Citrus Sinensis ID: 017401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MDSSTLFVTDAKNGGTGPKFTFYVFERSCCILVVLVLYPSPSPAPEREEEQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccEEEEEEEcEEEEEEEEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccEEcccccccccccccEEEEHHHHHHHHHHHHHEEEEcccccEEEEccccEEEEccccEEEEEEEEEEEcccccccEEEEEcccccccccccEEEEEEEEEccccccEEEEEEEcccEEEEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEccccccEEEEEEEccccEEEEEccccccccccccEEEEEEEccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccccEEEEEEEEcccEEEEEEEEcccccccccHcccccccccccccHcccccccccccccccccccccccccccccHccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEccccEEEEEEEEEEccccccccEEEEcccccccccEEccccEEEEEEccccccEEEEEEccccEEEEEEEEEcccccEEEEEEEcccccHHccccccccccEEEEEEEEcccEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEcccccccEEEEEEcccccEEEEEccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
MDSSTLFVtdaknggtgpkfTFYVFERSCCILVVLvlypspspapereeeqshnhnnfdhehhahrferpeldrqnvgvshegnftrsdaaswtnvsddtwPFIIVALTFWFFVSMTLILgvygpenltlgpkssillqpspffvQKVKVQEIyelkpgpklyafynsppldtvstwsekiivsvpadshQEWIIYLNKgsqinisysvkspgsSVFLIIAQGNeglrqwlfdptfpnttlswnviqgsgvihqhiftsssyyvglgnlnsEEVEVQLNLRLRAFLYNtsdayykctfadglcslsvlfpngnaivltspkteqdtsndnwqvrvsyePRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Flexible Loop (DISEMBL)
mdsstlfvtdaknggtgpKFTFYVFERSCCILVVLVLYPSPSPAPEREEEQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEgnftrsdaaswtnvsDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLtspkteqdtsndnWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Low Complexity Region (SEG)
MDSSTLFVTDAKNGGTGPKFTFYVFERSCCILVVLVLYpspspapereeeqsHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Disordered region (IsUnstruct)
************NGGTGPKFTFYVFERSCCILVVLVLY***************************************************AASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTS*********DNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLL*
Disordered Region (DISOPRED)
***STLF*TDAKNGGTGPKFTFYVFERSCCILVVLV********************************************HEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQE***LKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Disordered Region (DISEMBL)
MDSSTLFVTDAKNGGTGPKFTFYVFERSCCILVVLVLYPSPS***********NHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSP*********NWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Disordered Region (DISPRO)
**SSTLFVTDAKNGGTGPKFTFYVFERSCCILVVLVLYPS**************************FERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSTLFVTDAKNGGTGPKFTFYVFERSCCILVVLVLYPSPSPAPEREEEQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRFYHFLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
255574357	460	ubiquitin-protein ligase, putative [Rici	0.833	0.673	0.556	3e-98
225439436	479	PREDICTED: uncharacterized protein LOC10	0.806	0.626	0.534	8e-86
359478847	485	PREDICTED: uncharacterized protein LOC10	0.865	0.663	0.504	1e-85
356523314	440	PREDICTED: uncharacterized protein LOC10	0.760	0.643	0.541	7e-76
356566678	441	PREDICTED: uncharacterized protein LOC10	0.672	0.566	0.547	5e-69
224139100	356	predicted protein [Populus trichocarpa]	0.586	0.612	0.576	9e-69
224059288	395	predicted protein [Populus trichocarpa]	0.688	0.648	0.481	3e-68
297806063	444	protein binding protein [Arabidopsis lyr	0.846	0.709	0.422	4e-67
255569361	502	ubiquitin-protein ligase, putative [Rici	0.790	0.585	0.452	6e-67
42567564	444	RING/U-box domain-containing protein [Ar	0.830	0.695	0.427	2e-66

>gi|255574357|ref|XP_002528092.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223532481|gb|EEF34271.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 234/320 (73%), Gaps = 10/320 (3%)

Query: 47  REEEQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIV 106
           REEE+S       H  + H+F   + D  ++G    GN   SD  S   + DDTW  IIV
Sbjct: 26  REEEESI------HGDNQHQFREADTDHTHIGF-FRGNLFVSDDVS--AIRDDTWSCIIV 76

Query: 107 ALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFY 166
            LTFWFFVSMTLILGVYGP ++ +GP +S L++ +PFFVQ +KVQE+    PG  LY FY
Sbjct: 77  VLTFWFFVSMTLILGVYGPVSVMIGPNTSALIRTNPFFVQSIKVQELDSNHPGLMLYGFY 136

Query: 167 NSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEG 226
            +PPL+ V +WS+   ++VPADSH+EWI Y N+GSQINIS+SV SP +S+FL+IAQG+EG
Sbjct: 137 KTPPLNVVKSWSKSYSLTVPADSHKEWIYYFNEGSQINISFSVYSPSASLFLVIAQGSEG 196

Query: 227 LRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFL 286
           L QWL DPT+PN+T SWNVIQGSG+I Q I  SSSYYV +GNLNS EVEVQLNL + AFL
Sbjct: 197 LSQWLEDPTYPNSTSSWNVIQGSGIIQQKIRKSSSYYVAVGNLNSVEVEVQLNLSINAFL 256

Query: 287 YNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVV 346
           YNT++AYYKCTF +G+C L  LFPNGNA++L+SP  E+++ +  W +++SY PRW +YVV
Sbjct: 257 YNTTEAYYKCTFTNGMCRLRTLFPNGNAVILSSPGPEEESPSSEWYIKMSYGPRWATYVV 316

Query: 347 GICIFIPHFLLVAYHSIKRF 366
           GI + +   +LV ++ + +F
Sbjct: 317 GIAV-MTVLMLVVFNFLNKF 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439436|ref|XP_002264526.1| PREDICTED: uncharacterized protein LOC100247198 [Vitis vinifera] gi|296083155|emb|CBI22791.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 205/301 (68%), Gaps = 1/301 (0%)

Query: 59  DHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTL 118
           + E+   R   PEL RQ + V++ G+    D      + +DTW  IIV LTFWFFVSMTL
Sbjct: 47  EQENLMQRHHSPELQRQQISVTYRGDAGVDDEDGSATIRNDTWSCIIVVLTFWFFVSMTL 106

Query: 119 ILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWS 178
           ILGVYG  N+ LGP  SILL P+P FVQ +KV+E+ E  PGP LY FY  PPL+ ++TW 
Sbjct: 107 ILGVYGSVNMRLGPNCSILLHPNPLFVQYLKVEELDEPTPGPMLYGFYKVPPLEVITTWD 166

Query: 179 EKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLII-AQGNEGLRQWLFDPTFP 237
           +K+       SH+EW+ YLNKGSQ+NI+YSV S  SS  +++ AQGNEGL QWL DPT+P
Sbjct: 167 QKLKAYTAPYSHREWVYYLNKGSQVNITYSVSSLSSSSLILVIAQGNEGLSQWLEDPTYP 226

Query: 238 NTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCT 297
           N TLSW +I G+G + Q+I+TSSSYYV +GN N EEVEVQLNL ++A  YNT+ AY KC 
Sbjct: 227 NITLSWQLIHGNGTVQQNIYTSSSYYVAVGNTNLEEVEVQLNLTVKALQYNTTGAYSKCN 286

Query: 298 FADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLL 357
              G CSL + FP  NA V+TSP  EQ   +D W V++SY PRW++Y+VG+       LL
Sbjct: 287 LTQGQCSLKLFFPKANAAVITSPGPEQGIPSDEWYVKLSYGPRWMTYIVGVGGMTVLMLL 346

Query: 358 V 358
           V
Sbjct: 347 V 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478847|ref|XP_002279069.2| PREDICTED: uncharacterized protein LOC100258653 [Vitis vinifera] gi|297745897|emb|CBI15953.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 214/325 (65%), Gaps = 3/325 (0%)

Query: 43  PAPEREEEQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWP 102
           P  ER EE         ++H        E  RQ   VS+  N + SD A+   + DD W 
Sbjct: 36  PQGERLEEPQGEQLEDGNDHRQFYLPPQEQQRQPSSVSYRVNISISDVAT-GEIRDDVWS 94

Query: 103 FIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKL 162
            ++V +TFWFF SM LILG YG  N+ LGP  S L++ + FFVQ +KVQEI E KPGP L
Sbjct: 95  CLVVLVTFWFFASMALILGFYGSANVQLGPHCSRLVKANSFFVQTIKVQEIDEPKPGPML 154

Query: 163 YAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSS-VFLIIA 221
           Y FY  PPLD  +TW E    SV A+ H+EWI +LNKGS+++ISYSVK+P SS + L+IA
Sbjct: 155 YGFYEPPPLDVENTWFETHDASVEANFHKEWIFFLNKGSKVDISYSVKAPRSSPLSLVIA 214

Query: 222 QGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLR 281
           QG E L +W+ DP++PNTTLSWN+I GSG + Q IF SS YYV +GNLNSEEV+VQLNL 
Sbjct: 215 QGRESLVEWIEDPSYPNTTLSWNIIYGSGKVQQEIFKSSYYYVAVGNLNSEEVKVQLNLT 274

Query: 282 LRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRW 341
           ++ FLYNT+ AYYKC+  + LCSL +     NA VLTSP   Q +SND+W +++SY PRW
Sbjct: 275 MKTFLYNTTKAYYKCSLGNRLCSLKLFLLRANAAVLTSPGPRQGSSNDDWLIKMSYGPRW 334

Query: 342 LSYVVGICIFIPHFLLVAYHSIKRF 366
           ++Y VG    +   +L+A+ +   F
Sbjct: 335 ITYFVGSGA-MTVLILLAFRACNTF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523314|ref|XP_003530285.1| PREDICTED: uncharacterized protein LOC100777141 [Glycine max]

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/286 (54%), Positives = 199/286 (69%), Gaps = 3/286 (1%)

Query: 64  AHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVY 123
           A   E P    Q    S  G ++  D  S+  V D+T    +V  + WFFVSMT+ILGVY
Sbjct: 16  ARLEETPSGSSQTPLRSGRGGWSIVDG-SFAIVRDNTCSCFVVVFSLWFFVSMTMILGVY 74

Query: 124 GPENLTLGPKSSILLQPSPFFVQKVKVQEI-YELKPGPKLYAFYNSPPLDTVSTWSEKII 182
           G   + LGPKSSI+ QPSP FVQ VKV+ +     PGP LY  Y  PPLD V+TW E I 
Sbjct: 75  GSMTIVLGPKSSIVFQPSPVFVQSVKVENLKANPGPGPILYGTYRYPPLDVVTTWGESIN 134

Query: 183 VSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLS 242
           VS+P+ S++EW  YLN GS INISY V S  SSVFLIIA+G+  L +WL DPT PNTTLS
Sbjct: 135 VSLPSGSYKEWKYYLNCGSSINISYHVSSKSSSVFLIIAEGDVSLTRWLEDPTEPNTTLS 194

Query: 243 WNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGL 302
           WNVI G+G+I Q IF SSSYYV LGNL+ E+VEV LNL +RA L+NT++A+YKC  A+G 
Sbjct: 195 WNVIHGTGMITQDIFWSSSYYVALGNLD-EDVEVALNLSIRASLHNTTNAFYKCDLANGP 253

Query: 303 CSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGI 348
           CSL++LF +G+A VL +P  +Q+ +++ W V++SY PRW++Y+ GI
Sbjct: 254 CSLNLLFSDGSAAVLVTPGPQQENASNEWYVKLSYGPRWVTYIFGI 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566678|ref|XP_003551557.1| PREDICTED: uncharacterized protein LOC100791057 [Glycine max]

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/252 (54%), Positives = 182/252 (72%), Gaps = 2/252 (0%)

Query: 98  DDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEI-YEL 156
           DDT    +V  + WFFVSMT+ILGVYG   + LGPKSS + QPSP FVQ VKV+ +    
Sbjct: 50  DDTCSCFVVVFSLWFFVSMTMILGVYGSMTVVLGPKSSTVFQPSPVFVQSVKVENLKANP 109

Query: 157 KPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSV 216
            PGP LY  Y  PPLD V+TW E   VS+P+ S++EW  YLN GS +NIS+ V S  SSV
Sbjct: 110 GPGPILYGTYQYPPLDVVTTWGESCNVSLPSGSYKEWKYYLNSGSSVNISFHVSSRSSSV 169

Query: 217 FLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEV 276
           FL+I++G+  L +WL DPT PNTTLSWNVI G+G+I Q I  SSSYYV LGNL+ E+VEV
Sbjct: 170 FLVISKGDGSLTRWLEDPTEPNTTLSWNVIHGTGMITQDILWSSSYYVALGNLD-EDVEV 228

Query: 277 QLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVS 336
            LN  +RA L+NT++AYYKC   +G CSL+++F +G+A VL +P  +Q+ +++ W V++S
Sbjct: 229 ALNFSVRASLHNTTNAYYKCALTNGPCSLNLIFHDGSAAVLVTPGPQQENASNEWYVKLS 288

Query: 337 YEPRWLSYVVGI 348
           Y PRW++Y+ GI
Sbjct: 289 YGPRWMTYIFGI 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139100|ref|XP_002322980.1| predicted protein [Populus trichocarpa] gi|222867610|gb|EEF04741.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 167/222 (75%), Gaps = 4/222 (1%)

Query: 148 VKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQ---EWIIYLNKGSQIN 204
             V+++Y+  PG  LY  Y SPPLD V TW   +  SV  DSH+   +++ +LN+GSQIN
Sbjct: 12  CAVEQLYDTNPGLILYGLYTSPPLDVVETWDRTLNFSVSPDSHKASVDFMYFLNEGSQIN 71

Query: 205 ISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYV 264
           ISY V SP SSVFLIIAQG+E L QWL +PT PNTTLSWNVIQGSG + Q IFTS+SYYV
Sbjct: 72  ISYRVNSPISSVFLIIAQGSESLSQWLENPTRPNTTLSWNVIQGSGFVQQSIFTSASYYV 131

Query: 265 GLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQ 324
            +GNLNSEEVEVQL LR+R+F+YNT++AYYKCTF D  CSLS+LFPNGNA+VL S   E+
Sbjct: 132 AVGNLNSEEVEVQLTLRVRSFMYNTTEAYYKCTFTDSKCSLSILFPNGNAVVLNSLGPEE 191

Query: 325 DTSNDNWQVRVSYEPRWLSYVVGICIFIPHFLLVAYHSIKRF 366
            + ++ W V+VSY PRW +Y++GI + +   ++ A++ + +F
Sbjct: 192 GSYSEEWNVKVSYGPRWATYILGI-VGMTVIMMAAFNFLNKF 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059288|ref|XP_002299808.1| predicted protein [Populus trichocarpa] gi|222847066|gb|EEE84613.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/264 (48%), Positives = 181/264 (68%), Gaps = 8/264 (3%)

Query: 85  FTRSDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFF 144
            + S+AA+   + DD W  + V + FWFF S+T+ILG YG  +L LGP  S L+QP+P F
Sbjct: 1   ISMSNAAA-NQMRDDVWSCLAVLIAFWFFASLTIILGYYGSVSLELGPNCSRLVQPNPLF 59

Query: 145 VQKVKVQEIYELKPGPKLYAFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQIN 204
           VQ +K  E+ + KPGP LY FY  PPLD   TW+++       D+ QEW ++LNKGS+++
Sbjct: 60  VQSLKAGELGKPKPGPILYGFYKPPPLDVEITWTQQ------HDAVQEWALFLNKGSKVD 113

Query: 205 ISYSVKSPGSS-VFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYY 263
           ISYS+KS G++ + L+IAQG E L +W+ DP++PNTTLSWN+I GSG I Q I TSSSYY
Sbjct: 114 ISYSIKSLGATPLSLVIAQGTESLIEWIDDPSYPNTTLSWNIINGSGNIQQEIPTSSSYY 173

Query: 264 VGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTE 323
           + +GN NSEEV+V+L   +++ +Y+ S AYY C  ++ LCSL +        VLTSP   
Sbjct: 174 IAVGNFNSEEVKVELKFIVKSLIYDISQAYYSCPLSNHLCSLQLFLMGTTTAVLTSPGPA 233

Query: 324 QDTSNDNWQVRVSYEPRWLSYVVG 347
           +  S+++W V++SY PRW+ Y++G
Sbjct: 234 EGASDEDWYVKLSYGPRWIIYIIG 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806063|ref|XP_002870915.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316752|gb|EFH47174.1| protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/322 (42%), Positives = 204/322 (63%), Gaps = 7/322 (2%)

Query: 47  REEEQSHNHNNFDHEHHAHRFE---RPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPF 103
           REE     +N F+H  H   F+   RP  +R +    H G+   S+     + S+D W  
Sbjct: 18  REET---GYNRFEHHGHDSGFDHRDRPPWNRSDYDYRH-GSIVASENVRNNSTSEDPWSC 73

Query: 104 IIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLY 163
           ++V  TF  FVSMTLILG+YG  N+ LGP SS L++P+  FVQ V V+E+     G  LY
Sbjct: 74  VVVVATFCIFVSMTLILGLYGTTNVWLGPNSSFLIKPTSVFVQNVIVEELGNKGSGLILY 133

Query: 164 AFYNSPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQG 223
               +P LD ++ WSE   ++VP DS++ WI YLNKGS++ +SY+V+S GSS++L++AQG
Sbjct: 134 GLNQAPQLDVLTKWSEVHYLAVPNDSYKYWIQYLNKGSRVKVSYNVESVGSSLYLVVAQG 193

Query: 224 NEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLR 283
            +GL +W+ DPT P+TTLSW++I G+G I   I  SSSYYV +GN+   EV+  +++++ 
Sbjct: 194 VDGLSEWVQDPTRPDTTLSWHIISGNGYIELDITKSSSYYVAVGNVYLNEVKATIDIQVE 253

Query: 284 AFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLS 343
             LY+T++AYY C+F +  C+LSV     NA VLTSP  + + S + +  ++SYEPRW++
Sbjct: 254 GVLYDTTNAYYNCSFPNDKCTLSVPLFGTNAAVLTSPGPKLNNSKNEFCAKLSYEPRWIA 313

Query: 344 YVVGICIFIPHFLLVAYHSIKR 365
           Y+V + +     L+V+    KR
Sbjct: 314 YIVCMGVVTALLLIVSSLFNKR 335

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569361|ref|XP_002525648.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535084|gb|EEF36766.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 143/316 (45%), Positives = 202/316 (63%), Gaps = 22/316 (6%)

Query: 39  PSPSPAPERE--EEQSHNHNNFDHE--HHAHRFERPELDRQNVGVSHEGNFTRSDAASWT 94
           PS S   E E   EQ  N NN  H+  H ++ +      R N+ +S+          + T
Sbjct: 62  PSASQVQEEEVRNEQIENGNNSHHQRNHPSYSYSSALPYRVNISISN---------MAPT 112

Query: 95  NVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIY 154
            ++DD W  ++V +TFWFF SMTLILG YG  NL LGP  S L++ +P FVQ +KV+E+ 
Sbjct: 113 EMTDDVWSCLVVLVTFWFFASMTLILGFYGSVNLELGPNCSYLIKTNPLFVQSIKVEEVD 172

Query: 155 ELKPGPKLYAFYNSPPLDTVSTWSE--KIIVSVPADSHQEWIIYLNKGSQINISYSVKSP 212
           E K GP LY F+  PP+D  +TW+E  K ++ +P    QEW  +LNKGS++ I Y++KSP
Sbjct: 173 EPKHGPMLYGFHKPPPMDVETTWTETHKALI-LP--HLQEWAYFLNKGSKVAIFYTIKSP 229

Query: 213 GSSVFL-IIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNS 271
            SS    +IAQG + L +W+ +P++PN+TLSWN+I GSG I Q I  SS+YY+ +GNLNS
Sbjct: 230 SSSPLSLVIAQGRDSLVEWIDEPSYPNSTLSWNIIFGSGKIEQEISESSNYYIAVGNLNS 289

Query: 272 EEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNW 331
           E+VEV+L  R+ AF+YNT++A+Y C+    LCSL +     N  VLTSP  ++    D+W
Sbjct: 290 EDVEVELKFRMNAFIYNTTNAFYMCSLGHRLCSLKLFLLGTNVAVLTSPVPQE---GDDW 346

Query: 332 QVRVSYEPRWLSYVVG 347
            V+VSY PRW++Y +G
Sbjct: 347 YVKVSYGPRWMTYFIG 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567564|ref|NP_195765.3| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|50253444|gb|AAT71924.1| At5g01450 [Arabidopsis thaliana] gi|53828623|gb|AAU94421.1| At5g01450 [Arabidopsis thaliana] gi|110737907|dbj|BAF00891.1| hypothetical protein [Arabidopsis thaliana] gi|332002963|gb|AED90346.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/316 (42%), Positives = 199/316 (62%), Gaps = 7/316 (2%)

Query: 50  EQSHNHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALT 109
           E   N + FDH       +RP  +R      H G+   S+     + S+D W  ++V  T
Sbjct: 27  EHHGNDSGFDHR------DRPPWNRSEYDYRH-GSVVASENVRNNSTSEDPWSCVVVVAT 79

Query: 110 FWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSP 169
           F  FVSMTLILG+YG  N+ LGP SS L++P+  FVQ V V+E+     G  LY    +P
Sbjct: 80  FCIFVSMTLILGLYGTTNVWLGPNSSFLIKPTSVFVQNVIVEELGNKGSGLILYGLNQAP 139

Query: 170 PLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQ 229
            LD ++ WSE   ++VP DS++ WI YLNKGS++ +SY+V+S GSS++L+IAQG +GL +
Sbjct: 140 QLDVLTKWSEVHYLAVPNDSYKYWIQYLNKGSRVKVSYNVESVGSSLYLVIAQGVDGLSE 199

Query: 230 WLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNT 289
           W+ DPT P+TTLSW++I  SG I Q I  SSSYYV +GN+   EV+  +++++   LY+T
Sbjct: 200 WVQDPTRPDTTLSWHIISDSGYIEQDITKSSSYYVAVGNVYLNEVKATIDIQVEGVLYDT 259

Query: 290 SDAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGIC 349
           ++AYY C+F +  C+LSV     NA VLTSP  + + S + +  ++SYEPRW++Y+V + 
Sbjct: 260 TNAYYNCSFPNDKCTLSVPLFGTNAAVLTSPGPKLNNSKNEFCAKLSYEPRWIAYIVCMG 319

Query: 350 IFIPHFLLVAYHSIKR 365
           +     L+V+    KR
Sbjct: 320 VVTALLLIVSSLFNKR 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2179187	444	APD2 "ABERRANT POLLEN DEVELOPM	0.809	0.677	0.432	1.5e-65
TAIR|locus:2042922	404	APD3 "ABERRANT POLLEN DEVELOPM	0.720	0.663	0.405	9.5e-50
TAIR|locus:4515102961	399	APD4 "ABERRANT POLLEN DEVELOPM	0.720	0.671	0.402	4.7e-48

TAIR|locus:2179187 APD2 "ABERRANT POLLEN DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 134/310 (43%), Positives = 198/310 (63%)

Query:    54 NHNNFDHEHHAHRFERPELDRQNVGVSHEGNFTRSDAASWTNVSDDTWPFIIVALTFWFF 113
             N + FDH       +RP  +R      H G+   S+     + S+D W  ++V  TF  F
Sbjct:    31 NDSGFDHR------DRPPWNRSEYDYRH-GSVVASENVRNNSTSEDPWSCVVVVATFCIF 83

Query:   114 VSMTLILGVYGPENLTLGPKSSILLQPSPFFVQKVKVQEIYELKPGPKLYAFYNSPPLDT 173
             VSMTLILG+YG  N+ LGP SS L++P+  FVQ V V+E+     G  LY    +P LD 
Sbjct:    84 VSMTLILGLYGTTNVWLGPNSSFLIKPTSVFVQNVIVEELGNKGSGLILYGLNQAPQLDV 143

Query:   174 VSTWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFD 233
             ++ WSE   ++VP DS++ WI YLNKGS++ +SY+V+S GSS++L+IAQG +GL +W+ D
Sbjct:   144 LTKWSEVHYLAVPNDSYKYWIQYLNKGSRVKVSYNVESVGSSLYLVIAQGVDGLSEWVQD 203

Query:   234 PTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAY 293
             PT P+TTLSW++I  SG I Q I  SSSYYV +GN+   EV+  +++++   LY+T++AY
Sbjct:   204 PTRPDTTLSWHIISDSGYIEQDITKSSSYYVAVGNVYLNEVKATIDIQVEGVLYDTTNAY 263

Query:   294 YKCTFADGLCSLSVLFPNGNAIVLTSPKTEQDTSNDNWQVRVSYEPRWLSYVVGICIFIP 353
             Y C+F +  C+LSV     NA VLTSP  + + S + +  ++SYEPRW++Y+V  C+ + 
Sbjct:   264 YNCSFPNDKCTLSVPLFGTNAAVLTSPGPKLNNSKNEFCAKLSYEPRWIAYIV--CMGVV 321

Query:   354 HFLLVAYHSI 363
               LL+   S+
Sbjct:   322 TALLLIVSSL 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

TAIR|locus:2042922 APD3 "ABERRANT POLLEN DEVELOPMENT 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 116/286 (40%), Positives = 175/286 (61%)

Query:    88 SDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQK 147
             SD +SW  +S   +  II+ L  WFF S+ LI GVYG E + LGP SSIL++PS  FV+ 
Sbjct:    29 SDESSWGLLSLSCFG-IIMGL--WFFASVCLIFGVYGSETVWLGPNSSILVKPSSIFVKS 85

Query:   148 VKVQEIYELKPGPKLYAFYN-SPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINIS 206
             +KV+E+   KPG +LY F   S P      W+E  ++SV  +S++ W  YLN+G+ +NIS
Sbjct:    86 IKVKELDFSKPGLQLYGFNGQSTPSGYFVNWTESRVLSVSQNSYKGWPYYLNRGTHMNIS 145

Query:   207 YSVKSPGSSVFLIIAQGNE--GL----RQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSS 260
             Y++   GS+V L+I +G++  G+    R  L D  F +T  SWN+IQGSG+I   I  S 
Sbjct:   146 YNILPKGSAVRLVITEGSQVIGMPFFYRSSLKDIAFRDTAWSWNLIQGSGMIQLDISKSK 205

Query:   261 SYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSV--LFPNGNAIVLT 318
              YY+ + NL  +++EV+L++ ++A LY+T    Y C+F++G CS  +   +P  N  V+T
Sbjct:   206 GYYLTVANLKRKDIEVELDIDVKAVLYDTKQTSYNCSFSNGECSFKMNERYPVENYAVVT 265

Query:   319 SPKTEQDTS-NDNWQVRVSYEPRWLSY--VVGICIFIPHFLLVAYH 361
             SP   Q  S +D W + +SY+PR ++Y    G+ +    F+LVA H
Sbjct:   266 SPALGQGVSIDDEWYIELSYQPRLIAYGSFTGVLL---SFMLVAIH 308

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

TAIR|locus:4515102961 APD4 "ABERRANT POLLEN DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 113/281 (40%), Positives = 168/281 (59%)

Query:    88 SDAASWTNVSDDTWPFIIVALTFWFFVSMTLILGVYGPENLTLGPKSSILLQPSPFFVQK 147
             SD +SW  +S   +  II+ L  WFF S+ LI GVYG E + LGP SSIL++PS  FV+ 
Sbjct:    29 SDESSWGLLSLSCFG-IIMGL--WFFASVCLIFGVYGSETVWLGPNSSILVKPSSIFVKS 85

Query:   148 VKVQEIYELKPGPKLYAFYN-SPPLDTVSTWSEKIIVSVPADSHQEWIIYLNKGSQINIS 206
             +  +E+   KPG +LY F   S P      W+E  ++SV  +S++ W  YLN+G+ +NIS
Sbjct:    86 INAKELDFSKPGLQLYGFNGQSTPSGYFVNWTESRVLSVSQNSYKGWPYYLNRGTHMNIS 145

Query:   207 YSVKSPGSSVFLIIAQGNEGL-RQWLFDPTFPNTTLSWNVIQGSGVIHQHIFTSSSYYVG 265
             Y++   GS+V L+I +G     R  L D  F +T  SWN+IQGSG+I   I  S  YY+ 
Sbjct:   146 YNILPKGSAVRLVITEGMPFFYRSSLKDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLT 205

Query:   266 LGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSV--LFPNGNAIVLTSPKTE 323
             + NL  ++VEV+L++ ++  LY+T  + Y C+F++G CS  +    P  N  V+TSP   
Sbjct:   206 VANLKRKDVEVELDIDVKVVLYDTKQSSYNCSFSNGECSFKMNERSPVENYAVVTSPALG 265

Query:   324 QDTS-NDNWQVRVSYEPRWLSY--VVGICIFIPHFLLVAYH 361
             Q  S +D W + +SY+PR ++Y    G+ +    F+LVA H
Sbjct:   266 QGVSIDDEWYIELSYQPRLIAYGSFTGVLL---SFMLVAIH 303


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      372       358   0.00081  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  278 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.07u 0.10s 28.17t   Elapsed:  00:00:01
  Total cpu time:  28.07u 0.10s 28.17t   Elapsed:  00:00:01
  Start:  Sat May 11 09:58:42 2013   End:  Sat May 11 09:58:43 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.2
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	80.05

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.0059  Score=60.95  Aligned_cols=59  Identities=3%  Similarity=-0.362  Sum_probs=53.5

Q ss_pred             CCcceEEEEeeccceEEEEEEEecCCCcEEEEEEecCccccccccCCCCCCCcceeeEEeccc
Q 017401          188 DSHQEWIIYLNKGSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNVIQGSG  250 (372)
Q Consensus       188 ~ShKeW~y~LNKGS~I~IsYsv~s~~SsL~LvIaqG~~~~~~Wl~dPt~PnttlSWnvI~G~G  250 (372)
                      .|.|.|..++|+|++.+.+|+    .+++.+.|++|-.++++|.+||+.+.++.+|+.+.|+-
T Consensus       147 ~S~ks~~~~~~~~f~r~~~ss----~vap~~~~~s~~~~~~~~~~~~~~~~~sq~qse~sq~~  205 (350)
T KOG4275|consen  147 RSKKSTRRRSDGYFNRRYHSS----PVAPGGPGLSLGLSTLSEHPEHGLHPHSQRQSENSQMS  205 (350)
T ss_pred             hhhhcchhhcccceeeeeccC----CCCCCCccccccccccccCCCCCCCchhhhhhhhcccc
Confidence            789999999999999998888    67888899999999999999999999999999665543

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=80.05  E-value=0.55  Score=39.60  Aligned_cols=92  Identities=18%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             EEEecCCCcceEEEEeeccceEEEEEEEecCC--CcEEEEEEecCccccccccCCCC--CCCcceeeEEecccEEEEEEe
Q 017401          182 IVSVPADSHQEWIIYLNKGSQINISYSVKSPG--SSVFLIIAQGNEGLRQWLFDPTF--PNTTLSWNVIQGSGVIHQHIF  257 (372)
Q Consensus       182 ~~~V~s~ShKeW~y~LNKGS~I~IsYsv~s~~--SsL~LvIaqG~~~~~~Wl~dPt~--PnttlSWnvI~G~G~ieq~I~  257 (372)
                      .+.|+++..+=....+.+|+.|.++|.|.+.+  ..+.+.|.           ||..  ..-...+... ..|..+++..
T Consensus         3 ~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~-----------~~~~~~~~i~~~~~~~-~~~~f~f~~~   70 (183)
T PF01105_consen    3 TFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIR-----------DPDPNGEVIYSKSDKE-SEGSFSFTAK   70 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEE-----------ecccCCceeeeecccc-cCCcEEEEec
Confidence            35678888888999999999999999999875  45555544           2211  1111112222 2378899999


Q ss_pred             cccceEEEEeccCCce---eEEEEEEEEEEE
Q 017401          258 TSSSYYVGLGNLNSEE---VEVQLNLRLRAF  285 (372)
Q Consensus       258 ~ss~YYVavgNlN~~d---Vev~Lni~V~a~  285 (372)
                      +.-.|.+-+.|..+..   ..|.+++.+...
T Consensus        71 ~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~~  101 (183)
T PF01105_consen   71 ESGEYQICFDNSSSSFSPSKRVSFDIDVGNE  101 (183)
T ss_dssp             -------------------------------
T ss_pred             cCCCEEEEEEcCCCCccccEEEEEEEEEeec
Confidence            9999999999998764   777777777543

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00