA+
Sbjct: 65  TAGT------RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVAS 118

Query: 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNWVG 248
           A A A L L C ++MG  D+E+QS  V  M+L+GA+V  V       K+A +EA+R+W G
Sbjct: 119 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSG 178

Query: 249 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALG 308
           + E ++Y+ GT  GPHP P +VREFQ +IG+ET+ Q ++K G  PD ++ACVG GSNA+G
Sbjct: 179 SYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIG 238

Query: 309 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
           +F +FIND  V LIGVE  G G+++G+H A L  G VG+Y G  + ++Q  +GQI  ++S
Sbjct: 239 MFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYS 298

Query: 369 V-------GVG 372
           +        VG
Sbjct: 299 ISAGLDFPSVG 309
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418 Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 100.0
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 100.0
1vb3_A 428 Threonine synthase; PLP-dependent enzyme, lyase; H 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 93.56
1t57_A206 Conserved protein MTH1675; structural genomics, FM 86.72
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
Probab=100.00  E-value=9.1e-61  Score=482.94  Aligned_cols=299  Identities=50%  Similarity=0.901  Sum_probs=222.6

Q ss_pred             CCCCCCcCC---CCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCee
Q 017391           69 KLNPGKFGR---FGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEI  145 (372)
Q Consensus        69 ~d~~~~~g~---~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~I  145 (372)
                      ||..|+||+   |||+||||++++.+++|+.+|.....++.|+++++.++.++++++|||+++++|++.+     ++.+|
T Consensus        25 ~~~~~~~~~~~~~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~-----gg~~i   99 (422)
T 2o2e_A           25 PDSGGHFGGPSGWGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHA-----GSARI   99 (422)
T ss_dssp             ----------------CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGT-----TTCEE
T ss_pred             CCcCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhc-----CCCeE
Confidence            688899999   9999999999899999999999999999999999999999998899999999999987     46899


Q ss_pred             EEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcC
Q 017391          146 YLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLG  225 (372)
Q Consensus       146 ylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lG  225 (372)
                      |+|+|++|||||||+|+++++++.+++.|++.+|+++|+||||+|+|++|+++|++|+||||+.++++++.|+.+|+.+|
T Consensus       100 ~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~G  179 (422)
T 2o2e_A          100 FLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLG  179 (422)
T ss_dssp             EEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCC
Confidence            99999999999999999999999898889888888889999999999999999999999999875544568899999999


Q ss_pred             CEEEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCc
Q 017391          226 AQVKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGS  302 (372)
Q Consensus       226 A~Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~  302 (372)
                      |+|+.++.   +++||++++++.++++..+.+|++++++++|||+.++.++|+++|.|+.+|+.++.+..||+||+|+|+
T Consensus       180 A~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~  259 (422)
T 2o2e_A          180 AEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGG  259 (422)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCC
Confidence            99999974   899999988887877655678888999999999888778999999999999987767679999999999


Q ss_pred             hhHHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391          303 GSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG  372 (372)
Q Consensus       303 GG~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~  372 (372)
                      |||++|++.+++.++.+|||||||.++++.++.+++++..|..++++|.++|++||++||+.+.||||+|
T Consensus       260 GG~~~Gi~~~~~~~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~g  329 (422)
T 2o2e_A          260 GSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAG  329 (422)
T ss_dssp             HHHHHTTSGGGTTCTTCEEEEEEECC--------------------------------------------
T ss_pred             chhHHHHHHHHhcCCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecc
Confidence            9999999988887889999999999998777788999999999999999999999999999999999875
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 372
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 1e-80
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 6e-79
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-26
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 2e-25
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 5e-23
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-21
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 5e-21
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 6e-18
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 9e-18
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 7e-15
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 1e-13
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 2e-13
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 3e-13
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 4e-13
d1e5xa_ 477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 1e-12
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 5e-12
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 7e-12
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 7e-12
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 2e-11
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  249 bits (637), Expect = 1e-80
 Identities = 161/297 (54%), Positives = 212/297 (71%), Gaps = 8/297 (2%)

Query: 75  FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
           FG FGG++VPETLI  L  LE  +     D +F  +L+  L+ + GR TPLY+A+RLT+ 
Sbjct: 3   FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62

Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAA 194
                  G +IYLKREDL H GAHK NNAIGQA++AK MG+  ++A TGAGQHGVATA A
Sbjct: 63  I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117

Query: 195 CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNWVGNLE 251
            A L +   ++MG  D+E+Q   V  MKLLGA V  V+      K+A +EA+R+WV   E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177

Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFH 311
            ++YL G+VVGPHP P +VR+FQS+IG+E + Q +E  G  PDV++ACVG GSNA+G+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237

Query: 312 EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
            F+ND+ V+L+GVEA G GL+SGKH+A+L  G+VGV+HG +SY LQDEEGQI  THS
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHS 294
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1vb3a1 428 Threonine synthase {Escherichia coli [TaxId: 562]} 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1e5xa_ 477 Threonine synthase {Mouse-ear cress (Arabidopsis t 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.97
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.95
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.94
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.94
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 94.45
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 92.54
d1t57a_186 Hypothetical protein MTH1675 {Methanobacterium the 90.79
d1wjpa226 Zinc finger protein 295, ZNF295 {Human (Homo sapie 86.96
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 86.25
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 85.5
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 84.73
d1gega_255 meso-2,3-butanediol dehydrogenase {Klebsiella pneu 83.42
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 82.14
d1gtea4196 Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su 81.81
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 81.19
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.6e-60  Score=470.96  Aligned_cols=296  Identities=47%  Similarity=0.840  Sum_probs=279.8

Q ss_pred             CCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeec
Q 017391           71 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKRE  150 (372)
Q Consensus        71 ~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E  150 (372)
                      .+||||.|||.|+||+|++.|++|+..|.+.+.|++|++|++..++++++|||||+++++|++.+      +++||+|+|
T Consensus         4 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~l------g~~IylK~E   77 (390)
T d1qopb_           4 LNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGT------RTTLYLKRE   77 (390)
T ss_dssp             SCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTS------SEEEEEEEG
T ss_pred             CCCcccCcCCEeCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhh------CCEEEEEEe
Confidence            36899999999999999999999999999999999999999999999999999999999999987      789999999


Q ss_pred             CCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391          151 DLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA  230 (372)
Q Consensus       151 ~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~  230 (372)
                      ++|||||||||+++.++..|++.|++++|+++|+||||.|+|++|+++|++|+||||+.++.++..|+.+|+.|||+|+.
T Consensus        78 ~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~  157 (390)
T d1qopb_          78 DLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIP  157 (390)
T ss_dssp             GGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEE
T ss_pred             cCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999998776678899999999999999


Q ss_pred             EcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHH
Q 017391          231 VDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNAL  307 (372)
Q Consensus       231 v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~la  307 (372)
                      |..   +++++...+.+++.......+|..++.+++++++.+++++|.++|.|+.+|+.++.++.||+|++|+|+|++++
T Consensus       158 v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~  237 (390)
T d1qopb_         158 VHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAI  237 (390)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHH
T ss_pred             ecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhh
Confidence            964   67888888888888877778888899999999999999999999999999988878888999999999999999


Q ss_pred             hhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391          308 GLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG  372 (372)
Q Consensus       308 Gi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~  372 (372)
                      |++.+|+..+.+++++|+|.+.++.+..+++++..|..++.|+..+|+++|++|++.+.|||++|
T Consensus       238 G~~~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~g  302 (390)
T d1qopb_         238 GMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAG  302 (390)
T ss_dssp             HHHGGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGG
T ss_pred             heecccccccceeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccc
Confidence            99999998889999999999999999999999999999999999999999999999999999986
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure