Citrus Sinensis ID: 017402

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHccccEEEEccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
matqfpddfkcpisleimsdpvilssghtfdrASIQRWLdsghrtcpitklplpdqpslipnhALRSLIsnftrtplpkpqlehanpnpqTLISVLTskssplesklESLTQLTklskrdsasrrkltesGAVSAVLNCLKIHSDGFTLQEKALSLLLNLsldddnkvglVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALtsfpenrkrvvscgavPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKtgssravqcslftlsclcccsqeicgdsrkeGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ
Flexible Loop (DISEMBL)
MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLEsltqltklskrdsasrrkltesgavsavLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYaltsfpenrkrvVSCGAVPILMRLADAGLERAVEVLSILVKckegreemmrVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNliqtlsgnpsmq
Low Complexity Region (SEG)
MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVltskssplesklesltQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAlslllnlsldddnKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQcslftlsclcccsQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ
Disordered region (IsUnstruct)
********FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPL*****LIPNHALRSLI**************************************************************AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE************************
Disordered Region (DISOPRED)
*ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFT************************SKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI*SD*FTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN****
Disordered Region (DISEMBL)
MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK**************SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ
Disordered Region (DISPRO)
*ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQ*****PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICxxxxxxxxxxxxxxxxxxxxxLSGNPSMQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
O81902	374	U-box domain-containing p	yes	no	0.983	0.978	0.647	1e-129
Q9ZV31	654	U-box domain-containing p	no	no	0.956	0.544	0.345	3e-48
Q5VRH9	611	U-box domain-containing p	no	no	0.954	0.581	0.358	1e-47
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.956	0.512	0.348	2e-45
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.956	0.512	0.348	2e-45
Q9SNC6	660	U-box domain-containing p	no	no	0.946	0.533	0.331	3e-45
Q9C9A6	628	U-box domain-containing p	no	no	0.948	0.562	0.346	9e-44
Q8GUG9	612	U-box domain-containing p	no	no	0.954	0.580	0.335	7e-43
Q8VZ40	632	U-box domain-containing p	no	no	0.954	0.561	0.337	8e-41
Q681N2	660	U-box domain-containing p	no	no	0.951	0.536	0.320	5e-40

>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1

 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/374 (64%), Positives = 295/374 (78%), Gaps = 8/374 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + P LI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLI 60

Query: 61  PNHALRSLISNFTRTPL-----PKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLI NF    L     P+ Q EH++   Q LIS L S+SS   SKLESLT+L +
Sbjct: 61  PNHALRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS+ RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           + R+V  LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G   RE+K
Sbjct: 179 IRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +L+ G+ + +Q SLF L+CLCCCS EI  + ++EGV++IC G  ++++EK+R
Sbjct: 298 GFVEVLVNVLRNGNLKGIQYSLFILNCLCCCSGEIVDEVKREGVVEICFGFEDNESEKIR 357

Query: 356 RNANNLIQTLSGNP 369
           RNA  L+ TL G P
Sbjct: 358 RNATILVHTLLGIP 371

Functions as an E3 ubiquitin ligase (By similarity). Involved in the age-dependent pseudo-self-compatibility process.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 219/382 (57%), Gaps = 26/382 (6%)

Query: 6   PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
           P++F+CPISLE+M+DPVI+SSG T++R  I++WL+ GH TCP T+  L     + PN+ L
Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSD-IMTPNYVL 315

Query: 66  RSLISNFTRT----PLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLT---------- 111
           RSLI+ +  +    P  +P +   +    +  S    + + +E  L  LT          
Sbjct: 316 RSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEELLLKLTSQQPEDRRSA 375

Query: 112 --QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169
             ++  L+K+++ +R  +  SGA+  ++N L I +D  T QE A++ +LNLS+  +NK  
Sbjct: 376 AGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRT-QEHAVTSILNLSICQENKGK 434

Query: 170 LV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG 228
           +V + GAV  +V  L+ GS + R  AA  + SL+V++ NK TIG    AI  LV+LL  G
Sbjct: 435 IVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIG-AAGAIPPLVTLLSEG 493

Query: 229 KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL---ADAGL-ERAVEVLSILVKC 284
              R KK+AATAL+ L  F  N+ + V  G VP+LMRL    ++G+ + ++ +L+IL   
Sbjct: 494 SQ-RGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSH 552

Query: 285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM 344
            +G+ E +  +  V V V  +++GS R  + S   L  LC  +Q+   +++K G++D+ +
Sbjct: 553 PDGKSE-VGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLI 611

Query: 345 GLLEDDNEKVRRNANNLIQTLS 366
            + E+  ++ +R A  L+   S
Sbjct: 612 EMAENGTDRGKRKAAQLLNRFS 633

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 214/377 (56%), Gaps = 22/377 (5%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            PD+F+CPISLE+M DPVI+SSG T++R+ IQ+WLDSGH+TCP T+ PL    SL PN  
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPL-SHTSLTPNFV 286

Query: 65  LRSLISNFTRT---PLPKPQ--------LEHANPNPQTLISVLTS-KSSPLESKLESLTQ 112
           L+SLIS +       LPK +         + ++ +   L+S++   +S   + +  +  +
Sbjct: 287 LKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGE 346

Query: 113 LTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA 172
           +  L+KR+  +R  + E+GA+  ++N L   SD  T QE A++ LLNLS+ ++NK  +V 
Sbjct: 347 IRLLAKRNVNNRICIAEAGAIPLLVNLLS-SSDPRT-QEHAVTALLNLSIHENNKASIVD 404

Query: 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR 232
             A+ ++V  L+ GS + R  AA  + SL+VV+ NK TIG    AI  L++LL +G   R
Sbjct: 405 SHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIG-AAGAIPPLINLLCDGS-PR 462

Query: 233 EKKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGR 288
            KK+AATA++ L  +  N+ R V  G V  LM          ++ A+ +LSIL    EG+
Sbjct: 463 GKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGK 522

Query: 289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE 348
             + R S  +   V+++KTGS R  + +   L  LC    E    ++  GV D    L E
Sbjct: 523 IVIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSE 581

Query: 349 DDNEKVRRNANNLIQTL 365
              ++ +R A+++++ +
Sbjct: 582 TGTDRAKRKASSILELM 598

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            PD+F+CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+  +    +L PN+ 
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYV 331

Query: 65  LRSLISNFTRTPLPKPQLEHANPNPQTL---------ISVLTSK--SSPLESKLESLTQL 113
           LRSLIS +  T   +P      PN  T          I  L SK  S   E +  +  +L
Sbjct: 332 LRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAEL 391

Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
             L+KR++ +R  + E+GA+  +L+ L         QE A++ LLNLS+ +DNK  +++ 
Sbjct: 392 RLLAKRNANNRICIAEAGAIPLLLSLLSSSD--LRTQEHAVTALLNLSIHEDNKASIISS 449

Query: 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
           GAV  +V  L+ GS + R  AA  + SL+V++  K TIG    AI ALV LL  G   R 
Sbjct: 450 GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQ-RG 507

Query: 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGRE 289
           KK+AA AL+ L  +  N+ R +  G VP++M L      A ++ A+ +LSIL    EG+ 
Sbjct: 508 KKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK- 566

Query: 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDICMGLL 347
             +  +  V V V+M+ +G+ R  + +   +  LC     +   +R +  G++     L 
Sbjct: 567 AAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELA 626

Query: 348 EDDNEKVRRNANNLIQTLS 366
            +  ++ +R A  L++ +S
Sbjct: 627 LNGTDRGKRKAVQLLERMS 645

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            PD+F+CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+  +    +L PN+ 
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYV 331

Query: 65  LRSLISNFTRTPLPKPQLEHANPNPQTL---------ISVLTSK--SSPLESKLESLTQL 113
           LRSLIS +  T   +P      PN  T          I  L SK  S   E +  +  +L
Sbjct: 332 LRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAEL 391

Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
             L+KR++ +R  + E+GA+  +L+ L         QE A++ LLNLS+ +DNK  +++ 
Sbjct: 392 RLLAKRNANNRICIAEAGAIPLLLSLLSSSD--LRTQEHAVTALLNLSIHEDNKASIISS 449

Query: 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
           GAV  +V  L+ GS + R  AA  + SL+V++  K TIG    AI ALV LL  G   R 
Sbjct: 450 GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQ-RG 507

Query: 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGRE 289
           KK+AA AL+ L  +  N+ R +  G VP++M L      A ++ A+ +LSIL    EG+ 
Sbjct: 508 KKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK- 566

Query: 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDICMGLL 347
             +  +  V V V+M+ +G+ R  + +   +  LC     +   +R +  G++     L 
Sbjct: 567 AAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELA 626

Query: 348 EDDNEKVRRNANNLIQTLS 366
            +  ++ +R A  L++ +S
Sbjct: 627 LNGTDRGKRKAVQLLERMS 645

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 212/383 (55%), Gaps = 31/383 (8%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            PDDF+CPISLE+M DPVI+SSG T++R  I++W++ GH TCP T+  L    +L PN+ 
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTST-TLTPNYV 314

Query: 65  LRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES-KLESLT------------ 111
           LRSLI+ +      +P    ++  P+     ++S SSP E+ K+E L             
Sbjct: 315 LRSLIAQWCEANDIEPPKPPSSLRPRK----VSSFSSPAEANKIEDLMWRLAYGNPEDQR 370

Query: 112 ----QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167
               ++  L+KR++ +R  + E+GA+  ++  L   +    +QE +++ LLNLS+ ++NK
Sbjct: 371 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS--TPDSRIQEHSVTALLNLSICENNK 428

Query: 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227
             +V+ GA+  +V  L+ GS + R  AA  + SL+V++ NK TIG    AI  LV LL  
Sbjct: 429 GAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGAL-GAIPPLVVLLNE 487

Query: 228 GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVK 283
           G   R KK+AATAL+ L  +  N+ + +  G +P L RL        ++ A+ +L+IL  
Sbjct: 488 GTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSS 546

Query: 284 CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDIC 343
             EG+  ++  S  V   V+ ++TGS R  + +   L  LC    +   +++K G++   
Sbjct: 547 HPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPL 605

Query: 344 MGLLEDDNEKVRRNANNLIQTLS 366
           + L  +  ++ +R A  L++ +S
Sbjct: 606 IDLAGNGTDRGKRKAAQLLERIS 628

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  177 bits (450), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 211/384 (54%), Gaps = 31/384 (8%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            P+DF CPISLE+M DP I+S+G T++R+ IQRW+D G+ +CP T+  L +  +L PN+ 
Sbjct: 243 IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL-ENFTLTPNYV 301

Query: 65  LRSLISNF-TRTPLPKP----------------QLEHANPNPQTLISVLTSKSSPLESKL 107
           LRSLIS + T+  + +P                 L       + L+  L+S+S  +E + 
Sbjct: 302 LRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQS--IEDRR 359

Query: 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFT-LQEKALSLLLNLSLDDDN 166
            +++++  LSKR + +R  + E+GA+  ++  L   SDG T  QE A++ +LNLS+ + N
Sbjct: 360 TAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLT--SDGDTETQENAVTCILNLSIYEHN 417

Query: 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ 226
           K  ++  GAV+ +V  LR GS + R  AA  + SL++ + NK  IG    AI ALV LLQ
Sbjct: 418 KELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIG-ASGAIMALVDLLQ 476

Query: 227 NGKLIREKKEAATALYALTSFPENRKRVVSCGAV-PILMRLADAGLER----AVEVLSIL 281
            G  +R KK+AATAL+ L  +  N+ R V  G V P++  L D+  ER    A+ +LS+L
Sbjct: 477 YGS-VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVL 535

Query: 282 VKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD 341
              +  +  ++R +  +   +  L+    R  + +   L CLC    E      + G + 
Sbjct: 536 ASNQVAKTAILR-ANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVV 594

Query: 342 ICMGLLEDDNEKVRRNANNLIQTL 365
             M L  D  E+ +R AN+L++ L
Sbjct: 595 PLMELSRDGTERAKRKANSLLELL 618

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 207/373 (55%), Gaps = 18/373 (4%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            P DF CP+SLE+M DPVI+++G T++RA IQRW+D G+ TCP T+  L +  +L PN+ 
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKL-ENFTLTPNYV 299

Query: 65  LRSLISNF-----TRTPLPKPQLEHANPNPQTLISVLTSK--SSPLESKLESLTQLTKLS 117
           LRSLIS +        P         N    ++I  L  +  S   E +  +++++  LS
Sbjct: 300 LRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLS 359

Query: 118 KRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS 177
           KR + +R  + E+GA+  ++N L   S+    QE A++ +LNLS+ ++NK  ++  GAV+
Sbjct: 360 KRSTDNRILIAEAGAIPVLVNLLT--SEDVATQENAITCVLNLSIYENNKELIMFAGAVT 417

Query: 178 RVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEA 237
            +V  LR G+ + R  AA  + SL++ + NK  IG    AI ALV LL+NG   R KK+A
Sbjct: 418 SIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSG-AIPALVDLLENGT-PRGKKDA 475

Query: 238 ATALYALTSFPENRKRVVSCGAVPILMR-LADAGLERAVE----VLSILVKCKEGREEMM 292
           ATAL+ L  +  N+ R V  G V  L++ L+D+   R V+    +LS+L   ++ +  ++
Sbjct: 476 ATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIV 535

Query: 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNE 352
           + +  +   + +L+T  +R  + +   L  LC    E      + G +   M L ++  E
Sbjct: 536 K-ANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTE 594

Query: 353 KVRRNANNLIQTL 365
           + +R A +L++ L
Sbjct: 595 RGKRKAISLLELL 607

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 212/379 (55%), Gaps = 24/379 (6%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            P+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++  L     L PN+ 
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYV 306

Query: 65  LRSLISNFTRT---PLPKPQ---------LEHANPNPQTLISVLTSK--SSPLESKLESL 110
           L+SLI+ +  +    LP+ Q            ++   +T +  L  K  +   E +  + 
Sbjct: 307 LKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAA 366

Query: 111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170
            +L  L+KR+  +R  + E+GA+  ++  L   S     QE +++ LLNLS+++ NK  +
Sbjct: 367 GELRLLAKRNVDNRVCIAEAGAIPLLVELLS--SPDPRTQEHSVTALLNLSINEGNKGAI 424

Query: 171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230
           V  GA++ +V  L+ GS + R  AA  + SL+V++ NK  I     AI AL+SLL+ G  
Sbjct: 425 VDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAI-GAAGAIQALISLLEEGTR 483

Query: 231 IREKKEAATALYALTSFPENRKRVVSCGAVPILMR-LADAG---LERAVEVLSILVKCKE 286
            R KK+AATA++ L  +  N+ R V  G V  L R L DAG   ++ A+ +L+IL   +E
Sbjct: 484 -RGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQE 542

Query: 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGL 346
           G+  +      + V V++++TGS R  + +   L  LC  + E    +R+ G       L
Sbjct: 543 GKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKEL 601

Query: 347 LEDDNEKVRRNANNLIQTL 365
            E+  ++ +R A +L++ +
Sbjct: 602 TENGTDRAKRKAASLLELI 620

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score =  165 bits (418), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 204/374 (54%), Gaps = 20/374 (5%)

Query: 5   FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
            P +F CPI+LEIM DPVI+++G T+++ SIQ+W D+GH+TCP T+  L D  SL PN A
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQEL-DHLSLAPNFA 348

Query: 65  LRSLISNF---TRTPLPKPQLEHANPNPQT-----LISVLTSKSSPLESKLESLTQLTKL 116
           L++LI  +       +P+ ++   + N Q      L+  L+  SS LE +  S+ Q+  L
Sbjct: 349 LKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALS--SSQLEEQRRSVKQMRLL 406

Query: 117 SKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAV 176
           ++ +  +R  +  +GA+  ++  L     G  +QE A++ LLNLS+D+ NK  +  EGA+
Sbjct: 407 ARENPENRVLIANAGAIPLLVQLLSYPDSG--IQENAVTTLLNLSIDEVNKKLISNEGAI 464

Query: 177 SRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKE 236
             ++  L  G+ + R  +A  + SL++++ NK TIG     I  LV LLQ+G L R KK+
Sbjct: 465 PNIIEILENGNREARENSAAALFSLSMLDENKVTIG-LSNGIPPLVDLLQHGTL-RGKKD 522

Query: 237 AATALYALTSFPENRKRVVSCGAVP----ILMRLADAGLERAVEVLSILVKCKEGREEMM 292
           A TAL+ L+    N+ R +  G V     +L       ++ A+ +L +L    EGR+ + 
Sbjct: 523 ALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIG 582

Query: 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNE 352
           ++S  +   V+ ++ G+ +  +C+   L  L   +      + + GV +  + +      
Sbjct: 583 QLS-FIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTN 641

Query: 353 KVRRNANNLIQTLS 366
           + +R AN LIQ +S
Sbjct: 642 RAQRKANALIQLIS 655

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
359496637	363	PREDICTED: U-box domain-containing prote	0.970	0.994	0.735	1e-142
255555111	374	E3 ubiquitin ligase PUB14, putative [Ric	0.973	0.967	0.700	1e-131
312162768	374	unknown [Arabidopsis lyrata]	0.983	0.978	0.652	1e-128
224114207	374	predicted protein [Populus trichocarpa]	0.962	0.957	0.664	1e-127
124302211	374	plant U box protein 8 [Arabidopsis thali	0.983	0.978	0.652	1e-127
15234419	374	U-box domain-containing protein 8 [Arabi	0.983	0.978	0.647	1e-127
449433916	365	PREDICTED: U-box domain-containing prote	0.975	0.994	0.690	1e-126
449524268	365	PREDICTED: U-box domain-containing prote	0.975	0.994	0.687	1e-125
391224324	374	U-box [Arabidopsis halleri]	0.978	0.973	0.658	1e-125
312162757	374	unknown [Arabidopsis lyrata]	0.983	0.978	0.652	1e-124

>gi|359496637|ref|XP_003635287.1| PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera] gi|359497783|ref|XP_003635641.1| PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera] gi|147827038|emb|CAN62279.1| hypothetical protein VITISV_042771 [Vitis vinifera] gi|296084802|emb|CBI25940.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/367 (73%), Positives = 312/367 (85%), Gaps = 6/367 (1%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MATQFPDDFKCPISLEIMSDPVILSSGHTFDR+SIQRWLDSGHRTCPITKLPL + PSLI
Sbjct: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLSEHPSLI 60

Query: 61  PNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRD 120
           PNHALRSLISN+T    PKPQ    +P PQTLI+ LTS SSPL SKL SL QL + SKR+
Sbjct: 61  PNHALRSLISNYTLVSAPKPQ---PHPEPQTLIATLTSPSSPLHSKLHSLDQLNQFSKRN 117

Query: 121 SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180
            A RR+LTESGAVSAVLNC  + S+  +LQEKALSLLLNLSLDDDNKVGLVAEGA+ R+V
Sbjct: 118 PAFRRRLTESGAVSAVLNC--VGSEDSSLQEKALSLLLNLSLDDDNKVGLVAEGAIGRIV 175

Query: 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240
           AAL   SPDCRA+AAT++TSLAVVEVN+ATIG YPYAI ALVSLL++GK  REKKEAATA
Sbjct: 176 AALHGRSPDCRAVAATMLTSLAVVEVNRATIGTYPYAIRALVSLLRDGK-GREKKEAATA 234

Query: 241 LYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGV 300
           LYA+ SFP+NR+R V CGAVPIL+R+AD+GLERAVEVL +L KCKEGREEM + +GCV +
Sbjct: 235 LYAICSFPDNRRRAVECGAVPILIRIADSGLERAVEVLGLLAKCKEGREEMEKFNGCVKI 294

Query: 301 FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360
            V++L+ GSSR VQ +L TL+ LC     +C ++ KEGVL+ICMGL+EDDNEKVRRNA++
Sbjct: 295 LVRVLRNGSSRGVQYALMTLNSLCSNGDGMCLETMKEGVLEICMGLVEDDNEKVRRNASS 354

Query: 361 LIQTLSG 367
           L+QTL G
Sbjct: 355 LVQTLQG 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555111|ref|XP_002518593.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis] gi|223542438|gb|EEF43980.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/374 (70%), Positives = 307/374 (82%), Gaps = 12/374 (3%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           M T  P+DFKCPISLEIMSDPVILSSGHTFDR+SIQRWLDSGHRTCPITKLPLP+ P LI
Sbjct: 1   MGTHLPEDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLPEHPPLI 60

Query: 61  PNHALRSLISNFTRTPLPKPQLEHANPNP-------QTLISVLTSKSSPLESKLESLTQL 113
           PNHALRSLISNFT   L   +L+H N  P       QTLIS LTS SSPL SKL+SL++L
Sbjct: 61  PNHALRSLISNFTL--LFSSKLQHPNTPPPPKSPNTQTLISTLTSPSSPLNSKLDSLSRL 118

Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
            +++K D   RR+LTESGAVSAVLNC  ++S    LQEKAL+LLLNLSLDDDNKVGLVAE
Sbjct: 119 IRITKLDPFLRRQLTESGAVSAVLNC--VNSPELALQEKALTLLLNLSLDDDNKVGLVAE 176

Query: 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
           GA+ RVVA LR GSPDCRAI  TI+TSLAVVEVNKATIG YP AI ALVS+L  GK  RE
Sbjct: 177 GAIRRVVAILRSGSPDCRAIGCTILTSLAVVEVNKATIGAYPNAIQALVSILSCGKG-RE 235

Query: 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMR 293
            KE+ATALYA+ SF +NR+R V  GAVPIL+R+   GLERAVEVL++LVKCKEGREEM+R
Sbjct: 236 VKESATALYAICSFVDNRRRAVEFGAVPILVRICGMGLERAVEVLNVLVKCKEGREEMVR 295

Query: 294 VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEK 353
           ++GCV V V ++K GSSR +QC+LFTL+CLCC S +IC ++ KEGVL+IC+ L+ED+NEK
Sbjct: 296 INGCVKVLVNVIKNGSSRGLQCALFTLNCLCCYSLDICLEAIKEGVLEICVRLVEDENEK 355

Query: 354 VRRNANNLIQTLSG 367
           + RNA++L+QTLSG
Sbjct: 356 IMRNASSLVQTLSG 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312162768|gb|ADQ37381.1| unknown [Arabidopsis lyrata]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/374 (65%), Positives = 298/374 (79%), Gaps = 8/374 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + PSLI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSENPSLI 60

Query: 61  PNHALRSLISNFTR-----TPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLISNF       +  P+ Q EH++   Q LIS L S+SS   SKLESL++L +
Sbjct: 61  PNHALRSLISNFAHVSPKESSRPRTQQEHSHSQSQALISTLVSRSSSNASKLESLSRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS  RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSLIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           + R+VA LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALV LL+ G   RE+K
Sbjct: 179 IRRIVAVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVYLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +L+ GS + +Q SLF L+CLCCCS+EI  + ++EGV++IC GL ++++EK+R
Sbjct: 298 GFVEVLVNVLRNGSLKGIQYSLFILNCLCCCSREIVDEVKREGVVEICFGLEDNESEKIR 357

Query: 356 RNANNLIQTLSGNP 369
           RNA  L+ TL G P
Sbjct: 358 RNATILVHTLLGVP 371

Source: Arabidopsis lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114207|ref|XP_002316696.1| predicted protein [Populus trichocarpa] gi|222859761|gb|EEE97308.1| predicted protein [Populus trichocarpa]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/381 (66%), Positives = 302/381 (79%), Gaps = 23/381 (6%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MAT  PDDFKCPISLEIMSDPVILSSGHTFDR+SIQRWLDSGHRTCPITKLPLP+ P LI
Sbjct: 1   MATHLPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLPEHPCLI 60

Query: 61  PNHALRSLISNFTRTPLPKPQLEHANPNP--------------QTLISVLTSKSSPLESK 106
           PNHALRSLIS+FT   +PK Q    +PNP              Q LI  L S SS LESK
Sbjct: 61  PNHALRSLISSFT---IPKSQ---PDPNPCRNLNPDQSKKYQTQLLIYTLVSPSSTLESK 114

Query: 107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN 166
           L SL+QLT+L+K DS  RR+LTESGAVSAVLNC  ++S    +QEKAL+LLLNLSLDDDN
Sbjct: 115 LHSLSQLTRLTKLDSGPRRQLTESGAVSAVLNC--VNSTESEIQEKALALLLNLSLDDDN 172

Query: 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ 226
           KVGLVAEG +SRV+  +R GS   RAI  TI+TSLAVVEVNKATIG YP AI  L+ +L 
Sbjct: 173 KVGLVAEGVISRVINVIRAGSASSRAIGCTILTSLAVVEVNKATIGAYPNAIKTLIWVLY 232

Query: 227 NGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKE 286
           +GK  RE +EAATALYA+ SF +NRKR V CGAVP+LM++   GLERAVEVLS+LVKCKE
Sbjct: 233 SGKG-REVREAATALYAICSFVDNRKRAVECGAVPLLMKIGGMGLERAVEVLSLLVKCKE 291

Query: 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGL 346
           GREEM +V+GC+ V VK+++ GS R VQC+L TL+CLCC ++E+  ++ KEGVL+IC+G 
Sbjct: 292 GREEMRKVNGCLEVLVKVIRNGSERGVQCALLTLTCLCCFAEEMRVEAEKEGVLEICVGF 351

Query: 347 LEDDNEKVRRNANNLIQTLSG 367
           L+D+NEK+RR+A++L+QTLSG
Sbjct: 352 LDDENEKIRRHASSLVQTLSG 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124302211|gb|ABN05290.1| plant U box protein 8 [Arabidopsis thaliana]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/374 (65%), Positives = 296/374 (79%), Gaps = 8/374 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + PSLI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPSLI 60

Query: 61  PNHALRSLISNFTR-----TPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLI NF       +  P+ Q EH++   Q LIS L S+SS   SKLESLT+L +
Sbjct: 61  PNHALRSLILNFAHVSPKESSRPRTQQEHSHSQSQALISTLVSRSSSNASKLESLTRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS+ RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           V R+VA LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G   RE+K
Sbjct: 179 VRRIVAVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +LK G+ + +Q SLF L+CLCCCS EI  + ++EGV++IC G  ++++EK+R
Sbjct: 298 GFVEVLVNVLKNGNLKGIQYSLFILNCLCCCSGEIVDEVKREGVVEICFGFEDNESEKIR 357

Query: 356 RNANNLIQTLSGNP 369
           RNA  L+  L G P
Sbjct: 358 RNATILVHNLLGIP 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234419|ref|NP_193866.1| U-box domain-containing protein 8 [Arabidopsis thaliana] gi|75100459|sp|O81902.1|PUB8_ARATH RecName: Full=U-box domain-containing protein 8; AltName: Full=Plant U-box protein 8 gi|3402754|emb|CAA20200.1| putative protein [Arabidopsis thaliana] gi|7268931|emb|CAB79134.1| putative protein [Arabidopsis thaliana] gi|332659044|gb|AEE84444.1| U-box domain-containing protein 8 [Arabidopsis thaliana]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/374 (64%), Positives = 295/374 (78%), Gaps = 8/374 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + P LI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLI 60

Query: 61  PNHALRSLISNFTRTPL-----PKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLI NF    L     P+ Q EH++   Q LIS L S+SS   SKLESLT+L +
Sbjct: 61  PNHALRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS+ RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           + R+V  LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G   RE+K
Sbjct: 179 IRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +L+ G+ + +Q SLF L+CLCCCS EI  + ++EGV++IC G  ++++EK+R
Sbjct: 298 GFVEVLVNVLRNGNLKGIQYSLFILNCLCCCSGEIVDEVKREGVVEICFGFEDNESEKIR 357

Query: 356 RNANNLIQTLSGNP 369
           RNA  L+ TL G P
Sbjct: 358 RNATILVHTLLGIP 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433916|ref|XP_004134742.1| PREDICTED: U-box domain-containing protein 8-like [Cucumis sativus]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/368 (69%), Positives = 299/368 (81%), Gaps = 5/368 (1%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA  +PDDFKCPISLEIMSDPVILSSGHTFDR+SIQRWLD+GHRTCPIT+LPLP  PSLI
Sbjct: 1   MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLI 60

Query: 61  PNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRD 120
           PNHALRSLISNF    L KP L H  P PQTLIS+L S SS L+SKL+ L QL ++SKRD
Sbjct: 61  PNHALRSLISNFNPVSLSKPFLPH--PPPQTLISILISPSSSLDSKLDCLNQLARVSKRD 118

Query: 121 SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180
           SA RR+LTESGAVSAVL C  + SD  +LQEKALSLLLNLSLDDDNKVGLVAEGA+   V
Sbjct: 119 SAVRRRLTESGAVSAVLKC--VGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTV 176

Query: 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240
           AAL+  S DCRA+AAT++TSLAVVEVNKATIG YPYA+ +LV LL+NG   RE+KEAATA
Sbjct: 177 AALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGN-NREQKEAATA 235

Query: 241 LYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGV 300
           LYA+ SFP NR RVV CGAVPIL+++A++GL+RAVEVL +L KCKEGREEM    GCV +
Sbjct: 236 LYAICSFPGNRLRVVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEI 295

Query: 301 FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360
             ++L+ GS R VQ +L TL+ LCC  + +C ++R+EG+L ICM L++DD+EK+R NA N
Sbjct: 296 LSRVLRNGSPRGVQYALLTLASLCCHCERLCVEARREGILGICMTLIDDDSEKIRANAAN 355

Query: 361 LIQTLSGN 368
           LI  L GN
Sbjct: 356 LIHILKGN 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524268|ref|XP_004169145.1| PREDICTED: U-box domain-containing protein 8-like [Cucumis sativus]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/368 (68%), Positives = 299/368 (81%), Gaps = 5/368 (1%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA  +PDDFKCPISLEIMSDPVILSSGHTFDR+SIQRWLD+GHRTCPIT+LPLP  PSLI
Sbjct: 1   MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLI 60

Query: 61  PNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRD 120
           PNHALRSLISNF    L KP L H  P PQTLIS+L S SS L+SKL+ L QL ++SKRD
Sbjct: 61  PNHALRSLISNFNPVSLSKPFLPH--PPPQTLISILISPSSSLDSKLDCLNQLARVSKRD 118

Query: 121 SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180
           SA RR+LTESGAVSAVL C  + SD  +LQEKALSLLLNLSLDDDNKVGLVAEGA+   V
Sbjct: 119 SAVRRRLTESGAVSAVLKC--VGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTV 176

Query: 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240
           AAL+  S DCRA+AAT++TSLAVVEVNKATIG YPYA+ +LV LL+NG   RE+KEAATA
Sbjct: 177 AALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGN-NREQKEAATA 235

Query: 241 LYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGV 300
           LYA+ SFP NR RVV CGAVPIL+++A++GL+RAVEVL +L KCKEGREEM    GCV +
Sbjct: 236 LYAICSFPGNRLRVVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEI 295

Query: 301 FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360
             ++L+ GS R VQ +L TL+ LCC  + +C ++R+EG+L ICM L++DD+EK+R NA N
Sbjct: 296 LSRVLRNGSPRGVQYALLTLASLCCHCERLCVEARREGILGICMTLIDDDSEKIRANAAN 355

Query: 361 LIQTLSGN 368
           LI  L G+
Sbjct: 356 LIHILKGS 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391224324|emb|CCI61497.1| U-box [Arabidopsis halleri]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/372 (65%), Positives = 298/372 (80%), Gaps = 8/372 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + PSLI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSENPSLI 60

Query: 61  PNHALRSLISNFTR-----TPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLISNF       +  P+ Q EH+    Q LIS L S+SS   SKLESL++L +
Sbjct: 61  PNHALRSLISNFAHVSSKESSRPRTQQEHSQSQSQALISTLVSRSSSNASKLESLSRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS+ RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           + R+VA LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G   RE+K
Sbjct: 179 IRRIVAVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +LK GS + +Q SLF L+CLCCCS+EI  + ++EGV++IC GL ++++EK+R
Sbjct: 298 GFVEVLVNILKNGSLKGIQYSLFILNCLCCCSREIVDEVKREGVVEICFGLEDNESEKIR 357

Query: 356 RNANNLIQTLSG 367
           RNA  L+ TL G
Sbjct: 358 RNATILVHTLLG 369

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312162757|gb|ADQ37371.1| unknown [Arabidopsis lyrata]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/374 (65%), Positives = 297/374 (79%), Gaps = 8/374 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
           MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + PSLI
Sbjct: 1   MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSENPSLI 60

Query: 61  PNHALRSLISNFTR-----TPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
           PNHALRSLISNF       +  P+ Q EH+    Q LIS L S+SS   SKLESL++L +
Sbjct: 61  PNHALRSLISNFAHVSPKESSRPRTQQEHSQSQSQALISTLVSRSSSNASKLESLSRLVR 120

Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
           L+KRDS  RRK+TESGAV A L+C  + S    LQEK+LSLLLNLSL+DDNKVGLVA+G 
Sbjct: 121 LTKRDSLIRRKVTESGAVRAALDC--VDSGNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
           + R+VA LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALV LL+ G   RE+K
Sbjct: 179 IRRIVAVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVYLLRVGN-DRERK 237

Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
           E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
           G V V V +L+ GS + +Q SLF L+CLCCCS+EI  + ++EGV++IC GL ++++EK+R
Sbjct: 298 GFVEVLVNVLRNGSLKGIQYSLFILNCLCCCSREIADEVKREGVVEICFGLEDNESEKIR 357

Query: 356 RNANNLIQTLSGNP 369
           RNA  L+ TL G P
Sbjct: 358 RNATILVHTLLGVP 371

Source: Arabidopsis lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2141226	374	PUB8 "plant U-box 8" [Arabidop	0.983	0.978	0.558	2.3e-101
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.951	0.579	0.340	4.6e-41
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.954	0.511	0.314	3.9e-38
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.954	0.537	0.304	3e-37
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.948	0.558	0.311	1.1e-36
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.954	0.537	0.291	3e-36
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.951	0.563	0.312	4.8e-36
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.661	0.296	0.299	9.7e-36
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.951	0.578	0.309	1.9e-35
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.663	0.325	0.275	6.1e-32

TAIR|locus:2141226 PUB8 "plant U-box 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 209/374 (55%), Positives = 259/374 (69%)

Query:     1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
             MA   P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + P LI
Sbjct:     1 MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLI 60

Query:    61 PNHALRSLISNFTRTPL-----PKPQLEHANPNPQTLISVXXXXXXXXXXXXXXXXQLTK 115
             PNHALRSLI NF    L     P+ Q EH++   Q LIS                 +L +
Sbjct:    61 PNHALRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVR 120

Query:   116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVAEGA 175
             L+KRDS+ RRK+TESGAV A L+C  + S    LQEK+             KVGLVA+G 
Sbjct:   121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178

Query:   176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
             + R+V  LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G   RE+K
Sbjct:   179 IRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237

Query:   236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
             E+ATALYAL SFP+NRKRVV CG+VPIL+  AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct:   238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297

Query:   296 GCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLEDDNEKVR 355
             G V V V +L+ G+ + +Q              EI  + ++EGV++IC G  ++++EK+R
Sbjct:   298 GFVEVLVNVLRNGNLKGIQYSLFILNCLCCCSGEIVDEVKREGVVEICFGFEDNESEKIR 357

Query:   356 RNANNLIQTLSGNP 369
             RNA  L+ TL G P
Sbjct:   358 RNATILVHTLLGIP 371

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;NAS

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 128/376 (34%), Positives = 196/376 (52%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             PD+F+CPISLE+M DPVI+SSG T++R+ IQ+WLDSGH+TCP T+ PL    SL PN  L
Sbjct:   229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPL-SHTSLTPNFVL 287

Query:    66 RSLISNFTRT---PLPKPQ--------LEHANPNPQTLISVXXXXXXXXXXXXXXXX-QL 113
             +SLIS +       LPK +         + ++ +   L+S+                 ++
Sbjct:   288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347

Query:   114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVAE 173
               L+KR+  +R  + E+GA+  ++N L   SD  T QE A             K  +V  
Sbjct:   348 RLLAKRNVNNRICIAEAGAIPLLVNLLS-SSDPRT-QEHAVTALLNLSIHENNKASIVDS 405

Query:   174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
              A+ ++V  L+ GS + R  AA  + SL+VV+ NK TIG    AI  L++LL +G   R 
Sbjct:   406 HAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG-AIPPLINLLCDGSP-RG 463

Query:   234 KKEAATALYALTSFPENRKRVVSCGAVPILMR-LAD-AG--LERAVEVLSILVKCKEGRE 289
             KK+AATA++ L  +  N+ R V  G V  LM  L D  G  ++ A+ +LSIL    EG+ 
Sbjct:   464 KKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKI 523

Query:   290 EMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLED 349
              + R S  +   V+++KTGS R  +              E    ++  GV D    L E 
Sbjct:   524 VIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSET 582

Query:   350 DNEKVRRNANNLIQTL 365
               ++ +R A+++++ +
Sbjct:   583 GTDRAKRKASSILELM 598

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 414 (150.8 bits), Expect = 3.9e-38, P = 3.9e-38
 Identities = 119/378 (31%), Positives = 185/378 (48%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             PD+F+CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+  +    +L PN+ L
Sbjct:   274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTS-ALTPNYVL 332

Query:    66 RSLISNFTRTPLPKPQLEHANPN-PQTLISVXXXXXXXXXXXX----------XXXXQLT 114
             RSLIS +  T   +P      PN P    S                           +L 
Sbjct:   333 RSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELR 392

Query:   115 KLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVAEG 174
              L+KR++ +R  + E+GA+  +L+ L   S     QE A             K  +++ G
Sbjct:   393 LLAKRNANNRICIAEAGAIPLLLSLLS--SSDLRTQEHAVTALLNLSIHEDNKASIISSG 450

Query:   175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREK 234
             AV  +V  L+ GS + R  AA  + SL+V++  K TIG    AI ALV LL  G   R K
Sbjct:   451 AVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMG-AIPALVVLLGEGSQ-RGK 508

Query:   235 KEAATALYALTSFPENRKRVVSCGAVPILMRLAD----AGLERAVEVLSILVKCKEGREE 290
             K+AA AL+ L  +  N+ R +  G VP++M L      A ++ A+ +LSIL    EG+  
Sbjct:   509 KDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAA 568

Query:   291 MMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKE--GVLDICMGLLE 348
             +      V V V+M+ +G+ R  +               +   +R +  G++     L  
Sbjct:   569 IGAAEP-VPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELAL 627

Query:   349 DDNEKVRRNANNLIQTLS 366
             +  ++ +R A  L++ +S
Sbjct:   628 NGTDRGKRKAVQLLERMS 645

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 115/378 (30%), Positives = 188/378 (49%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             PDDF+CPISLE+M DPVI+SSG T++R  I++W++ GH TCP T+  L    +L PN+ L
Sbjct:   257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTST-TLTPNYVL 315

Query:    66 RSLIS-----NFTRTPLPKPQLE------HANPNPQTLIS--VXXXXXXXXXXXXXXXXQ 112
             RSLI+     N    P P   L        ++P     I   +                +
Sbjct:   316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGE 375

Query:   113 LTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVA 172
             +  L+KR++ +R  + E+GA+  ++  L        +QE +             K  +V+
Sbjct:   376 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDS--RIQEHSVTALLNLSICENNKGAIVS 433

Query:   173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR 232
              GA+  +V  L+ GS + R  AA  + SL+V++ NK TIG    AI  LV LL  G   R
Sbjct:   434 AGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALG-AIPPLVVLLNEGTQ-R 491

Query:   233 EKKEAATALYALTSFPENRKRVVSCGAVPILMRL-ADAG---LERAVEVLSILVKCKEGR 288
              KK+AATAL+ L  +  N+ + +  G +P L RL  + G   ++ A+ +L+IL    EG+
Sbjct:   492 GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGK 551

Query:   289 EEMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLE 348
               ++  S  V   V+ ++TGS R  +              +   +++K G++   + L  
Sbjct:   552 A-IIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAG 610

Query:   349 DDNEKVRRNANNLIQTLS 366
             +  ++ +R A  L++ +S
Sbjct:   611 NGTDRGKRKAAQLLERIS 628

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 118/379 (31%), Positives = 196/379 (51%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             P+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++  L     L PN+ L
Sbjct:   249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVL 307

Query:    66 RSLISNFTRT---PLPKPQLE---------HANPNPQTLIS--VXXXXXXXXXXXXXXXX 111
             +SLI+ +  +    LP+ Q            ++   +T +   +                
Sbjct:   308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367

Query:   112 QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLV 171
             +L  L+KR+  +R  + E+GA+  ++  L    D  T QE +             K  +V
Sbjct:   368 ELRLLAKRNVDNRVCIAEAGAIPLLVELLS-SPDPRT-QEHSVTALLNLSINEGNKGAIV 425

Query:   172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLI 231
               GA++ +V  L+ GS + R  AA  + SL+V++ NK  IG    AI AL+SLL+ G   
Sbjct:   426 DAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG-AIQALISLLEEGTR- 483

Query:   232 REKKEAATALYALTSFPENRKRVVSCGAV-PILMRLADAG---LERAVEVLSILVKCKEG 287
             R KK+AATA++ L  +  N+ R V  G V P+   L DAG   ++ A+ +L+IL   +EG
Sbjct:   484 RGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEG 543

Query:   288 REEMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMG-L 346
             +  +      + V V++++TGS R  +              E    +R+ G  D+ +  L
Sbjct:   544 KTAIAEAES-IPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGA-DVALKEL 601

Query:   347 LEDDNEKVRRNANNLIQTL 365
              E+  ++ +R A +L++ +
Sbjct:   602 TENGTDRAKRKAASLLELI 620

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 3.0e-36, P = 3.0e-36
 Identities = 108/371 (29%), Positives = 182/371 (49%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             P +F CPI+LEIM DPVI+++G T+++ SIQ+W D+GH+TCP T+  L D  SL PN AL
Sbjct:   291 PHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQEL-DHLSLAPNFAL 349

Query:    66 RSLISNFTRT---PLPKPQLEHANPNPQ---TLISVXXXXXXXXXXXXXXXXQLTKLSKR 119
             ++LI  +       +P+ ++   + N Q     + V                Q+  L++ 
Sbjct:   350 KNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARE 409

Query:   120 DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVAEGAVSRV 179
             +  +R  +  +GA+  ++  L     G  +QE A             K  +  EGA+  +
Sbjct:   410 NPENRVLIANAGAIPLLVQLLSYPDSG--IQENAVTTLLNLSIDEVNKKLISNEGAIPNI 467

Query:   180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT 239
             +  L  G+ + R  +A  + SL++++ NK TIG     I  LV LLQ+G L R KK+A T
Sbjct:   468 IEILENGNREARENSAAALFSLSMLDENKVTIG-LSNGIPPLVDLLQHGTL-RGKKDALT 525

Query:   240 ALYALTSFPENRKRVVSCGAV-PILMRLADAGL---ERAVEVLSILVKCKEGREEMMRVS 295
             AL+ L+    N+ R +  G V P+L  L D  L   + A+ +L +L    EGR+ + ++S
Sbjct:   526 ALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLS 585

Query:   296 GCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLEDDNEKVR 355
               +   V+ ++ G+ +  +                   + + GV +  + +      + +
Sbjct:   586 -FIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQ 644

Query:   356 RNANNLIQTLS 366
             R AN LIQ +S
Sbjct:   645 RKANALIQLIS 655

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 4.8e-36, P = 4.8e-36
 Identities = 119/381 (31%), Positives = 190/381 (49%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             P+DF CPISLE+M DP I+S+G T++R+ IQRW+D G+ +CP T+  L +  +L PN+ L
Sbjct:   244 PEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL-ENFTLTPNYVL 302

Query:    66 RSLISNF-TRTPLPKP------QLEHANPNPQTLIS--------VXXXXXXXXXXXXXXX 110
             RSLIS + T+  + +P      + ++++ + + L          V               
Sbjct:   303 RSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQSIEDRRTAV 362

Query:   111 XQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFT-LQEKAXXXXXXXXXXXXXKVG 169
              ++  LSKR + +R  + E+GA+  ++  L   SDG T  QE A             K  
Sbjct:   363 SEIRSLSKRSTDNRILIAEAGAIPVLVKLLT--SDGDTETQENAVTCILNLSIYEHNKEL 420

Query:   170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229
             ++  GAV+ +V  LR GS + R  AA  + SL++ + NK  IG    AI ALV LLQ G 
Sbjct:   421 IMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASG-AIMALVDLLQYGS 479

Query:   230 LIREKKEAATALYALTSFPENRKRVVSCGAV-PILMRLADAGLER----AVEVLSILVKC 284
              +R KK+AATAL+ L  +  N+ R V  G V P++  L D+  ER    A+ +LS+L   
Sbjct:   480 -VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASN 538

Query:   285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICM 344
             +  +  ++R +    +   + K                     +++    R   V+ + M
Sbjct:   539 QVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPL-M 597

Query:   345 GLLEDDNEKVRRNANNLIQTL 365
              L  D  E+ +R AN+L++ L
Sbjct:   598 ELSRDGTERAKRKANSLLELL 618

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 9.7e-36, Sum P(2) = 9.7e-36
 Identities = 76/254 (29%), Positives = 121/254 (47%)

Query:   112 QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLV 171
             +L  L+K +  +R  +  SGA+  ++  L   +D  T QE A             K  + 
Sbjct:   567 ELRLLAKHNMDNRIVIGNSGAIVLLVELL-YSTDSAT-QENAVTALLNLSINDNNKKAIA 624

Query:   172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLI 231
               GA+  ++  L  GS + +  +A  + SL+V+E NK  IG    AI  LV LL NG   
Sbjct:   625 DAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSG-AIGPLVDLLGNGTP- 682

Query:   232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD--AGL-ERAVEVLSILVKCKEGR 288
             R KK+AATAL+ L+   EN+  +V  GAV  L+ L D  AG+ ++AV VL+ L    EGR
Sbjct:   683 RGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGR 742

Query:   289 EEMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLE 348
               + +  G + + V++++ GS+R  +                C    +EG +   + L +
Sbjct:   743 NAIGQEGG-IPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQ 801

Query:   349 DDNEKVRRNANNLI 362
                 + R  A  L+
Sbjct:   802 SGTPRAREKAQALL 815

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 115/372 (30%), Positives = 187/372 (50%)

Query:     6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
             P DF CP+SLE+M DPVI+++G T++RA IQRW+D G+ TCP T+  L +  +L PN+ L
Sbjct:   242 PVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKL-ENFTLTPNYVL 300

Query:    66 RSLISNF-TRTPLPKP----QLEHANPNPQTLIS--VXXXXXXXXXXXXXXXXQLTKLSK 118
             RSLIS +     + +P         N    ++I   V                ++  LSK
Sbjct:   301 RSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSK 360

Query:   119 RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLVAEGAVSR 178
             R + +R  + E+GA+  ++N L   S+    QE A             K  ++  GAV+ 
Sbjct:   361 RSTDNRILIAEAGAIPVLVNLLT--SEDVATQENAITCVLNLSIYENNKELIMFAGAVTS 418

Query:   179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAA 238
             +V  LR G+ + R  AA  + SL++ + NK  IG    AI ALV LL+NG   R KK+AA
Sbjct:   419 IVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSG-AIPALVDLLENGTP-RGKKDAA 476

Query:   239 TALYALTSFPENRKRVVSCGAVPILMR-LADAGLERAVE----VLSILVKCKEGREEMMR 293
             TAL+ L  +  N+ R V  G V  L++ L+D+   R V+    +LS+L   ++ +  +++
Sbjct:   477 TALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVK 536

Query:   294 VSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLEDDNEK 353
              +  +   + +L+T  +R  +              E      + G +   M L ++  E+
Sbjct:   537 AN-TLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTER 595

Query:   354 VRRNANNLIQTL 365
              +R A +L++ L
Sbjct:   596 GKRKAISLLELL 607

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
 Identities = 70/254 (27%), Positives = 121/254 (47%)

Query:   112 QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAXXXXXXXXXXXXXKVGLV 171
             ++  L+     +R  +   GA++ +L+ L  +S+    QE A             K  +V
Sbjct:   495 EIRHLTINSIENRVHIGRCGAITPLLSLL--YSEEKLTQEHAVTALLNLSISELNKAMIV 552

Query:   172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLI 231
               GA+  +V  L  G+   +  +A  + SL+V++VN+  IG    AI ALV+LL  G   
Sbjct:   553 EVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTF- 611

Query:   232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLE---RAVEVLSILVKCKEGR 288
             R KK+AA+AL+ L+   +N+ R+V   AV  L+ L D  LE   +AV +L+ L    EGR
Sbjct:   612 RGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAVALLANLSAVGEGR 671

Query:   289 EEMMRVSGCVGVFVKMLKTGSSRAVQXXXXXXXXXXXXXQEICGDSRKEGVLDICMGLLE 348
             + ++R  G + + V+ +  GS R  +              + C    +EG +   + L +
Sbjct:   672 QAIVREGG-IPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQ 730

Query:   349 DDNEKVRRNANNLI 362
                ++ +  A  L+
Sbjct:   731 SGTQRAKEKAQQLL 744

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81902	PUB8_ARATH	6, ., 3, ., 2, ., -	0.6470	0.9838	0.9786	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
smart00504	63	smart00504, Ubox, Modified RING finger domain	4e-26
pfam04564	73	pfam04564, U-box, U-box domain	4e-22
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	6e-09
smart00184	40	smart00184, RING, Ring finger	3e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-05
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	2e-04
COG5113	929	COG5113, UFD2, Ubiquitin fusion degradation protei	2e-04
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-04
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.001

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 99.2 bits (248), Expect = 4e-26
 Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 8  DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS 67
          +F CPISLE+M DPVIL SG T++R++I++WL S H T P+T  PL     LIPN AL+S
Sbjct: 1  EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKS 58

Query: 68 LISNF 72
           I  +
Sbjct: 59 AIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 6  PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
          PD+F  PI+LE+M DPVIL SG T+DR++I+R L S   T P T+ PL     LIPN  L
Sbjct: 2  PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLT-HDQLIPNLEL 60

Query: 66 RSLISNF 72
          +  I  +
Sbjct: 61 KEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 2  ATQFPDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWL-DSGHRTCPI 48
          A  F   F CPIS E+M+D    PV+L  GH + R ++++   + G   CP 
Sbjct: 4  AHHFHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 11 CPISLEIMS-DPVILSSGHTFDRASIQRWLDSGHRTCPI 48
          CPI LE    DPVIL  GHTF R+ I++WL+SG+ TCPI
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPI 39

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 131 GAVSAVLNCL-KIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEG----AVSRVVAALRF 185
           G +++V  C+ ++ +   + QEK L+    L L    +    A G    A+  +V+ LR 
Sbjct: 10  GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS 69

Query: 186 GSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243
           G+   +  AA ++  L   E    K  +G     I  L+SLL++G     +K AA A+YA
Sbjct: 70  GTLGAKVNAAAVLGVLCKEEDLRVKVLLGG---CIPPLLSLLKSGS-AEAQKAAAEAIYA 125

Query: 244 LTSFPEN----RKRVVSCGAVPILMRLADAGL--ERAVE-----VLSILVKCKEGREEMM 292
           ++S   +     K   + G VP L      G   ++ VE      L  L    +G     
Sbjct: 126 VSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSAT 185

Query: 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNE 352
             +G V + VK+L +G+S A   +   L+ L    +         G +   + LL   NE
Sbjct: 186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE 245

Query: 353 -KVRRNANNLIQTLSGN 368
             VR  A   ++ LS  
Sbjct: 246 VSVRAEAAGALEALSSQ 262

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 254 VVSCGAVPILMRLADAGLER----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS 309
           V+  G +P L+ L  +  E     A   LS L        + +  +G +   V++LK+  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366
              V+ +L+ L  L    ++      + G +   + LL+  NE +++NA   +  L+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 215 PYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG--- 270
              + ALVSLL +      ++EAA AL  L++   +N + VV  G +P L++L  +    
Sbjct: 6   AGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 271 -LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
            ++ A+  L  L    E  + ++  +G V   V +L + +    + +   LS L 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 90  QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTL 149
             L+S+L+S    +  + E+   L+ LS  ++ + + + E+G + A++  LK   +   +
Sbjct: 10  PALVSLLSSSDENV--QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE--EV 65

Query: 150 QEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLA 202
            + AL  L NL+   +DNK+ ++  G V ++V  L   + D +  A   +++LA
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 8  DFKCPISLEIMSDPVILSS-GHTFDRASIQRWLD-SGHRTCPI 48
             CP++L+   +PV      H F++ +I   L  +    CP+
Sbjct: 11 SLTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 6   PDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
           PD+F  P+   IM DPV L +S  T DR++I+  L S   T P  ++PL     + PN  
Sbjct: 852 PDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLD-DVTPNAE 909

Query: 65  LRSLISNF 72
           LR  I+ F
Sbjct: 910 LREKINRF 917

Length = 929

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 10 KCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPI 48
          +CPI LE   +PV+L   GH F R+ I +WL SG  TCP+
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40

Length = 45

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 20/227 (8%)

Query: 109  SLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168
            +L  LT+L++    ++  + E+GA+ A+   L +     T +E A  LL  L    + + 
Sbjct: 1168 ALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDST-EEAASELLRILFSSPELRR 1226

Query: 169  GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ-- 226
               A GAV+++VA LR GS   R  AA  +  L   E     I D   A  A+  L++  
Sbjct: 1227 HESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE----HIRDSELARQAVQPLVEML 1282

Query: 227  NGKLIREKKEAATALYALTSFPENRKRV-----VSCGAVPILMRL--ADAGLE---RAVE 276
            N     E+  A  AL  L+S   N  +      V   A+  L ++  +D+ LE    A E
Sbjct: 1283 NTGSESEQHAAIGALIKLSS--GNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAE 1340

Query: 277  VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323
            +  +L      R      + C+   + +L + SS A +  +  L  L
Sbjct: 1341 LCRVLFTNTRIRSTPA-AARCIEPLISLLVSESSTAQEAGVCALDRL 1386

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 126 KLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALR 184
            + ++G + A+++ L   S    +Q +A   L NLS  +++ +  V E G +  +V  L+
Sbjct: 2   AVIQAGGLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 185 FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ 226
               +    A   + +LA    +   I      +  LV+LL 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11 CPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPI 48
          CPI LE   DPV +   GH F    I  WL+SG+ TCP+
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPL 39

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.9
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.86
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.85
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.71
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.69
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.68
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.62
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.61
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.61
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.54
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.5
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.47
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.37
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.34
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.32
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.32
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.3
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.28
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.28
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.27
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.18
PRK09687	280	putative lyase; Provisional	99.17
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.16
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.09
PRK09687	280	putative lyase; Provisional	99.07
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.07
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.07
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.01
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.98
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.97
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.96
PHA02929	238	N1R/p28-like protein; Provisional	98.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.92
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.92
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.91
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.87
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.87
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.87
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.87
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.85
PHA02926	242	zinc finger-like protein; Provisional	98.81
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.8
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.77
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.75
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.73
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.73
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.73
PF14634	44	zf-RING_5: zinc-RING finger domain	98.69
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.63
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.61
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.6
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.6
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.57
PF05536	543	Neurochondrin: Neurochondrin	98.52
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.5
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.49
KOG2660	331	consensus Locus-specific chromosome binding protei	98.48
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.47
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.44
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.41
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.4
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.38
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.37
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.36
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.33
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.31
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.31
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.28
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.28
KOG0297	391	consensus TNF receptor-associated factor [Signal t	98.25
PTZ00429	746	beta-adaptin; Provisional	98.23
PF05536	543	Neurochondrin: Neurochondrin	98.21
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.16
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.14
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.13
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.1
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.09
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.06
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.05
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.03
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.02
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.0
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.98
PTZ00429	746	beta-adaptin; Provisional	97.97
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.97
COG5369	743	Uncharacterized conserved protein [Function unknow	97.96
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
COG5152	259	Uncharacterized conserved protein, contains RING a	97.95
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.94
TIGR02270	410	conserved hypothetical protein. Members are found	97.91
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.87
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.82
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.81
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.76
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.73
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.73
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.6
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.56
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.52
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.51
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	97.51
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.5
TIGR02270	410	conserved hypothetical protein. Members are found	97.49
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.48
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.48
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.47
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.46
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.44
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.42
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.41
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.38
COG5369	743	Uncharacterized conserved protein [Function unknow	97.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.31
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.29
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.28
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.27
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.26
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.26
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.25
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.24
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.23
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	97.23
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.22
KOG3036	293	consensus Protein involved in cell differentiation	97.18
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.14
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.14
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.13
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.11
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.09
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.09
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.08
PF07814	361	WAPL: Wings apart-like protein regulation of heter	97.06
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.02
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.99
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.95
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.93
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.91
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.9
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.85
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.85
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.84
KOG3036	293	consensus Protein involved in cell differentiation	96.84
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.74
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.73
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.72
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.68
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.67
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.67
PF04641	260	Rtf2: Rtf2 RING-finger	96.64
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.57
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.54
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.51
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.51
KOG0289	506	consensus mRNA splicing factor [General function p	96.49
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.49
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.43
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.41
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.39
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.36
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.35
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.35
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.32
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.31
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.31
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.25
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.24
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.24
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.21
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	96.14
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.13
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.11
PF05004	309	IFRD: Interferon-related developmental regulator (	96.05
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.04
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.01
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.0
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.99
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.92
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.89
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	95.83
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.79
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.74
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.71
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	95.7
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	95.66
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	95.64
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	95.63
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.61
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.53
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.49
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.45
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.45
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.33
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	95.3
PF05004	309	IFRD: Interferon-related developmental regulator (	95.29
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.24
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.18
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.18
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.14
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.09
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.05
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.03
KOG4653	982	consensus Uncharacterized conserved protein [Funct	94.98
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.91
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.91
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.91
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.78
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	94.74
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.64
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.63
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.63
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	94.62
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.59
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.43
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.34
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.18
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	94.08
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.02
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.97
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.95
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.92
KOG3002	299	consensus Zn finger protein [General function pred	93.86
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.82
KOG3113	293	consensus Uncharacterized conserved protein [Funct	93.75
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.74
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	93.69
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	93.63
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	93.58
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.53
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.41
KOG0567	289	consensus HEAT repeat-containing protein [General	93.3
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.3
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.2
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.14
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.06
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.02
KOG2979	262	consensus Protein involved in DNA repair [General	93.02
KOG2025	892	consensus Chromosome condensation complex Condensi	92.92
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	92.9
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	92.84
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.83
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.75
KOG2025	892	consensus Chromosome condensation complex Condensi	92.45
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	92.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.91
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.9
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	91.88
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	91.64
COG5109	396	Uncharacterized conserved protein, contains RING Z	91.49
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	91.42
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.17
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.15
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	91.09
KOG4653	982	consensus Uncharacterized conserved protein [Funct	90.98
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	90.6
PHA03096	284	p28-like protein; Provisional	90.51
PHA02862	156	5L protein; Provisional	90.45
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.07
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.97
KOG0567	289	consensus HEAT repeat-containing protein [General	89.84
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	89.7
KOG1940	276	consensus Zn-finger protein [General function pred	89.69
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.26
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.15
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.03
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	88.98
KOG4739	233	consensus Uncharacterized protein involved in syna	88.83
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	88.82
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	88.42
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	88.42
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	88.39
COG5656	970	SXM1 Importin, protein involved in nuclear import	88.31
KOG2956	516	consensus CLIP-associating protein [General functi	88.27
KOG0298	1394	consensus DEAD box-containing helicase-like transc	88.13
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	88.09
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	87.9
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.88
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	87.71
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	87.63
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.51
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.35
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	87.0
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.72
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	86.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.6
KOG1243	690	consensus Protein kinase [General function predict	86.15
PLN02189	1040	cellulose synthase	86.15
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	85.93
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	85.63
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	85.62
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.5
PLN02436	1094	cellulose synthase A	85.39
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.19
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	85.17
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	85.0
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	84.83
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	84.21
PLN02195	977	cellulose synthase A	83.76
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	83.69
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	83.57
KOG3899	381	consensus Uncharacterized conserved protein [Funct	83.44
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	83.42
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.33
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	83.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	82.83
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.75
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	82.75
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	82.73
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	82.34
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	82.18
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.15
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.11
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	81.76
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	81.55
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	81.28
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	81.25
PRK14707	2710	hypothetical protein; Provisional	81.18
KOG2956	516	consensus CLIP-associating protein [General functi	81.18
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	81.11
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	80.94
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	80.59
PLN02400	1085	cellulose synthase	80.44

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=7.5e-29  Score=258.57  Aligned_cols=276  Identities=20%  Similarity=0.242  Sum_probs=243.3

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      ..+++.|.+++++++.+..|+..|+.+++.++++|..+.+ .|+||.|+.+|.  +++..+++.++.+|.+++.+++++.
T Consensus        16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--sg~~~vk~nAaaaL~nLS~~e~nk~   93 (2102)
T PLN03200         16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--SGTLGAKVNAAAVLGVLCKEEDLRV   93 (2102)
T ss_pred             HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCHHHHH
Confidence            5688999988667899999999999999999999999997 799999999999  7889999999999999999999999


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc---ccchhhhccccchHHHHHHHhhcCCc--hHHHHHHHHHHHh
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV---EVNKATIGDYPYAINALVSLLQNGKL--IREKKEAATALYA  243 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~  243 (372)
                      .|+..|+|++|+.+|++++.+.|+.|+++|++|+.+   ++++..|+...|+||.|+.++++++.  ..++..|+.+|+|
T Consensus        94 ~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n  173 (2102)
T PLN03200         94 KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN  173 (2102)
T ss_pred             HHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987   34555554337999999999998642  2356788899999


Q ss_pred             hcCCCchhH-HHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhH
Q 017402          244 LTSFPENRK-RVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCS  316 (372)
Q Consensus       244 L~~~~~~~~-~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a  316 (372)
                      ||.+++++. .++++|+|+.|+.+|+++    ++.++.+|.+++.. ++++..+++ .|+++.|++++.++ ++.+++.|
T Consensus       174 Ls~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~A  252 (2102)
T PLN03200        174 LCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEA  252 (2102)
T ss_pred             HhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHH
Confidence            999998875 568999999999999655    77899989888865 678888888 89999999999764 45889999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc---------HHHHHHHHHHHHHHhcC
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN---------EKVRRNANNLIQTLSGN  368 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~---------~~v~~~a~~~L~~l~~~  368 (372)
                      +++|.+||.++++++..+++.|+++.|++++.+.+         ...+++|.|+|.++-..
T Consensus       253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998644         34599999999997664

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.8e-29  Score=227.30  Aligned_cols=279  Identities=19%  Similarity=0.225  Sum_probs=249.3

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~  165 (372)
                      ...|.++..|..+ .++..+.+|+++|.|++.++.+..+.++++|.+|.++.+|.  +.+..+++.|+++|.|++.+ +.
T Consensus       109 G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~  185 (514)
T KOG0166|consen  109 GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPD  185 (514)
T ss_pred             CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChH
Confidence            4558899999865 47899999999999999999999999999999999999999  89999999999999999988 67


Q ss_pred             ccccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      .|..+.+.|++++|+.++...+. ....+++|+|.||+.+......+.....++|.|..++.+.+. ++...|+|+|++|
T Consensus       186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyL  264 (514)
T KOG0166|consen  186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYL  264 (514)
T ss_pred             HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence            78888899999999999987765 788899999999998775444444446899999999999988 9999999999999


Q ss_pred             cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHH
Q 017402          245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLF  318 (372)
Q Consensus       245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~  318 (372)
                      +.. ++..+.+++.|+++.|+++|.+.    .--|+.++.|++.+.+.+.+.+-..|+++.|..++.. ..+.+++.|++
T Consensus       265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW  344 (514)
T KOG0166|consen  265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW  344 (514)
T ss_pred             hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence            975 56778888999999999999654    4469999999999999988877779999999999984 55568899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      ++.||+.++++..+.++++|++|.|+.+++++..++|+.|+|++.++..+.
T Consensus       345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g  395 (514)
T KOG0166|consen  345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG  395 (514)
T ss_pred             HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence            999999999999999999999999999999999999999999999987765

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=4.6e-28  Score=252.75  Aligned_cols=275  Identities=18%  Similarity=0.238  Sum_probs=238.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .|.|+++|.++  +++.|..|++.|++++.++++++..++++|+||.|+++|.  +++..+++.|+++|.|++.++++..
T Consensus       448 Ip~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        448 VQLLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            47799999876  7889999999999999988889999999999999999999  7899999999999999998865555


Q ss_pred             c-ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-------------------------------------hh
Q 017402          169 G-LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-------------------------------------AT  210 (372)
Q Consensus       169 ~-i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-------------------------------------~~  210 (372)
                      . +.++|++++|+++|++++.+.+..|+++|.+++...++.                                     ..
T Consensus       524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~  603 (2102)
T PLN03200        524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE  603 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            4 447899999999999999999999999999996432211                                     11


Q ss_pred             hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-
Q 017402          211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-  284 (372)
Q Consensus       211 i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-  284 (372)
                      .....|+++.|+++++++++ .+++.|+++|.+++.. ++.+..++..|+|++|+.+|.++    +..++++|.|++.+ 
T Consensus       604 g~~~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~  682 (2102)
T PLN03200        604 GSAANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI  682 (2102)
T ss_pred             hhhccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence            11125899999999999988 9999999999999985 46788999999999999999655    67799999999963 


Q ss_pred             -HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          285 -KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       285 -~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                       +..+..++. .|++++|+++++..+..+.+.|+.+|.+++.. ++.+.++.+.|+++.|+++++++++++|+.|+++|.
T Consensus       683 ~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~  760 (2102)
T PLN03200        683 KENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA  760 (2102)
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence             334455666 89999999999999999999999999999988 888899999999999999999999999999999998


Q ss_pred             HHhcCCC
Q 017402          364 TLSGNPS  370 (372)
Q Consensus       364 ~l~~~~~  370 (372)
                      .|-.+..
T Consensus       761 ~L~~~~~  767 (2102)
T PLN03200        761 QLLKHFP  767 (2102)
T ss_pred             HHHhCCC
Confidence            7766543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.9e-28  Score=209.72  Aligned_cols=271  Identities=20%  Similarity=0.235  Sum_probs=245.4

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      .+++. |.+ +.+..+|..+..+|.+++. +.++|+.++.+|++|.|+.+++  +++.++|+.+..+|.|++.+..+|+.
T Consensus       170 ~pltr-Lak-skdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~--s~d~dvqyycttaisnIaVd~~~Rk~  244 (550)
T KOG4224|consen  170 EPLTR-LAK-SKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLK--SGDLDVQYYCTTAISNIAVDRRARKI  244 (550)
T ss_pred             hhhHh-hcc-cchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhc--cCChhHHHHHHHHhhhhhhhHHHHHH
Confidence            44665 433 2478899999999999997 6779999999999999999999  89999999999999999999999999


Q ss_pred             ccccC--ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          170 LVAEG--AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       170 i~~~g--~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      +++.+  .++.|+.++.++++.++-.|.-+|.+++...++...|++ .|.+|.++++++++.- ........+++|++.+
T Consensus       245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~-plilasVaCIrnisih  322 (550)
T KOG4224|consen  245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMG-PLILASVACIRNISIH  322 (550)
T ss_pred             HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcch-hHHHHHHHHHhhcccc
Confidence            99887  999999999999999999999999999999999999999 8999999999988766 6777788899999999


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS  321 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  321 (372)
                      +-|-..|+++|.+.+|+++|+.+     +-+|..+|+||+. .+.++..|.+ .|+++.+.+++.+++-.+++.-..++.
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a  401 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIA  401 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHH
Confidence            99999999999999999999654     4468999999999 5667778888 899999999999999999988888888


Q ss_pred             HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      .++.. +..+..+.+.|+++.|+....+.+.+++-.|+.+|-+|+...
T Consensus       402 ~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  402 QLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            88876 788899999999999999999999999999999999998753

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.6e-28  Score=210.77  Aligned_cols=260  Identities=23%  Similarity=0.325  Sum_probs=237.8

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA  181 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~  181 (372)
                      ..++|..+++.|.+|+..+ ++|..+...|++.++.++-+  +++..+|..+..+|.||....++|..++.+|++|.||.
T Consensus       139 ~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs  215 (550)
T KOG4224|consen  139 GVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS  215 (550)
T ss_pred             CcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh
Confidence            5688999999999999875 59999999999999999666  78899999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccc--hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY--AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA  259 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g--~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~  259 (372)
                      ++++++.+++.+++-++.+++.+...+..+++ .+  .|+.|+.+++++++ .++-.|..+|.||++..+-...++++|.
T Consensus       216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt~Yq~eiv~ag~  293 (550)
T KOG4224|consen  216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDTEYQREIVEAGS  293 (550)
T ss_pred             hhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence            99999999999999999999998888888877 55  99999999999999 9999999999999999999999999999


Q ss_pred             hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCHHHHHHH
Q 017402          260 VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQEICGDS  334 (372)
Q Consensus       260 v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~  334 (372)
                      +|.++++++++    .-..+..+.|++-++-+.--|++ .|.+.+||++|..+ ++.++-+|..+|++++..++.++..+
T Consensus       294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i  372 (550)
T KOG4224|consen  294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI  372 (550)
T ss_pred             chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence            99999999776    34466778999998887777777 89999999999875 55689999999999999889999999


Q ss_pred             HhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          335 RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       335 ~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .+.|.++++.+++.++...+|..-..++..|.-
T Consensus       373 ~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  373 RESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            999999999999999999999888888876653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.95  E-value=1.1e-26  Score=199.13  Aligned_cols=283  Identities=15%  Similarity=0.153  Sum_probs=245.5

Q ss_pred             CCCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402           83 EHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL  162 (372)
Q Consensus        83 ~~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~  162 (372)
                      ......+|.+++++.+. ...-.+.+|+++|.|++.+.....+.++++|.+|.++.+|.  +.+.++++.+.++|.|++.
T Consensus       110 VIdaGvVpRfvefm~~~-q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAG  186 (526)
T COG5064         110 VIDAGVVPRFVEFMDEI-QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAG  186 (526)
T ss_pred             HHhccccHHHHHHHHhc-chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccC
Confidence            34456678999999654 35567889999999999988777778889999999999999  8899999999999999998


Q ss_pred             C-ccccccccccCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402          163 D-DDNKVGLVAEGAVSRVVAALRFGS--PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT  239 (372)
Q Consensus       163 ~-~~~~~~i~~~g~i~~lv~~L~~~~--~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  239 (372)
                      + +..|..+.+.|++++++.+|.+..  .....++.|+|.||+........-.....++|.|.+++.+.+. ++...|+|
T Consensus       187 DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~-evlvDA~W  265 (526)
T COG5064         187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP-EVLVDACW  265 (526)
T ss_pred             CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH-HHHHHHHH
Confidence            8 566778889999999999998764  4778899999999997653222222223689999999999888 99999999


Q ss_pred             HHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHH
Q 017402          240 ALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQ  314 (372)
Q Consensus       240 aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~  314 (372)
                      +|+.|+..+ +....+++.|..+.|+++|.+.    .--++..+.|+....+.+.+++-.-|+++.+-.+|.+..+.++.
T Consensus       266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK  345 (526)
T COG5064         266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK  345 (526)
T ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence            999999866 5667788999999999999665    45588999999999998888777789999999999988889999


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      .|++.+.|+..++.+..+.+++++.+|.|++++.+..-.+|+.|+|++.+.+.+.
T Consensus       346 EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg  400 (526)
T COG5064         346 EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG  400 (526)
T ss_pred             hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999999999998999999999999999999999999999999999999988765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.3e-25  Score=201.99  Aligned_cols=277  Identities=16%  Similarity=0.156  Sum_probs=237.6

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCCc
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLDD  164 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~~  164 (372)
                      ...+|.++.+|.++  +.+++.+|+++|.|++.+++..|..+.+.|+++.|+.++.  ..+ ......+.++|.||+.+.
T Consensus       151 agavp~fi~Ll~s~--~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk  226 (514)
T KOG0166|consen  151 AGAVPIFIQLLSSP--SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGK  226 (514)
T ss_pred             CCchHHHHHHhcCC--cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCC
Confidence            44568899999887  8899999999999999999999999999999999999998  333 368899999999999997


Q ss_pred             cccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          165 DNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       165 ~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      +....+.. ..++|.|..++.+.|.++...|+|+|.+|+.....+..++-..|+++.|+++|...+. .++..|++++.|
T Consensus       227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGN  305 (514)
T KOG0166|consen  227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGN  305 (514)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccc
Confidence            65554444 6789999999999999999999999999997765555544437999999999999888 899999999999


Q ss_pred             hcCCC-chhHHHHhcCchHHHHHHHh-hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402          244 LTSFP-ENRKRVVSCGAVPILMRLAD-AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       244 L~~~~-~~~~~i~~~g~v~~L~~ll~-~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                      ++..+ .-.+.++..|+++.|..++. +.    ++.|+++++|++.+...+.+.+...|.+|.|+++++++.-+.|..|+
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            98855 46677889999999999996 33    57799999999997776655444489999999999999999999999


Q ss_pred             HHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          318 FTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       318 ~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +++.|++..+ ++.-..+++.|+++.+..+|.-.+.++-..+...|.++..
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~  436 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK  436 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence            9999998764 4666778999999999999977788888888888887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.90  E-value=6.4e-23  Score=176.17  Aligned_cols=278  Identities=14%  Similarity=0.127  Sum_probs=233.1

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      ...+|-++++|.+.  ..+++.+++++|.|++.+++..|+.+.+.|++++++.+|.+...+..+...+.++|.||+.+..
T Consensus       156 ~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn  233 (526)
T COG5064         156 AGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN  233 (526)
T ss_pred             CCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence            34568899999876  7899999999999999999999999999999999999998433345789999999999998843


Q ss_pred             ccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ....-.. ...+|.|.+++.+.|+++..-|+|++.+|+.....+..++-..|..+.|+++|.+++. .++..|++.+.|+
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNI  312 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNI  312 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCe
Confidence            3221111 4578999999999999999999999999998775555544437999999999999887 8999999999999


Q ss_pred             cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      ... +...+.++..|+++.+..+|.++    ++.+++.++|+......+.+.+.+...+|+|+++|....-..+..|+++
T Consensus       313 VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA  392 (526)
T COG5064         313 VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA  392 (526)
T ss_pred             eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            875 45667888999999999999766    6779999999998766665555548899999999998888999999999


Q ss_pred             HHHHhcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          320 LSCLCCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       320 L~~l~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +.|..++   -|+.-..+++.|+++.|..+|.-.+.++-+.+..++++.-
T Consensus       393 isNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL  442 (526)
T COG5064         393 ISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL  442 (526)
T ss_pred             HHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence            9998765   3688888999999999999999877777777788877543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.89  E-value=1e-21  Score=186.34  Aligned_cols=282  Identities=22%  Similarity=0.246  Sum_probs=232.4

Q ss_pred             CCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 017402           84 HANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD  163 (372)
Q Consensus        84 ~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~  163 (372)
                      ...|+.|+.++.|.+.  ++.++.+|...++.+|.++.+.|..+.+.|+|+.|+.+|.  +.+.+++..|+.+|.||.+.
T Consensus       230 w~d~~lpe~i~mL~~q--~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~  305 (717)
T KOG1048|consen  230 WRDPTLPEVISMLMSQ--DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFG  305 (717)
T ss_pred             ccccccHHHHHHHhcc--ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcc
Confidence            3567779999999976  8999999999999999999999999999999999999999  89999999999999999887


Q ss_pred             ---ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC----------
Q 017402          164 ---DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK----------  229 (372)
Q Consensus       164 ---~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~----------  229 (372)
                         ++|+..|.+.++|+.++++|+. .|.++++..+++|+||++.+..|+.|..  .+++.|...+-.+.          
T Consensus       306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccc
Confidence               4588999999999999999987 7999999999999999999888888876  67888877653321          


Q ss_pred             ---chHHHHHHHHHHHhhcC-CCchhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCCHh--------
Q 017402          230 ---LIREKKEAATALYALTS-FPENRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKCKE--------  286 (372)
Q Consensus       230 ---~~~~~~~a~~aL~~L~~-~~~~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~--------  286 (372)
                         ...+..+++++|+|+++ ..+.|+++.+. |.|+.|+..+.+.          .|+|+.+|.||+..-+        
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence               13678899999999998 67899999877 8999999988421          7999999999986221        


Q ss_pred             -------------------------HHHH--------HHh------------ccchHHHHHHHHhc-CChhHHHhHHHHH
Q 017402          287 -------------------------GREE--------MMR------------VSGCVGVFVKMLKT-GSSRAVQCSLFTL  320 (372)
Q Consensus       287 -------------------------~~~~--------i~~------------~~g~i~~L~~ll~~-~~~~~~~~a~~~L  320 (372)
                                               .++.        +-+            +.-+|.....++.. .++...+.++++|
T Consensus       464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL  543 (717)
T KOG1048|consen  464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL  543 (717)
T ss_pred             hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence                                     0000        000            01234444555543 5667789999999


Q ss_pred             HHHhcCCH----HHHHHH-HhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402          321 SCLCCCSQ----EICGDS-RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSM  371 (372)
Q Consensus       321 ~~l~~~~~----~~~~~~-~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  371 (372)
                      .|++....    ..+..+ .++.+++.|+++++++++.|.+.++.+|++|+.+...
T Consensus       544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn  599 (717)
T KOG1048|consen  544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN  599 (717)
T ss_pred             hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence            99987643    555555 7788999999999999999999999999999987654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=1.9e-20  Score=181.74  Aligned_cols=267  Identities=21%  Similarity=0.221  Sum_probs=226.4

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      ++.|+..|+++  +.+...-++..|.+|+.. .+|+..|.+.|+|+.|++++.  +++.+++..++++|.||+.+++.|.
T Consensus       292 V~~Lv~~Ldr~--n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~--s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  292 VSLLVKCLDRE--NEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLP--SENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            35688888765  788999999999999984 569999999999999999999  7889999999999999999999999


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      .|++.|++|.|+.+|.++  ..+..+..+|+++|..++.|..+.. .+++|.++.++.+..+.++...++.++.|||.++
T Consensus       367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~  443 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK  443 (708)
T ss_pred             HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence            999999999999999754  4667799999999999999999988 7999999999877655467778899999999999


Q ss_pred             chhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhc
Q 017402          249 ENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~  325 (372)
                      .+.+.+.+.|+++.|++..-.. ....++++.|++.++ ..+..+.   +.+..|+..+.. .++...-.++++|.|+..
T Consensus       444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~  520 (708)
T PF05804_consen  444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLTI  520 (708)
T ss_pred             HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence            9999999999999999888555 455778999999998 4444443   378888888876 466778899999999987


Q ss_pred             CCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHh
Q 017402          326 CSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLS  366 (372)
Q Consensus       326 ~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~  366 (372)
                      .+.+....+.+.+.+|.|..++..+  .+.+...+..++..+.
T Consensus       521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            7667767777789999999999875  4566666666665544

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.86  E-value=8.4e-20  Score=177.23  Aligned_cols=250  Identities=18%  Similarity=0.174  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF  185 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~  185 (372)
                      ..-++..|.|++. +..+...|.+.|+++.|+++|.  +++.++...++.+|.+|+...+|+..|.+.|+++.|++++.+
T Consensus       266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ld--r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s  342 (708)
T PF05804_consen  266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLD--RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS  342 (708)
T ss_pred             HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence            3456777999998 6679999999999999999999  788999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHH
Q 017402          186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMR  265 (372)
Q Consensus       186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~  265 (372)
                      ++.+.+..++++|.|||.+.+.+..++. .|+||.|+.+|.++   ..+..++.+|++||.++++|..+...+++|.+++
T Consensus       343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~  418 (708)
T PF05804_consen  343 ENEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQ  418 (708)
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence            9999999999999999999999999999 79999999999865   4567799999999999999999999999999999


Q ss_pred             HHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChh
Q 017402          266 LADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVL  340 (372)
Q Consensus       266 ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~  340 (372)
                      ++-++     ...+++++.||+.+..+.+.+++ +|+++.|++...+...   ...+..+.|++.+++..+..+.  +.+
T Consensus       419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i  492 (708)
T PF05804_consen  419 MLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFI  492 (708)
T ss_pred             HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHH
Confidence            88433     34578999999999999999998 7889999888755332   2345799999999656555554  477


Q ss_pred             HHHHHHhhcc-cHHHHHHHHHHHHHHhcC
Q 017402          341 DICMGLLEDD-NEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       341 ~~l~~ll~~~-~~~v~~~a~~~L~~l~~~  368 (372)
                      ..|+.++.++ +++..-.+.++|.+|...
T Consensus       493 ~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  493 GDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            8888888764 788899999999998743

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=4.1e-19  Score=152.65  Aligned_cols=276  Identities=18%  Similarity=0.234  Sum_probs=234.0

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc--
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV--  168 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~--  168 (372)
                      -++.+|....++.++-.-.++.++.-|..++.||+.|.+.++.+.+...|..+ +...+...+.++++-|..+++.|.  
T Consensus       149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~-gk~~~VRel~~a~r~l~~dDDiRV~f  227 (461)
T KOG4199|consen  149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE-GKTRTVRELYDAIRALLTDDDIRVVF  227 (461)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc-CccHHHHHHHHHHHHhcCCCceeeec
Confidence            36788888878888888899999999999999999999999999999888743 444688889999999998887764  


Q ss_pred             --------cccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH---HHHH
Q 017402          169 --------GLVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR---EKKE  236 (372)
Q Consensus       169 --------~i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~---~~~~  236 (372)
                              .|.+.|++..|++.+.-+ ++++...++.+|..|+..++.+..|.+ .|++..|++++.+.++..   ..+.
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~  306 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKT  306 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHH
Confidence                    556678899999999874 789999999999999999999999999 799999999999865533   5578


Q ss_pred             HHHHHHhhcCCCchhHHHHhcCchHHHHHHH----hhh--HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-
Q 017402          237 AATALYALTSFPENRKRVVSCGAVPILMRLA----DAG--LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-  308 (372)
Q Consensus       237 a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll----~~~--~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-  308 (372)
                      ++..|+.|+.+++++..|++.|+.+.++.++    +++  .+.++.+++-||-- ++....+++ .|+-...++.|+.. 
T Consensus       307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP  385 (461)
T KOG4199|consen  307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHP  385 (461)
T ss_pred             HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCc
Confidence            8999999999999999999999999999888    223  67788888888874 555566666 78888889999774 


Q ss_pred             -ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402          309 -SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS  370 (372)
Q Consensus       309 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  370 (372)
                       ...++++|+.++.|+..++.+++..++..| ++.|+......++..+..|..+|+-|-.+.+
T Consensus       386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~  447 (461)
T KOG4199|consen  386 VAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVY  447 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence             346789999999999999999999999886 6777788888899999999999998766543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=3e-17  Score=141.26  Aligned_cols=263  Identities=18%  Similarity=0.224  Sum_probs=225.1

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccccccccCChHHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKVGLVAEGAVSRV  179 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~l  179 (372)
                      .++....+++.+|..+....|+    +.++.+...++++|....++.++-...+..+.. ...++.+|..+++.++++.+
T Consensus       119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li  194 (461)
T KOG4199|consen  119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI  194 (461)
T ss_pred             CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence            4667788999999998876554    467788999999998555677888888888866 44669999999999999999


Q ss_pred             HHHHhc-CChHHHHHHHHHHHHhcccccch----------hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          180 VAALRF-GSPDCRAIAATIITSLAVVEVNK----------ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       180 v~~L~~-~~~~~~~~a~~~L~~ls~~~~~~----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      ...|.. +...+...+++++..|..+++.|          ..|.. .|++..|++.++-..++.+...+..+|..|+..+
T Consensus       195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~  273 (461)
T KOG4199|consen  195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVRD  273 (461)
T ss_pred             HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence            988865 45568888999999998887644          34445 4789999999998876789999999999999999


Q ss_pred             chhHHHHhcCchHHHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc--CChhHHHhHHH
Q 017402          249 ENRKRVVSCGAVPILMRLADAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT--GSSRAVQCSLF  318 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~--~~~~~~~~a~~  318 (372)
                      +.+..+.+.|+++.|+++++++        ...++..|+.|+..++.+..|++ .|+.+.++.++.+  .+|.+.+.++.
T Consensus       274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999999653        35689999999999999999999 8999999998854  68899999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhcCC
Q 017402          319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~  369 (372)
                      ++.-+|..+|+....+++.|+-...++.++..  ...++++|+++++++..+.
T Consensus       353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs  405 (461)
T KOG4199|consen  353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS  405 (461)
T ss_pred             HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999864  6789999999999986554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.79  E-value=4.5e-18  Score=168.52  Aligned_cols=262  Identities=24%  Similarity=0.316  Sum_probs=219.6

Q ss_pred             HHHH-HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----------CCChhHHHHHHHHHhcCCCCcc-cccccc
Q 017402          104 ESKL-ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH----------SDGFTLQEKALSLLLNLSLDDD-NKVGLV  171 (372)
Q Consensus       104 ~~~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~  171 (372)
                      +-++ .|+..|.+++. ++++|..|.+.|++..+-++|.-.          .....++..+..+|.||.+++. |+..+.
T Consensus       312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3455 77888888887 788999999999999999988521          1234689999999999999954 566666


Q ss_pred             c-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cc-hhhhccccchHHHHHHH-hhcCCchHHHHHHHHHHHhhcCC
Q 017402          172 A-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VN-KATIGDYPYAINALVSL-LQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       172 ~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~-~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      . .|++..+|..|.+...++...-+++|.||+=.. .+ +..+.+ .|-+..|+.. ++...+ ..++..+.|||||+.+
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKE-STLKAVLSALWNLSAH  468 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhc
Confidence            5 799999999999999999999999999998543 33 444555 7888888765 445555 7899999999999985


Q ss_pred             -CchhHHHHhc-CchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHH
Q 017402          248 -PENRKRVVSC-GAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAV  313 (372)
Q Consensus       248 -~~~~~~i~~~-g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~  313 (372)
                       .+|+..|..- |++..|+.+|.-.        .|.+-.||.|++.    ++..|+.+.. ..++..|+..|++.+-.+-
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiV  547 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIV  547 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEe
Confidence             6899999977 9999999999321        6777788888766    5666777777 6799999999999998999


Q ss_pred             HhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          314 QCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       314 ~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      .+++++||||...+++.++.+|+.|+++.|..|+.+-+..+-+-++.+|++|-.++
T Consensus       548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999987766

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.71  E-value=1.5e-16  Score=158.01  Aligned_cols=277  Identities=19%  Similarity=0.219  Sum_probs=221.0

Q ss_pred             hhHHHHhhccCC-ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH----------hhcC-----CChh-HHHH
Q 017402           90 QTLISVLTSKSS-PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL----------KIHS-----DGFT-LQEK  152 (372)
Q Consensus        90 ~~li~~L~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----------~~~~-----~~~~-~~~~  152 (372)
                      |-|+++|.-... +.+.|.+|-.+|.|+....++.+..=.+..+++.|-++.          ....     ...+ -...
T Consensus       238 pLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca  317 (2195)
T KOG2122|consen  238 PLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA  317 (2195)
T ss_pred             HHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence            447777765432 567899999999999977665555444444444443222          2111     1122 3458


Q ss_pred             HHHHHhcCCCCccccccccccCChHHHHHHHhc-----C-------ChHHHHHHHHHHHHhcccc-cchhhhccccchHH
Q 017402          153 ALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-----G-------SPDCRAIAATIITSLAVVE-VNKATIGDYPYAIN  219 (372)
Q Consensus       153 a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-----~-------~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~  219 (372)
                      |+.+|..+++++++|..+-+.|+++++.++|.-     +       ...+|.++..+|.||.+.+ .||..+....|+++
T Consensus       318 A~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMe  397 (2195)
T KOG2122|consen  318 ALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFME  397 (2195)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHH
Confidence            999999999999999999999999999998842     1       4678999999999999988 68888887789999


Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHHHH-hh----hHHHHHHHHHHHhC-CHhHHHHH
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPE--NRKRVVSCGAVPILMRLA-DA----GLERAVEVLSILVK-CKEGREEM  291 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~ll-~~----~~e~a~~~L~~L~~-~~~~~~~i  291 (372)
                      .+|.-|.+..+ ++..-.+.+|+||++..+  .+..+-+.|-|..|+... ..    .....+.+||||+. +.+++..|
T Consensus       398 avVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i  476 (2195)
T KOG2122|consen  398 AVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI  476 (2195)
T ss_pred             HHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence            99999999887 889999999999999654  445555779999988766 21    25678999999998 57889999


Q ss_pred             HhccchHHHHHHHHhcC----ChhHHHhHHHHHHHHhcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          292 MRVSGCVGVFVKMLKTG----SSRAVQCSLFTLSCLCCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       292 ~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                      +...|++..||.+|...    .-.+.+.|-++|.|++.+   .+++|+.+++.+++..|+..|++.+-.+-.++++.|.+
T Consensus       477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN  556 (2195)
T KOG2122|consen  477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN  556 (2195)
T ss_pred             hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence            99999999999999764    335678999999998765   46899999999999999999999999999999999998


Q ss_pred             Hhc
Q 017402          365 LSG  367 (372)
Q Consensus       365 l~~  367 (372)
                      |+-
T Consensus       557 LSA  559 (2195)
T KOG2122|consen  557 LSA  559 (2195)
T ss_pred             hhc
Confidence            864

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.70  E-value=5.4e-18  Score=117.93  Aligned_cols=71  Identities=49%  Similarity=0.938  Sum_probs=61.2

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      +|++|.||||+++|.|||++++||+|++.||++|+..+..+||.|+++++ ..++.+|..++..|+.|+..+
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~~~~   71 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEWCAEN   71 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHHHHHC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999999987889999999999 889999999999999998764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.69  E-value=3.2e-15  Score=129.41  Aligned_cols=225  Identities=17%  Similarity=0.154  Sum_probs=186.2

Q ss_pred             HhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402          127 LTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV  206 (372)
Q Consensus       127 i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~  206 (372)
                      +.+.+.++.|+.+|+. +.++.+++.++.++.+.+..+.++..+.+.|+++.+..+|.++++.++..|.++|.|++.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            3567788999999985 368999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402          207 NKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL  281 (372)
Q Consensus       207 ~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L  281 (372)
                      ++..|..   .|+.+++.+.+. -+..++..++++|.||+..++....+..  .++.++.+|.+|    +..++.+|.||
T Consensus        87 n~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9998744   577777766554 2338899999999999988888777654  799999999766    67899999999


Q ss_pred             hCCHhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCH--------------HHHHHHHhcC-hhHHHHH
Q 017402          282 VKCKEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQ--------------EICGDSRKEG-VLDICMG  345 (372)
Q Consensus       282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~g-~~~~l~~  345 (372)
                      +.++.....++. .++...++.++... +..+...++..+.+|..+-.              ..-..+.+.+ ..+.|..
T Consensus       162 S~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  162 SENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             ccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            999999999998 67999999999774 67788999999999965411              1112233344 6777888


Q ss_pred             HhhcccHHHHHHH
Q 017402          346 LLEDDNEKVRRNA  358 (372)
Q Consensus       346 ll~~~~~~v~~~a  358 (372)
                      +..+.+++||++.
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            8888888888763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.68  E-value=4e-15  Score=128.86  Aligned_cols=189  Identities=20%  Similarity=0.253  Sum_probs=163.2

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+.++.+|+.. .++..+..++.++.+.+. .+.++..+.+.|+++.+..+|.  +.++.+++.|+.+|.|++.+.+++.
T Consensus        14 l~~Ll~lL~~t-~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~en~~   89 (254)
T PF04826_consen   14 LQKLLCLLEST-EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLN--DPNPSVREKALNALNNLSVNDENQE   89 (254)
T ss_pred             HHHHHHHHhcC-CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCChhhHH
Confidence            45688888764 689999999999999887 5679999999999999999999  8899999999999999999999988


Q ss_pred             cccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          169 GLVAEGAVSRVVAALRFG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .|.  ..++.+++.+.+.  +.+++..+.++|.+|+..+++...+.   +.++.++.+|.+++. .++..++++|.|||.
T Consensus        90 ~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~-~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   90 QIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSE-KTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCCh-HHHHHHHHHHHHhcc
Confidence            764  3688888876553  78899999999999998888877764   479999999999988 999999999999999


Q ss_pred             CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhH
Q 017402          247 FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEG  287 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~  287 (372)
                      ++.....++.++++..++.+++..     ...++.+..|+..+-..
T Consensus       164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            999999999999999999999654     34577777888765433

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.62  E-value=2.2e-13  Score=130.89  Aligned_cols=268  Identities=15%  Similarity=0.188  Sum_probs=216.7

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +.+...|.++  ++.+|.-+++.|.+++.++....+.+.+.+.++.++..|.  +.+.++...|+.+|.+++.++.....
T Consensus        80 ~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~~~  155 (503)
T PF10508_consen   80 PFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR--DPDLSVAKAAIKALKKLASHPEGLEQ  155 (503)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhHHH
Confidence            3466667765  7899999999999999877766777888999999999999  89999999999999999998888778


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      +...+.+..|..++...+..+|.....++.+++...+ ....+.. .|+++.+++.+++++. -++.+|+..|..|+..+
T Consensus       156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDi-Lvqlnalell~~La~~~  233 (503)
T PF10508_consen  156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDI-LVQLNALELLSELAETP  233 (503)
T ss_pred             HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcCh
Confidence            8888889999999988888999999999999987764 4444555 7999999999999554 88999999999999999


Q ss_pred             chhHHHHhcCchHHHHHHHhhh----------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402          249 ENRKRVVSCGAVPILMRLADAG----------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF  318 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~  318 (372)
                      .+...+.+.|+++.|..++...          ....+...++++.. .....+......+..|.+++.+.++..+..|..
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d  312 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFD  312 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            9999999999999999999433          12234556666664 222222222445667777777889999999999


Q ss_pred             HHHHHhcCCHHHHHHH-HhcC-----hhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          319 TLSCLCCCSQEICGDS-RKEG-----VLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       319 ~L~~l~~~~~~~~~~~-~~~g-----~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ++..++.. .+.+..+ ...|     ++..+.....++..++|..+..+|..+
T Consensus       313 tlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  313 TLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI  364 (503)
T ss_pred             HHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            99999976 7777766 4443     566666666778889999999999877

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.61  E-value=9.1e-14  Score=132.75  Aligned_cols=277  Identities=17%  Similarity=0.147  Sum_probs=213.9

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChH--HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc--
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA--SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD--  164 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~--  164 (372)
                      .+.++.+|.+.  ..+++.+|..+|+||..++..  |+-.|.+.|+|+.++++|+. ..|.++++....+|.||+..|  
T Consensus       277 I~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~-t~D~ev~e~iTg~LWNLSS~D~l  353 (717)
T KOG1048|consen  277 IPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRH-TQDDEVRELITGILWNLSSNDAL  353 (717)
T ss_pred             HHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHh-hcchHHHHHHHHHHhcccchhHH
Confidence            36799999887  889999999999999987665  99999999999999999995 367888888888888887542  


Q ss_pred             -----------------------------------------------------cccccccc-cCChHHHHHHHhc-----
Q 017402          165 -----------------------------------------------------DNKVGLVA-EGAVSRVVAALRF-----  185 (372)
Q Consensus       165 -----------------------------------------------------~~~~~i~~-~g~i~~lv~~L~~-----  185 (372)
                                                                           +.++.+.+ .|.|+.|+..+.+     
T Consensus       354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~  433 (717)
T KOG1048|consen  354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS  433 (717)
T ss_pred             HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence                                                                 22345555 6889999988863     


Q ss_pred             -CChHHHHHHHHHHHHhccccc--------------------------------chhh---------hcc----------
Q 017402          186 -GSPDCRAIAATIITSLAVVEV--------------------------------NKAT---------IGD----------  213 (372)
Q Consensus       186 -~~~~~~~~a~~~L~~ls~~~~--------------------------------~~~~---------i~~----------  213 (372)
                       -|....+++.-+|.||+---+                                -+.+         +-+          
T Consensus       434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~  513 (717)
T KOG1048|consen  434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW  513 (717)
T ss_pred             cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence             366777899999999873211                                0000         000          


Q ss_pred             --ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-----hhHHH-HhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402          214 --YPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-----NRKRV-VSCGAVPILMRLADAG----LERAVEVLSIL  281 (372)
Q Consensus       214 --~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-----~~~~i-~~~g~v~~L~~ll~~~----~e~a~~~L~~L  281 (372)
                        ...+|..=..++.......+.+.++++|-||+...-     .+..+ .+..+.++|+++|+.+    ...+..+|.||
T Consensus       514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl  593 (717)
T KOG1048|consen  514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL  593 (717)
T ss_pred             eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence              012333434444433333899999999999986331     44555 5778999999999655    67889999999


Q ss_pred             hCCHhHHHHHHhccchHHHHHHHHhcCC------hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHH
Q 017402          282 VKCKEGREEMMRVSGCVGVFVKMLKTGS------SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKV  354 (372)
Q Consensus       282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v  354 (372)
                      +.+..++..|..  ++++.|++.|....      ++.-..++.+|+++...+..+.+.+.+.++++.|+.+..+. ++++
T Consensus       594 s~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~  671 (717)
T KOG1048|consen  594 SRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE  671 (717)
T ss_pred             ccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence            999999998885  68999999996532      46667899999999988899999999999999999999975 6799


Q ss_pred             HHHHHHHHHHHhcCCC
Q 017402          355 RRNANNLIQTLSGNPS  370 (372)
Q Consensus       355 ~~~a~~~L~~l~~~~~  370 (372)
                      -++|..+|..|..++.
T Consensus       672 ~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  672 FKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988876554

>smart00504 Ubox Modified RING finger domain

Probab=99.61  E-value=6.9e-16  Score=104.99  Aligned_cols=63  Identities=56%  Similarity=0.985  Sum_probs=59.0

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF   72 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~   72 (372)
                      +|.||||+++|.+||+++|||+||+.||.+|+.. ..+||.|+++++ ..++.+|..+++.++.|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHhC
Confidence            5789999999999999999999999999999987 678999999998 88999999999999876

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.54  E-value=8.7e-13  Score=117.50  Aligned_cols=264  Identities=13%  Similarity=0.109  Sum_probs=212.2

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh-cCC----ChhHHHHHHHHHhcCCCC-ccccccccccCC
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI-HSD----GFTLQEKALSLLLNLSLD-DDNKVGLVAEGA  175 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~----~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~  175 (372)
                      +.++-.+..++|.|.|.++.++|..+.+.||-..++++|+. ++.    +.+....+...|.|...+ ++.+..+.+.|+
T Consensus       100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gV  179 (604)
T KOG4500|consen  100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGV  179 (604)
T ss_pred             cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhccc
Confidence            67888999999999999999999999999999999999974 112    236778888899996666 777889999999


Q ss_pred             hHHHHHHHhc--CChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402          176 VSRVVAALRF--GSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK  252 (372)
Q Consensus       176 i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  252 (372)
                      ++.|...+.-  ++....+......++|.+.. ++-............|+.++.+...++..+.....|...+.++..+-
T Consensus       180 l~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl  259 (604)
T KOG4500|consen  180 LNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL  259 (604)
T ss_pred             HHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee
Confidence            9999988854  45666676777777776544 33333333368888999999876555888899999999999999999


Q ss_pred             HHHhcCchHHHHHHHhh-h----HH-------HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          253 RVVSCGAVPILMRLADA-G----LE-------RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       253 ~i~~~g~v~~L~~ll~~-~----~e-------~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      .+++.|.+..++++++. .    .+       .+.....-|..+++..+.+...+..+..+++-+.+.+......+.-++
T Consensus       260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai  339 (604)
T KOG4500|consen  260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI  339 (604)
T ss_pred             ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            99999999999999943 1    22       244445555667777777877555888999999888889999999999


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhh-----cccHHHHHHHHHHHHHHh
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLE-----DDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~-----~~~~~v~~~a~~~L~~l~  366 (372)
                      .|++.. .+.+..+++.|.+..|++++.     +|+.+++.++..+||+|-
T Consensus       340 gNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  340 GNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             Hhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence            999987 888899999999999999884     367888899999999874

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.4e-12  Score=117.75  Aligned_cols=248  Identities=19%  Similarity=0.156  Sum_probs=199.5

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      |+..|..+  +.+...-....|.+|+..++ |+..|.+.|+|+.|++++.  ..+++++...+..|.|++++...+..++
T Consensus       309 LVKaLdr~--n~~Ll~lv~~FLkKLSIf~e-NK~~M~~~~iveKL~klfp--~~h~dL~~~tl~LlfNlSFD~glr~KMv  383 (791)
T KOG1222|consen  309 LVKALDRS--NSSLLTLVIKFLKKLSIFDE-NKIVMEQNGIVEKLLKLFP--IQHPDLRKATLMLLFNLSFDSGLRPKMV  383 (791)
T ss_pred             HHHHHccc--chHHHHHHHHHHHHhhhhcc-chHHHHhccHHHHHHHhcC--CCCHHHHHHHHHHhhhccccccccHHHh
Confidence            45555554  34445556677888888655 9999999999999999999  8999999999999999999999999999


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      +.|.+|.++.+|.+++  -+..|...++.+|.+++.+.++.. ..+|+.+++.+-++...++-......-.|||.+..|.
T Consensus       384 ~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa  460 (791)
T KOG1222|consen  384 NGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA  460 (791)
T ss_pred             hccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc
Confidence            9999999999996543  334578899999999999999888 7999999999887765244433333445999999999


Q ss_pred             HHHHhcCchHHHHHHH-hhhHHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH
Q 017402          252 KRVVSCGAVPILMRLA-DAGLERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ  328 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll-~~~~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~  328 (372)
                      +.+++-.++..|++.. ....-..+.++.|++.++.. +..++.   .+..|...++. .++..-..++++|.++...+.
T Consensus       461 QlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid---yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  461 QLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID---YVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             eEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH---HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            9999987888888766 33345678999999998774 445555   57778777765 456667788999999988767


Q ss_pred             HHHHHHHhcChhHHHHHHhhcc
Q 017402          329 EICGDSRKEGVLDICMGLLEDD  350 (372)
Q Consensus       329 ~~~~~~~~~g~~~~l~~ll~~~  350 (372)
                      +-.+.+.+...+|.+-..++.|
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pg  559 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPG  559 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCC
Confidence            7888888899999999988875

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.47  E-value=2e-14  Score=87.73  Aligned_cols=39  Identities=38%  Similarity=0.833  Sum_probs=31.2

Q ss_pred             ccCCcccCCCceecCCchHhhHHHHHHHHhcCC---CCCCCC
Q 017402           11 CPISLEIMSDPVILSSGHTFDRASIQRWLDSGH---RTCPIT   49 (372)
Q Consensus        11 C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~---~~CP~c   49 (372)
                      ||||+++|++||+++|||+||+.||.+||....   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999997532   479987

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.37  E-value=1.3e-10  Score=111.86  Aligned_cols=236  Identities=19%  Similarity=0.167  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL  183 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L  183 (372)
                      +.+.+++..+..-....+ .-    +..-.+.++..|.  +.+.+....++.+|..+.........  ..+..+.|...|
T Consensus        16 ~~~~~~L~~l~~~~~~~~-~l----~~~~~~~lf~~L~--~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL   86 (503)
T PF10508_consen   16 AERLEALPELKTELSSSP-FL----ERLPEPVLFDCLN--TSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGL   86 (503)
T ss_pred             cchHHHHHHHHHHHhhhh-HH----HhchHHHHHHHHh--hcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHh
Confidence            445667777766444332 11    2222233888898  67778888888888887654332222  567889999999


Q ss_pred             hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402          184 RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL  263 (372)
Q Consensus       184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L  263 (372)
                      .++++.+|..+++.|.+++.+.+....+....++++.++.++.+++. .+.+.|..+|.+++.++.+...++..+.++.|
T Consensus        87 ~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L  165 (503)
T PF10508_consen   87 THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASHPEGLEQLFDSNLLSKL  165 (503)
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCCchhHHHHhCcchHHHH
Confidence            99999999999999999987776544444337999999999999988 99999999999999999888888899999999


Q ss_pred             HHHHhh-h---HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402          264 MRLADA-G---LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGV  339 (372)
Q Consensus       264 ~~ll~~-~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  339 (372)
                      ..++.. .   +-++..++.+++...+.....+...|.++.++..+++.+.-++.+|+.+|..++. .+.+.+-+.+.|+
T Consensus       166 ~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi  244 (503)
T PF10508_consen  166 KSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGI  244 (503)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCH
Confidence            999955 2   6678899999988766655555558999999999999888899999999999999 5899999999999


Q ss_pred             hHHHHHHhhcc
Q 017402          340 LDICMGLLEDD  350 (372)
Q Consensus       340 ~~~l~~ll~~~  350 (372)
                      ++.|..++.+.
T Consensus       245 ~~~L~~~l~~~  255 (503)
T PF10508_consen  245 FDKLSNLLQDS  255 (503)
T ss_pred             HHHHHHHHhcc
Confidence            99999999764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=4.3e-12  Score=98.27  Aligned_cols=117  Identities=26%  Similarity=0.291  Sum_probs=104.8

Q ss_pred             HHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402          126 KLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV  204 (372)
Q Consensus       126 ~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~  204 (372)
                      .+++.|+++.++++|.  +.+..++..++.+|.+++.+ ++....+.+.|+++.++.+|.++++.++..++++|.+++..
T Consensus         2 ~~~~~~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            4678999999999999  77899999999999999988 77788888899999999999999999999999999999987


Q ss_pred             cc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          205 EV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       205 ~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .. ....+.. .|+++.|++++.+.+. .+++.++++|.+|+.
T Consensus        80 ~~~~~~~~~~-~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLE-AGGVPKLVNLLDSSNE-DIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHH-CCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence            74 4455555 6999999999998877 999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.34  E-value=4.9e-11  Score=92.26  Aligned_cols=113  Identities=22%  Similarity=0.351  Sum_probs=103.4

Q ss_pred             HHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          253 RVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       253 ~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                      .+++.|+++.|++++.++    ++.++.+|.+++.. ++....+.. .|+++.++.++.+.++.++..|+++|.+++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            467889999999999655    78899999999998 777888887 799999999999999999999999999999987


Q ss_pred             HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +.....+.+.|+++.++.++.+++.++++.|.++|.+|.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            788889999999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.32  E-value=2.9e-10  Score=101.68  Aligned_cols=272  Identities=14%  Similarity=0.103  Sum_probs=207.8

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CC---ChhHHHHHHHHHhcCCCCc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SD---GFTLQEKALSLLLNLSLDD  164 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~---~~~~~~~a~~~L~~l~~~~  164 (372)
                      .++++|.+. ..++.+.-.+..+...+.. +..+-.+++.|.+..++++++..   +.   ....-..++....-+..++
T Consensus       227 ~l~~ll~~~-v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD  304 (604)
T KOG4500|consen  227 MLLQLLPSM-VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD  304 (604)
T ss_pred             HHHHHHHHh-hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence            356666654 4667777788889998874 45899999999999999999741   11   1123344555555666777


Q ss_pred             cccccccccC-ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC----chHHHHHHHH
Q 017402          165 DNKVGLVAEG-AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK----LIREKKEAAT  239 (372)
Q Consensus       165 ~~~~~i~~~g-~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~  239 (372)
                      +....+...+ .++.++.++.+.|.+....+.-+++|++..++++..+++ .|.+..|++++...+    +...+-.++.
T Consensus       305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ls  383 (604)
T KOG4500|consen  305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLS  383 (604)
T ss_pred             hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence            7766666665 899999999999999999999999999999999999999 799999999986522    2367788999


Q ss_pred             HHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHhcCChh-HH
Q 017402          240 ALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLKTGSSR-AV  313 (372)
Q Consensus       240 aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~~~~~~-~~  313 (372)
                      +|+|+.....|+.+++.+|.++.++.++...    .-+.+..++.+....+ -..++..+...++.|++--++.+-. +.
T Consensus       384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~  463 (604)
T KOG4500|consen  384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA  463 (604)
T ss_pred             HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence            9999999999999999999999999998543    5566666666665444 3445555556677777766554433 45


Q ss_pred             HhHHHHHHHHhcC--CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          314 QCSLFTLSCLCCC--SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       314 ~~a~~~L~~l~~~--~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      -...+.|..+-++  ..+....+.+.|+++.++..+...+-..+..|.-+|-.+
T Consensus       464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~  517 (604)
T KOG4500|consen  464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST  517 (604)
T ss_pred             hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence            5667777777777  346677788899999999999999988888887776543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.32  E-value=1.4e-12  Score=105.36  Aligned_cols=59  Identities=31%  Similarity=0.639  Sum_probs=49.8

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc---------------CCCCCCCCCCCCCCCCCCCccH
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS---------------GHRTCPITKLPLPDQPSLIPNH   63 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~~n~   63 (372)
                      +..+++.||||++.+++||+++|||.||..||.+|+..               +...||.|+..++ ..++.|..
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is-~~~LvPiy   87 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS-EATLVPIY   87 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC-hhcEEEee
Confidence            34577999999999999999999999999999999842               2357999999998 67776654

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.30  E-value=2.8e-12  Score=116.47  Aligned_cols=71  Identities=23%  Similarity=0.470  Sum_probs=63.9

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ..++..+.|+||.++|.+||+++|||+||..||..|+.. ...||.|+..+. ...+.+|..+..+++.|...
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~~~   91 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFKNL   91 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccc-cccCccchHHHHHHHHHHHh
Confidence            357788999999999999999999999999999999975 457999999998 77899999999999999763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.28  E-value=5.4e-10  Score=101.40  Aligned_cols=240  Identities=22%  Similarity=0.143  Sum_probs=167.2

Q ss_pred             hHHHHHHhhc---CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc-ccc------cCChHHHHHHHhcCChHH
Q 017402          121 SASRRKLTES---GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG-LVA------EGAVSRVVAALRFGSPDC  190 (372)
Q Consensus       121 ~~~~~~i~~~---g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~------~g~i~~lv~~L~~~~~~~  190 (372)
                      .+.|..+.+.   +....++.+|...+.+.++....+..+..+..++..+.. +..      .....++++++.++|..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i  121 (312)
T PF03224_consen   42 KEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFI  121 (312)
T ss_dssp             H-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHH
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHH
Confidence            3345555554   347778888885336788999999999997766554443 332      136888999998999999


Q ss_pred             HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc---hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH
Q 017402          191 RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL---IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       191 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll  267 (372)
                      +..|+..|..+.........-.. .+.++.++..+++...   .+....|+.+|.+|...++.|..+.+.|+++.++.++
T Consensus       122 ~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL  200 (312)
T PF03224_consen  122 QLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL  200 (312)
T ss_dssp             HHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence            99999999999877655544333 4788889888886432   2566889999999999999999999999999999999


Q ss_pred             ------hhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHH-HHHHH
Q 017402          268 ------DAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQE-ICGDS  334 (372)
Q Consensus       268 ------~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~  334 (372)
                            .+.     .=.++.+++.|+..++....+.. .+.++.|+++++. ..+++.+-++.+|.|+....++ +...|
T Consensus       201 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m  279 (312)
T PF03224_consen  201 RKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM  279 (312)
T ss_dssp             H---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             HhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence                  222     34588999999999999999988 5699999999976 6788899999999999877553 88889


Q ss_pred             HhcChhHHHHHHhhc--ccHHHHHHHHHHH
Q 017402          335 RKEGVLDICMGLLED--DNEKVRRNANNLI  362 (372)
Q Consensus       335 ~~~g~~~~l~~ll~~--~~~~v~~~a~~~L  362 (372)
                      +..|+++.+-.+...  +++++.+--..+-
T Consensus       280 v~~~~l~~l~~L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  280 VLCGLLKTLQNLSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999988888777764  5777776655543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.4e-09  Score=103.83  Aligned_cols=268  Identities=17%  Similarity=0.221  Sum_probs=202.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc----
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD----  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~----  165 (372)
                      +.|...+.+. +-.+.|+.|++.|..+++   .+|..++.. |++.|+..|..+..++++...++.++.++..+++    
T Consensus        25 ~kLcDRvess-TL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   25 EKLCDRVESS-TLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHhhc-cchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            4566666654 578889999999999998   478777665 5899999999777899999999999999877653    


Q ss_pred             ---cc----------cccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCC
Q 017402          166 ---NK----------VGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGK  229 (372)
Q Consensus       166 ---~~----------~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~  229 (372)
                         .+          +.+. ..+.|..++..+...|..+|.++...|.++-...  +.+..+...+-+|..|+.+|++..
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr  179 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR  179 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence               22          1222 4688999999999999999999999999997665  456666555789999999999998


Q ss_pred             chHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhh------h--HHHHHHHHHHHhCCHhHHHHHHhccchHHH
Q 017402          230 LIREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADA------G--LERAVEVLSILVKCKEGREEMMRVSGCVGV  300 (372)
Q Consensus       230 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~------~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~  300 (372)
                      + .++..|+..|..|+......++++.- ++...|..++..      +  .+.|+.+|-||-++....+.+..+.+.++.
T Consensus       180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            8 99999999999999988888877755 788999999932      2  789999999999976655555554899999


Q ss_pred             HHHHHhc---CChh------HH----HhHHHHHHHHhcCC------HHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHH
Q 017402          301 FVKMLKT---GSSR------AV----QCSLFTLSCLCCCS------QEICGDSRKEGVLDICMGLLEDD--NEKVRRNAN  359 (372)
Q Consensus       301 L~~ll~~---~~~~------~~----~~a~~~L~~l~~~~------~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~  359 (372)
                      |.++|..   ++..      -|    -.|+.++..+..-+      ..+.+.|.+.+++..|..++-+.  ..+++..+.
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi  338 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI  338 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence            9988854   3311      11    24445555554321      13445778888888888877664  345555544


Q ss_pred             HHHH
Q 017402          360 NLIQ  363 (372)
Q Consensus       360 ~~L~  363 (372)
                      -.+.
T Consensus       339 itvA  342 (970)
T KOG0946|consen  339 ITVA  342 (970)
T ss_pred             HHHH
Confidence            4443

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=4.9e-10  Score=101.57  Aligned_cols=247  Identities=15%  Similarity=0.170  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC
Q 017402          107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG  186 (372)
Q Consensus       107 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~  186 (372)
                      .-|+-.|.|++. +...-..|+..++|..||+.|.  ..+.++.......|..|+.-.+|+..+.+.|.+..|++++...
T Consensus       281 rva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  281 RVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            446677889997 5557888899999999999999  6788999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402          187 SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL  266 (372)
Q Consensus       187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l  266 (372)
                      +++.+......|+|+|.+...+.+++. .|.+|.|+.++.+...   ..-|+..|+.++.++..+..+.....|+.+++.
T Consensus       358 h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~  433 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD  433 (791)
T ss_pred             CHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 7999999999988644   566889999999999999999999999999998


Q ss_pred             Hhhh--HH---HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhH
Q 017402          267 ADAG--LE---RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD  341 (372)
Q Consensus       267 l~~~--~e---~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~  341 (372)
                      +-++  .+   ..++.--|||.+..+.+-+++ +.++..|.+.--.....   .-...+.+++.+....+..+++  .+.
T Consensus       434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvg  507 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVG  507 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHH
Confidence            8443  22   233344689998888888888 67888877654322212   2356778888885556666655  345


Q ss_pred             HHHHHhhcccHH-HHHHHHHHHHHHh
Q 017402          342 ICMGLLEDDNEK-VRRNANNLIQTLS  366 (372)
Q Consensus       342 ~l~~ll~~~~~~-v~~~a~~~L~~l~  366 (372)
                      -|..++++++++ .--.+.+.|.+|.
T Consensus       508 dLa~i~~nd~~E~F~~EClGtlanL~  533 (791)
T KOG1222|consen  508 DLAGIAKNDNSESFGLECLGTLANLK  533 (791)
T ss_pred             HHHHHhhcCchHHHHHHHHHHHhhcc
Confidence            555666655443 3445555555543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.18  E-value=5.2e-09  Score=96.80  Aligned_cols=272  Identities=14%  Similarity=0.064  Sum_probs=193.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      ..++.+|..+  +.-+...|+..|..+...+..+.......-....+...|++ ..+...+..++.+|..|...++.|..
T Consensus       104 ~~fl~lL~~~--d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~-~~~~~~~~~~v~~L~~LL~~~~~R~~  180 (429)
T cd00256         104 EPFFNLLNRQ--DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNN-ITNNDYVQTAARCLQMLLRVDEYRFA  180 (429)
T ss_pred             HHHHHHHcCC--chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhc-cCCcchHHHHHHHHHHHhCCchHHHH
Confidence            4466777654  66778889999998876544221111000122334444542 13577889999999999999999999


Q ss_pred             ccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          170 LVAEGAVSRVVAALRFG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      +.+.++++.|+.+|+..  +.+.+-.++-.++-|+..++....... .+.|+.|+++++...-..+..-++.+|.||...
T Consensus       181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            99999999999999763  567788899999999988876666655 699999999999754338999999999999874


Q ss_pred             C-------chhHHHHhcCchHHHHHHHhhh---H-----------HHHHHHHHHHhCCH---------------------
Q 017402          248 P-------ENRKRVVSCGAVPILMRLADAG---L-----------ERAVEVLSILVKCK---------------------  285 (372)
Q Consensus       248 ~-------~~~~~i~~~g~v~~L~~ll~~~---~-----------e~a~~~L~~L~~~~---------------------  285 (372)
                      +       .....+++.|+++ ++..|...   .           +..-.-+..++..+                     
T Consensus       260 ~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         260 RVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             ccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            3       2345666776655 44444211   1           11112222233222                     


Q ss_pred             ---hHHHHHHhcc-chHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHH
Q 017402          286 ---EGREEMMRVS-GCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN  360 (372)
Q Consensus       286 ---~~~~~i~~~~-g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~  360 (372)
                         ++...+-+.+ ..+..|+++|. +.++....-|+.=+..++.+.|+.+..+-+.|+=+.+++++.+.+++||..|..
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~  418 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL  418 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence               2333344422 24688999995 356677778888899999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 017402          361 LIQTLS  366 (372)
Q Consensus       361 ~L~~l~  366 (372)
                      +++.|-
T Consensus       419 avQklm  424 (429)
T cd00256         419 AVQKLM  424 (429)
T ss_pred             HHHHHH
Confidence            998663

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=99.17  E-value=5e-09  Score=93.00  Aligned_cols=216  Identities=16%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      +..++.+.  ++.+|..|++.|..+-.... .     ....++.|..++.+ +.++.++..|+.+|.++.......    
T Consensus        59 l~~ll~~~--d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~~----  125 (280)
T PRK09687         59 AIELCSSK--NPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPLY----  125 (280)
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhccccccccc----
Confidence            44444433  67777777777777654221 1     11245666655332 567778888888888775332211    


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      ....++.+...+.+++..+|..++++|..+          .. ..+++.|+.++.+.+. .++..|+.+|..+...++  
T Consensus       126 ~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~--  191 (280)
T PRK09687        126 SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------ND-EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNP--  191 (280)
T ss_pred             chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCH--
Confidence            123455566666777778888888877543          22 3578888888887777 888888888887732211  


Q ss_pred             HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          252 KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                            .+++.|+.+|.+.    +..|+..|..+-.           ..+++.|++.+.+++  ++..|+.+|..+-.. 
T Consensus       192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-  251 (280)
T PRK09687        192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-  251 (280)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence                  3556677777443    4456655555322           457888888887654  455666666665431 


Q ss_pred             HHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHH
Q 017402          328 QEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQT  364 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~  364 (372)
                                -.++.|..+++ +.+.+++.+|.++|+.
T Consensus       252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             ----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                      36899999997 7799999999998864

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.16  E-value=1.5e-11  Score=74.29  Aligned_cols=38  Identities=37%  Similarity=0.963  Sum_probs=33.2

Q ss_pred             ccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCC
Q 017402           11 CPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPIT   49 (372)
Q Consensus        11 C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c   49 (372)
                      ||||.+.+.+| +.++|||+||+.|+.+|+.. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999987 6789987

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=1.7e-09  Score=98.14  Aligned_cols=219  Identities=17%  Similarity=0.191  Sum_probs=157.4

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc------CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES------GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      ++.+|+.-+++++.....+..+..+..+++...+.+.+.      ..+..+++++.  .++..++..|+.+|..+....+
T Consensus        60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~--~~D~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD--RNDSFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc--CCCHHHHHHHHHHHHHHHHcCC
Confidence            455555544578889999999999999888777777652      25777888777  6789999999999999876654


Q ss_pred             ccccccccCChHHHHHHHhc----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh------hcCCchHHHH
Q 017402          166 NKVGLVAEGAVSRVVAALRF----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL------QNGKLIREKK  235 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll------~~~~~~~~~~  235 (372)
                      .+..-...+.++.++.+|++    ++.+.+..++..|.+|...+++|..+.+ .|+++.|++++      .+....+++=
T Consensus       138 ~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y  216 (312)
T PF03224_consen  138 KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQY  216 (312)
T ss_dssp             T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHH
Confidence            44432225778888888875    3456778899999999999999999999 79999999999      3333357888


Q ss_pred             HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHh--HHHHHHhccchHHHHHHHHhc-
Q 017402          236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKE--GREEMMRVSGCVGVFVKMLKT-  307 (372)
Q Consensus       236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~--~~~~i~~~~g~i~~L~~ll~~-  307 (372)
                      +++.++|-|+.+++....+.+.+.|+.|++++...     ...+++++.||...+.  ....++. .|+++.+-.+..+ 
T Consensus       217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L~~rk  295 (312)
T PF03224_consen  217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNLSERK  295 (312)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHHHSS-
T ss_pred             HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHHhcCC
Confidence            99999999999999999999999999999999655     4458999999999776  6667766 4455555444433 


Q ss_pred             -CChhHHH
Q 017402          308 -GSSRAVQ  314 (372)
Q Consensus       308 -~~~~~~~  314 (372)
                       .++++.+
T Consensus       296 ~~Dedl~e  303 (312)
T PF03224_consen  296 WSDEDLTE  303 (312)
T ss_dssp             -SSHHHHH
T ss_pred             CCCHHHHH
Confidence             4555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.09  E-value=3.7e-11  Score=103.28  Aligned_cols=67  Identities=24%  Similarity=0.479  Sum_probs=60.3

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      .+.++|-||.++|+-|++++|||+||..||..++.. .+.||.|..+++ ...++.|.-+..+++.+..
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVT-ESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccc-hhhhhhhhHHHHHHHHHHH
Confidence            356889999999999999999999999999999985 778999999999 8889999999888887754

>PRK09687 putative lyase; Provisional

Probab=99.07  E-value=1.3e-08  Score=90.32  Aligned_cols=159  Identities=14%  Similarity=0.067  Sum_probs=88.6

Q ss_pred             CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh
Q 017402          132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI  211 (372)
Q Consensus       132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i  211 (372)
                      -++.|...|.  +.+..++..++.+|..+.          ....++.+..++.++++.+|..++++|..+......    
T Consensus        24 ~~~~L~~~L~--d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLD--DHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHh--CCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4666777776  677777777777777653          234456667777777777777777777776432211    


Q ss_pred             ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhH
Q 017402          212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEG  287 (372)
Q Consensus       212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~  287 (372)
                       . ..+++.|..++....++.++..|+.+|.+++......    ...++..+...+.+.    +..++.+|..+..    
T Consensus        88 -~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----  157 (280)
T PRK09687         88 -Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----  157 (280)
T ss_pred             -h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence             1 2466677666443333377777777777775422111    001223333333221    3334444432221    


Q ss_pred             HHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          288 REEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       288 ~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                             ..+++.|+.++.+.++.++..|+.+|..+
T Consensus       158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence                   33566666666665666666666666655

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.07  E-value=2.6e-11  Score=78.58  Aligned_cols=61  Identities=25%  Similarity=0.511  Sum_probs=34.2

Q ss_pred             CCCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q 017402            5 FPDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLI   69 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i   69 (372)
                      +++.+.|++|.++|++||. ..|.|.||..|+.+.+.   ..||+|+.+.. ..+++.|+.+..++
T Consensus         4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred             HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence            3456899999999999996 56999999999977553   34999999998 88999999988764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.5e-08  Score=89.52  Aligned_cols=187  Identities=22%  Similarity=0.235  Sum_probs=145.4

Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccc
Q 017402           93 ISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLV  171 (372)
Q Consensus        93 i~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~  171 (372)
                      +..+.+.+.+.+.+..|+..|..++. +-+|..-+...||+..++..+.  +.+.++++.|+++|...+.+ +..++.+.
T Consensus        87 ~~~~~~~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~  163 (342)
T KOG2160|consen   87 IVILNSSSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVI  163 (342)
T ss_pred             hhccCcccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34466666789999999999999998 5669999999999999999998  88999999999999998776 88899999


Q ss_pred             ccCChHHHHHHHhcC-ChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCC-chHHHHHHHHHHHhhcCCC
Q 017402          172 AEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGK-LIREKKEAATALYALTSFP  248 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~  248 (372)
                      +.|+++.|+..|.++ +..++..|..++..+-.+.. ....+.. .++...|.+.+.+++ +..++..|+..+..|...+
T Consensus       164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~  242 (342)
T KOG2160|consen  164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED  242 (342)
T ss_pred             HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence            999999999999875 56677899999999998774 4444555 466999999999853 3588899999999988754


Q ss_pred             c-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          249 E-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       249 ~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      . ....+-..|....++.+....    .+.++.++-.+..
T Consensus       243 ~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  243 KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            3 444333445555555555322    5555544444333

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.03  E-value=1.3e-10  Score=71.18  Aligned_cols=39  Identities=49%  Similarity=1.122  Sum_probs=35.9

Q ss_pred             ccCCcccCCCce-ecCCchHhhHHHHHHHHh-cCCCCCCCC
Q 017402           11 CPISLEIMSDPV-ILSSGHTFDRASIQRWLD-SGHRTCPIT   49 (372)
Q Consensus        11 C~ic~~~~~~Pv-~~~cgh~~c~~ci~~~~~-~~~~~CP~c   49 (372)
                      ||||.+.+.+|+ +++|||+||+.|+.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 556789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.01  E-value=1.1e-10  Score=71.02  Aligned_cols=36  Identities=36%  Similarity=0.807  Sum_probs=23.2

Q ss_pred             ccCCcccCCC----ceecCCchHhhHHHHHHHHhcC---CCCCC
Q 017402           11 CPISLEIMSD----PVILSSGHTFDRASIQRWLDSG---HRTCP   47 (372)
Q Consensus        11 C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~---~~~CP   47 (372)
                      ||||.+ |.+    |+.++|||+||+.|+++++..+   .+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    9999999999999999999754   45787

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.98  E-value=3.4e-10  Score=95.40  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=55.9

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      ..+.|-||.++++-|+.++|||+||..||.+++.. ...||+|+.... ..-++.+..++..++.+..
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~-esrlr~~s~~~ei~es~~~   89 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPC-ESRLRGSSGSREINESHAR   89 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHH-hhhcccchhHHHHHHhhhh
Confidence            45789999999999999999999999999999986 667999999888 6666677777777766654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.97  E-value=1.5e-07  Score=97.20  Aligned_cols=186  Identities=20%  Similarity=0.149  Sum_probs=107.5

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-------
Q 017402          134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV-------  206 (372)
Q Consensus       134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~-------  206 (372)
                      +.|...|.  +.++.++..++.+|..+...           -...++..|++.++.+|..|+.+|..+...+.       
T Consensus       687 ~~L~~~L~--~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D  753 (897)
T PRK13800        687 PALRDHLG--SPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD  753 (897)
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC
Confidence            56667777  67788888888888776421           12345555566666666666666554310000       


Q ss_pred             ----chhh-------hc-cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----
Q 017402          207 ----NKAT-------IG-DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----  270 (372)
Q Consensus       207 ----~~~~-------i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----  270 (372)
                          .+..       +. .....++.|..++++.+. .++..|+.+|.++...+.         .++.++..|.++    
T Consensus       754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~-~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~V  823 (897)
T PRK13800        754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDP-LVRAAALAALAELGCPPD---------DVAAATAALRASAWQV  823 (897)
T ss_pred             CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCH-HHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHH
Confidence                0000       00 001234555555555443 555555555555432211         112344444222    


Q ss_pred             HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc
Q 017402          271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD  350 (372)
Q Consensus       271 ~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~  350 (372)
                      +..|+.+|..+..           ...++.|+.++.+.+..++..|+.+|..+. .++.         ..+.|...+++.
T Consensus       824 R~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~  882 (897)
T PRK13800        824 RQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS  882 (897)
T ss_pred             HHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC
Confidence            3345555543321           446788899998888999999999988862 2122         467777888999


Q ss_pred             cHHHHHHHHHHHH
Q 017402          351 NEKVRRNANNLIQ  363 (372)
Q Consensus       351 ~~~v~~~a~~~L~  363 (372)
                      +..||+.|.++|.
T Consensus       883 d~~Vr~~A~~aL~  895 (897)
T PRK13800        883 DADVRAYARRALA  895 (897)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999985

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.96  E-value=2.7e-10  Score=72.99  Aligned_cols=47  Identities=36%  Similarity=0.728  Sum_probs=40.7

Q ss_pred             CCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++..|+||.+...+++..+|||. ||..|..+|+. ....||.||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999998 4778999998765

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.93  E-value=6.9e-10  Score=94.09  Aligned_cols=48  Identities=27%  Similarity=0.618  Sum_probs=40.5

Q ss_pred             CCCccccCCcccCCCc--------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDP--------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~P--------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .++..||||++.+.+|        +..+|||.||+.||.+|+.. ..+||.||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            4568899999987654        45679999999999999875 678999998876

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.2e-07  Score=89.84  Aligned_cols=249  Identities=17%  Similarity=0.150  Sum_probs=188.0

Q ss_pred             HHHHhhccCCChHHHHHHHHHHH-HHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLT-KLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~  169 (372)
                      |++-|... +++-.+.+|+..|. +|...+++.-..|--.-.+|.|+.+|+. ..+.++...|+++|.+|+.- +.....
T Consensus       172 LL~gL~~~-~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~a~  249 (1051)
T KOG0168|consen  172 LLQGLQAE-SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSSAI  249 (1051)
T ss_pred             HHHhcccc-CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchhhe
Confidence            55555544 47778888998885 5556666666666556789999999995 35789999999999999877 888889


Q ss_pred             ccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-
Q 017402          170 LVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-  247 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-  247 (372)
                      ++++++||.|+..|-. .-.++.+++..+|..++.. +.+..+ . +|++-..+..|.=-.. .++..|+.+..|.|.. 
T Consensus       250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~~AiL-~-AG~l~a~LsylDFFSi-~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HPKAIL-Q-AGALSAVLSYLDFFSI-HAQRVALAIAANCCKSI  325 (1051)
T ss_pred             eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-ccHHHH-h-cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            9999999999987755 6788999999999999854 344444 4 5888888877765555 7899999999999973 


Q ss_pred             -CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH----hCCHhHHHHHHhccchHHHHHHHHhcCC----hhHHH
Q 017402          248 -PENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL----VKCKEGREEMMRVSGCVGVFVKMLKTGS----SRAVQ  314 (372)
Q Consensus       248 -~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L----~~~~~~~~~i~~~~g~i~~L~~ll~~~~----~~~~~  314 (372)
                       ++.-..+++  ++|.|-.+|...    .|.++-.+..+    ...++--+++.. .|.+.....++.-..    .....
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCcccccccchh
Confidence             444445555  688888888432    45444333333    345666677787 689999999986532    23345


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc
Q 017402          315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED  349 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~  349 (372)
                      ..++.|..+|.+++..+..+.+.|+...|..++..
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            66788888899989999999999999999998865

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=4.2e-08  Score=86.80  Aligned_cols=183  Identities=18%  Similarity=0.206  Sum_probs=152.9

Q ss_pred             cCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHH
Q 017402          143 HSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINAL  221 (372)
Q Consensus       143 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~L  221 (372)
                      ++.+.+-++.|+.-|..+..+-+|...+.+.|++..++..+++.+.++|..|+++|...+.++ .....+.+ .|+.+.|
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence            346778899999999999999889899999999999999999999999999999999999877 56666777 6999999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHHHHHhc
Q 017402          222 VSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGREEMMRV  294 (372)
Q Consensus       222 v~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~~i~~~  294 (372)
                      +..+.+..+..++..|+.|++.|-.+. .+...+...++...|...+.++      +.+++..+..|......-..+...
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999997665578899999999999865 6888999999999999999663      677899999988855544446664


Q ss_pred             cchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          295 SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       295 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      .|....+..+....+..+.+.+..++..+...
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            66666777777777888899999888776654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.91  E-value=3.4e-10  Score=70.41  Aligned_cols=40  Identities=40%  Similarity=0.943  Sum_probs=33.8

Q ss_pred             cccCCcccCC---CceecCCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402           10 KCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGHRTCPITK   50 (372)
Q Consensus        10 ~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~   50 (372)
                      .|+||++.+.   .++.++|||.||..|+.+|+.. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999884   4567899999999999999987 56899996

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.89  E-value=1.8e-07  Score=96.64  Aligned_cols=219  Identities=18%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +.|++.|.+.  ++.+|..|+..|..+..           .+.++.|+..|+  +.+..++..|+.+|..+.....    
T Consensus       624 ~~L~~~L~D~--d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        624 AELAPYLADP--DPGVRRTAVAVLTETTP-----------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhccC----
Confidence            4577778765  88999999999987642           346888999998  8899999999999988742211    


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP-  248 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-  248 (372)
                           ..+.|...|.++++.+|..++.+|..+..            +-...|+..|.+++. .++..|+.+|..+-..+ 
T Consensus       685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~~~~  746 (897)
T PRK13800        685 -----PAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDH-RVRIEAVRALVSVDDVES  746 (897)
T ss_pred             -----chHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCH-HHHHHHHHHHhcccCcHH
Confidence                 13578888888999999999999888641            113456666766666 77777777777542100 


Q ss_pred             ----------chhHHHHh---------cCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH
Q 017402          249 ----------ENRKRVVS---------CGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML  305 (372)
Q Consensus       249 ----------~~~~~i~~---------~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll  305 (372)
                                +.|....+         .+.++.|..++.+.    +..++..|..+...          ...+..+...+
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL  816 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAAL  816 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHh
Confidence                      01110000         00123333333221    22233333222110          11223445555


Q ss_pred             hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          306 KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       306 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      .+.+..++..|+.+|..+..           ...++.|+.++++.+..||..|..+|..+.
T Consensus       817 ~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~  866 (897)
T PRK13800        817 RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP  866 (897)
T ss_pred             cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence            55555566666666654321           225699999999999999999999998763

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.87  E-value=5.3e-08  Score=88.33  Aligned_cols=260  Identities=16%  Similarity=0.152  Sum_probs=188.2

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG  169 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~  169 (372)
                      .|+.++.+......+|.++.+.|..+..  .+|++.++..| +..++.+-+. .+.++.+...+.+|.++..+ ++....
T Consensus       184 ~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~-~e~~e~aR~~~~il~~mFKHSeet~~~  259 (832)
T KOG3678|consen  184 LLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE-REPVELARSVAGILEHMFKHSEETCQR  259 (832)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh-cCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4778888875556779999999988775  35899998887 6666666653 36788999999999999888 566778


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      ++..|+++.++-..+..++.+...++-+|.|++.+.  +.+..|++ ..+-+-|..+..+.++ -++-.|+.+.+.|+.+
T Consensus       260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDe-l~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDE-LLRLHACLAVAVLATN  337 (832)
T ss_pred             HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHH-HHHHHHHHHHhhhhhh
Confidence            899999999999999999999999999999998765  56677777 5788888888888766 7888999999999999


Q ss_pred             CchhHHHHhcCc---hHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          248 PENRKRVVSCGA---VPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       248 ~~~~~~i~~~g~---v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      .+.-..+.+.|.   |.+++..++.++         ++++ .....-.....-+..|+-+|++..-+.+--+  + ..+|
T Consensus       338 KE~E~~VrkS~TlaLVEPlva~~DP~~---------FARD-~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~--A-F~l~  404 (832)
T KOG3678|consen  338 KEVEREVRKSGTLALVEPLVASLDPGR---------FARD-AHDYAQGRGPDDLQRLVPLLDSNRLEAQCIG--A-FYLC  404 (832)
T ss_pred             hhhhHHHhhccchhhhhhhhhccCcch---------hhhh-hhhhhccCChHHHHHhhhhhhcchhhhhhhH--H-HHHH
Confidence            887777777775   455555555431         1110 0011111123357778888874333333222  2 2334


Q ss_pred             cC----CHHH-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          325 CC----SQEI-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       325 ~~----~~~~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      ..    +..+ -+.+-+-|.|+.|-++..+.+...-.-|.++|+.+-+..
T Consensus       405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV  454 (832)
T KOG3678|consen  405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV  454 (832)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence            32    1122 234566799999999999888888889999999886653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.87  E-value=7.1e-07  Score=80.30  Aligned_cols=268  Identities=15%  Similarity=0.093  Sum_probs=191.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCH----HHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAV----SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      +..+.+|.++  +.-....+.+.+..++......    .+.+..    ..|...+.+ +.+++....++++|..+...++
T Consensus       117 ~~fl~ll~r~--d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~e  189 (442)
T KOG2759|consen  117 LSFLNLLNRQ--DTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVDE  189 (442)
T ss_pred             HHHHHHHhcC--ChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCcc
Confidence            4577778776  4444445888888887654421    111122    233444552 3678889999999999999999


Q ss_pred             ccccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          166 NKVGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      .|..++.++++..++..+.+  .+..++-+.+-.++-|+.++...+.+.. -+.|+.|..++++..-..+..-.+.++.|
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~N  268 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRN  268 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999943  4788888999999999998887777755 68999999999975333788889999999


Q ss_pred             hcCCC-------chhHHHHhcCchHHHHHHHhhh---HHHHHHH-----------HHHHhCCH-----------------
Q 017402          244 LTSFP-------ENRKRVVSCGAVPILMRLADAG---LERAVEV-----------LSILVKCK-----------------  285 (372)
Q Consensus       244 L~~~~-------~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~-----------L~~L~~~~-----------------  285 (372)
                      +....       +....++..++ +.-++.|...   .|....-           .-.|+..+                 
T Consensus       269 ll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H  347 (442)
T KOG2759|consen  269 LLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH  347 (442)
T ss_pred             HhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc
Confidence            88755       23345555544 4445555222   1221111           11222222                 


Q ss_pred             -------hHHHHHHh-ccchHHHHHHHHhcCC-hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHH
Q 017402          286 -------EGREEMMR-VSGCVGVFVKMLKTGS-SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRR  356 (372)
Q Consensus       286 -------~~~~~i~~-~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~  356 (372)
                             ++...+-+ .-..+..|+++|+..+ |....-|+.=+.....+.|+.+..+.+-|+=+.+++++.+.+++||-
T Consensus       348 k~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry  427 (442)
T KOG2759|consen  348 KSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY  427 (442)
T ss_pred             cccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence                   22222333 1235888999997754 77777888888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 017402          357 NANNLIQTLS  366 (372)
Q Consensus       357 ~a~~~L~~l~  366 (372)
                      +|..++..|-
T Consensus       428 ~ALlavQ~lm  437 (442)
T KOG2759|consen  428 HALLAVQKLM  437 (442)
T ss_pred             HHHHHHHHHH
Confidence            9999997653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.87  E-value=2.2e-09  Score=67.25  Aligned_cols=43  Identities=49%  Similarity=1.089  Sum_probs=38.3

Q ss_pred             cccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402           10 KCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLP   52 (372)
Q Consensus        10 ~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~   52 (372)
                      .|+||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888776 999999999999998767789999864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.5e-09  Score=92.27  Aligned_cols=51  Identities=25%  Similarity=0.529  Sum_probs=45.3

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPS   58 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~   58 (372)
                      +..+.|.+|++..++|--++|||.||-+||..|..+ ...||.||..++ +..
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~-psk  287 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQ-PSK  287 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCC-Ccc
Confidence            445899999999999999999999999999999986 566999999988 443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=9.7e-10  Score=90.59  Aligned_cols=56  Identities=29%  Similarity=0.677  Sum_probs=48.8

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCCCCccH
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPNH   63 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~~~~n~   63 (372)
                      ..|.|-||++.-+|||++.|||-||=.||.+|+..  +...||+|+..++ ..+++|-+
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs-~~~vvPlY  103 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS-IDTVVPLY  103 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc-cceEEeee
Confidence            46899999999999999999999999999999964  3457999999998 77776644

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.1e-09  Score=84.56  Aligned_cols=51  Identities=29%  Similarity=0.641  Sum_probs=41.7

Q ss_pred             CCccccCCcccCCC--ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSD--PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL   59 (372)
Q Consensus         7 ~~~~C~ic~~~~~~--Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~   59 (372)
                      .-|.||||++-+.+  ||...|||.||+.||.+.+.. ...||.|++.++ ++.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt-~k~~  182 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKIT-HKQF  182 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccc-hhhh
Confidence            45899999998865  456789999999999998885 667999998777 4433

>PHA02926 zinc finger-like protein; Provisional

Probab=98.81  E-value=3.4e-09  Score=86.59  Aligned_cols=51  Identities=22%  Similarity=0.473  Sum_probs=40.7

Q ss_pred             CCCCCccccCCcccCCC---------ceecCCchHhhHHHHHHHHhcC-----CCCCCCCCCCCC
Q 017402            4 QFPDDFKCPISLEIMSD---------PVILSSGHTFDRASIQRWLDSG-----HRTCPITKLPLP   54 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~---------Pv~~~cgh~~c~~ci~~~~~~~-----~~~CP~c~~~~~   54 (372)
                      ..+++..|+||++...+         ++..+|+|+||..||.+|....     ...||.||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            35678899999997643         3456899999999999999742     346999999876

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=5.7e-07  Score=87.12  Aligned_cols=229  Identities=17%  Similarity=0.186  Sum_probs=168.9

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhc-CCCC-ccccccccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccc-cch
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLN-LSLD-DDNKVGLVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVE-VNK  208 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~-~~~~~~i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~-~~~  208 (372)
                      +..|+.=|.. ..++..+..++.-|.. |.+. ++.-..|.-.-++|.|+.+|++. +.++...||++|.+|+..- ...
T Consensus       169 ~kkLL~gL~~-~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQA-ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccc-cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            3444444442 2356666666666654 3443 44333444567899999999985 7999999999999998654 455


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh---hh-HHHHHHHHHHHhCC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD---AG-LERAVEVLSILVKC  284 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~---~~-~e~a~~~L~~L~~~  284 (372)
                      ..++. .++||.|+.-|..-..-++.++++.+|-.++...  -..+.++|++...+..|+   -. +..|+++.+|.|..
T Consensus       248 a~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  248 AIVVD-EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             heeec-ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55666 7999999988776444489999999999998743  256789999999888884   22 88899999999983


Q ss_pred             --HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc---CCHHHHHHHHhcChhHHHHHHhhcc----cHHHH
Q 017402          285 --KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC---CSQEICGDSRKEGVLDICMGLLEDD----NEKVR  355 (372)
Q Consensus       285 --~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~~~~l~~ll~~~----~~~v~  355 (372)
                        ++.-..+++   ++|.|..+++..+.+..+.++.++..++.   ++++.-+.+...|.+....+|+...    +..+.
T Consensus       325 i~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  325 IRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             CCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence              444455555   79999999999888889998888888864   4578888899999999999988653    34455


Q ss_pred             HHHHHHHHHHhcC
Q 017402          356 RNANNLIQTLSGN  368 (372)
Q Consensus       356 ~~a~~~L~~l~~~  368 (372)
                      ....++|+.+..+
T Consensus       402 ~~vIrmls~msS~  414 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSG  414 (1051)
T ss_pred             hHHHHHHHHHccC
Confidence            6666666665543

>smart00184 RING Ring finger

Probab=98.77  E-value=9e-09  Score=62.15  Aligned_cols=39  Identities=59%  Similarity=1.207  Sum_probs=35.7

Q ss_pred             ccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCC
Q 017402           11 CPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPIT   49 (372)
Q Consensus        11 C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c   49 (372)
                      |+||.+...+|+.++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998556789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.75  E-value=6.6e-08  Score=73.20  Aligned_cols=130  Identities=17%  Similarity=0.189  Sum_probs=110.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      ..|+..... +++.+.+.+....|.|++. +|.|...+.+.+++...++.|.  ..+..+.+.++..|+|++.++.+.+.
T Consensus        19 q~LV~efq~-tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   19 QHLVDEFQT-TTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHH-hccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhccChHHHHH
Confidence            345655554 3688999999999999998 7889999999999999999999  88999999999999999999999999


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHH
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSL  224 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~l  224 (372)
                      |.++++++.++..+++....+...|+.++..|+..+ ..+..+.. ..++..+.+.
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~  149 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW  149 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence            999999999999999999999999999999998766 45566655 4455444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.4e-06  Score=75.33  Aligned_cols=268  Identities=16%  Similarity=0.149  Sum_probs=188.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+++.+|.+.  ++.+|..|+..+..++..  ..+..... .-.++.+.+++.  ...+  .+.|+.+|.|++.+...++
T Consensus         6 ~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~--~~~~--~~~a~~alVnlsq~~~l~~   77 (353)
T KOG2973|consen    6 VELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK--DLDP--AEPAATALVNLSQKEELRK   77 (353)
T ss_pred             HHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc--Cccc--ccHHHHHHHHHHhhHHHHH
Confidence            3577888877  789999999999999875  24444432 356788888888  4444  7889999999999988888


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh-ccc-----cchHHHHHHHhhcCCc-hHHHHHHHHHH
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI-GDY-----PYAINALVSLLQNGKL-IREKKEAATAL  241 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~-----~g~i~~Lv~ll~~~~~-~~~~~~a~~aL  241 (372)
                      .+.+. .+..+++.+.+.....-..++.+|.|++..++....+ ...     .|.+.......+.+-. -.-....+-.+
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            77777 8888888887777777788999999999887543332 111     2444444444443322 13355667788


Q ss_pred             HhhcCCCchhHHHHhcCchH--HHHHHHh--hh--HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHH------------
Q 017402          242 YALTSFPENRKRVVSCGAVP--ILMRLAD--AG--LERAVEVLSILVKCKEGREEMMRV-SGCVGVFV------------  302 (372)
Q Consensus       242 ~~L~~~~~~~~~i~~~g~v~--~L~~ll~--~~--~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~------------  302 (372)
                      .||+..+.+|..+.+...++  .++.+-.  +.  +...+.+|.|.|.....+..+... ...++.|+            
T Consensus       157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            99999999999998765322  1222222  11  456889999999988887776662 11223222            


Q ss_pred             ---------HHHh-----cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHhc
Q 017402          303 ---------KMLK-----TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       303 ---------~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~  367 (372)
                               +++-     ..++.++..-+.+|.-+|.. ...|+.+++.|+.+.+.++=+. .+++++++...+...|-+
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                     2331     13567888889999999987 8999999999999888887765 588888888888876654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.73  E-value=5.8e-06  Score=76.85  Aligned_cols=235  Identities=19%  Similarity=0.157  Sum_probs=169.4

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc-cccc-----cCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV-GLVA-----EGAVSRVVAALRFGSPDCRAIAATIITSLAVV  204 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~-----~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~  204 (372)
                      ..+..++.+|.. ....++....+..+..|...++.+. .+.+     .+...+++.+|.++|.-+...++..|..+...
T Consensus        53 ~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            457778888875 3667888888888888766654433 2332     35678888899888999999999999999765


Q ss_pred             ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHH
Q 017402          205 EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVL  278 (372)
Q Consensus       205 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L  278 (372)
                      ......-....-.+..|...+++.++...+..|+.+|.+|...++.|..+.+.++++.|+.+|+..      .=.++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            432211111012344556666655434788889999999999999999999999999999999652      23578889


Q ss_pred             HHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC------HHHHHHHHhcChhHHHHHHhhc--
Q 017402          279 SILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS------QEICGDSRKEGVLDICMGLLED--  349 (372)
Q Consensus       279 ~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~g~~~~l~~ll~~--  349 (372)
                      +-|+..++....... .+.++.|+++++. ..+++.+-++.+|.|+...+      ......|+..|+.+.+-.+...  
T Consensus       212 WlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         212 WLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            999998887776655 7899999999976 56788899999999998742      2455678888877766555543  


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q 017402          350 DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       350 ~~~~v~~~a~~~L~~l~~  367 (372)
                      +++++.+.-..+-..|.+
T Consensus       291 ~DedL~edl~~L~e~L~~  308 (429)
T cd00256         291 DDEDLTDDLKFLTEELKN  308 (429)
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            477776665555554443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=8.5e-09  Score=94.96  Aligned_cols=70  Identities=33%  Similarity=0.690  Sum_probs=60.8

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL   77 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~   77 (372)
                      ...+++.||||++.|.+|++++|||+||+.|+..++. ....||.|+. .. . .+.+|..+..+++.+.....
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~-~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-R-NLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-h-ccCccHHHHHHHHHHHhcCC
Confidence            3568899999999999998899999999999999998 5678999996 43 2 77799999999999987644

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.69  E-value=1.9e-08  Score=62.34  Aligned_cols=41  Identities=27%  Similarity=0.553  Sum_probs=34.9

Q ss_pred             cccCCcccC---CCceecCCchHhhHHHHHHHHhcCCCCCCCCCC
Q 017402           10 KCPISLEIM---SDPVILSSGHTFDRASIQRWLDSGHRTCPITKL   51 (372)
Q Consensus        10 ~C~ic~~~~---~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~   51 (372)
                      .|++|.+.+   ..|++++|||+||..|+.++. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999988   467789999999999999988 44678999974

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=6.5e-09  Score=90.55  Aligned_cols=70  Identities=27%  Similarity=0.413  Sum_probs=60.9

Q ss_pred             CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      +.-++.||||+++++...+.+ |+|.||..||...+..++..||.||+.+.....++++..+..++.++..
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~  110 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP  110 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence            445789999999999998876 9999999999999988899999999998778888888888887776654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.63  E-value=4.5e-08  Score=85.56  Aligned_cols=62  Identities=23%  Similarity=0.477  Sum_probs=47.2

Q ss_pred             CCccccCCcc-cCCCce---ec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCccHHHHHHH
Q 017402            7 DDFKCPISLE-IMSDPV---IL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPS----LIPNHALRSLI   69 (372)
Q Consensus         7 ~~~~C~ic~~-~~~~Pv---~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~----~~~n~~l~~~i   69 (372)
                      ++..||+|.. .+..|-   .+ +|||.||..|+.+.|..+...||.|+.++. ...    +.++..+.+-+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr-k~~fr~q~F~D~~vekEV   72 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR-KNNFRVQLFEDPTVEKEV   72 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc-hhhccccccccHHHHHHH
Confidence            4578999997 355663   23 699999999999999877789999999988 555    44555555544

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.61  E-value=1e-08  Score=66.74  Aligned_cols=43  Identities=37%  Similarity=0.890  Sum_probs=30.5

Q ss_pred             CCccccCCcccCCCcee-cCCchHhhHHHHHHHHhc-CCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDS-GHRTCPIT   49 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~-~~~~CP~c   49 (372)
                      ..+.|||++..|.+||+ ..|||+|++..|.+|+.. +...||+.
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~   54 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA   54 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence            46899999999999997 579999999999999943 35589983

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.60  E-value=9.2e-07  Score=67.10  Aligned_cols=150  Identities=13%  Similarity=0.094  Sum_probs=127.9

Q ss_pred             cchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHH
Q 017402          215 PYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREE  290 (372)
Q Consensus       215 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~  290 (372)
                      -+-+..||.-.+...+.+.++..+.-|.|.+.++-|-..+.+..+++..++-|...    .+..+..|+|+|.+..+.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            36778888888776555899999999999999999999999999999999999655    78899999999999999999


Q ss_pred             HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      |.+ .++++.++..+++..+..--.|+..|..++-.+...+.++..--++..+.+.-.+-+...|.-|...|...
T Consensus        95 I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   95 IRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             HHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999 89999999999887777778899999999998888899999888888888777666666666676666543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.60  E-value=1.2e-05  Score=78.85  Aligned_cols=238  Identities=17%  Similarity=0.191  Sum_probs=161.8

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      .++..|.-|++.|.+++.  ++..+.     .++.+.+++.  +.++.+|..|+.++..+......  .+... .++.+.
T Consensus        91 ~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~  158 (526)
T PF01602_consen   91 PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLK  158 (526)
T ss_dssp             SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHH
T ss_pred             CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHh
Confidence            378899999999999883  444444     3788889999  88999999999999998654222  12223 789999


Q ss_pred             HHHhcCChHHHHHHHHHHHHh-cccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402          181 AALRFGSPDCRAIAATIITSL-AVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA  259 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~  259 (372)
                      .+|.+.++.++..|+.++..+ ...+... .+.  ...+..|.+++...++ -.+...+..|..++........-  ...
T Consensus       159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~--~~~~~~L~~~l~~~~~-~~q~~il~~l~~~~~~~~~~~~~--~~~  232 (526)
T PF01602_consen  159 QLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI--PKLIRILCQLLSDPDP-WLQIKILRLLRRYAPMEPEDADK--NRI  232 (526)
T ss_dssp             HHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH--HHHHHHHHHHHTCCSH-HHHHHHHHHHTTSTSSSHHHHHH--HHH
T ss_pred             hhccCCcchhHHHHHHHHHHHccCcchhh-hhH--HHHHHHhhhcccccch-HHHHHHHHHHHhcccCChhhhhH--HHH
Confidence            999999999999999999999 2111112 111  3566666666666666 78888889998888755432211  446


Q ss_pred             hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402          260 VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR  335 (372)
Q Consensus       260 v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  335 (372)
                      ++.+..++.+.    .-.++.++..+.....    ..  ..+++.|..++.+.++.++-.++..|..++...+    ..+
T Consensus       233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~~v  302 (526)
T PF01602_consen  233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----PAV  302 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----HHH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----hhh
Confidence            67777777554    3345666666666554    22  3478889999988888889999999999887752    222


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      . .....+..+..+++..+|..+..+|..+..
T Consensus       303 ~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  303 F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            2 222223333336778888888888876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=9.3e-06  Score=78.42  Aligned_cols=273  Identities=15%  Similarity=0.159  Sum_probs=203.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcCh----------------HHHHHHhh-cCCHHHHHHHHhhcCCChhHHHH
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDS----------------ASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEK  152 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~  152 (372)
                      +.+|+.|..+-.|++....++..+..+...++                ...+.|++ .+.|..|+.++.  ..+-.++..
T Consensus        64 k~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~  141 (970)
T KOG0946|consen   64 KPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLY  141 (970)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhH
Confidence            56999999888899999999999998886552                12334444 488999999998  788899999


Q ss_pred             HHHHHhcCCCC--cccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402          153 ALSLLLNLSLD--DDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK  229 (372)
Q Consensus       153 a~~~L~~l~~~--~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~  229 (372)
                      ++..|.++-..  .+.+..+. ..-+|..++.+|.+....+|-.+.-.|..+..+...-.+++...++++.|..++....
T Consensus       142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG  221 (970)
T KOG0946|consen  142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG  221 (970)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999997655  34444444 5789999999999888889999999999999888887888777899999999998643


Q ss_pred             --c-hHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhh---------h--------HHHHHHHHHHHhCC----
Q 017402          230 --L-IREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADA---------G--------LERAVEVLSILVKC----  284 (372)
Q Consensus       230 --~-~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~---------~--------~e~a~~~L~~L~~~----  284 (372)
                        + .-+...++..|-||-.+. .|...+.+.+.||.|.++|..         +        .-.++.++..|..-    
T Consensus       222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~  301 (970)
T KOG0946|consen  222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS  301 (970)
T ss_pred             CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence              2 368889999999988854 688888899999999999821         1        12367777777662    


Q ss_pred             ---HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh------hHHHHH----Hhhc
Q 017402          285 ---KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQEICGDSRKEGV------LDICMG----LLED  349 (372)
Q Consensus       285 ---~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~------~~~l~~----ll~~  349 (372)
                         ..++..+.. .+++..|..++.+.  ..+++..+.-+++++.+++..+...+.+..+      .+.++-    +..+
T Consensus       302 ~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne  380 (970)
T KOG0946|consen  302 SITHQNQKALVS-SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE  380 (970)
T ss_pred             HHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence               223344455 78899998888764  4577888888999999888888888866321      122222    2222


Q ss_pred             -ccHHHHHHHHHHHHHH
Q 017402          350 -DNEKVRRNANNLIQTL  365 (372)
Q Consensus       350 -~~~~v~~~a~~~L~~l  365 (372)
                       .....|=+...+++.+
T Consensus       381 ~q~~~lRcAv~ycf~s~  397 (970)
T KOG0946|consen  381 KQPFSLRCAVLYCFRSY  397 (970)
T ss_pred             cCCchHHHHHHHHHHHH
Confidence             3556666666666543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.52  E-value=1.2e-05  Score=78.11  Aligned_cols=231  Identities=19%  Similarity=0.129  Sum_probs=162.1

Q ss_pred             CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc----ccccccccCChHHHHHHHhc-------CChHHHHHHHHHHHH
Q 017402          132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD----NKVGLVAEGAVSRVVAALRF-------GSPDCRAIAATIITS  200 (372)
Q Consensus       132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~i~~lv~~L~~-------~~~~~~~~a~~~L~~  200 (372)
                      .+...+.+|+  ..+.+-+-.++-.+.++..+++    .++.|.++=+.+.+-++|++       +....+..|..+|..
T Consensus         6 ~l~~c~~lL~--~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    6 SLEKCLSLLK--SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHhc--cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3566788888  6677778888888888877643    24457777778999999987       235677789999999


Q ss_pred             hcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh---HHHHHHH
Q 017402          201 LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG---LERAVEV  277 (372)
Q Consensus       201 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~  277 (372)
                      ++..++....-.- .+-||.|++.+.+.++..+...++.+|..++.+++++..+++.|+|+.|.+.+.+.   .|.++.+
T Consensus        84 f~~~~~~a~~~~~-~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l  162 (543)
T PF05536_consen   84 FCRDPELASSPQM-VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNL  162 (543)
T ss_pred             HcCChhhhcCHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence            9986654332211 36799999999887655899999999999999999999999999999999999654   7899999


Q ss_pred             HHHHhCCHhHHHHHHhcc----chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHH-----HHHHHHhcChhHHHHHHhh
Q 017402          278 LSILVKCKEGREEMMRVS----GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE-----ICGDSRKEGVLDICMGLLE  348 (372)
Q Consensus       278 L~~L~~~~~~~~~i~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~g~~~~l~~ll~  348 (372)
                      +.+++..... ...-+..    ..++.+.+.+.......+-..+..|..+-...+.     ....-+-..+..-+..+++
T Consensus       163 L~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  163 LLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            9998874331 1111212    2344455555444445566677777776555421     1122233446666777777


Q ss_pred             cc-cHHHHHHHHHHHHHHh
Q 017402          349 DD-NEKVRRNANNLIQTLS  366 (372)
Q Consensus       349 ~~-~~~v~~~a~~~L~~l~  366 (372)
                      +- .+.-|..|..+...|-
T Consensus       242 sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            64 6666777776665553

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=6e-08  Score=81.49  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=43.5

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHH-HHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQR-WLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~-~~~~~~~~CP~c~~~~~   54 (372)
                      ..++.|+||.+.+.+|.-++|||.||-.||.. |-.+....||.||....
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            45899999999999999999999999999999 66665567999998776

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.49  E-value=5.1e-05  Score=70.02  Aligned_cols=266  Identities=18%  Similarity=0.180  Sum_probs=189.6

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      +...+-++  +.++|..+++.++.+.. +++.-+.+.+.+.-..++..|.....+..-+++|++.+..+...+.+... .
T Consensus        30 i~~~lL~~--~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~  105 (371)
T PF14664_consen   30 IQCMLLSD--SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I  105 (371)
T ss_pred             HHHHHCCC--cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence            33344444  48999999999999888 66788899999988888888875434555688999999887655444332 3


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      ..|++..++.+.++.++..+..|..+|..++..+  -+.+.. .|++..|++.+-++.. +..+..+.++..+-.++..|
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~-~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAE-CGGIRVLLRALIDGSF-SISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH-cCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCcchh
Confidence            6789999999999999999999999999998654  333444 6899999999998766 68888889999999999998


Q ss_pred             HHHHhcCchHHHHHHH-hh-------h-----HHHHHHHHHHHhCCHhHHHHHHhcc-chHHHHHHHHhcCChhHHHhHH
Q 017402          252 KRVVSCGAVPILMRLA-DA-------G-----LERAVEVLSILVKCKEGREEMMRVS-GCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll-~~-------~-----~e~a~~~L~~L~~~~~~~~~i~~~~-g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                      ..+...--+..++.-+ +.       .     -..+..++..+-+...|--.+...+ .++..|+..|...++.+++...
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence            8776543344444433 11       0     1234555555555555555554433 4677777777666666666666


Q ss_pred             HHHHHHhcC------------------CH------------------------------H----HHHHHHhcChhHHHHH
Q 017402          318 FTLSCLCCC------------------SQ------------------------------E----ICGDSRKEGVLDICMG  345 (372)
Q Consensus       318 ~~L~~l~~~------------------~~------------------------------~----~~~~~~~~g~~~~l~~  345 (372)
                      .++..+-.-                  +.                              .    ....+++.|.++.|++
T Consensus       262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~  341 (371)
T PF14664_consen  262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE  341 (371)
T ss_pred             HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence            666555210                  00                              0    0123578999999999


Q ss_pred             Hhhcc-cHHHHHHHHHHHHHH
Q 017402          346 LLEDD-NEKVRRNANNLIQTL  365 (372)
Q Consensus       346 ll~~~-~~~v~~~a~~~L~~l  365 (372)
                      +..+. ++.+..+|.-+|..+
T Consensus       342 li~~~~d~~l~~KAtlLL~el  362 (371)
T PF14664_consen  342 LIESSEDSSLSRKATLLLGEL  362 (371)
T ss_pred             HHhcCCCchHHHHHHHHHHHH
Confidence            99987 889999999988643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.48  E-value=1.1e-07  Score=82.61  Aligned_cols=67  Identities=15%  Similarity=0.417  Sum_probs=55.4

Q ss_pred             CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCC---CCCCCccHHHHHHHHHH
Q 017402            5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPD---QPSLIPNHALRSLISNF   72 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~---~~~~~~n~~l~~~i~~~   72 (372)
                      +-...+|.+|..+|.|+.|+. |-||||+.||.+++.. ..+||.|+..+..   ...+..+++++.++..+
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            445678999999999999876 9999999999999987 7789999987662   34577788888777555

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.47  E-value=1.1e-07  Score=65.88  Aligned_cols=40  Identities=35%  Similarity=0.803  Sum_probs=32.2

Q ss_pred             cccCCcccCCCc------------e-ecCCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402           10 KCPISLEIMSDP------------V-ILSSGHTFDRASIQRWLDSGHRTCPITK   50 (372)
Q Consensus        10 ~C~ic~~~~~~P------------v-~~~cgh~~c~~ci~~~~~~~~~~CP~c~   50 (372)
                      .|+||++.+.+|            + ...|||.|+..||.+|+.. ..+||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            499999999443            2 3479999999999999986 45899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=9.3e-08  Score=87.79  Aligned_cols=53  Identities=34%  Similarity=0.639  Sum_probs=45.7

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcC----CCCCCCCCCCCCCCCCCCc
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG----HRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~----~~~CP~c~~~~~~~~~~~~   61 (372)
                      +..||||++...-|+.+.|||.||-.||.++|..+    ...||.|+..++ .+++.|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~-~kdl~p  242 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT-LKDLLP  242 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc-ccceee
Confidence            78899999999999999999999999999999754    357999999888 655544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.44  E-value=1.1e-05  Score=78.93  Aligned_cols=250  Identities=18%  Similarity=0.157  Sum_probs=172.9

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .++.+.++.+  .+...|+=+.-.+..+...+++....     ++..+.+=|.  +.++.++..|+++|.++... +.. 
T Consensus        44 ~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~--~~n~~~~~lAL~~l~~i~~~-~~~-  112 (526)
T PF01602_consen   44 FMEVIKLISS--KDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLN--SPNPYIRGLALRTLSNIRTP-EMA-  112 (526)
T ss_dssp             HHHHHCTCSS--SSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHC--SSSHHHHHHHHHHHHHH-SH-HHH-
T ss_pred             HHHHHHHhCC--CCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhc--CCCHHHHHHHHhhhhhhccc-chh-
Confidence            3556666663  47888888888888888877652111     3555555566  78899999999999998732 221 


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                          .-.++.+.+++.++++.+|..|+.++..+....  ...+.. . .++.+..++.+.+. .++..|+.++..+..++
T Consensus       113 ----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~--p~~~~~-~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  113 ----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD--PDLVED-E-LIPKLKQLLSDKDP-SVVSAALSLLSEIKCND  183 (526)
T ss_dssp             ----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--HCCHHG-G-HHHHHHHHTTHSSH-HHHHHHHHHHHHHHCTH
T ss_pred             ----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--HHHHHH-H-HHHHHhhhccCCcc-hhHHHHHHHHHHHccCc
Confidence                335788999999999999999999999997553  223322 2 79999999988776 99999999999991111


Q ss_pred             chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      +....++ ...++.|.+++...    +..++.+|..++........-   ...++.+..++++.++.+.-.|+.++..+.
T Consensus       184 ~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  184 DSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            1111111 11233344443222    456667777666643332211   347888888888888899999999998877


Q ss_pred             cCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       325 ~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .. +.     .-..+++.|..++.+.++++|-.+...|..+...
T Consensus       260 ~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~  297 (526)
T PF01602_consen  260 PS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS  297 (526)
T ss_dssp             SS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred             cc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence            65 33     3345789999999999999999999999877543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.1e-07  Score=91.62  Aligned_cols=54  Identities=22%  Similarity=0.428  Sum_probs=47.9

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI   60 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~   60 (372)
                      ..-++||.|..-++|.|++.|||.||..|+..........||.|+..|. ..++.
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg-anDv~  694 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG-ANDVH  694 (698)
T ss_pred             HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC-ccccc
Confidence            3558999999999999999999999999999999877889999999998 65553

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.40  E-value=2.8e-05  Score=71.70  Aligned_cols=247  Identities=18%  Similarity=0.155  Sum_probs=174.6

Q ss_pred             HHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC--Ch
Q 017402          111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG--SP  188 (372)
Q Consensus       111 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~--~~  188 (372)
                      ..|..+-...+..+..+.-.-..+.+..++-  +++.+++..+.++++.+..+.+.-..+.+.+.--.++.-|..+  +.
T Consensus         5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~   82 (371)
T PF14664_consen    5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL--SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND   82 (371)
T ss_pred             HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence            3445555556656666555555666665555  4559999999999999998988888888888777888888664  56


Q ss_pred             HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh
Q 017402          189 DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD  268 (372)
Q Consensus       189 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~  268 (372)
                      .-|++|...+..+.....+...+-  .|++..++......++ ..+..++.+|+.++..+  -+.++++||+..|++.+-
T Consensus        83 ~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D-~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~  157 (371)
T PF14664_consen   83 VEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDD-RLRRICLETLCELALLN--PELVAECGGIRVLLRALI  157 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHH
Confidence            678899999999876654444443  4899999999999888 99999999999999743  245678999999999985


Q ss_pred             hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC-------Ch--hHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402          269 AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG-------SS--RAVQCSLFTLSCLCCCSQEICGDSR  335 (372)
Q Consensus       269 ~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~  335 (372)
                      ++    .+..+.++-.+-..+..|..+.. +--++.+..-+.+.       +.  ..-+.+..++..+-+.=+..-.--.
T Consensus       158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~  236 (371)
T PF14664_consen  158 DGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM  236 (371)
T ss_pred             hccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence            44    67788888999999999988777 23355554444322       11  1224444555554332121111111


Q ss_pred             hc-ChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          336 KE-GVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       336 ~~-g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .. .+++.|+..+...++++|+....++--+
T Consensus       237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             CCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            11 4788899999999999999988887533

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00021  Score=65.00  Aligned_cols=234  Identities=18%  Similarity=0.176  Sum_probs=174.5

Q ss_pred             HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc---cc-------cccccccCChH
Q 017402          108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD---DN-------KVGLVAEGAVS  177 (372)
Q Consensus       108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~---~~-------~~~i~~~g~i~  177 (372)
                      ..++.+.-++. -|+....+++.++|+.|+.+|.  +.+.++....+..|..|...+   ++       ..++++.++++
T Consensus       103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla  179 (536)
T KOG2734|consen  103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA  179 (536)
T ss_pred             HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence            45666777776 6888889999999999999999  899999999999999987542   11       23667789999


Q ss_pred             HHHHHHhcCChH------HHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCC-
Q 017402          178 RVVAALRFGSPD------CRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFP-  248 (372)
Q Consensus       178 ~lv~~L~~~~~~------~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~-  248 (372)
                      .|++-++.-|..      ........+.|+.... +....+++ .|.+..|+.-+... .....+..|..+|.-+-.+. 
T Consensus       180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~  258 (536)
T KOG2734|consen  180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD  258 (536)
T ss_pred             HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence            999988764433      3455667777887655 56666777 58888888866543 22367788888888876654 


Q ss_pred             chhHHHHhcCchHHHHHHH-----hhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402          249 ENRKRVVSCGAVPILMRLA-----DAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQC  315 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll-----~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~  315 (372)
                      +++.....-.+|+.+++-+     ..+        .++....|+.+...+.++..+.. +.++....-+++. ....+..
T Consensus       259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~S  336 (536)
T KOG2734|consen  259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGS  336 (536)
T ss_pred             hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhh
Confidence            5888888889999999887     111        45667777777789999999999 4556554444433 4566788


Q ss_pred             HHHHHHHHhcCCH--HHHHHHHhcChhHHHHHHh
Q 017402          316 SLFTLSCLCCCSQ--EICGDSRKEGVLDICMGLL  347 (372)
Q Consensus       316 a~~~L~~l~~~~~--~~~~~~~~~g~~~~l~~ll  347 (372)
                      |.++|-....+.+  .++..+++.+++..+..+.
T Consensus       337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            9999988776644  8889999988777777654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.37  E-value=9.9e-06  Score=76.85  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHH
Q 017402          100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSR  178 (372)
Q Consensus       100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~  178 (372)
                      ..|.+.+..|+..+.+++..-...+..+....+..+|+++|.  .++..++..++++|.|+..+ .+.|..+...|+|+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            356778888888888888755556777777899999999997  78889999999999999888 788999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHh
Q 017402          179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVS  256 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~  256 (372)
                      +.+++.+.+..++..+.|+|.++..+.+...+..-... ....++.+..+++. .+++.+...|+||.-+. +....+++
T Consensus       466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~-~Vqeq~fqllRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW-AVQEQCFQLLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH-HHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            99999999999999999999999988866555432223 33455566666666 99999999999997654 56666665


Q ss_pred             c
Q 017402          257 C  257 (372)
Q Consensus       257 ~  257 (372)
                      .
T Consensus       545 ~  545 (678)
T KOG1293|consen  545 K  545 (678)
T ss_pred             h
Confidence            4

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.36  E-value=7e-05  Score=71.28  Aligned_cols=279  Identities=12%  Similarity=0.063  Sum_probs=187.0

Q ss_pred             CCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCC
Q 017402           85 ANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLD  163 (372)
Q Consensus        85 ~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~  163 (372)
                      .-..+|.+..++.....+++.+.+.+..+..+..+.......+.+.+.++.|+++|.  +.+ ..+++..++.+.++...
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs--~sD~~~~le~~l~~lR~Ifet  126 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLS--ESDSLNVLEKTLRCLRTIFET  126 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhc--CcchHhHHHHHHHHHHHHHhc
Confidence            344556777887777667788878888888888878888999999999999999999  555 77999999999997655


Q ss_pred             cccccccc---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          164 DDNKVGLV---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       164 ~~~~~~i~---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      ...+....   ....+..+..++..+.......-+....+++...+.+....+ .|+.+.+.-++...+. ..+..|+..
T Consensus       127 ~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~N-a~i~ekI~~l~~~~s~-~~RlaaL~~  204 (678)
T KOG1293|consen  127 SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCN-AGILEKINILLMYLSS-KLRLAALLC  204 (678)
T ss_pred             ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheecc-ccchhhHHHHHHhhhH-HHHHHHHHH
Confidence            43333222   245666666666546666666677777777777666666666 6776666666555444 677777777


Q ss_pred             HH---hhcCCCc-hhHHHH----hcCchHH--HHHHHhhh----HHHHH-------------------------------
Q 017402          241 LY---ALTSFPE-NRKRVV----SCGAVPI--LMRLADAG----LERAV-------------------------------  275 (372)
Q Consensus       241 L~---~L~~~~~-~~~~i~----~~g~v~~--L~~ll~~~----~e~a~-------------------------------  275 (372)
                      ++   ++..+++ ....++    ..|..+.  +.+++.++    +..++                               
T Consensus       205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~  284 (678)
T KOG1293|consen  205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV  284 (678)
T ss_pred             hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence            77   5555443 322222    2233331  11221100    00000                               


Q ss_pred             -----------------------------------------------------------------------HHHHHHhCC
Q 017402          276 -----------------------------------------------------------------------EVLSILVKC  284 (372)
Q Consensus       276 -----------------------------------------------------------------------~~L~~L~~~  284 (372)
                                                                                             .++..++.+
T Consensus       285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~  364 (678)
T KOG1293|consen  285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG  364 (678)
T ss_pred             HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence                                                                                   000000000


Q ss_pred             H--hHHH--------------------------------------HH---HhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402          285 K--EGRE--------------------------------------EM---MRVSGCVGVFVKMLKTGSSRAVQCSLFTLS  321 (372)
Q Consensus       285 ~--~~~~--------------------------------------~i---~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  321 (372)
                      .  ..++                                      .+   ..+..+..+|+.++..++..++..+.++|.
T Consensus       365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~  444 (678)
T KOG1293|consen  365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAIC  444 (678)
T ss_pred             cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHH
Confidence            0  0000                                      00   112456788889998888899999999999


Q ss_pred             HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      |+.-.....+..+++.|+++.+...+.+.++.+|..+.|.|+.+.-
T Consensus       445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            9998778899999999999999999999999999999999987654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=9.4e-06  Score=77.04  Aligned_cols=268  Identities=13%  Similarity=0.109  Sum_probs=173.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHh-h---cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLT-E---SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~---~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      |.|..+|.+.  +...+..|+.+|.+++.++.+.-+.=. .   .-.+|.++++.+  +.++.++..|+.++..+-... 
T Consensus       131 p~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~-  205 (885)
T KOG2023|consen  131 PQLCELLDSP--DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQ-  205 (885)
T ss_pred             HHHHHHhcCC--cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecC-
Confidence            5677788765  566778899999999987765433211 1   135788889999  789999999999987754332 


Q ss_pred             ccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ++..+.. ...++.+-.+-.+.++++|++.|.++..|......|..-.- .++|+.++...++.++ ++.-+|+.....+
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE-~VALEACEFwla~  283 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDE-NVALEACEFWLAL  283 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcch-hHHHHHHHHHHHH
Confidence            2222222 33455555555667999999999999999866544444333 5899999999998888 8999999999999


Q ss_pred             cCCCchhHHHHhc--CchHHHHHHH----------h---hh-----HHH------------H------------------
Q 017402          245 TSFPENRKRVVSC--GAVPILMRLA----------D---AG-----LER------------A------------------  274 (372)
Q Consensus       245 ~~~~~~~~~i~~~--g~v~~L~~ll----------~---~~-----~e~------------a------------------  274 (372)
                      +..+-.+..+...  ..||.|+.-+          .   ++     +|.            .                  
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            9888554444432  3556555422          1   00     000            0                  


Q ss_pred             -HHHHHHHhCCHhH---------HHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--ChhHH
Q 017402          275 -VEVLSILVKCKEG---------REEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDI  342 (372)
Q Consensus       275 -~~~L~~L~~~~~~---------~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~~~~  342 (372)
                       ...=+||-++...         ++++..  -.+|.|-+.|.+..=.+++.++-+|..++.+.   -+-|...  -.++.
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip~  438 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIPF  438 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHHH
Confidence             0000122222111         112222  13444444454455578899999999887542   2222221  27899


Q ss_pred             HHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          343 CMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       343 l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      |+.++.+-.+-||.-.+|.|+.++.+.
T Consensus       439 l~~~L~DKkplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  439 LLSLLDDKKPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             HHHHhccCccceeeeeeeeHhhhhhhH
Confidence            999999999999999999998776653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00013  Score=73.82  Aligned_cols=244  Identities=16%  Similarity=0.120  Sum_probs=155.4

Q ss_pred             CCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHhhcCCC--------------hhHHHHHHHHHhcCCCC
Q 017402          100 SSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLKIHSDG--------------FTLQEKALSLLLNLSLD  163 (372)
Q Consensus       100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~--------------~~~~~~a~~~L~~l~~~  163 (372)
                      .-++..|..|+..|..+++.-+...+.....  -.++.++.++.....+              ..--..|.++|-.++.+
T Consensus       260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~  339 (1075)
T KOG2171|consen  260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH  339 (1075)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence            3456788899999998887544333333222  2344444444311011              11344556666666655


Q ss_pred             ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      =..+.  +-.-.++.+-.+|.+.+-.-|..+..+|..++... .+.++.....+++..++.|+++++ .++..|+.++..
T Consensus       340 L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~Dphp-rVr~AA~naigQ  415 (1075)
T KOG2171|consen  340 LGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDPHP-RVRYAALNAIGQ  415 (1075)
T ss_pred             CChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHh
Confidence            22222  11234566667777888999999999999987543 333344445788888899998888 999999999999


Q ss_pred             hcCC-CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhH-HHHHHhccchHH-HHHHHHhcCChhHHHh
Q 017402          244 LTSF-PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEG-REEMMRVSGCVG-VFVKMLKTGSSRAVQC  315 (372)
Q Consensus       244 L~~~-~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~-~L~~ll~~~~~~~~~~  315 (372)
                      ++.+ ....++-...-.++.|+..+++.     ..+|+.++-|++..-.+ .-.-.- ++.+. .+..+++++++.+++.
T Consensus       416 ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~  494 (1075)
T KOG2171|consen  416 MSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQ  494 (1075)
T ss_pred             hhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHH
Confidence            9985 34555555556777888888665     45677777777763222 111111 34565 5555667789999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhccc
Q 017402          316 SLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDDN  351 (372)
Q Consensus       316 a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~~  351 (372)
                      ++.+|..++....   ..++.  .-.++.|..++++.+
T Consensus       495 vvtaIasvA~AA~---~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  495 AVTAIASVADAAQ---EKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             HHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHhCCC
Confidence            9999999885422   22322  236888888888765

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=3.4e-05  Score=67.01  Aligned_cols=195  Identities=15%  Similarity=0.117  Sum_probs=137.3

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402          134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG  212 (372)
Q Consensus       134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~  212 (372)
                      ..++.+|.  +.++.++..|..-+.+++.. ..+.... +.-.++.+.+++....+  ...|+.+|.|++.....+..+.
T Consensus         6 ~elv~ll~--~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLH--SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHhc--cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            45788888  88999999999999998766 3332221 24577888888876555  6778999999998888888887


Q ss_pred             cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH---h----cCchHHHHHHHhhh------HHHHHHHHH
Q 017402          213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV---S----CGAVPILMRLADAG------LERAVEVLS  279 (372)
Q Consensus       213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~---~----~g~v~~L~~ll~~~------~e~a~~~L~  279 (372)
                      ..  .+..++.++.+... ......+.+|.||++.++....+.   .    .|.+.......+.+      -.....++.
T Consensus        81 ~~--~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   81 QD--LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HH--HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            73  89999999988866 788899999999999887655443   2    33444444444443      356789999


Q ss_pred             HHhCCHhHHHHHHhccchHHHHHHHHhcCChhHH-HhHHHHHHHHhcCCHHHHHHHHhc
Q 017402          280 ILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAV-QCSLFTLSCLCCCSQEICGDSRKE  337 (372)
Q Consensus       280 ~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~  337 (372)
                      ||+..+.||..+....-........+...+..+| ...+++|.|+|.. ......++..
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd-~~~h~~lL~e  215 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFD-AKLHEVLLDE  215 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhcc-chhHHHHhcc
Confidence            9999999999998833222222222233334444 5778899998765 4444555443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=3.5e-05  Score=77.64  Aligned_cols=225  Identities=14%  Similarity=0.102  Sum_probs=139.1

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccc
Q 017402           94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVA  172 (372)
Q Consensus        94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~  172 (372)
                      +.|.+  .+...|..|+.+|..++.+..+.-.... ..+++.++..|.  +.++.+|..|+.+++.++.+ ...-..-..
T Consensus       355 ~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~  429 (1075)
T KOG2171|consen  355 AMLQS--TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHH  429 (1075)
T ss_pred             HHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence            44444  3788899999999999987654332221 146777778888  88999999999999999988 333333344


Q ss_pred             cCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch-
Q 017402          173 EGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN-  250 (372)
Q Consensus       173 ~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~-  250 (372)
                      .-.++.|+..+.+ +++.++..|+.++.|++..........-..+.+..++.+|...+.+.+++.++.+|...+..-+. 
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~  509 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK  509 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence            6677889999876 57899999999999998654333222222356664555555555559999999999988753322 


Q ss_pred             -hHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhC--CHhHHHHHHhcc-chHHHHHHH---HhcCChhHHHhHHH
Q 017402          251 -RKRVVSCGAVPILMRLADAG-----LERAVEVLSILVK--CKEGREEMMRVS-GCVGVFVKM---LKTGSSRAVQCSLF  318 (372)
Q Consensus       251 -~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~--~~~~~~~i~~~~-g~i~~L~~l---l~~~~~~~~~~a~~  318 (372)
                       ..++  .-.+|.|...|...     ++...+.+..++.  ..-|++.+.... ..+..+..+   ....+...+.....
T Consensus       510 F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~  587 (1075)
T KOG2171|consen  510 FIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA  587 (1075)
T ss_pred             hHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence             2222  12556666666322     2222222222222  245566665531 234444444   22233444556565


Q ss_pred             HHHHHhc
Q 017402          319 TLSCLCC  325 (372)
Q Consensus       319 ~L~~l~~  325 (372)
                      ....+|+
T Consensus       588 ~warmc~  594 (1075)
T KOG2171|consen  588 FWARMCR  594 (1075)
T ss_pred             HHHHHHH
Confidence            6666665

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.28  E-value=9.1e-07  Score=75.32  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=57.2

Q ss_pred             ccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            9 FKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      +.||+|..++++|+.+ +|||+||..||...+....+.||.|....--...+.|+...+..++.+.+.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            8999999999999977 699999999999988877899999987543356788888888888887763

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=98.25  E-value=6.7e-07  Score=83.00  Aligned_cols=70  Identities=27%  Similarity=0.598  Sum_probs=55.6

Q ss_pred             CCCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc-cHHHHHHHHHHhc
Q 017402            3 TQFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP-NHALRSLISNFTR   74 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~-n~~l~~~i~~~~~   74 (372)
                      ..+++++.||+|..++.+|+.. .|||.||+.|+..|... ...||.|+.... .....+ ....++.+..+..
T Consensus        16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~-~~~~~~~~~~~~~~~~~l~i   87 (391)
T KOG0297|consen   16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELT-QAEELPVPRALRRELLKLPI   87 (391)
T ss_pred             CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccc-hhhccCchHHHHHHHHhccc
Confidence            3467889999999999999994 89999999999999987 889999988877 433333 4555665555543

>PTZ00429 beta-adaptin; Provisional

Probab=98.23  E-value=0.00048  Score=69.10  Aligned_cols=248  Identities=14%  Similarity=0.076  Sum_probs=154.4

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      ++.+..+.+.  +.+.|+=..-.|.+++..+++..-     -.+..+.+=+.  +.++.++..|+++|.++-..+ .-  
T Consensus        71 ~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~--d~Np~IRaLALRtLs~Ir~~~-i~--  138 (746)
T PTZ00429         71 VDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTT--NSSPVVRALAVRTMMCIRVSS-VL--  138 (746)
T ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcC--CCCHHHHHHHHHHHHcCCcHH-HH--
Confidence            4555555433  666666666666666665443211     12445555555  678889999999999875321 11  


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE  249 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  249 (372)
                         .-.++.+.+.+.+.++.+|+.|+.++..+-..+.  ..+.. .|.++.|.++|.+.+. .+..+|+.+|..+.....
T Consensus       139 ---e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~-~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        139 ---EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQ-QDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccc-cchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCc
Confidence               2245667788888999999999999999864332  33444 5899999999988777 999999999999986543


Q ss_pred             hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      ..- -...+.+..|+..+.+.    +-..+.+|   +.. +......   ...+..+...+++.++.+.-.|++++.++.
T Consensus       212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            221 12334555666666432    33344444   332 1111111   235677777788888888999999988887


Q ss_pred             cCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          325 CCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       325 ~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ... ++....+.. .+...++.++ ++++++|--+.+-|..+
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i  324 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHAL  324 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHH
Confidence            542 332222211 1234555553 45667777776666544

>PF05536 Neurochondrin: Neurochondrin

Probab=98.21  E-value=9.1e-05  Score=71.97  Aligned_cols=155  Identities=19%  Similarity=0.136  Sum_probs=123.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHH---HHHHhhcCCHHHHHHHHhhcC-----CChhHHHHHHHHHhcCC
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSAS---RRKLTESGAVSAVLNCLKIHS-----DGFTLQEKALSLLLNLS  161 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~L~~lL~~~~-----~~~~~~~~a~~~L~~l~  161 (372)
                      ++.+.+|+..  +.+.|.-++-.+.++...++..   ++.+.++=|.+.+-++|++..     +....+.-|+.+|..++
T Consensus         8 ~~c~~lL~~~--~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    8 EKCLSLLKSA--DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHhccC--CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4567788776  4677899999999999876633   445778766899999998421     33567899999999999


Q ss_pred             CCccccccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          162 LDDDNKVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       162 ~~~~~~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      .+++....=--.+.||.|++.+.+.+. ++...+...|..++..++++..+.+ .|+|+.|++.+.+..  ...+.|+.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~~~--~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPNQS--FQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHhCc--chHHHHHHH
Confidence            976654432225789999999988766 9999999999999999999999998 799999999998843  578999999


Q ss_pred             HHhhcCCCc
Q 017402          241 LYALTSFPE  249 (372)
Q Consensus       241 L~~L~~~~~  249 (372)
                      |.++.....
T Consensus       163 L~~Lls~~~  171 (543)
T PF05536_consen  163 LLNLLSRLG  171 (543)
T ss_pred             HHHHHHhcc
Confidence            999876443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.1e-06  Score=78.20  Aligned_cols=46  Identities=30%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             ccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +.|.||++-|.+=   +.++|+|.|+..||..|+.+....||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            5899999988743   368999999999999999987677999998766

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.14  E-value=8e-06  Score=49.72  Aligned_cols=41  Identities=20%  Similarity=0.175  Sum_probs=38.2

Q ss_pred             CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          327 SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       327 ~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ++++++.+++.|+++.|+.+++++++++++.|.++|++|..
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00031  Score=61.73  Aligned_cols=262  Identities=10%  Similarity=0.083  Sum_probs=172.8

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHH----HHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH
Q 017402          102 PLESKLESLTQLTKLSKRDSASR----RKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS  177 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~  177 (372)
                      +..++.-+.+.+..+..+.+.|.    ..++.+|.++.++..+.  ..+.++-..|...|..++.-+..-+.+......+
T Consensus        95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--geddeVAkAAiesikrialfpaaleaiFeSellD  172 (524)
T KOG4413|consen   95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GEDDEVAKAAIESIKRIALFPAALEAIFESELLD  172 (524)
T ss_pred             cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCC
Confidence            45566667777777666544332    23457899999999998  7889999999999999999888888888776655


Q ss_pred             HHH--HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402          178 RVV--AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV  255 (372)
Q Consensus       178 ~lv--~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~  255 (372)
                      .+-  .+-...+.-+|-.....+..+.+.......-....|.+..|..-++...+.-++.+++.....|+....+++.+.
T Consensus       173 dlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla  252 (524)
T KOG4413|consen  173 DLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA  252 (524)
T ss_pred             hHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence            543  222233455566666677766554432222233379999998888875554788899999999999999999999


Q ss_pred             hcCchHHHHHHHh---hh---HHHHHHHHH----HHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          256 SCGAVPILMRLAD---AG---LERAVEVLS----ILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       256 ~~g~v~~L~~ll~---~~---~e~a~~~L~----~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      +.|.|+.+..++.   ++   .-.++....    +..-.+..-+++++ ..-+++...+++...++...+.|..++..+-
T Consensus       253 QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilG  332 (524)
T KOG4413|consen  253 QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILG  332 (524)
T ss_pred             hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhcc
Confidence            9999999999883   33   222443333    33332322233333 1123555567777789999999999999887


Q ss_pred             cCCHHHHHHHHhcC--hhHHHHHHhhcccHHH-HHHHHHHHHHHh
Q 017402          325 CCSQEICGDSRKEG--VLDICMGLLEDDNEKV-RRNANNLIQTLS  366 (372)
Q Consensus       325 ~~~~~~~~~~~~~g--~~~~l~~ll~~~~~~v-~~~a~~~L~~l~  366 (372)
                      +. .+..+.+.+.|  ..+.++.-.-+.+... ++.+..+|..+.
T Consensus       333 Sn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  333 SN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             CC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            66 77778888776  3444443333332222 344555555443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.0013  Score=66.16  Aligned_cols=257  Identities=18%  Similarity=0.203  Sum_probs=171.6

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      .+.++-+...|... +++.++.-|+..+..+... .+.-..+++.|.+..|+.+|-   .-+..++.++.+|..|+...+
T Consensus      1770 ig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLH---S~PS~R~~vL~vLYAL~S~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCR-KHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLH---SQPSMRARVLDVLYALSSNGQ 1844 (2235)
T ss_pred             hcccHHHHHHHHHc-CCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHh---cChHHHHHHHHHHHHHhcCcH
Confidence            34455566677665 5778888899999988874 457888899998888999886   668899999999999998877


Q ss_pred             ccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhccccc--chhhhcc-----------------------------
Q 017402          166 NKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEV--NKATIGD-----------------------------  213 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~--~~~~i~~-----------------------------  213 (372)
                      .-..-.+.|++.-+..++-. .++..|.+++..+..|....-  .+..|.-                             
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            66666678888888877754 467777888888877754321  1111100                             


Q ss_pred             ----------------------------------------------------------------------------ccch
Q 017402          214 ----------------------------------------------------------------------------YPYA  217 (372)
Q Consensus       214 ----------------------------------------------------------------------------~~g~  217 (372)
                                                                                                  ..|.
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence                                                                                        0111


Q ss_pred             HHHHHHHhhcCCc-hHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHH
Q 017402          218 INALVSLLQNGKL-IREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEM  291 (372)
Q Consensus       218 i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i  291 (372)
                      ++.+++++..... ......-..++..|.. ++.-..++-..|.+|.++..+...    ...|+.+|..|+.+.-+.+++
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence            2222222222211 1122222233444444 334445555668888888877322    677999999999999999988


Q ss_pred             HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhc
Q 017402          292 MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLED  349 (372)
Q Consensus       292 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~  349 (372)
                      .. ..++..++..|+... ..--.|+.+|-.+-.... +....+++.|.++.|+.+++.
T Consensus      2085 A~-l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQ-LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             hc-cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            88 446666777776532 223377777777665433 666778899999999999974

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.10  E-value=2.9e-06  Score=51.70  Aligned_cols=40  Identities=28%  Similarity=0.386  Sum_probs=37.5

Q ss_pred             ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 017402          120 DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLS  161 (372)
Q Consensus       120 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~  161 (372)
                      ++++++.+++.|+++.|+++|+  +.+.++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence            4679999999999999999999  899999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.09  E-value=4.2e-05  Score=69.97  Aligned_cols=175  Identities=13%  Similarity=0.184  Sum_probs=134.3

Q ss_pred             ccccccCChHHHHHHHhcCChH--HHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          168 VGLVAEGAVSRVVAALRFGSPD--CRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~--~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      ..|...|+++.|++++..++.+  ++..++.+|..+.. .+|++.++. .| ...++.+.+....++.....+..|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            4555689999999999887654  58899999998753 578888877 34 6666666666666688899999999999


Q ss_pred             CCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC--CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402          246 SFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK--CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF  318 (372)
Q Consensus       246 ~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~--~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~  318 (372)
                      .+. +....++++|+++.++.-....    ..+++-+|.|.+.  +.+++..+++ ..+-+-|.-+-.+.++..+-+|+.
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHH
Confidence            965 5889999999999888766332    5678888888776  5678888888 567777777777778888899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCh---hHHHHHHh
Q 017402          319 TLSCLCCCSQEICGDSRKEGV---LDICMGLL  347 (372)
Q Consensus       319 ~L~~l~~~~~~~~~~~~~~g~---~~~l~~ll  347 (372)
                      +...++.. .+.-.++.+.|-   ++.++..+
T Consensus       330 AV~vlat~-KE~E~~VrkS~TlaLVEPlva~~  360 (832)
T KOG3678|consen  330 AVAVLATN-KEVEREVRKSGTLALVEPLVASL  360 (832)
T ss_pred             HHhhhhhh-hhhhHHHhhccchhhhhhhhhcc
Confidence            99988876 677677777773   44444443

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.06  E-value=5.8e-06  Score=57.65  Aligned_cols=44  Identities=27%  Similarity=0.625  Sum_probs=32.1

Q ss_pred             ccCCcccCCC-cee-cCCchHhhHHHHHHHHhc--CCCCCCCCCCCCC
Q 017402           11 CPISLEIMSD-PVI-LSSGHTFDRASIQRWLDS--GHRTCPITKLPLP   54 (372)
Q Consensus        11 C~ic~~~~~~-Pv~-~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~   54 (372)
                      ||.|...-.+ |++ -.|+|.|+..||.+|+.+  ++.+||.||++..
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            4444443323 544 479999999999999985  3579999998765

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.05  E-value=0.0006  Score=64.91  Aligned_cols=226  Identities=16%  Similarity=0.139  Sum_probs=152.8

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCC-ccccccccc-cCC
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLD-DDNKVGLVA-EGA  175 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~-~~~~~~i~~-~g~  175 (372)
                      .+.++..+|++.|.|....++..|+.+.+.|+.+.+++.|+...   .+.++.-...++|.-++.. .+.+..+++ .++
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~  123 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG  123 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence            46788999999999999999999999999999999999999531   2678888899999887654 555655555 588


Q ss_pred             hHHHHHHHhc-----------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-------C-c
Q 017402          176 VSRVVAALRF-----------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-------K-L  230 (372)
Q Consensus       176 i~~lv~~L~~-----------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~-~  230 (372)
                      +..++..|..                 .+......+..+++|+......... ....+.++.|+.++..-       . .
T Consensus       124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            8888887732                 1233456688899999766543332 12235666666665422       1 1


Q ss_pred             hHHHHHHHHHHHhhcCCC-ch-------hHH----HHhcCchHHHHHHHhhh---------HHH---HHHHHHHHhCC-H
Q 017402          231 IREKKEAATALYALTSFP-EN-------RKR----VVSCGAVPILMRLADAG---------LER---AVEVLSILVKC-K  285 (372)
Q Consensus       231 ~~~~~~a~~aL~~L~~~~-~~-------~~~----i~~~g~v~~L~~ll~~~---------~e~---a~~~L~~L~~~-~  285 (372)
                      ......+..+|.|+=... ..       ...    ......+..|+.+|+..         .+.   .+.+|..++.. .
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~  282 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR  282 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence            256778888888872210 01       101    11223567788888543         122   46777777775 3


Q ss_pred             hHHHHHHh---------------ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          286 EGREEMMR---------------VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       286 ~~~~~i~~---------------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                      ..|+.+..               ....-..|++++.+..+.++..+...|+.+|..+
T Consensus       283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            33443332               2345678999998877999999999999999653

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.03  E-value=0.0012  Score=59.98  Aligned_cols=236  Identities=17%  Similarity=0.134  Sum_probs=166.6

Q ss_pred             CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-------cCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402          132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-------EGAVSRVVAALRFGSPDCRAIAATIITSLAVV  204 (372)
Q Consensus       132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~  204 (372)
                      .+..++.++.. ...++.....+..+-.+-..+..+..+..       .-.-...+.+|..++.-+...+.+++..++..
T Consensus        66 ~v~~fi~LlS~-~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSH-IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhch-hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            45666777763 23456677777777665555544443332       22367788899888888888899999999876


Q ss_pred             ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHH
Q 017402          205 EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVL  278 (372)
Q Consensus       205 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L  278 (372)
                      ...+....+..=....|-..+++..+.+....|+++|-.+...++.|..++.+.++..++..+.+.      +=..+..+
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            654444333111233344445553333788899999999999999999999999999999999432      34578888


Q ss_pred             HHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH------HHHHHHHhcChhHHHHHHhhc--
Q 017402          279 SILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ------EICGDSRKEGVLDICMGLLED--  349 (372)
Q Consensus       279 ~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~--  349 (372)
                      +.|..++...+.+ ...+.++.|..+++. ..+++.+-.+.++.|++..++      +....|+..++.+.+-.+.+-  
T Consensus       225 WlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             HHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            9999988888777 447899999999976 467888899999999987764      555677777776666666554  


Q ss_pred             ccHHHHHHHHHHHHHHhcCC
Q 017402          350 DNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       350 ~~~~v~~~a~~~L~~l~~~~  369 (372)
                      +++++...-..+-..|.++.
T Consensus       304 sDEDL~~di~~L~e~L~~sv  323 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSV  323 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHH
Confidence            46777776666666665543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.02  E-value=4e-05  Score=55.42  Aligned_cols=88  Identities=28%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG  212 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~  212 (372)
                      |+.|++.|.+ +.++.++..++.+|..+.          ....++.|+.+++++++.++..|+.+|..+.          
T Consensus         1 i~~L~~~l~~-~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQN-DPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHT-SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            6789999943 689999999999999552          2255899999999999999999999999872          


Q ss_pred             cccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          213 DYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      . ..+++.|.+++.++++..++..|..+|+
T Consensus        60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 D-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            2 4689999999998776456888888874

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.00  E-value=0.001  Score=58.21  Aligned_cols=222  Identities=19%  Similarity=0.138  Sum_probs=157.7

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccc-cCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINAL  221 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~L  221 (372)
                      -+.-.+.-|.+++.++....+.|..+-. ...-..+++.+++  ++.+++-+..-.++-++...+..+.|-..-..|.-|
T Consensus       161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3455788999999999999887765443 4456678888876  678899999999999998777665665544688888


Q ss_pred             HHHhhcCCchHHHHHHHHHHHhhcC-CC-chhHHHHhcCchHHHHHHHhhh---HHHHH-------HHH-----------
Q 017402          222 VSLLQNGKLIREKKEAATALYALTS-FP-ENRKRVVSCGAVPILMRLADAG---LERAV-------EVL-----------  278 (372)
Q Consensus       222 v~ll~~~~~~~~~~~a~~aL~~L~~-~~-~~~~~i~~~g~v~~L~~ll~~~---~e~a~-------~~L-----------  278 (372)
                      +.+.+...-..+..-++..+.|++. .+ .....+.-.|-+..-++.|...   .|...       ..|           
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            8888875433788889999999887 32 3445555556566666666222   11111       111           


Q ss_pred             ---HHHhC--------------CHhHHHHHHhc-cchHHHHHHHHhcCChh-HHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402          279 ---SILVK--------------CKEGREEMMRV-SGCVGVFVKMLKTGSSR-AVQCSLFTLSCLCCCSQEICGDSRKEGV  339 (372)
Q Consensus       279 ---~~L~~--------------~~~~~~~i~~~-~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~  339 (372)
                         ..|-.              ...+.+.+.+. -..+..|.++++...+. ...-|+.=+..+....|+....+.+-|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence               11100              12333344442 23578889999886655 4467777788888888999999999999


Q ss_pred             hHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          340 LDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       340 ~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      =+.+++++.+++++||-.|..++..+-
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999999987653

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.00091  Score=67.14  Aligned_cols=141  Identities=17%  Similarity=0.169  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhhcChHHHHHHhhc----CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          105 SKLESLTQLTKLSKRDSASRRKLTES----GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       105 ~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      -..-++.+|+|+...+++....+...    |.-+.+...|+. .+++.++..|+.++..+..+.+.-..+++.|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence            34568999999999888777766543    666777777775 3788899999999999999999989999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      .+| ++-+..|..+..+|+.|+++.+..+...+ .|++..+..++-.....+.+..|+..+..|..++
T Consensus      1820 ~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLL-HSQPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            998 55788899999999999988876666666 5888888877766555589999999999887654

>PTZ00429 beta-adaptin; Provisional

Probab=97.97  E-value=0.0034  Score=63.11  Aligned_cols=249  Identities=16%  Similarity=0.103  Sum_probs=158.1

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHH-HHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLT-KLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD  164 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~  164 (372)
                      ..+..++-..|.+.  +...+.++++.+- .++.+.+ .      ..+.+.+++++.  +.+.+++....-.|.+.+...
T Consensus        31 kge~~ELr~~L~s~--~~~~kk~alKkvIa~mt~G~D-v------S~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~~~   99 (746)
T PTZ00429         31 RGEGAELQNDLNGT--DSYRKKAAVKRIIANMTMGRD-V------SYLFVDVVKLAP--STDLELKKLVYLYVLSTARLQ   99 (746)
T ss_pred             cchHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCC-c------hHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcccC
Confidence            44567788888765  6677788887654 4444322 2      224555667777  788899998888888887643


Q ss_pred             cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          165 DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       165 ~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ....    --.+..+.+=+.+.++.+|..|++++.++-.    .. +.+  -.++.+.+.+.+.++ -+++.|+.++..+
T Consensus       100 pela----lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~-i~e--~l~~~lkk~L~D~~p-YVRKtAalai~Kl  167 (746)
T PTZ00429        100 PEKA----LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SS-VLE--YTLEPLRRAVADPDP-YVRKTAAMGLGKL  167 (746)
T ss_pred             hHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HH-HHH--HHHHHHHHHhcCCCH-HHHHHHHHHHHHH
Confidence            2211    1235666777777899999999999988742    11 222  366777777877766 9999999999999


Q ss_pred             cCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          245 TSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       245 ~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      ...+.  ..+.+.|.++.|.++|.+.    .-+|+.+|..+......+-.+.  .+.+..|+..+...++-.+-..+.+|
T Consensus       168 y~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        168 FHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELL  243 (746)
T ss_pred             HhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            76433  2344667888999988544    6778888888876433222222  23566677777666666666555555


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      ..   ..|....+.  ..++..+...+++.|+-|--.|.+++-.+.
T Consensus       244 ~~---y~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        244 AA---QRPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             Hh---cCCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            33   323221111  234555566666666666666666554443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=4.1e-06  Score=73.67  Aligned_cols=47  Identities=28%  Similarity=0.659  Sum_probs=39.8

Q ss_pred             CCccccCCccc-CCCc------------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEI-MSDP------------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~-~~~P------------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++-.|.||++- |+.|            -.++|||.++-.|+..|+.+ ..+||.||.++-
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i  345 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI  345 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence            56789999986 5544            67899999999999999986 778999999843

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=1.8e-05  Score=73.50  Aligned_cols=269  Identities=14%  Similarity=0.107  Sum_probs=169.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc--c
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN--K  167 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~--~  167 (372)
                      +.|++.|.++  +..+..-+...+.|+.-.-...+..|.+.|+|..|+.++.  +.+..+|.+..+.|..+..+.++  +
T Consensus       434 elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~--sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         434 ELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM--SKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             HHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh--cchhhhhhcchhhhhhhhhcCcchhh
Confidence            3456666543  2233444566777777554457999999999999999999  78889999999999999888444  4


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc----cchhhhc---cccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE----VNKATIG---DYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~----~~~~~i~---~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      -.+...-++..++.+..+++-.++.+...+|.|+..+.    +.++...   -..-..+.|++.+...++ -.....+-.
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np-~~i~~~~yi  588 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNP-MEILEGCYI  588 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCc-hhhhhhHHH
Confidence            45667788999999999999999999999999997632    2333322   211267778888888777 445556777


Q ss_pred             HHhhcCCCchhHHHH-hc-CchHHHHHHHhhh-----------HHH----HHHHHHHHhCCHhHHHHHHhccchHHHHHH
Q 017402          241 LYALTSFPENRKRVV-SC-GAVPILMRLADAG-----------LER----AVEVLSILVKCKEGREEMMRVSGCVGVFVK  303 (372)
Q Consensus       241 L~~L~~~~~~~~~i~-~~-g~v~~L~~ll~~~-----------~e~----a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~  303 (372)
                      |.+++..+++...++ +. ..+..+-..|...           .++    ......++....++-...+-..   |.+=.
T Consensus       589 lv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~  665 (743)
T COG5369         589 LVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDN  665 (743)
T ss_pred             HHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccc
Confidence            888887777776665 33 4555555555221           111    1122223333211111111100   11111


Q ss_pred             HHhc---CChhHHHhHHHHHHHHhcC---C------HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          304 MLKT---GSSRAVQCSLFTLSCLCCC---S------QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       304 ll~~---~~~~~~~~a~~~L~~l~~~---~------~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +=+.   .+.+......+...++...   .      .+-++.+.+.|.-+.++.+...++..||+++..+|..++
T Consensus       666 ~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         666 MKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             cccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            1011   1222333444444443321   1      144566788899999999998999999999999998775

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.4e-06  Score=71.65  Aligned_cols=46  Identities=24%  Similarity=0.404  Sum_probs=41.7

Q ss_pred             ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|+||.+.+.-||.++|+|.||.-||.-....+..+||+||.++.
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            4699999999999999999999999998866666778999999987

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.95  E-value=5.4e-06  Score=66.38  Aligned_cols=46  Identities=22%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .|.|.||...++.||+..|||.||..|..+-... ...|-+|+....
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence            5899999999999999999999999998765554 567999987654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=6.7e-06  Score=69.57  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDS-GHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~-~~~~CP~c~~~~~   54 (372)
                      -.....||+|.+.-..|.++- |||.||+.|+..-+.. ..++||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            345678999999999998865 9999999999887653 3679999998765

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=5.1e-06  Score=76.13  Aligned_cols=70  Identities=29%  Similarity=0.552  Sum_probs=53.9

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHhcC
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQP----SLIPNHALRSLISNFTRT   75 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~~   75 (372)
                      +..+|.|-+|...+.+||+++|||+||..|+.+.... ...||.||..+....    ....|+....++..|+..
T Consensus        81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            4678999999999999999999999999999996664 667999999887211    112345555677666653

>TIGR02270 conserved hypothetical protein

Probab=97.91  E-value=0.0028  Score=59.34  Aligned_cols=56  Identities=11%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .++.|..+++..  .++..++.+|..+-.           ...++.|+..+.+..  +++.|..+++.++.
T Consensus       241 a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       241 AQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            455555555442  255555555554322           235677777665433  88888888877764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.87  E-value=2.5e-05  Score=71.91  Aligned_cols=178  Identities=20%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCccHHHH-HHHHHHhcCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS----GHRTCPITKLPLPDQPSLIPNHALR-SLISNFTRTPLPKP   80 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~----~~~~CP~c~~~~~~~~~~~~n~~l~-~~i~~~~~~~~~~~   80 (372)
                      ..+..|.+|.+.-.||+...|.|+||+.|+.+++..    .+-+||.|...++ .....  +.+. .-.+.|+..     
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls-iDlse--~alek~~l~~Fk~s-----  605 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS-IDLSE--PALEKTDLKGFKAS-----  605 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc-ccccc--hhhhhcchhhhhhH-----
Confidence            356789999999999999999999999999888752    3468999998887 33221  1121 222223222     


Q ss_pred             CCCCCCCCchhHHHHhhccCCChHHHHHHHHH-HHHHhhcChHHHHHHhhcCCHHHHHHHH----hhc---------CCC
Q 017402           81 QLEHANPNPQTLISVLTSKSSPLESKLESLTQ-LTKLSKRDSASRRKLTESGAVSAVLNCL----KIH---------SDG  146 (372)
Q Consensus        81 ~~~~~~~~~~~li~~L~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~~---------~~~  146 (372)
                                +++..++-+.--...+.+|+.. |..+-..+- ..+.|+=..+. .+++++    ...         +-+
T Consensus       606 ----------SIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~-t~KsIVFSQFT-SmLDLi~~rL~kaGfscVkL~GsMs  673 (791)
T KOG1002|consen  606 ----------SILNRINMDDWQSSTKIEALVEELYFLRERDR-TAKSIVFSQFT-SMLDLIEWRLGKAGFSCVKLVGSMS  673 (791)
T ss_pred             ----------HHhhhcchhhhcchhHHHHHHHHHHHHHHccc-chhhhhHHHHH-HHHHHHHHHhhccCceEEEeccCCC
Confidence                      3455554332123445666643 444444333 33333222211 122222    211         223


Q ss_pred             hhHHHHHHHHHhcCCCCcccccccc--ccCChHHHHHHHh-----c--CChHHHHHHHHHHHHhccccc
Q 017402          147 FTLQEKALSLLLNLSLDDDNKVGLV--AEGAVSRVVAALR-----F--GSPDCRAIAATIITSLAVVEV  206 (372)
Q Consensus       147 ~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~lv~~L~-----~--~~~~~~~~a~~~L~~ls~~~~  206 (372)
                      +..+..+   |.++..+.+.+.-++  ++||+..=+.--+     +  -++.+.-+|..-+..+.....
T Consensus       674 ~~ardat---ik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rP  739 (791)
T KOG1002|consen  674 PAARDAT---IKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRP  739 (791)
T ss_pred             hHHHHHH---HHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccc
Confidence            4444444   445555666666555  3666543322211     1  267777777766666654443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=7.4e-06  Score=70.13  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHH
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS   67 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~   67 (372)
                      .|.|-||.+.|.+||+..|||+||..|-...+.. ...|++|.+...  ..+.+...+..
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~--g~~~~akeL~~  297 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH--GSFNVAKELLV  297 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc--cccchHHHHHH
Confidence            4789999999999999999999999998777664 457999988765  44444444443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.0032  Score=59.53  Aligned_cols=255  Identities=20%  Similarity=0.190  Sum_probs=135.8

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      |-.+|++.  .+.+..++++.+..++..+  ....+.+. .|..|-.+|+  +.....+-.|+++|..|+.....+..+.
T Consensus       269 L~~wls~k--~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~--s~rv~~rFsA~Riln~lam~~P~kv~vc  341 (898)
T COG5240         269 LNSWLSDK--FEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLK--STRVVLRFSAMRILNQLAMKYPQKVSVC  341 (898)
T ss_pred             HHHHhcCc--chhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHh--cchHHHHHHHHHHHHHHHhhCCceeeec
Confidence            33445443  4788899999999988754  13333332 4677777888  7788899999999999998765555444


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      +.    .+=.++.+.+..+-.+|...|..-.. +++-..      .+..+..++.+-++ ..+.-+..++..||..-+.+
T Consensus       342 N~----evEsLIsd~Nr~IstyAITtLLKTGt-~e~idr------Lv~~I~sfvhD~SD-~FKiI~ida~rsLsl~Fp~k  409 (898)
T COG5240         342 NK----EVESLISDENRTISTYAITTLLKTGT-EETIDR------LVNLIPSFVHDMSD-GFKIIAIDALRSLSLLFPSK  409 (898)
T ss_pred             Ch----hHHHHhhcccccchHHHHHHHHHcCc-hhhHHH------HHHHHHHHHHhhcc-CceEEeHHHHHHHHhhCcHH
Confidence            32    23333444455554444444443321 111111      12222222222222 23333333333333321111


Q ss_pred             ---------HHHHhcCc-------hHHHHHHHhh---hHHHHHHHHHHHhCCHhHHHHHHh------ccc--------hH
Q 017402          252 ---------KRVVSCGA-------VPILMRLADA---GLERAVEVLSILVKCKEGREEMMR------VSG--------CV  298 (372)
Q Consensus       252 ---------~~i~~~g~-------v~~L~~ll~~---~~e~a~~~L~~L~~~~~~~~~i~~------~~g--------~i  298 (372)
                               ..+.+.|+       |+.+.+++..   .+|.|+..|+..-.+-+..+..+.      .+|        .+
T Consensus       410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv  489 (898)
T COG5240         410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV  489 (898)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence                     11123343       3444444422   266666555555443332222111      111        23


Q ss_pred             HHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          299 GVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      ..+..-+--.+.-++..|+.+|..++..-.   .......+...|-+.+.+.++++|..|..+|+.++..
T Consensus       490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         490 RHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence            333333323456778888888877765421   1222334566777888899999999999999998854

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.1e-05  Score=78.77  Aligned_cols=46  Identities=33%  Similarity=0.685  Sum_probs=41.4

Q ss_pred             CccccCCcccCCC-----ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSD-----PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~-----Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +-.|+||.+.|..     |..++|||.||..|+..|+.. ..+||.||..+.
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~  341 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY  341 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence            6789999999998     788999999999999999987 778999998554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.001  Score=63.67  Aligned_cols=271  Identities=13%  Similarity=0.076  Sum_probs=164.6

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      .|.+++..++.  ++..|..|+..+..+.....  ...+... .+++.+..+-.  +.++++|...+.+|..|..-...+
T Consensus       176 ipkfl~f~~h~--spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dk  249 (885)
T KOG2023|consen  176 IPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDK  249 (885)
T ss_pred             HHHHHHHHhCC--ChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHh
Confidence            37888888876  89999999998887765322  2222221 34555655555  789999999999998876543333


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHH-H----------
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREK-K----------  235 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~-~----------  235 (372)
                      ..=.-.++++-++....+.|.++...|+.....++..+-.+..+.. ....||.|++-+.-.+...+. +          
T Consensus       250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD  329 (885)
T KOG2023|consen  250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD  329 (885)
T ss_pred             cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence            2111256777777777778899999999999999987755555432 125677766433211100000 0          


Q ss_pred             --------------HHH-------------------HHHHhhcCCCc----hhHHHHhcCchHHHHHHHhhh--------
Q 017402          236 --------------EAA-------------------TALYALTSFPE----NRKRVVSCGAVPILMRLADAG--------  270 (372)
Q Consensus       236 --------------~a~-------------------~aL~~L~~~~~----~~~~i~~~g~v~~L~~ll~~~--------  270 (372)
                                    ...                   ..=|||=....    ....+.....++.++.+|+..        
T Consensus       330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~v  409 (885)
T KOG2023|consen  330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKV  409 (885)
T ss_pred             hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhh
Confidence                          000                   00122211111    112223444666666666332        


Q ss_pred             HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhh
Q 017402          271 LERAVEVLSILVKCKEGREEMMRV-SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLE  348 (372)
Q Consensus       271 ~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~  348 (372)
                      +|..+-+|+.++.+  +.+-+..+ ...++-|+++|.+..+.+|.-++++|...+..-- +-+.+...- ++.-|+.-+-
T Consensus       410 rEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-vL~~ll~~ll  486 (885)
T KOG2023|consen  410 REAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-VLEGLLRRLL  486 (885)
T ss_pred             hhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-HHHHHHHHHh
Confidence            66777777777652  22333332 2368888999999999999999988877665310 112222111 3444555555


Q ss_pred             cccHHHHHHHHHHHHHHhcC
Q 017402          349 DDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       349 ~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +++.+|+++|+.+...|-+.
T Consensus       487 D~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  487 DSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             cccHHHHHHHHHHHHHHHHh
Confidence            78999999999999887654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.73  E-value=0.0018  Score=61.65  Aligned_cols=257  Identities=15%  Similarity=0.132  Sum_probs=167.5

Q ss_pred             HHHHHHHhhcChHHHHHHhhcCCHHHHHHHH--------hhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHH
Q 017402          110 LTQLTKLSKRDSASRRKLTESGAVSAVLNCL--------KIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       110 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--------~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv  180 (372)
                      +..|+-+++ ++.+...+....++..|.++-        .....+.++...|+++|.|+... +..|..+.+.|+.+.++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            456666666 455777777766677776665        11145788999999999997666 77788888999999999


Q ss_pred             HHHhcC-----ChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc---------C-------CchHHHHHHH
Q 017402          181 AALRFG-----SPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN---------G-------KLIREKKEAA  238 (372)
Q Consensus       181 ~~L~~~-----~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~---------~-------~~~~~~~~a~  238 (372)
                      ..|+..     +.++.-...++|+-++... +.+..+....+++..++..+..         .       .+.....+++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999876     7888899999998887544 5666665545778877776531         0       1235677889


Q ss_pred             HHHHhhcCCCchhHHHHhcCchHHHHHHHhh----h---------HHHHHHHHHHHhCCHhHH--------HHH---Hhc
Q 017402          239 TALYALTSFPENRKRVVSCGAVPILMRLADA----G---------LERAVEVLSILVKCKEGR--------EEM---MRV  294 (372)
Q Consensus       239 ~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~----~---------~e~a~~~L~~L~~~~~~~--------~~i---~~~  294 (372)
                      +++.|+.........-...+.++.++.++..    .         .-+++.+|.|+-......        ..+   ...
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            9999997644322221233455555555410    1         445777777773211110        000   011


Q ss_pred             cchHHHHHHHHhc----CC--h--hHHHhHHHHHHHHhcCCHHHHHHHHh----------------cChhHHHHHHhhcc
Q 017402          295 SGCVGVFVKMLKT----GS--S--RAVQCSLFTLSCLCCCSQEICGDSRK----------------EGVLDICMGLLEDD  350 (372)
Q Consensus       295 ~g~i~~L~~ll~~----~~--~--~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~g~~~~l~~ll~~~  350 (372)
                      ...+..|+.+|..    ..  .  ..-.--+.+|..++..+...|+.+..                ...--.|+.++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2356677777643    11  1  22334556777777776666666654                23778899999987


Q ss_pred             cHHHHHHHHHHHHHHhc
Q 017402          351 NEKVRRNANNLIQTLSG  367 (372)
Q Consensus       351 ~~~v~~~a~~~L~~l~~  367 (372)
                      .+.+|..++.+|-.|.+
T Consensus       321 ~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CchHHHHHHHHHHHHHh
Confidence            79999999999977754

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.014  Score=51.60  Aligned_cols=244  Identities=16%  Similarity=0.173  Sum_probs=165.7

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA  182 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~  182 (372)
                      .-.|.+.+..+..+..-+++.....-+.|.+..|..=|+. ..+.-++..++.....|+..+-.++-+.+.|.|+.+..+
T Consensus       185 diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG-teDtLVianciElvteLaeteHgreflaQeglIdlicnI  263 (524)
T KOG4413|consen  185 DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG-TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI  263 (524)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence            3467777888888888888888888889999988888872 256678888999999999888889988999999999999


Q ss_pred             HhcC--ChHHHHHHHHHHHH----hcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402          183 LRFG--SPDCRAIAATIITS----LAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV  255 (372)
Q Consensus       183 L~~~--~~~~~~~a~~~L~~----ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~  255 (372)
                      +...  ++-.+..+......    .+..+-.-+.+.+ ..-+|+.-.+++...++ ...+.|.-++..|-++.++.+.+.
T Consensus       264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDp-daieaAiDalGilGSnteGadlll  342 (524)
T KOG4413|consen  264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDP-DAIEAAIDALGILGSNTEGADLLL  342 (524)
T ss_pred             hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCc-hHHHHHHHHHHhccCCcchhHHHh
Confidence            9653  34444433333332    2222212222222 11245555666666666 899999999999999999999888


Q ss_pred             hcCc--hHHHHH-HHhhh----HHHHHHHHHHHhCC---H-----hHHH------HHHhc------cchHHHHHHHHhcC
Q 017402          256 SCGA--VPILMR-LADAG----LERAVEVLSILVKC---K-----EGRE------EMMRV------SGCVGVFVKMLKTG  308 (372)
Q Consensus       256 ~~g~--v~~L~~-ll~~~----~e~a~~~L~~L~~~---~-----~~~~------~i~~~------~g~i~~L~~ll~~~  308 (372)
                      +.|-  ...++. ..+..    ++.++.+|.+++..   +     +|+.      .+...      -.-...+..+++..
T Consensus       343 kTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp  422 (524)
T KOG4413|consen  343 KTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP  422 (524)
T ss_pred             ccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC
Confidence            8764  233332 22221    67788888888762   1     1111      11110      01245566777778


Q ss_pred             ChhHHHhHHHHHHHHhcCCHHHHHHHH-hcChhHHHHHHhhc
Q 017402          309 SSRAVQCSLFTLSCLCCCSQEICGDSR-KEGVLDICMGLLED  349 (372)
Q Consensus       309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~~~~l~~ll~~  349 (372)
                      .+.++-.|.+.+..++.. |....+|. +.|.++..++....
T Consensus       423 fpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastE  463 (524)
T KOG4413|consen  423 FPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTE  463 (524)
T ss_pred             ChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchh
Confidence            899999999999999987 87776664 46777766655443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.56  E-value=0.00039  Score=60.14  Aligned_cols=200  Identities=16%  Similarity=0.143  Sum_probs=112.5

Q ss_pred             HHHHh--hccCCChHHHHHHHHHHHHHhhcC--hHHHHHHhhc--CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           92 LISVL--TSKSSPLESKLESLTQLTKLSKRD--SASRRKLTES--GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        92 li~~L--~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      +...|  ...+.+.+.|.+|+..|+.+..++  ......+.+.  ..+..+...+.  +....+...|+.++..++..-.
T Consensus         8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--d~Rs~v~~~A~~~l~~l~~~l~   85 (228)
T PF12348_consen    8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--DLRSKVSKTACQLLSDLARQLG   85 (228)
T ss_dssp             S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S---HH---HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHh
Confidence            34444  344468899999999999999876  3344444332  45556666666  5567788999999998876633


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccch-HHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYA-INALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ..-.-.-...++.|++.+.++..-++..|..+|..+...-.    . . ..+ ++.+...+.+.+. .++..++..|..+
T Consensus        86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~-~-~~~~~~~l~~~~~~Kn~-~vR~~~~~~l~~~  158 (228)
T PF12348_consen   86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----Y-S-PKILLEILSQGLKSKNP-QVREECAEWLAII  158 (228)
T ss_dssp             GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H----HHHHHHHHHHTT-S-H-HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----c-H-HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Confidence            22211235678888888888888899999999998875322    1 1 234 5566666666666 8888888888776


Q ss_pred             cCCCc-hhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          245 TSFPE-NRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       245 ~~~~~-~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      ...-. ....+-..+                                ..  ...++.+...+.+.++.+|+.|-.+++.+
T Consensus       159 l~~~~~~~~~l~~~~--------------------------------~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  159 LEKWGSDSSVLQKSA--------------------------------FL--KQLVKALVKLLSDADPEVREAARECLWAL  204 (228)
T ss_dssp             HTT-----GGG--HH--------------------------------HH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHccchHhhhcccc--------------------------------hH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            54222 111111000                                01  23566677777777888888888888887


Q ss_pred             hcCCHHHHHHH
Q 017402          324 CCCSQEICGDS  334 (372)
Q Consensus       324 ~~~~~~~~~~~  334 (372)
                      ....++....+
T Consensus       205 ~~~~~~~a~~~  215 (228)
T PF12348_consen  205 YSHFPERAESI  215 (228)
T ss_dssp             HHHH-HHH---
T ss_pred             HHHCCHhhccc
Confidence            66544444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=2.2e-05  Score=48.78  Aligned_cols=46  Identities=30%  Similarity=0.478  Sum_probs=39.1

Q ss_pred             ccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..|.||.+--.|.|...|||. .|..|-.+.|......||.||.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            579999998888889999995 6999987877767889999998765

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.52  E-value=0.00019  Score=43.42  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=35.8

Q ss_pred             HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402          122 ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL  162 (372)
Q Consensus       122 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~  162 (372)
                      +++..+++.|+++.|+++|.  +.+.+++..++++|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcC
Confidence            48889999999999999999  7899999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.51  E-value=0.00082  Score=48.42  Aligned_cols=81  Identities=35%  Similarity=0.451  Sum_probs=62.5

Q ss_pred             hHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH
Q 017402          176 VSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRV  254 (372)
Q Consensus       176 i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i  254 (372)
                      |+.|++.| +++++.+|..++.+|..+          .. ..+++.|+.++++++. .++..|+.+|..+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~~~-~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDEDP-MVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSSSH-HHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCCCH-HHHHHHHHHHHHhC---------
Confidence            67899999 778999999999999843          22 3689999999987766 99999999999872         


Q ss_pred             HhcCchHHHHHHHhhh-----HHHHHHHH
Q 017402          255 VSCGAVPILMRLADAG-----LERAVEVL  278 (372)
Q Consensus       255 ~~~g~v~~L~~ll~~~-----~e~a~~~L  278 (372)
                       ...+++.|.+++.++     +..|+.+|
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence             234888999988543     34455554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=97.51  E-value=0.0016  Score=54.24  Aligned_cols=116  Identities=16%  Similarity=0.051  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHhc--C--------------chHHHHHHHhhh----------HHHHHHHHHHHhCCH
Q 017402          232 REKKEAATALYALTSFPENRKRVVSC--G--------------AVPILMRLADAG----------LERAVEVLSILVKCK  285 (372)
Q Consensus       232 ~~~~~a~~aL~~L~~~~~~~~~i~~~--g--------------~v~~L~~ll~~~----------~e~a~~~L~~L~~~~  285 (372)
                      .....++..|+||+..++++..+.+.  .              .+..|++.+..+          -+....++.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            57788999999999999888866633  2              466777777331          567999999999999


Q ss_pred             hHHHHHHhcc-ch--HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh---cChhHHHHHHhh
Q 017402          286 EGREEMMRVS-GC--VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK---EGVLDICMGLLE  348 (372)
Q Consensus       286 ~~~~~i~~~~-g~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~g~~~~l~~ll~  348 (372)
                      ++|+.+.... +.  +..|+..+.+.|..-|.-++++|.|+|.. .+.-..+..   .++++.|+.-+-
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhcc
Confidence            9999999843 33  56777777777777778999999998866 555566655   356666666554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.004  Score=60.64  Aligned_cols=269  Identities=12%  Similarity=0.069  Sum_probs=170.5

Q ss_pred             hhHHHHhhccCCCh---HHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCc
Q 017402           90 QTLISVLTSKSSPL---ESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDD  164 (372)
Q Consensus        90 ~~li~~L~~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~  164 (372)
                      |+++..|.+...++   .+|..++.+|+.+|.+-. -....... .++-.++.-.++...+..++-.|+.+|.|- -...
T Consensus       128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~  206 (859)
T KOG1241|consen  128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK  206 (859)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence            77888877654332   477899999999997522 22333332 455666666655456788999999999883 2211


Q ss_pred             cccc-cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          165 DNKV-GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       165 ~~~~-~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .|-. ..-..=.++.+++.-.+++.+++..|..-|..+.... +.-..... ...+..-+..++++++ ++...+...=+
T Consensus       207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~~d-eValQaiEFWs  284 (859)
T KOG1241|consen  207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSDND-EVALQAIEFWS  284 (859)
T ss_pred             HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence            1111 1111223445566667788999999888888876544 33333333 3456666777888888 88888888777


Q ss_pred             hhcCCC-c---hhHHHHh---------------cCchHHHHHHHhhh--------------HHHHHHHHHHHhCCHhHHH
Q 017402          243 ALTSFP-E---NRKRVVS---------------CGAVPILMRLADAG--------------LERAVEVLSILVKCKEGRE  289 (372)
Q Consensus       243 ~L~~~~-~---~~~~i~~---------------~g~v~~L~~ll~~~--------------~e~a~~~L~~L~~~~~~~~  289 (372)
                      ++|..+ +   .-...++               .+++|.|+++|...              .-.|+.+.+..+++     
T Consensus       285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-----  359 (859)
T KOG1241|consen  285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-----  359 (859)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-----
Confidence            666421 1   0011111               15678888888221              12345555555553     


Q ss_pred             HHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       290 ~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .|+.+  +++-+-+-+++.+=+-++.|+.++..+-.+....+..-+..++++.++.+..+.+--+|..++|.|-.+.++
T Consensus       360 ~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  360 DIVPH--VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF  436 (859)
T ss_pred             cchhh--hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence            23331  344444455667778889999999998877445555556677899999999988999999999998665543

>TIGR02270 conserved hypothetical protein

Probab=97.49  E-value=0.034  Score=52.23  Aligned_cols=176  Identities=18%  Similarity=0.042  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG  212 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~  212 (372)
                      +..|+..|.  +.++.++..++.+|..+          ...+..+.|+.+|++.++.++..++.++..           .
T Consensus        88 ~~~L~~~L~--d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r  144 (410)
T TIGR02270        88 LRSVLAVLQ--AGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------H  144 (410)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------h
Confidence            677777777  66666777777777643          234456677777777777777766655555           1


Q ss_pred             cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHH
Q 017402          213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGR  288 (372)
Q Consensus       213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~  288 (372)
                      . ....+.|..+|++.+. .++..|+.+|..+-..          ..++.|...+.+.    +..++..+..+-.     
T Consensus       145 ~-~~~~~~L~~~L~d~d~-~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----  207 (410)
T TIGR02270       145 R-HDPGPALEAALTHEDA-LVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-----  207 (410)
T ss_pred             c-cChHHHHHHHhcCCCH-HHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----
Confidence            1 2345677777776655 7777787777766532          2444455555332    3444444433322     


Q ss_pred             HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       289 ~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                            ..++..+..+...........+..++.. ... +         ..++.|..++++..  ++..+..+|-.+..
T Consensus       208 ------~~A~~~l~~~~~~~g~~~~~~l~~~lal-~~~-~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       208 ------RLAWGVCRRFQVLEGGPHRQRLLVLLAV-AGG-P---------DAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             ------HhHHHHHHHHHhccCccHHHHHHHHHHh-CCc-h---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence                  2334444442222222222222222222 211 1         46777778887644  78888887766543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.48  E-value=5e-05  Score=68.31  Aligned_cols=36  Identities=25%  Similarity=0.577  Sum_probs=32.5

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHh
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD   40 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~   40 (372)
                      +++++.||+|..+|++|++++|||+.|+.|-.....
T Consensus         1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            468999999999999999999999999999876554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.01  Score=56.68  Aligned_cols=227  Identities=13%  Similarity=0.096  Sum_probs=140.8

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA  181 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~  181 (372)
                      .+.+|..|..+...+...-+.+..    .-.++.++.-+.  +..=..+..++..|..++...+.+....-..++|.+.+
T Consensus       229 ~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~--~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse  302 (569)
T KOG1242|consen  229 INKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLL--EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE  302 (569)
T ss_pred             chhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHH--HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH
Confidence            566776666655554432221111    112333333333  12224567888888888877777777777899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP  261 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~  261 (372)
                      .|-+..++++.++..+|..+...-+|.+ |   .-.+|.|+..+.++.-  -...+...|..=..-.     .+++-.+.
T Consensus       303 vl~DT~~evr~a~~~~l~~~~svidN~d-I---~~~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV~-----~V~~psLa  371 (569)
T KOG1242|consen  303 VLWDTKPEVRKAGIETLLKFGSVIDNPD-I---QKIIPTLLDALADPSC--YTPECLDSLGATTFVA-----EVDAPSLA  371 (569)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHhhccHH-H---HHHHHHHHHHhcCccc--chHHHHHhhcceeeee-----eecchhHH
Confidence            9999999999999999999998877777 2   3579999999988752  2334444443222111     12233455


Q ss_pred             HHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHH
Q 017402          262 ILMRLADAG--------LERAVEVLSILVKCKEGREEMMRV-SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG  332 (372)
Q Consensus       262 ~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  332 (372)
                      .++.+|..+        ...++.+..|+|.--+....+..- ...+|.|-+.+....|.+|.-+.++|..+-.. .....
T Consensus       372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~-~g~~~  450 (569)
T KOG1242|consen  372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER-LGEVS  450 (569)
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhhc
Confidence            556666333        556888999999865444444331 23566666666666789999999999766543 11111


Q ss_pred             HHHhcChhHHHHHHhhc
Q 017402          333 DSRKEGVLDICMGLLED  349 (372)
Q Consensus       333 ~~~~~g~~~~l~~ll~~  349 (372)
                      .   .+.++.+.+.+.+
T Consensus       451 f---~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  451 F---DDLIPELSETLTS  464 (569)
T ss_pred             c---cccccHHHHhhcc
Confidence            1   4455555555544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.47  E-value=0.00089  Score=57.91  Aligned_cols=176  Identities=15%  Similarity=0.075  Sum_probs=103.6

Q ss_pred             cCChHHHHHHHHHHHHhcccc---cchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          185 FGSPDCRAIAATIITSLAVVE---VNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      +.+=+.+..+..-|..+....   .....+.. ....+..+...+.+... .+...|+.++..++..-...-.-.-...+
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            346667777888888776655   22222221 12344567777777777 89999999999998643322211122467


Q ss_pred             HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccch-HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402          261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGC-VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR  335 (372)
Q Consensus       261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~-i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  335 (372)
                      |.|++.+.++    .+.+..+|..++..-..-      ... ++.+...+.+.++.++..++..|..+....+.....+.
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            8888888554    677778888887753311      112 44555566778999999999988887665442222222


Q ss_pred             h----cChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          336 K----EGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       336 ~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .    ..+++.+...+.+.+++||+.|..++..|..
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            2    3478889999999999999999999987753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00011  Score=61.70  Aligned_cols=73  Identities=40%  Similarity=0.619  Sum_probs=66.9

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL   77 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~   77 (372)
                      .+++.++|.|..++|++||+.+.|-+|.+.-|.+.+..-+..-|+++.+++ ...+.||..++..|+.|.+.+.
T Consensus       207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lt-e~q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLT-EYQLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCC-HHhhccchHHHHHHHHHHHhcc
Confidence            478889999999999999999999999999999999876777999999999 8899999999999999988753

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.013  Score=55.28  Aligned_cols=235  Identities=14%  Similarity=0.156  Sum_probs=146.2

Q ss_pred             CCCchhHHHHhhcc--CCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402           86 NPNPQTLISVLTSK--SSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL  162 (372)
Q Consensus        86 ~~~~~~li~~L~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~  162 (372)
                      +...++++.+|...  ..++..|.--+.=|.-+-. .| ..+.+.= ....+-|+.+|.  +.+++++..+=.+|.++-.
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~Ls--D~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLS--DSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence            44456777777653  2356677655555554443 33 2333322 245666778888  7888888777666655433


Q ss_pred             Cccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHH---
Q 017402          163 DDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAA---  238 (372)
Q Consensus       163 ~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~---  238 (372)
                      .-.+....++ ...++.++..+.++++.++..|..-+..+-... .+..+....|++..+++++.+..+...+..+.   
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            3222222223 567888999999999999998876666665443 33334343688899999988766522333222   


Q ss_pred             HHHHhhcCCCchhHHHHhcC-chHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHH
Q 017402          239 TALYALTSFPENRKRVVSCG-AVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAV  313 (372)
Q Consensus       239 ~aL~~L~~~~~~~~~i~~~g-~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~  313 (372)
                      ..|..+.+....... ++-| .+..|.+.+.++    +-.++.-+..|-....++-.... ......|+.-+.+.+..+-
T Consensus       317 ~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~sd~vv  394 (675)
T KOG0212|consen  317 GLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDRSDEVV  394 (675)
T ss_pred             HHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCchhHHH
Confidence            234555555444433 3333 567777777555    23355555555544444443333 6788999999999999999


Q ss_pred             HhHHHHHHHHhcCC
Q 017402          314 QCSLFTLSCLCCCS  327 (372)
Q Consensus       314 ~~a~~~L~~l~~~~  327 (372)
                      ..++..+.++|...
T Consensus       395 l~~L~lla~i~~s~  408 (675)
T KOG0212|consen  395 LLALSLLASICSSS  408 (675)
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999999999863

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.013  Score=53.77  Aligned_cols=210  Identities=15%  Similarity=0.126  Sum_probs=145.0

Q ss_pred             HHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc---cc-------hhhhccccchHHH
Q 017402          151 EKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE---VN-------KATIGDYPYAINA  220 (372)
Q Consensus       151 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~---~~-------~~~i~~~~g~i~~  220 (372)
                      ...+.-++.++.-++....+++.++++.++.+|.+.+.++.......|..|...+   ++       -+.++. .++++.
T Consensus       102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaL  180 (536)
T KOG2734|consen  102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLAL  180 (536)
T ss_pred             HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHH
Confidence            4455667778888998888999999999999999999999999999999987543   11       123344 578888


Q ss_pred             HHHHhhcCCc-----hHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHh-hh-----HHHHHHHHHHHhCCHh-H
Q 017402          221 LVSLLQNGKL-----IREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLAD-AG-----LERAVEVLSILVKCKE-G  287 (372)
Q Consensus       221 Lv~ll~~~~~-----~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~-~~-----~e~a~~~L~~L~~~~~-~  287 (372)
                      |+.-+..-++     .....+++..+-|+.. .++....+++.|.+.+|++-+. ..     ...|..+|+-+-.+.. +
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            8877754322     2455567778889887 5578888999999999998662 21     5568888888877655 4


Q ss_pred             HHHHHhccchHHHHHHHHh---cCC---hhHHH---hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHH
Q 017402          288 REEMMRVSGCVGVFVKMLK---TGS---SRAVQ---CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNA  358 (372)
Q Consensus       288 ~~~i~~~~g~i~~L~~ll~---~~~---~~~~~---~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a  358 (372)
                      +..... -.|+..+++-+.   ..+   ..-.+   +-...|..+-. .++++..+....+++.+.-+++. ....|-.|
T Consensus       261 ~~~~~~-l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sa  337 (536)
T KOG2734|consen  261 RKLLGP-LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSA  337 (536)
T ss_pred             hhhhcC-cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhH
Confidence            444444 557777766552   222   22233   44444444333 48999999887777776666665 44556666


Q ss_pred             HHHHHH
Q 017402          359 NNLIQT  364 (372)
Q Consensus       359 ~~~L~~  364 (372)
                      .+.|.-
T Consensus       338 lkvLd~  343 (536)
T KOG2734|consen  338 LKVLDH  343 (536)
T ss_pred             HHHHHH
Confidence            666643

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.41  E-value=0.0004  Score=41.95  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      ++.+..+++.|+++.|+.+++++++++++.|.++|+++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457788999999999999999999999999999999985

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.38  E-value=5.8e-05  Score=68.43  Aligned_cols=46  Identities=26%  Similarity=0.647  Sum_probs=37.7

Q ss_pred             CCCccccCCcccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .+--+||+|++.|.+-+    ++.|.|+|.-.|+..|+..   +||+||--.+
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence            34558999999998776    5679999999999999954   7999986443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0014  Score=61.27  Aligned_cols=196  Identities=9%  Similarity=0.114  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR  184 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~  184 (372)
                      -..++..|..+++.-.-.|..+.+..+++.|+++|.  ..+..+.--+...+.|+... +..+..+...|.|..++.++.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls--~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS--NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc--CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            334556667777654556788888999999999998  55555667777888887666 667888889999999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccccchh--hhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC----chhHHHHhcC
Q 017402          185 FGSPDCRAIAATIITSLAVVEVNKA--TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP----ENRKRVVSCG  258 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~~~~~--~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----~~~~~i~~~g  258 (372)
                      +.|...+.+..|++.++-.+..+.+  .... .-++..++.+..++.- .++...+..|+|+..+.    +.+..+++..
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~-~vq~q~lQilrNftc~~~knEkskdv~~K~~  561 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCF-KVQHQVLQILRNFTCDTSKNEKSKDVFIKAT  561 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCccc-ccHHHHHHHHHhcccccccccccceeEEecC
Confidence            8888999999999999987764442  3333 3578999999998888 89999999999987632    2344444432


Q ss_pred             c----hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHH
Q 017402          259 A----VPILMRLADAG----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKML  305 (372)
Q Consensus       259 ~----v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll  305 (372)
                      -    ...|++.+...    .+..+.+|.+++.+++..+.++. .+..+..+-++|
T Consensus       562 p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         562 PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            2    23344444332    55668888888887776665544 344555554444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.31  E-value=0.024  Score=52.09  Aligned_cols=190  Identities=22%  Similarity=0.225  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT  210 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~  210 (372)
                      ..++.+...+.  +.+..++..++..+..+.          ..-.++.+..++.+.+..+|..|+.+|..+-        
T Consensus        43 ~~~~~~~~~l~--~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------  102 (335)
T COG1413          43 EAADELLKLLE--DEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------  102 (335)
T ss_pred             hhHHHHHHHHc--CCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence            46788888888  667888888888844442          2446788999999999999998888666652        


Q ss_pred             hccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHH-HHHHHHHHhCCHhHH
Q 017402          211 IGDYPYAINALVSLLQN-GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLER-AVEVLSILVKCKEGR  288 (372)
Q Consensus       211 i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~-a~~~L~~L~~~~~~~  288 (372)
                        . ...++.|++++.. .+. .++..+..+|..+-...          ++.+++..+++.... +....  ......-|
T Consensus       103 --~-~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~--~~~~~~~r  166 (335)
T COG1413         103 --D-PEAVPPLVELLENDENE-GVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL--DAALLDVR  166 (335)
T ss_pred             --C-hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc--cchHHHHH
Confidence              2 4678899998885 555 89999999988776432          366777777543111 11111  00000111


Q ss_pred             HHH------HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          289 EEM------MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       289 ~~i------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      ...      ..+...++.+...+......++..|..+|..+...+         ..+.+.+...+.+.+..+|..+...|
T Consensus       167 ~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l  237 (335)
T COG1413         167 AAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL  237 (335)
T ss_pred             HHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence            111      112457888888888888888888888888877663         33456666666666777776666665


Q ss_pred             HHH
Q 017402          363 QTL  365 (372)
Q Consensus       363 ~~l  365 (372)
                      ..+
T Consensus       238 ~~~  240 (335)
T COG1413         238 GEI  240 (335)
T ss_pred             ccc
Confidence            443

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=5.7e-05  Score=63.74  Aligned_cols=55  Identities=25%  Similarity=0.454  Sum_probs=41.8

Q ss_pred             CCccccCCcccCCCc----------eecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcc
Q 017402            7 DDFKCPISLEIMSDP----------VILSSGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         7 ~~~~C~ic~~~~~~P----------v~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n   62 (372)
                      ++-.|.+|.+-+...          .+++|+|.|+..||.-|..-| ..+||.|++.+. ...+..|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd-l~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD-LKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh-HhhhccC
Confidence            456799999866544          378999999999999999654 569999998776 4443333

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.28  E-value=0.00043  Score=50.81  Aligned_cols=66  Identities=18%  Similarity=0.286  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccc
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLV  171 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~  171 (372)
                      |...++.|.+++..++.++..+++.||++.++..-.-++.+|-+++-|+.+|.||+.+ ++|++.|.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5678899999999999999999999999999988764467899999999999999877 77777544

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0014  Score=62.68  Aligned_cols=242  Identities=18%  Similarity=0.177  Sum_probs=150.1

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccccccCC
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGLVAEGA  175 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~~~g~  175 (372)
                      +..+|..|++.|..|..+.. .-+     -.....++.++  +.+..++..|+..+.-...-      .++-+.=....+
T Consensus       211 D~~Vrt~A~eglL~L~eg~k-L~~-----~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a  282 (823)
T KOG2259|consen  211 DFRVRTHAVEGLLALSEGFK-LSK-----ACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA  282 (823)
T ss_pred             CcchHHHHHHHHHhhccccc-ccH-----HHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence            66677777777777665332 111     13556778888  78888998887766443211      111111112457


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh--cC-------
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL--TS-------  246 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L--~~-------  246 (372)
                      +..+...+++.+-.+|-.|+.+|+.+-...  .+.|.+  ..=+.++.-++....  ..+..-....+.  ++       
T Consensus       283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--ee~i~Q--TLdKKlms~lRRkr~--ahkrpk~l~s~GewSsGk~~~ad  356 (823)
T KOG2259|consen  283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVS--EEIIQQ--TLDKKLMSRLRRKRT--AHKRPKALYSSGEWSSGKEWNAD  356 (823)
T ss_pred             HHHHHHHHhcCceeeeehHHHHhchHHHhH--HHHHHH--HHHHHHhhhhhhhhh--cccchHHHHhcCCcccCcccccc
Confidence            788888888889999999999988875322  112211  122233332222211  111111112222  00       


Q ss_pred             -----CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402          247 -----FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       247 -----~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                           .++.-..++..|+-..++.=|.+.    ++.|+..+..|+..   +..+..  .++.-|+.++.+.-..++..|.
T Consensus       357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---sP~FA~--~aldfLvDMfNDE~~~VRL~ai  431 (823)
T KOG2259|consen  357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---SPGFAV--RALDFLVDMFNDEIEVVRLKAI  431 (823)
T ss_pred             CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---CCCcHH--HHHHHHHHHhccHHHHHHHHHH
Confidence                 222344677888888888877655    56677777777653   333333  3688999999888889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .+|..|+.+      ..+++.-++.++..+.+.+.++|++...+|++.+-.
T Consensus       432 ~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~  476 (823)
T KOG2259|consen  432 FALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVS  476 (823)
T ss_pred             HHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            999999876      234444678888888888999999988888876543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.26  E-value=0.0036  Score=49.87  Aligned_cols=123  Identities=9%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             HHHHHhhcCCHHHHHHHHhhcCC----ChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC--ChHHHHHHHH
Q 017402          123 SRRKLTESGAVSAVLNCLKIHSD----GFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG--SPDCRAIAAT  196 (372)
Q Consensus       123 ~~~~i~~~g~i~~L~~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~--~~~~~~~a~~  196 (372)
                      +...|+..||+..|++++.++..    ..+....++.++..|..+.-......+...|..++..++..  +..+...|..
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            56788899999999999994322    24678889999999887765455677888999999999764  6888999999


Q ss_pred             HHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          197 IITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       197 ~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .|.++..+++.....+...=-++.|+..|+..+. +++.+|...+-.|..
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~-~iq~naiaLinAL~~  131 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ-EIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHh
Confidence            9999988776644444424578999999999766 899999888877764

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.26  E-value=0.00048  Score=44.80  Aligned_cols=55  Identities=31%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          188 PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      +.+|..|+++|.+++........-.. ..+++.|+.+|+++++ .++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDD-SVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence            36789999999998865543333333 4799999999998888 9999999999876

...

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.25  E-value=0.023  Score=49.01  Aligned_cols=218  Identities=15%  Similarity=0.091  Sum_probs=138.8

Q ss_pred             CChhHHHHHHHHHhcCCCC-cccccccc-ccCChHHHHHHH-------hcCC--h---HHHHHHHHHHHHhcccccchhh
Q 017402          145 DGFTLQEKALSLLLNLSLD-DDNKVGLV-AEGAVSRVVAAL-------RFGS--P---DCRAIAATIITSLAVVEVNKAT  210 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~-~~~~~~i~-~~g~i~~lv~~L-------~~~~--~---~~~~~a~~~L~~ls~~~~~~~~  210 (372)
                      .+++.++.|+.-|..--.. ++-...+- +-|.+..|++=+       ..++  .   .-.-+|...+..++.+++.+..
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            4577788888777664333 22222222 356666665433       1111  1   2234677788888999999988


Q ss_pred             hccccchHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCC--chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH
Q 017402          211 IGDYPYAINALVSLLQNGKL----IREKKEAATALYALTSFP--ENRKRVVSCGAVPILMRLADAG----LERAVEVLSI  280 (372)
Q Consensus       211 i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~  280 (372)
                      +.. +...-.|...|+..+.    ..++-.++++++.|...+  +....+.+.+.+|..++.++.|    +-.|..++..
T Consensus        87 Fl~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   87 FLK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            876 5655556666654321    257788999999999854  4667778999999999999777    3458888888


Q ss_pred             HhCCHhHHHHHHhccc-------hHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHH-H----Hh
Q 017402          281 LVKCKEGREEMMRVSG-------CVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM-G----LL  347 (372)
Q Consensus       281 L~~~~~~~~~i~~~~g-------~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~-~----ll  347 (372)
                      +-.++.|-..++.+..       ++..++..+ ...+++.-++..++-..++.+ +..+..+.+  .+|..+ +    -+
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~--~LP~~Lrd~~f~~~  242 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ--CLPDQLRDGTFSNI  242 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH--HS-GGGTSSTTTTG
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH--hCcHHHhcHHHHHH
Confidence            8888888887766433       333333333 447888889999999999976 888777664  233221 1    11


Q ss_pred             hcccHHHHHHHHHHHHHHh
Q 017402          348 EDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       348 ~~~~~~v~~~a~~~L~~l~  366 (372)
                      -.+++.+|+--..++.++.
T Consensus       243 l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  243 LKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             GCS-HHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHhc
Confidence            1247778887777777764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.013  Score=57.35  Aligned_cols=260  Identities=14%  Similarity=0.131  Sum_probs=159.1

Q ss_pred             hhccCCChHHHHHHHHHHHHHhhcChH-HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccccc
Q 017402           96 LTSKSSPLESKLESLTQLTKLSKRDSA-SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAE  173 (372)
Q Consensus        96 L~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~  173 (372)
                      ..+..++..+|..|+++|.+--..... +-...-..=+...+.+.-.  +.+.+++..|+.+|..+..- -+....-+..
T Consensus       181 mrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~  258 (859)
T KOG1241|consen  181 MRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ  258 (859)
T ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445778999999999874432111 1111111223344445555  68889999999999886432 3333333334


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccc-c----chhhh-------------ccccchHHHHHHHhhcCCc-----
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVE-V----NKATI-------------GDYPYAINALVSLLQNGKL-----  230 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~----~~~~i-------------~~~~g~i~~Lv~ll~~~~~-----  230 (372)
                      ..+..-+.-++++++++...+...-.+++..+ +    +.+..             ....+++|.|+++|...++     
T Consensus       259 alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~D  338 (859)
T KOG1241|consen  259 ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDD  338 (859)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccc
Confidence            45556666778889999998888777665432 1    01110             1112688899999876322     


Q ss_pred             -hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh----hh----HHHHHHHHHHHhCCHhHH--HHHHhccchHH
Q 017402          231 -IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD----AG----LERAVEVLSILVKCKEGR--EEMMRVSGCVG  299 (372)
Q Consensus       231 -~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~----~~----~e~a~~~L~~L~~~~~~~--~~i~~~~g~i~  299 (372)
                       =...+.|..+|.-++.       .++...++.++..+.    ++    ++.++.+...+-..++..  ..++  .++++
T Consensus       339 dWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp  409 (859)
T KOG1241|consen  339 DWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALP  409 (859)
T ss_pred             cCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhH
Confidence             1234445555544432       223345666666663    33    566777777666654332  2333  46999


Q ss_pred             HHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHH-HHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          300 VFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGD-SRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       300 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .++.++.+.+--++..+.+.|..++.+-++.+.- ..-.+.+..++.-+. +.+++-.+++|++-.|.+
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE  477 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence            9999999888888999999999999887754432 222334444444443 578889999999988764

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.23  E-value=0.001  Score=43.22  Aligned_cols=55  Identities=24%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      +.+|..|+.+|.+++...++...... ..+++.|+.+++++++.||.+|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46789999999998877666655544 44899999999999999999999999754

...

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00031  Score=60.30  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=41.1

Q ss_pred             cccCCc-ccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017402           10 KCPISL-EIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI   60 (372)
Q Consensus        10 ~C~ic~-~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~   60 (372)
                      .||+|. +.+.+|-    +-+|||+.|..|+.+.+..|...||.|...+. ...+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR-k~nfr   56 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR-KNNFR   56 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh-hcccc
Confidence            599999 4677773    23799999999999999999999999998887 54443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.027  Score=57.10  Aligned_cols=231  Identities=16%  Similarity=0.118  Sum_probs=160.0

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~  168 (372)
                      |-.++.|-+.    --|.+|+..|.++..-.+=.-..-..-|+-|.++++|+  +...+++-.-+-+=.. |+.++..+.
T Consensus       475 PiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ--S~a~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  475 PIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ--SSARELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             chHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc--cchHhhhhhHHHHHHHHHhcCchhHH
Confidence            3355666543    45788888888888766533333345699999999999  7777777655544433 788888899


Q ss_pred             cccccCChHHHHHHHhc-C--ChHHHHHHHHHHHHhcccccc-hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          169 GLVAEGAVSRVVAALRF-G--SPDCRAIAATIITSLAVVEVN-KATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~-~--~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      .+++.++-.-.++.|.. +  +++-|..|+-+|..+..+... ++.-.+ .+.|..-+..|.++..+-++.=.+.+|..|
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            99998888888888866 3  457777788888888766533 333344 578888888888864436666777888888


Q ss_pred             cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH----hHHHHHH-----------hccchH----HH
Q 017402          245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK----EGREEMM-----------RVSGCV----GV  300 (372)
Q Consensus       245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~----~~~~~i~-----------~~~g~i----~~  300 (372)
                      =.+ +++|=.=++.++...|+.+|.++    +..|+.+|..+..+.    +.+...+           ..+..+    -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            764 45666667889999999999655    556778888877741    1111111           012223    36


Q ss_pred             HHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          301 FVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       301 L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                      ++.+++.+++-++...+.+|..+..+.
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            777888899988888887888877653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.18  E-value=0.047  Score=46.40  Aligned_cols=175  Identities=14%  Similarity=0.149  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcccccchhhhcc--ccchHHHHHHHhhcCC-chHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHHH
Q 017402          192 AIAATIITSLAVVEVNKATIGD--YPYAINALVSLLQNGK-LIREKKEAATALYALTSFPE--NRKRVVSCGAVPILMRL  266 (372)
Q Consensus       192 ~~a~~~L~~ls~~~~~~~~i~~--~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~l  266 (372)
                      -++...|.-++++.+.+..+..  ..-.+.++++.-.... ..-.+-.++++|..|..+++  ....+...++||..++.
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            3556677777888888877755  1123333443333322 23688899999999998664  55667788999999999


Q ss_pred             Hhhh----HHHHHHHHHHHhCCHhHHHHHHhccc-------hHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHH
Q 017402          267 ADAG----LERAVEVLSILVKCKEGREEMMRVSG-------CVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDS  334 (372)
Q Consensus       267 l~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  334 (372)
                      ++.|    +-.|..++..+-.++.|-..++.+..       .+..++..+ +.++++...+++++...++.+ +..|..+
T Consensus       177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~aL  255 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAAL  255 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence            9877    44588899998888888887766432       233333333 347888899999999999976 8887776


Q ss_pred             Hhc---ChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          335 RKE---GVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       335 ~~~---g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ...   +.-+--...+-.++...|+--..+++++..
T Consensus       256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence            542   222222222223455556666666666543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.016  Score=55.45  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402          187 SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL  266 (372)
Q Consensus       187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l  266 (372)
                      .=..+..++..+..|+...+..-.... ..+||.|.+.|.+... ++++.+..+|.+++..-+|.. |.  -.+|.|++-
T Consensus       267 kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~  341 (569)
T KOG1242|consen  267 KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDA  341 (569)
T ss_pred             hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHH
Confidence            335567788888888766554444444 6899999999999888 999999999999998666655 21  256778877


Q ss_pred             Hhhh---HHHHHHHHHHHhCCHhHHHHHHh--ccchHHHHHHHHh----cCChhHHHhHHHHHHHHhcCC--HHHHHHHH
Q 017402          267 ADAG---LERAVEVLSILVKCKEGREEMMR--VSGCVGVFVKMLK----TGSSRAVQCSLFTLSCLCCCS--QEICGDSR  335 (372)
Q Consensus       267 l~~~---~e~a~~~L~~L~~~~~~~~~i~~--~~g~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~  335 (372)
                      +.++   ...++..|..        ..++.  ++-.+..++.+++    ..+...++.++.+.+|+|..-  +.......
T Consensus       342 l~dp~~~~~e~~~~L~~--------ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl  413 (569)
T KOG1242|consen  342 LADPSCYTPECLDSLGA--------TTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL  413 (569)
T ss_pred             hcCcccchHHHHHhhcc--------eeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence            7555   3444443322        22222  1223444444444    456777899999999999863  22222222


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                      .. ++|-+-..+.+..+++|.-|+++|-
T Consensus       414 ~~-Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  414 PS-LLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             HH-HhhHHHHHhcCCChhHHHHHHHHHH
Confidence            22 5555666666668999999999993

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.14  E-value=0.00059  Score=46.26  Aligned_cols=44  Identities=32%  Similarity=0.629  Sum_probs=32.2

Q ss_pred             cccCCcccCC----Ccee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402           10 KCPISLEIMS----DPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus        10 ~C~ic~~~~~----~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +||-|..-|.    -|+. -.|.|.|...||.+|+.. ...||.+++++.
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            4555554331    1333 259999999999999987 778999998765

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.13  E-value=0.039  Score=55.38  Aligned_cols=172  Identities=13%  Similarity=0.075  Sum_probs=112.2

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      ..++.|+...+|.++|++|...+..+...   +.+....  ...++.+++-|    ++.-.+..|++++..++..+-...
T Consensus       572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~---fgD~l~~eL~~~L~il~eRl----~nEiTRl~AvkAlt~Ia~S~l~i~  644 (1233)
T KOG1824|consen  572 CTLQRLKATDSDQEVKERAISCMGQIIAN---FGDFLGNELPRTLPILLERL----GNEITRLTAVKALTLIAMSPLDID  644 (1233)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHH----hchhHHHHHHHHHHHHHhccceee
Confidence            46778888878999999999888776642   2222211  12333333333    456788999999998877643222


Q ss_pred             cccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          169 GLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       169 ~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      .... ..+++.+...++......+.....++-.|..+...........-++..+-.++...+- .+...|...|..+...
T Consensus       645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdl-hvt~~a~~~L~tl~~~  723 (1233)
T KOG1824|consen  645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDL-HVTQLAVAFLTTLAII  723 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHhc
Confidence            1111 4578888888888777777777777776655432111111112355566666666555 7888999999999887


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh
Q 017402          248 PENRKRVVSCGAVPILMRLADAG  270 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~  270 (372)
                      ......-+..-.++.++.++.++
T Consensus       724 ~ps~l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  724 QPSSLLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             ccHHHHHHhhhhHHHHHHHhhCc
Confidence            77666666667888899988776

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.11  E-value=0.0094  Score=58.08  Aligned_cols=147  Identities=14%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH---HHHhcCchHHHHHHHhhh-HHH---HHHHHHHHhCCHhHH
Q 017402          216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRK---RVVSCGAVPILMRLADAG-LER---AVEVLSILVKCKEGR  288 (372)
Q Consensus       216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~---~i~~~g~v~~L~~ll~~~-~e~---a~~~L~~L~~~~~~~  288 (372)
                      .++...+..|++++. .++..|+..++.++..=.++.   .+...|.  .|.+.|... .|.   .+.+|..+...- +.
T Consensus       799 qi~stiL~rLnnksa-~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-gm  874 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSA-KVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-GM  874 (1172)
T ss_pred             HHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-cc
Confidence            355566677777776 899999998888775333332   2223333  355666444 333   223333222211 11


Q ss_pred             HHH-HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          289 EEM-MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       289 ~~i-~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      ..+ --..+.+|.|.-+|++..+++++++...+..||..+++....--..-+---|+++|++.+.++|++|..-+-.+.
T Consensus       875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            111 112468999999999999999999999999999988864322222335556788899999999999987655443

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00035  Score=46.89  Aligned_cols=49  Identities=27%  Similarity=0.522  Sum_probs=34.8

Q ss_pred             CCCccccCCcccCCC-ceec-CCchHhhHHHHHHHHhc--CCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSD-PVIL-SSGHTFDRASIQRWLDS--GHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~-Pv~~-~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~   54 (372)
                      +-+-.||-|.-.=.| |.++ .|.|.|...||.+|+..  +...||.||+.+.
T Consensus        29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            334456666554433 4443 59999999999999964  4568999998764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00042  Score=62.45  Aligned_cols=50  Identities=20%  Similarity=0.585  Sum_probs=40.4

Q ss_pred             CCCCccccCCcccCCCce-----e---cCCchHhhHHHHHHHHhcC------CCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSDPV-----I---LSSGHTFDRASIQRWLDSG------HRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv-----~---~~cgh~~c~~ci~~~~~~~------~~~CP~c~~~~~   54 (372)
                      -..+..|.||++...++.     .   .+|.|.||..||..|....      ...||.||....
T Consensus       158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            356889999999887776     3   4699999999999999532      257999998765

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.0016  Score=62.44  Aligned_cols=184  Identities=20%  Similarity=0.202  Sum_probs=123.5

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccc-------cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          175 AVSRVVAALRFGSPDCRAIAATIITSLAVVE-------VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      .....++++++++.++|..|..+++..+.-.       .+.....  ..++..+.+.+++.+- .++..|+++|..+-..
T Consensus       235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~v  311 (823)
T KOG2259|consen  235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDRSL-SVRVEAAKALGEFEQV  311 (823)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcCce-eeeehHHHHhchHHHh
Confidence            4677888998899999999887776554221       1112222  2577888888888877 8899999988877653


Q ss_pred             C-chhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHH--hC------------CHhHHHHHHhccchHHHHHHHHhcCC
Q 017402          248 P-ENRKRVVSCGAVPILMRLADAG---LERAVEVLSIL--VK------------CKEGREEMMRVSGCVGVFVKMLKTGS  309 (372)
Q Consensus       248 ~-~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L--~~------------~~~~~~~i~~~~g~i~~L~~ll~~~~  309 (372)
                      . +...+-.+.    .++.-+...   .+..-...++.  ++            .+++-..|+. .|+-..++.-+.+.-
T Consensus       312 See~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf  386 (823)
T KOG2259|consen  312 SEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEF  386 (823)
T ss_pred             HHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccc-ccccceeeeechHHH
Confidence            2 333333222    222222111   12222222222  11            1223345666 678888888887766


Q ss_pred             hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402          310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSM  371 (372)
Q Consensus       310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  371 (372)
                      -+++++|+..+..|+..+|.....     .++.|++.+.++-+.||.+|..+|+.+..+.++
T Consensus       387 ~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i  443 (823)
T KOG2259|consen  387 YEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI  443 (823)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee
Confidence            789999999999999988877655     678999999999999999999999999887554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=97.06  E-value=0.025  Score=52.41  Aligned_cols=240  Identities=18%  Similarity=0.171  Sum_probs=132.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +-++.-|. ++.+...|..++-.|..-+. ++.++..+...|.+..+++.+.....++..-..++.++.-++.+..+...
T Consensus        24 ~ylld~l~-~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   24 EYLLDGLE-SSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHhhcc-cCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            44666676 33466788889999988888 78899999999999999999963223333444555555666666555555


Q ss_pred             ccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc------C--CchHHHHHHHHH
Q 017402          170 LVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN------G--KLIREKKEAATA  240 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~------~--~~~~~~~~a~~a  240 (372)
                      +...+.+..+++++... ..+.....-      .....+-.++.+  ..+...-+.+..      .  ..-..+.-|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH--HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            55566777778888611 000000000      000000011111  111111111100      0  001233344444


Q ss_pred             HHhhc------------C---CCchhHHHHhcCchHHHHHHHhh----h----------------HHHHHHHHHHHhCC-
Q 017402          241 LYALT------------S---FPENRKRVVSCGAVPILMRLADA----G----------------LERAVEVLSILVKC-  284 (372)
Q Consensus       241 L~~L~------------~---~~~~~~~i~~~g~v~~L~~ll~~----~----------------~e~a~~~L~~L~~~-  284 (372)
                      |-.++            .   .+.-+..+.+.|+++.+++.+..    .                .+.++.+|.+.+.. 
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            44442            0   11235667778899999988741    1                34588888888764 


Q ss_pred             HhHHHHHHhcc-chHH-HHHHHHhcC---ChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402          285 KEGREEMMRVS-GCVG-VFVKMLKTG---SSRAVQCSLFTLSCLCCCSQEICGDSRKEGV  339 (372)
Q Consensus       285 ~~~~~~i~~~~-g~i~-~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  339 (372)
                      ++++....... +.++ .+..++...   .......+++++.|+..++++.+.++...++
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l  313 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL  313 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence            44455555432 2333 333333322   2333578999999999998877777665543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.02  E-value=0.00045  Score=42.69  Aligned_cols=43  Identities=23%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             ccCCcccCC--Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCC
Q 017402           11 CPISLEIMS--DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPL   53 (372)
Q Consensus        11 C~ic~~~~~--~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~   53 (372)
                      ||+|.+.+.  +--..  +||+.+|+.|..+........||-||+++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            799998872  22233  58999999999988876678899999865

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.99  E-value=0.0001  Score=50.43  Aligned_cols=47  Identities=26%  Similarity=0.608  Sum_probs=22.9

Q ss_pred             CccccCCcccCC-C---ceec----CCchHhhHHHHHHHHhc--CC--------CCCCCCCCCCC
Q 017402            8 DFKCPISLEIMS-D---PVIL----SSGHTFDRASIQRWLDS--GH--------RTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~-~---Pv~~----~cgh~~c~~ci~~~~~~--~~--------~~CP~c~~~~~   54 (372)
                      +..|+||...+. +   |+..    .|+.+|+..|+.+|+..  +.        .+||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            568999998754 2   4332    59999999999999963  11        25999988764

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.11  Score=53.56  Aligned_cols=215  Identities=15%  Similarity=0.188  Sum_probs=131.1

Q ss_pred             CCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHH
Q 017402          144 SDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAIN  219 (372)
Q Consensus       144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~  219 (372)
                      +.++.+|..+.++|..++..+.......+  ......|..-+++.+...+...+..|..+-..  .+....+..   .|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK---LIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH---HHH
Confidence            34778999999999998877444332222  12333344444444555555555555444322  234444433   455


Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC------chHHHHHHHhhh-----HHHHHHHHHHHhCCHhHH
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG------AVPILMRLADAG-----LERAVEVLSILVKCKEGR  288 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g------~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~  288 (372)
                      .++=.++..+. ..+..|..+|..+..    .....+.|      .|...+..+..+     ......-|-.+...-...
T Consensus       742 EvIL~~Ke~n~-~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~  816 (1176)
T KOG1248|consen  742 EVILSLKEVNV-KARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF  816 (1176)
T ss_pred             HHHHhcccccH-HHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence            55544566666 889999999998873    22222222      555666666433     112221122222211122


Q ss_pred             HHHHh---ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          289 EEMMR---VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       289 ~~i~~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ..+..   ..+.+..+...|.++++.+...|++.+..+++..|+.+-.--..-+++.++.++++.+-.+|.+...+|..|
T Consensus       817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            22222   124566677777889999999999999999988787665555555899999999999999999999999765


Q ss_pred             h
Q 017402          366 S  366 (372)
Q Consensus       366 ~  366 (372)
                      -
T Consensus       897 i  897 (1176)
T KOG1248|consen  897 I  897 (1176)
T ss_pred             H
Confidence            3

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.93  E-value=0.032  Score=44.55  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             cccccCChHHHHHHHhcCC------hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC-chHHHHHHHHHH
Q 017402          169 GLVAEGAVSRVVAALRFGS------PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK-LIREKKEAATAL  241 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~------~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL  241 (372)
                      .+.+.||+..|+++++++.      .+....+..++..|-.++...+.... ...|...+....... ++.+...|+..|
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHH
Confidence            4678899999999999876      36777888999998877766777777 689999999988654 358999999999


Q ss_pred             HhhcCCCchhHHHHhcC-chHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          242 YALTSFPENRKRVVSCG-AVPILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       242 ~~L~~~~~~~~~i~~~g-~v~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      -++..++......++.+ -++.|+..|..+    +.++++.+-.|-.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99999888877777665 578899999654    4556666665544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.039  Score=52.29  Aligned_cols=231  Identities=16%  Similarity=0.129  Sum_probs=147.4

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      +.||.|-+-+.  ..++..+...+.-|..|-.-++. + +..  ...++.|..+|++++.+++..+-.++.++-..-.++
T Consensus       167 ~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~-~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~  242 (675)
T KOG0212|consen  167 EFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDL-E-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS  242 (675)
T ss_pred             HHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcH-H-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            44555555555  56788888888877776444432 2 222  467788888999999999976666665553322233


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHH---HHHHHH
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERA---VEVLSI  280 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a---~~~L~~  280 (372)
                      .........++.++.-+.+.++ .++..|+.-|.....-...--...-.|++..++..+.+.     .+.+   -..|..
T Consensus       243 P~s~d~~~~i~vlv~~l~ss~~-~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  243 PSSMDYDDMINVLVPHLQSSEP-EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             ccccCcccchhhccccccCCcH-HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            3332435689999999998887 888888887777666444333333456666666666433     1221   123444


Q ss_pred             HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHH
Q 017402          281 LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN  360 (372)
Q Consensus       281 L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~  360 (372)
                      ++..+...+. +.....++.|.+.+.+.....+-.++..+..+-...| +.-......+.+.|+.-+.+.+++|-..+..
T Consensus       322 l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~  399 (675)
T KOG0212|consen  322 LVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALS  399 (675)
T ss_pred             HHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence            5554544444 3324578899999988888888888888877755423 2222233457888888888888888888877


Q ss_pred             HHHHHhcC
Q 017402          361 LIQTLSGN  368 (372)
Q Consensus       361 ~L~~l~~~  368 (372)
                      +|..+-.+
T Consensus       400 lla~i~~s  407 (675)
T KOG0212|consen  400 LLASICSS  407 (675)
T ss_pred             HHHHHhcC
Confidence            77655443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.00053  Score=59.87  Aligned_cols=48  Identities=31%  Similarity=0.611  Sum_probs=40.7

Q ss_pred             CCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++.-.||+|..--.+|..+. +|..||..|+..++. +..+||+++.+..
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS  346 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence            45567999999999997765 799999999999998 4788999987655

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.85  E-value=0.0021  Score=40.48  Aligned_cols=41  Identities=24%  Similarity=0.622  Sum_probs=32.1

Q ss_pred             cccCCcc--cCCCceecCCc-----hHhhHHHHHHHHhcC-CCCCCCCC
Q 017402           10 KCPISLE--IMSDPVILSSG-----HTFDRASIQRWLDSG-HRTCPITK   50 (372)
Q Consensus        10 ~C~ic~~--~~~~Pv~~~cg-----h~~c~~ci~~~~~~~-~~~CP~c~   50 (372)
                      .|-||.+  .-.+|...||.     +.+...|+.+|+... ..+||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889986  44577778874     779999999999764 55899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.85  E-value=0.23  Score=45.57  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      ..+.+++.|.+.  +..+|..+...+..+..           .-.++.+..++.  +.+..++..|+.+|..+-.     
T Consensus        44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~--d~~~~vr~~a~~aLg~~~~-----  103 (335)
T COG1413          44 AADELLKLLEDE--DLLVRLSAAVALGELGS-----------EEAVPLLRELLS--DEDPRVRDAAADALGELGD-----  103 (335)
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhc--CCCHHHHHHHHHHHHccCC-----
Confidence            345677777765  67788888777544433           225777888888  7777888888887766532     


Q ss_pred             ccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhc
Q 017402          168 VGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLA  202 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls  202 (372)
                           ...++.++..+. +.+..++..++++|..+-
T Consensus       104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~  134 (335)
T COG1413         104 -----PEAVPPLVELLENDENEGVRAAAARALGKLG  134 (335)
T ss_pred             -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence                 334567777777 467777777777777664

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.84  E-value=0.0092  Score=43.89  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHH--hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc
Q 017402          272 ERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKML--KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE  337 (372)
Q Consensus       272 e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  337 (372)
                      ...+.+|+||+. +...++.+.+ .|+++.++..-  +..+|.+++.|..++.++|..++++++.+.+.
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            356788999998 5666777777 67899988876  34689999999999999999999998877553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.84  E-value=0.015  Score=49.38  Aligned_cols=149  Identities=17%  Similarity=0.127  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccc--cccccccCChHHHH
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVV  180 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv  180 (372)
                      .-+|+..|+-++. .++.|..|.++.+--.+-.+|...   .....++..++++|..|...++-  ..-+...+++|..+
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3467777777777 678999999998777777777632   23456899999999998877442  23344689999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-------hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-------AINALVSLLQNGKLIREKKEAATALYALTSFPENRKR  253 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  253 (372)
                      +.+..|+...+..|+.++..+-.++.+-..|.....       .+..++.-+.+..++.+.+.+.++..+|+.++..|..
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a  254 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA  254 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999888876655544222       2223333333333448999999999999999987776


Q ss_pred             HH
Q 017402          254 VV  255 (372)
Q Consensus       254 i~  255 (372)
                      +.
T Consensus       255 L~  256 (293)
T KOG3036|consen  255 LR  256 (293)
T ss_pred             HH
Confidence            64

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00099  Score=55.69  Aligned_cols=53  Identities=19%  Similarity=0.537  Sum_probs=44.4

Q ss_pred             CCccccCCcccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402            7 DDFKCPISLEIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~   61 (372)
                      ..|.||+|.+.+.+.+    ..+|||.||..|.++.+.. ...||+|+.++. ..++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plk-drdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLK-DRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCc-ccceEe
Confidence            5689999999988764    4589999999999987764 778999999999 666655

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.52  Score=46.90  Aligned_cols=216  Identities=15%  Similarity=0.165  Sum_probs=114.5

Q ss_pred             CChhHHHHHHHHHhcCCCCccc-ccccc--------------ccC---ChHHHHHHHh-cCChHHHHHHHHHHHHhcccc
Q 017402          145 DGFTLQEKALSLLLNLSLDDDN-KVGLV--------------AEG---AVSRVVAALR-FGSPDCRAIAATIITSLAVVE  205 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~--------------~~g---~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~  205 (372)
                      .+|-+|...++.|.-|-.++.. .+.|-              +.|   ..+.+..++. ..+...+..|+-+|..+-.+.
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~  325 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR  325 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence            3567888888888887766322 22111              011   1222222222 256778888888888887776


Q ss_pred             cchhhhccccc----------hH----HHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-
Q 017402          206 VNKATIGDYPY----------AI----NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-  270 (372)
Q Consensus       206 ~~~~~i~~~~g----------~i----~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-  270 (372)
                      ++....+...+          ++    ..+++.|++.+. .++..|++.++.|.... |...+     ++.|+..|.+. 
T Consensus       326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~-SIkrralELs~~lvn~~-Nv~~m-----v~eLl~fL~~~d  398 (866)
T KOG1062|consen  326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV-SIKRRALELSYALVNES-NVRVM-----VKELLEFLESSD  398 (866)
T ss_pred             ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhccc-cHHHH-----HHHHHHHHHhcc
Confidence            55444433111          11    245677777777 88999999888887544 43333     34577777433 


Q ss_pred             ---HHHHHHHHHHHhC----CHhH----HHHHHhc------cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC------
Q 017402          271 ---LERAVEVLSILVK----CKEG----REEMMRV------SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS------  327 (372)
Q Consensus       271 ---~e~a~~~L~~L~~----~~~~----~~~i~~~------~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------  327 (372)
                         +..+..-+..++.    ....    .-.+..+      ...+..++.++.+..+...+.+..-|+.-...+      
T Consensus       399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is  478 (866)
T KOG1062|consen  399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS  478 (866)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh
Confidence               3334433444433    1111    1111111      335667777776654444444333333321111      


Q ss_pred             ------------HHHHH------------HHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHHHhc
Q 017402          328 ------------QEICG------------DSRKEGVLDICMGLLED--DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       328 ------------~~~~~------------~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~  367 (372)
                                  .|+-.            ..-+..++..+..++.+  .+..+|..|..+|..|+.
T Consensus       479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs  544 (866)
T KOG1062|consen  479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS  544 (866)
T ss_pred             hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence                        01111            11224477777777765  357778888888876653

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.72  E-value=0.016  Score=49.92  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC---hhHHHHHHHHHhcCCCCcc--ccccccccCChHHHH
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG---FTLQEKALSLLLNLSLDDD--NKVGLVAEGAVSRVV  180 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~lv  180 (372)
                      .-+|+..++-+|. +++.|..|.++.+.-.|..+|...+.+   ..++..++++++.|...++  ...-+.+.+.+|..+
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            4467888888888 678999999999888888999743333   4478999999999887533  333455789999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-------hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-------AINALVSLLQNGKLIREKKEAATALYALTSFPENRKR  253 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  253 (372)
                      +.++.|+.-.|..|+.++..+-.++.+-..+.+...       ++..++.-+....++.+.++..++-..|+.++..+..
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999999999888776666655333       3333333333343459999999999999999998887


Q ss_pred             HHh
Q 017402          254 VVS  256 (372)
Q Consensus       254 i~~  256 (372)
                      +..
T Consensus       226 L~~  228 (262)
T PF04078_consen  226 LRQ  228 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.22  Score=48.76  Aligned_cols=200  Identities=11%  Similarity=0.156  Sum_probs=114.3

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----------------------
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH----------------------  143 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----------------------  143 (372)
                      .|.+|.|++.|.++  |+.++..|+..+..|++.+|.|.-.     .-|.+..+|..+                      
T Consensus       180 r~~FprL~EkLeDp--Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR  252 (877)
T KOG1059|consen  180 RPCFPRLVEKLEDP--DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR  252 (877)
T ss_pred             hhhHHHHHHhccCC--CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence            56678899999887  8999999999999999988855322     123333444321                      


Q ss_pred             --------------C-CChhHHHHHHHHHhcC--CCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc
Q 017402          144 --------------S-DGFTLQEKALSLLLNL--SLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE  205 (372)
Q Consensus       144 --------------~-~~~~~~~~a~~~L~~l--~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~  205 (372)
                                    + .-..+...++.++...  +.+ +++-..+  .=.++.|-.++.++|++.+-.++-++..+....
T Consensus       253 LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH  330 (877)
T KOG1059|consen  253 LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH  330 (877)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence                          1 1122233333333221  111 1111100  012444445556778888888888888776433


Q ss_pred             cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh--h---HHHHHHHHHH
Q 017402          206 VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA--G---LERAVEVLSI  280 (372)
Q Consensus       206 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~--~---~e~a~~~L~~  280 (372)
                        -..+.   .--+.++..|.+.++ .++-.|+..|+.+...+ |...     ++..|+..+..  +   +...+.-+-.
T Consensus       331 --p~~Vq---a~kdlIlrcL~DkD~-SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~  398 (877)
T KOG1059|consen  331 --PKAVQ---AHKDLILRCLDDKDE-SIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIIS  398 (877)
T ss_pred             --HHHHH---HhHHHHHHHhccCCc-hhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence              12222   235567888888888 99999999999888543 3333     34456655521  1   3444444444


Q ss_pred             HhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402          281 LVKCKEGREEMMRVSGCVGVFVKMLKT  307 (372)
Q Consensus       281 L~~~~~~~~~i~~~~g~i~~L~~ll~~  307 (372)
                      +|.. .+-..|..-+..+..|+++.+-
T Consensus       399 iCS~-snY~~ItdFEWYlsVlveLa~l  424 (877)
T KOG1059|consen  399 ICSQ-SNYQYITDFEWYLSVLVELARL  424 (877)
T ss_pred             Hhhh-hhhhhhhhHHHHHHHHHHHHhc
Confidence            4442 3334455545667777777653

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.043  Score=54.13  Aligned_cols=195  Identities=13%  Similarity=0.133  Sum_probs=134.7

Q ss_pred             CCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHH-hcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          162 LDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITS-LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       162 ~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      .....+...++.|+...|+++...+..+.+..+..+|.. ++..  . +.  . ...++++.+.+......--...++.+
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~-~~--~-~~v~~~~~s~~~~d~~~~en~E~L~a  565 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--G-ER--S-YEVVKPLDSALHNDEKGLENFEALEA  565 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--C-Cc--h-hhhhhhhcchhhhhHHHHHHHHHHHH
Confidence            345556678899999999999999899999988888882 1111  0 11  1 24677777776654433445578999


Q ss_pred             HHhhcCCC-chhHHHHhcCchHHHHHHH-hh-h--HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHH
Q 017402          241 LYALTSFP-ENRKRVVSCGAVPILMRLA-DA-G--LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQ  314 (372)
Q Consensus       241 L~~L~~~~-~~~~~i~~~g~v~~L~~ll-~~-~--~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~  314 (372)
                      +.||++.+ ..|..+++.-+++.+-.++ ++ .  +..++..+.||.-++..-..... .....+.....+....+....
T Consensus       566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            99999854 5778888775665544444 22 2  66688899999998877665444 345666666666666667777


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          315 CSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      .+++++..|.......+..+.+ ......+..++.+++++++.......
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~  694 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVII  694 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhh
Confidence            8888888787776766663333 45688888888888888876655444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.11  Score=50.73  Aligned_cols=205  Identities=17%  Similarity=0.201  Sum_probs=120.4

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402          134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG  212 (372)
Q Consensus       134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~  212 (372)
                      +-++.+|.  +..+-++..|+.+|..+... ++.-     ...+|.|++-|.++|+.++..|..++..||.-+. +..+ 
T Consensus       147 ~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnP-knyL-  217 (877)
T KOG1059|consen  147 DDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNP-QNYL-  217 (877)
T ss_pred             HHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC-cccc-
Confidence            44667777  77888999999999886544 2221     2357899999999999999999999999986542 2221 


Q ss_pred             cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHhcCchHHHHHHHhhhHH-----HHHHH-HH-HHhCC
Q 017402          213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVSCGAVPILMRLADAGLE-----RAVEV-LS-ILVKC  284 (372)
Q Consensus       213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~~e-----~a~~~-L~-~L~~~  284 (372)
                         ..-|.+.++|...+..=+....+....+|+--+. -..+     .+++|..++.+...     .|+.. ++ +++.+
T Consensus       218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               2345666666654332566666777777776432 2222     45677777755411     01110 00 23332


Q ss_pred             H-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          285 K-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       285 ~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                      . +.-..+.-   ++..|-.++.+.++..+-.++-++..+....+...+.-     -+.++..+.+.++.+|-.|..+|-
T Consensus       290 ~~d~~asiqL---CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASIQL---CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHHHH---HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence            2 22222222   45566556666666666666666666665545443321     234555555666666666665554

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.64  E-value=0.0013  Score=57.86  Aligned_cols=52  Identities=15%  Similarity=0.465  Sum_probs=40.5

Q ss_pred             CCCCccccCCcccCCC--ce--ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSD--PV--ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL   59 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~--Pv--~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~   59 (372)
                      -...|.|||+...|..  +.  ..+|||.|+..++.+.-  ....||.|..+|. ..++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~-~~Di  165 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFT-EEDI  165 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccc-cCCE
Confidence            3567999999999953  22  34899999999998873  3557999999999 5554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.61  E-value=0.0015  Score=57.12  Aligned_cols=48  Identities=17%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             CCccccCCcccCC--Ccee--cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMS--DPVI--LSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~--~Pv~--~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++..||+|.+.|.  |--.  .+||...|++|.......-+..||.||..+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            3445999999875  3323  4689999999987766555678999999877

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.038  Score=56.05  Aligned_cols=172  Identities=18%  Similarity=0.154  Sum_probs=126.7

Q ss_pred             HHHHHHhccccc-chhhh--ccccchHHHHHHHhhcCCchHHHHHHHHHHHh--hcCCCchhHHHHhcCchHHHHHHHhh
Q 017402          195 ATIITSLAVVEV-NKATI--GDYPYAINALVSLLQNGKLIREKKEAATALYA--LTSFPENRKRVVSCGAVPILMRLADA  269 (372)
Q Consensus       195 ~~~L~~ls~~~~-~~~~i--~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~--L~~~~~~~~~i~~~g~v~~L~~ll~~  269 (372)
                      .+||.-|+..-+ ..+.+  .-..|++|-.++||++... + .+..+-.|+.  |+.++.+...+++.++-.-.+..|+.
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~-E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR-E-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH-h-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            345555554332 33332  2224999999999998765 4 4445555553  67788888899988776666666644


Q ss_pred             -h------HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChh
Q 017402          270 -G------LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVL  340 (372)
Q Consensus       270 -~------~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~  340 (372)
                       +      +..++.+|+.++.+ ..|++...+ .+.+..=.+.+.++ .+-.++=.+-.|..|=.+.++++=.-++.++.
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence             2      44588899999885 667777777 77888777777664 47778888888888877767777777889999


Q ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          341 DICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       341 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      ++|..++.+.-++||.+|..+|..|-++.
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999998776653

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0022  Score=57.36  Aligned_cols=47  Identities=23%  Similarity=0.622  Sum_probs=35.0

Q ss_pred             CccccCCcccCCCce---ec-CCchHhhHHHHHHHHhcCC--CCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPV---IL-SSGHTFDRASIQRWLDSGH--RTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv---~~-~cgh~~c~~ci~~~~~~~~--~~CP~c~~~~~   54 (372)
                      .-.|.||.+.+..-.   .+ .|||+|+-.|+.+|+...+  .+||.|+-.+.
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            346999966543221   23 4999999999999998654  48999996666

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.54  E-value=0.095  Score=43.36  Aligned_cols=111  Identities=24%  Similarity=0.317  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC-hHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA-VSRVV  180 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~-i~~lv  180 (372)
                      ++.+|.+++..+..|+...+..-     ...++.+...|.  +.++.++..|+.+|..|...+-.+.    .|- +..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHH
Confidence            46789999999999998665332     235888999999  8999999999999999876533222    343 48888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN  227 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~  227 (372)
                      ..+.+++++++..|...+..++... +...+.   ..++.++..+..
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i~---~~~~e~i~~l~~  112 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKKR-NPNIIY---NNFPELISSLNN  112 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHhc-cchHHH---HHHHHHHHHHhC
Confidence            8999999999999999999998653 223332   345555555554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.51  E-value=0.011  Score=44.59  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .+..|+.+|.. .++....-|+.=|..++.+.|+.+..+-+.|+=..+++++.+.+++||..|..+++.+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            67888999943 4666677888889999998899999999999999999999999999999999999765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.034  Score=54.62  Aligned_cols=240  Identities=16%  Similarity=0.126  Sum_probs=143.3

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      ++.+....  +.|.+.++=.--.+.+.+...+..     ..+.+..+++=..  +.++.++..|++.+..+-.+.-.   
T Consensus        52 ~dvvk~~~--T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~--d~np~iR~lAlrtm~~l~v~~i~---  119 (734)
T KOG1061|consen   52 PDVVKCMQ--TRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCE--DPNPLIRALALRTMGCLRVDKIT---  119 (734)
T ss_pred             HHHHhhcc--cCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCC--CCCHHHHHHHhhceeeEeehHHH---
Confidence            44444333  235666666666777777766632     1233444433333  56788888888888777543221   


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE  249 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  249 (372)
                         .-...++.+.++++++.+|..++-.+.++-  +.+.+.... .|.++.|-.++.+.++ .+..+|+.+|..+...+.
T Consensus       120 ---ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~-~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  120 ---EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVED-SGLVDALKDLLSDSNP-MVVANALAALSEIHESHP  192 (734)
T ss_pred             ---HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccc-cchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHhCC
Confidence               335688999999999999998888777763  344555555 7999999999997666 999999999999987543


Q ss_pred             h-hHHHHhcCchHHHHHHHhhhHH-HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          250 N-RKRVVSCGAVPILMRLADAGLE-RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       250 ~-~~~i~~~g~v~~L~~ll~~~~e-~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                      + -.--+..-.+..++..+....| .-+.+|.+++..-....  .+....+..+...+++.++.+.-.+..++..+...-
T Consensus       193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence            2 1111111123334444433322 23455555555321111  000113455566667777777777787777776653


Q ss_pred             HHHHHHHHhcChhHHHHHHhhccc
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDN  351 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~  351 (372)
                      .. .....-..+.+.++.++....
T Consensus       271 ~~-~~~~~~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  271 KQ-VNELLFKKVAPPLVTLLSSES  293 (734)
T ss_pred             HH-HHHHHHHHhcccceeeecccc
Confidence            34 333333345666666666554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.49  E-value=0.018  Score=52.53  Aligned_cols=49  Identities=35%  Similarity=0.634  Sum_probs=42.4

Q ss_pred             ccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL   59 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~   59 (372)
                      +.|.|..++-++||+-+ .||.|.++-|++++.+ ..+||..+++++ ..++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs-~eel   50 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLS-IEEL   50 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCC-HHHe
Confidence            46999999999999865 9999999999999987 667999999888 4443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.028  Score=55.17  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=56.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      .++...+++.  ++.+|..++-.+.++-..   +.+...+.|.++.|.+++.  +.++.+..+|+.+|..+...+.
T Consensus       124 ~Pl~~~l~d~--~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  124 DPLLKCLKDD--DPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHhccCC--ChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCC
Confidence            4577777765  788898888888777653   4667788999999999999  8999999999999999876644

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.43  E-value=0.69  Score=47.14  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=131.1

Q ss_pred             HHHHhhcc---CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc--CCC----hhHHHHHHHHHhcCCC
Q 017402           92 LISVLTSK---SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH--SDG----FTLQEKALSLLLNLSL  162 (372)
Q Consensus        92 li~~L~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~----~~~~~~a~~~L~~l~~  162 (372)
                      ++.+|.+.   +++.+.....++.|...++ -+.||+.+.+.|+++.|+..|...  ...    .++.+..+.++..+..
T Consensus       122 ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~  200 (802)
T PF13764_consen  122 LLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLS  200 (802)
T ss_pred             HHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHH
Confidence            45555432   2223333344555555555 678999999999999999888631  222    5677777777766544


Q ss_pred             Cccc---c--ccccccC-----C---hHHHHHHHhc----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh
Q 017402          163 DDDN---K--VGLVAEG-----A---VSRVVAALRF----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL  225 (372)
Q Consensus       163 ~~~~---~--~~i~~~g-----~---i~~lv~~L~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll  225 (372)
                      +...   .  .......     .   +..+++.+.+    .++.+....+++|-.|+..++.++...-  .-+.+.+++=
T Consensus       201 ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F~p~l~f~  278 (802)
T PF13764_consen  201 EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHFKPYLDFD  278 (802)
T ss_pred             HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHHHHhcChh
Confidence            3111   1  1111111     2   5555555544    3678888899999999977755444322  2333333322


Q ss_pred             hcCCc-hHHHHHHHHHHHhhcC----CC---chhHHHHhcCchHHHHHHHhhh--------------------HHHHHHH
Q 017402          226 QNGKL-IREKKEAATALYALTS----FP---ENRKRVVSCGAVPILMRLADAG--------------------LERAVEV  277 (372)
Q Consensus       226 ~~~~~-~~~~~~a~~aL~~L~~----~~---~~~~~i~~~g~v~~L~~ll~~~--------------------~e~a~~~  277 (372)
                      +-+.+ ..--...+..++.++.    +.   .-|..+++.|++...++.|...                    ...++.+
T Consensus       279 ~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~l  358 (802)
T PF13764_consen  279 KFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRL  358 (802)
T ss_pred             hcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHH
Confidence            11111 0111233455555443    22   2567888999999998888211                    2357888


Q ss_pred             HHHHhCCHhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcC
Q 017402          278 LSILVKCKEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       278 L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~  326 (372)
                      |.-|+.+....+.+.. .+++ .+++.|...  ...+-..|-.+|-.++..
T Consensus       359 L~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  359 LRGLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence            8999987665555555 5577 444555432  234445666666666653

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.41  E-value=0.0012  Score=59.04  Aligned_cols=45  Identities=29%  Similarity=0.521  Sum_probs=38.8

Q ss_pred             cccCCcccCCCceecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402           10 KCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus        10 ~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      .|.||-+-=+|-.+=+|||-.|-.|+..|.... ..+||.||....
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            599999988887777899999999999999654 678999998766

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.39  E-value=0.00062  Score=65.96  Aligned_cols=46  Identities=22%  Similarity=0.508  Sum_probs=37.8

Q ss_pred             CccccCCcccCCCcee---cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVI---LSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~---~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .-.||+|..-+.|-..   .+|+|.||..|+..|..- ..+||.||..|.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhh
Confidence            3468899888777654   469999999999998874 678999999887

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.36  E-value=0.044  Score=40.20  Aligned_cols=69  Identities=20%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ..+++++..+.+.+.++|..|+.+|.++++..   +.+++.  ..+.+.|..++.+.+++||..|.-+-+.|++
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd   97 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD   97 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence            37888999999999999999999999998763   334433  4588999999999999999999877777753

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.36  E-value=0.13  Score=50.83  Aligned_cols=237  Identities=15%  Similarity=0.139  Sum_probs=152.5

Q ss_pred             HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHh-cCCCCccccccccccCChHHHHHHHhcCChHHH--HHHHHHHH
Q 017402          123 SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL-NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCR--AIAATIIT  199 (372)
Q Consensus       123 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~--~~a~~~L~  199 (372)
                      -+...++.|+...|+++..  ....+.+.....+|. .+....+ +    ....++++...+.+. ....  -.+..++.
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~--~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d-~~~~en~E~L~alt  567 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQ--QQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHND-EKGLENFEALEALT  567 (748)
T ss_pred             hcCccccccHHHHHHHHHH--HhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence            4566678899999999998  677788888888887 2222211 1    123445555555332 2222  24778899


Q ss_pred             Hhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH-Hh-cCchHHHHHHHhhh---HH-
Q 017402          200 SLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRV-VS-CGAVPILMRLADAG---LE-  272 (372)
Q Consensus       200 ~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i-~~-~g~v~~L~~ll~~~---~e-  272 (372)
                      ||+..+ ..+..|.. .-+++.+-+++...+. ..+..++..+.||...+..-... ++ ...++.....+...   .+ 
T Consensus       568 nLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  568 NLASISESDRQKILK-EKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             cccCcchhhHHHHHH-HhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            998776 45666655 4455555555656665 88999999999999988755544 44 24455555555333   12 


Q ss_pred             HHHHHHHHHhCCHhHHHH-HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc
Q 017402          273 RAVEVLSILVKCKEGREE-MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN  351 (372)
Q Consensus       273 ~a~~~L~~L~~~~~~~~~-i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~  351 (372)
                      .+..++..+....++.-. +.+...+...++.++.+.+..++-..+....++...+.+....+.....++.+..+..-..
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            123333323332222221 3333447888899999999999988888888877666788888888888888888777766


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 017402          352 EKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       352 ~~v~~~a~~~L~~l~~~~  369 (372)
                      ...++.+...|...-+.+
T Consensus       726 a~~~~~~~~~l~~a~~~~  743 (748)
T KOG4151|consen  726 APKREDAAPCLSAAEEYG  743 (748)
T ss_pred             hhhhhhhhhHHHHHHHhh
Confidence            666777777776544433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.0017  Score=58.52  Aligned_cols=58  Identities=31%  Similarity=0.634  Sum_probs=44.2

Q ss_pred             CccccCCcccCCCc-----eecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccHHHH
Q 017402            8 DFKCPISLEIMSDP-----VILSSGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPNHALR   66 (372)
Q Consensus         8 ~~~C~ic~~~~~~P-----v~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n~~l~   66 (372)
                      .-+||||++-+.-|     |.+.|||-|-..||++|+.+. ...||.|...-. +..+.+-..++
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR   67 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALR   67 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHH
Confidence            35899999987766     467899999999999999532 347999988776 66666654443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.35  E-value=0.2  Score=47.93  Aligned_cols=248  Identities=15%  Similarity=0.111  Sum_probs=143.4

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc-cccc------
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV-GLVA------  172 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~-~i~~------  172 (372)
                      .|+..|.+|=..|.++..++  +.      ..+..+++.|-+....+..+..|.-+|.| |...++.+. ...+      
T Consensus        17 pD~n~rl~aE~ql~~l~~~d--F~------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~   88 (858)
T COG5215          17 PDPNARLRAEAQLLELQSGD--FE------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR   88 (858)
T ss_pred             CCCCccccHHHHHHHhcccc--HH------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence            36778888888888888754  22      23556677776434567788888888887 433333221 1110      


Q ss_pred             ----cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          173 ----EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       173 ----~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                          ..+=....+.|.+..+..-..|+.++..++..+ .+.    .-.|.+..++...-++.+...+.+++.++.+.|..
T Consensus        89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~----~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces  164 (858)
T COG5215          89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNS----LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES  164 (858)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccc----cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence                111122334555666666677788888877544 111    11366666666666655557888999999999875


Q ss_pred             CchhHHHH-hcCc-h-HHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh---ccchHHHHHHHHhcCChhHHHhH
Q 017402          248 PENRKRVV-SCGA-V-PILMRLADAG-----LERAVEVLSILVKCKEGREEMMR---VSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       248 ~~~~~~i~-~~g~-v-~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~---~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      ..- +.++ ..+. + ......+..+     +-.++.+|.+-+  ..-+..+..   .+-.+...++.-+..+..++..|
T Consensus       165 ~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl--~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aa  241 (858)
T COG5215         165 EAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL--MFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA  241 (858)
T ss_pred             cCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH--HHHHHhhcchhhhchhheeeehhccCCcHHHHHHH
Confidence            543 3333 2232 2 2223333333     222444444411  112222222   11234445566666777888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                      .++|..|-.-.-+.-+-.++.-.........++.+++|.-+|...-+
T Consensus       242 fgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs  288 (858)
T COG5215         242 FGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS  288 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            88888776554455555566656667777888888888888876553

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.32  E-value=0.16  Score=49.96  Aligned_cols=147  Identities=12%  Similarity=0.115  Sum_probs=93.2

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHH---HHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc-cc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASR---RKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NK  167 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~-~~  167 (372)
                      ++.+|++.  ++++|.+|+..+..++.-- .++   +.+...|.|  |.+-|.  ...+++.-..+.+|..+...-. .+
T Consensus       804 iL~rLnnk--sa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylg--eeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  804 ILWRLNNK--SAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLG--EEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHhcCC--ChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcC--cccHHHHHHHHHHHHHHHHhccccc
Confidence            44456655  7899999999998888521 122   233444432  556676  6778876555555544432110 01


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..=--.|.+|.|.-+|++....+++++...+..++..........+-..+=-.|+++|++.+- +++.+|...+..++.
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK-~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK-EIRRAAVNTFGYIAK  954 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence            100126889999999999999999999999999986553221111111234457777777665 888888888877664

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.68  Score=46.01  Aligned_cols=246  Identities=17%  Similarity=0.163  Sum_probs=123.5

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc--
Q 017402           94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV--  171 (372)
Q Consensus        94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--  171 (372)
                      +.|.+.  .+.+..+|++++..+...+.   +.+..  .+..|--++.  +....+|..|.++|..+++.........  
T Consensus       252 s~l~~K--~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~fls--sp~~~lRfaAvRtLnkvAm~~P~~v~~cN~  322 (865)
T KOG1078|consen  252 SCLRHK--SEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLS--SPKVALRFAAVRTLNKVAMKHPQAVTVCNL  322 (865)
T ss_pred             HHHhch--hHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhc--CcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence            344443  67888999999999886543   22222  5666777777  7788899999999999886533222111  


Q ss_pred             -------cc---CChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402          172 -------AE---GAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT  239 (372)
Q Consensus       172 -------~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  239 (372)
                             ..   =.-.++..+|+.++.........-+.++..+  ++++..++   ++|..|....-..     ..--..
T Consensus       323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvv---dai~sLc~~fp~k-----~~~~m~  394 (865)
T KOG1078|consen  323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVV---DAIRSLCLKFPRK-----HTVMMN  394 (865)
T ss_pred             hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeH---HHHHHHHhhccHH-----HHHHHH
Confidence                   11   1334555566666544443333333333221  23332222   2344333322111     111111


Q ss_pred             HHHhhcCCC---chhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCCHhHHH---HHHh---c--------cchHH
Q 017402          240 ALYALTSFP---ENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKCKEGRE---EMMR---V--------SGCVG  299 (372)
Q Consensus       240 aL~~L~~~~---~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~~~~~~---~i~~---~--------~g~i~  299 (372)
                      .|.++-..+   +-+..     .++.++.++...   +|..+.-|+..-.+-+-..   .+..   .        ...+.
T Consensus       395 FL~~~Lr~eGg~e~K~a-----ivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir  469 (865)
T KOG1078|consen  395 FLSNMLREEGGFEFKRA-----IVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIR  469 (865)
T ss_pred             HHHHHHHhccCchHHHH-----HHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhH
Confidence            222221111   11111     223333333211   3333322222221111111   0000   0        11233


Q ss_pred             HHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          300 VFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       300 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      .+...+-=.+..++-.|+.+|..+...++.     ....+.-.|.+.+.+.++++|..|..+|+.+.
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            343433335667788888888887744322     23345666777788889999999999999987

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.31  E-value=0.02  Score=49.63  Aligned_cols=101  Identities=17%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccccccccCChHHHHHH
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKVGLVAEGAVSRVVAA  182 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~lv~~  182 (372)
                      .....|++.|+-++--++..|..+.+...+..++++|.. ...+.++..++.+|..+ ..++.|...+.+.+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~-~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP-SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc-CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            346678999999998899999999999999999999952 46788999999999774 4558888889999999999999


Q ss_pred             HhcC--ChHHHHHHHHHHHHhcccc
Q 017402          183 LRFG--SPDCRAIAATIITSLAVVE  205 (372)
Q Consensus       183 L~~~--~~~~~~~a~~~L~~ls~~~  205 (372)
                      +++.  +.+++......|+-....+
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHccc
Confidence            9874  6788888887776554433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.25  E-value=0.034  Score=46.30  Aligned_cols=119  Identities=11%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             ChHHHHHHHHHHHHhcccccchhhhcc---------------ccchHHHHHHHhhc-----CCchHHHHHHHHHHHhhcC
Q 017402          187 SPDCRAIAATIITSLAVVEVNKATIGD---------------YPYAINALVSLLQN-----GKLIREKKEAATALYALTS  246 (372)
Q Consensus       187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~---------------~~g~i~~Lv~ll~~-----~~~~~~~~~a~~aL~~L~~  246 (372)
                      +......++.+|.|++..++....+..               ....+..|+..+..     .+...-....+.++.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            334455677777777776655542211               12478888888876     1223677889999999999


Q ss_pred             CCchhHHHHhc--Cc--hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhcc--chHHHHHHHH
Q 017402          247 FPENRKRVVSC--GA--VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVS--GCVGVFVKML  305 (372)
Q Consensus       247 ~~~~~~~i~~~--g~--v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~--g~i~~L~~ll  305 (372)
                      .+++|..+.+.  +.  +..|+....+.    +.-++.+|.|+|...+....+....  +.++.|+--+
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            99999999955  34  55566555433    5669999999999999998888832  3344443333

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.24  E-value=0.26  Score=47.50  Aligned_cols=147  Identities=14%  Similarity=0.185  Sum_probs=96.8

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcCh--HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC---cc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDS--ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD---DD  165 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~---~~  165 (372)
                      .++.+|++.  .+++|.+|+.....++.--.  .--+.+...|.|  |.+-|.  ...+++.-..+.++..+...   +.
T Consensus       608 tiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         608 TILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLG--EDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcC--cccHHHHHHHHHHHHHHhhhhcccc
Confidence            355677766  78999999988887774211  012333444432  445555  67788877777777665433   22


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      -+..  -.|.+|.|.-+|++....+..+....+..++.......-..+-..+--.|+++|++-+- +.+.+|...+.-++
T Consensus       682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nK-eiRR~A~~tfG~Is  758 (975)
T COG5181         682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNK-EIRRNATETFGCIS  758 (975)
T ss_pred             cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence            2222  26899999999999999999999999999887654322222211234467777777766 89999998887766


Q ss_pred             C
Q 017402          246 S  246 (372)
Q Consensus       246 ~  246 (372)
                      .
T Consensus       759 ~  759 (975)
T COG5181         759 R  759 (975)
T ss_pred             h
Confidence            4

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.24  E-value=0.82  Score=46.62  Aligned_cols=241  Identities=19%  Similarity=0.147  Sum_probs=148.5

Q ss_pred             HHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc----CC----hHHHHH
Q 017402          125 RKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF----GS----PDCRAI  193 (372)
Q Consensus       125 ~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~----~~----~~~~~~  193 (372)
                      ..+.+.||+..|+++|.+.   ....+.....+..|..++.-+.||..+.+.|+++.|+..|..    +.    .++-+.
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            3455789999999999742   234567778888888888889999999999999999998852    23    455555


Q ss_pred             HHHHHHHhccccc---chhhhc--c-------ccchHHHHHHHhhcCC---chHHHHHHHHHHHhhcCCCchhH-HHHhc
Q 017402          194 AATIITSLAVVEV---NKATIG--D-------YPYAINALVSLLQNGK---LIREKKEAATALYALTSFPENRK-RVVSC  257 (372)
Q Consensus       194 a~~~L~~ls~~~~---~~~~i~--~-------~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~-~i~~~  257 (372)
                      ...++..+.....   ......  .       ...-+..|++.+.+..   .+.+....+++|-+|+..++... .+++ 
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-  269 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-  269 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence            5555554432211   111000  0       1235777887777642   35888899999999998765443 3332 


Q ss_pred             CchHHHHHHH--hhh----HHHHHHHHH----HHhCC---HhHHHHHHhccchHHHHHHHHhcCChh-------------
Q 017402          258 GAVPILMRLA--DAG----LERAVEVLS----ILVKC---KEGREEMMRVSGCVGVFVKMLKTGSSR-------------  311 (372)
Q Consensus       258 g~v~~L~~ll--~~~----~e~a~~~L~----~L~~~---~~~~~~i~~~~g~i~~L~~ll~~~~~~-------------  311 (372)
                       -+.+.+++=  +..    ....+....    ++-.+   ..-++.+++ .|.+...+.+|...-|.             
T Consensus       270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l  347 (802)
T PF13764_consen  270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFL  347 (802)
T ss_pred             -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence             112222211  111    111222233    33222   344667777 79999899988653321             


Q ss_pred             ---HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhcCC
Q 017402          312 ---AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       312 ---~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~  369 (372)
                         ....++..|.-+|.+.... +.++..++++.+-.|-+.. ...+=.-|..+|..|.++.
T Consensus       348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence               2356788888889875544 4446677775544444433 5566677777777777654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.21  E-value=0.091  Score=52.50  Aligned_cols=139  Identities=17%  Similarity=0.112  Sum_probs=103.8

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +++++....  .|.+.|+=.--.|...++.+|+  ..+.   .+..+.+=|.  +.++.+|..|++++..+-..+-    
T Consensus        58 ~dViK~~~t--rd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~--d~N~~iR~~AlR~ls~l~~~el----  124 (757)
T COG5096          58 PDVIKNVAT--RDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQ--DPNEEIRGFALRTLSLLRVKEL----  124 (757)
T ss_pred             HHHHHHHHh--cCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhcc--CCCHHHHHHHHHHHHhcChHHH----
Confidence            556666653  3777777777777777776661  1111   3556666666  7899999999999998843221    


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                        -...++++.+++.++++.+|..|+-++.++=.  -.+..+.+ .|.+..+..++.+.++ .+..+|+.+|..+...
T Consensus       125 --~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~-~g~~~~l~~l~~D~dP-~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         125 --LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHE-LGLIDILKELVADSDP-IVIANALASLAEIDPE  196 (757)
T ss_pred             --HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhc-ccHHHHHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence              24468999999999999999999999999843  34555566 6899999999988887 9999999999988654

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=96.14  E-value=0.0075  Score=45.66  Aligned_cols=48  Identities=19%  Similarity=0.321  Sum_probs=40.8

Q ss_pred             CCccccCCcccCCCceec----CCchHhhHHHHHHHHhcC--CCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVIL----SSGHTFDRASIQRWLDSG--HRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~----~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~   54 (372)
                      .-+.|-||.+...|...+    .||...|..|....|...  .+.||+|++++.
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            457899999999998876    499999999998888653  468999999887

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.8  Score=45.01  Aligned_cols=245  Identities=13%  Similarity=0.092  Sum_probs=140.1

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~  168 (372)
                      +++-.+|.++++..-+|..|+-.|..|-+.+|+.   +..-+....++.+|.  +.+..+...+...+..|+.. ++.. 
T Consensus       149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~--D~~~gv~ta~~sLi~~lvk~~p~~y-  222 (938)
T KOG1077|consen  149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLD--DQHMGVVTAATSLIEALVKKNPESY-  222 (938)
T ss_pred             hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhC--ccccceeeehHHHHHHHHHcCCHHH-
Confidence            3466788888777778888888888888766532   222356778888888  66666777777777666654 2221 


Q ss_pred             cccccCChHHHHHHHh----c-------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-
Q 017402          169 GLVAEGAVSRVVAALR----F-------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL-  230 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~----~-------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-  230 (372)
                          .+.++.-+.-|+    .             +.+=.....+++|.++-..++.-....- ..+++.+++..++... 
T Consensus       223 ----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~  297 (938)
T KOG1077|consen  223 ----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKS  297 (938)
T ss_pred             ----hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccc
Confidence                122233222221    1             1233455666666666333322222111 2345555555442111 


Q ss_pred             h-----HHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHH
Q 017402          231 I-----REKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGV  300 (372)
Q Consensus       231 ~-----~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~  300 (372)
                      .     .++...+.-..+|+. .++....+.+  ++..|-++|.+.    +=.++.-+..|+..+...+.+..+   .+.
T Consensus       298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~  372 (938)
T KOG1077|consen  298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDT  372 (938)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHH
Confidence            0     112222222223443 2333344433  455566666432    445777788888887777777664   778


Q ss_pred             HHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHH
Q 017402          301 FVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRN  357 (372)
Q Consensus       301 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~  357 (372)
                      ++..|+ ..+..+++.|+..|..+|.  .++.+.+     +.-|++.+.+.+..+|+.
T Consensus       373 Ii~sLkterDvSirrravDLLY~mcD--~~Nak~I-----V~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  373 IINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQI-----VAELLQYLETADYSIREE  423 (938)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhc--hhhHHHH-----HHHHHHHHhhcchHHHHH
Confidence            888887 5788999999999999995  4555554     344566666655555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.11  E-value=0.36  Score=44.09  Aligned_cols=197  Identities=14%  Similarity=0.111  Sum_probs=139.8

Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchh-----hhccc-cchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKA-----TIGDY-PYAINALVSLLQNGKLIREKKEAATAL  241 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~-----~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL  241 (372)
                      .+.+.|.+..|+..|..-+.+.+..++.+..++-... ..+.     .+... ..++..|+.--.   .+++.-.+...|
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence            3556788999999999999999999999998887654 2222     33332 345555554433   336788888899


Q ss_pred             HhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHH
Q 017402          242 YALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQ  314 (372)
Q Consensus       242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~  314 (372)
                      +....++.....+.....+..+.+.+..+    .-.|..++.. |..+..--..+..  .+..+..+..++.+++-..++
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            99998888888888888888888888665    3445555554 4556665555555  234677888888888888999


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHh----cChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          315 CSLFTLSCLCCCSQEICGDSRK----EGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      .++..|..+-.. +.+...|.+    ..-+..++.++++.+..+|-.|=.+.+.+--++
T Consensus       228 qslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  228 QSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             hhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            999999999876 655555433    347999999999999999999999988876554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.05  E-value=0.61  Score=42.24  Aligned_cols=186  Identities=23%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC---Cchh
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSF---PENR  251 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~---~~~~  251 (372)
                      +...+..+.......|+.+...+.++-.....-..+.. ....++.+.+.++.+.. +-+..|+.++.-++..   .+..
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence            44455555566788999999998888655543334422 23578888888888776 5566777777777654   2344


Q ss_pred             HHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhC---C-HhHHHHHHhccchHHHHHH--HHhc-C---------C
Q 017402          252 KRVVSCGAVPILMRLADAG------LERAVEVLSILVK---C-KEGREEMMRVSGCVGVFVK--MLKT-G---------S  309 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~---~-~~~~~~i~~~~g~i~~L~~--ll~~-~---------~  309 (372)
                      ..+.+ ...|.|...+..+      +..++.+|+.++.   . .+.....++   .+..+..  ..+. +         +
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCc
Confidence            45554 3677788887433      2334444444433   2 122221222   2332222  1221 1         2


Q ss_pred             hhHHHhHHHHHHHHhcCCHH-HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          310 SRAVQCSLFTLSCLCCCSQE-ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       310 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +.+.-.|+.+-.-|...-+. .....++ ..++.|..+|++++.+||.+|-..|..|-+
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34555555444444433233 2223333 369999999999999999999999987643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.04  E-value=0.84  Score=43.84  Aligned_cols=270  Identities=12%  Similarity=0.066  Sum_probs=159.2

Q ss_pred             chhHHHHhhccCCC---hHHHHHHHHHHHHHhhcChHHHHHHhhcCC-HHHHHH-HHhhcCCChhHHHHHHHHHhc-CCC
Q 017402           89 PQTLISVLTSKSSP---LESKLESLTQLTKLSKRDSASRRKLTESGA-VSAVLN-CLKIHSDGFTLQEKALSLLLN-LSL  162 (372)
Q Consensus        89 ~~~li~~L~~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~-i~~L~~-lL~~~~~~~~~~~~a~~~L~~-l~~  162 (372)
                      -|.+...+-+..++   ...+.+++..+.+.|.. +.-...+...+. +-.++. -++. ..+..++..|+.+|.+ +-.
T Consensus       131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~-et~~avRLaaL~aL~dsl~f  208 (858)
T COG5215         131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKN-ETTSAVRLAALKALMDSLMF  208 (858)
T ss_pred             chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHHH
Confidence            36777777665433   34678899999999964 222334434433 223332 3332 3567789999999987 332


Q ss_pred             Cccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          163 DDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       163 ~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      -..+-..=.+ .=.++..++.-..++.+++..+-+-|..+-... ..-..+.+ .-........++++++ ++...|...
T Consensus       209 v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd-~va~qavEf  286 (858)
T COG5215         209 VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQND-EVAIQAVEF  286 (858)
T ss_pred             HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcch-HHHHHHHHH
Confidence            2221111011 113445566666778899988888887775443 33333444 2344444567788888 888888876


Q ss_pred             HHhhcCCC-chhHHHH----------------hcCchHHHHHHHhhh--------------HHHHHHHHHHHhCCHhHHH
Q 017402          241 LYALTSFP-ENRKRVV----------------SCGAVPILMRLADAG--------------LERAVEVLSILVKCKEGRE  289 (372)
Q Consensus       241 L~~L~~~~-~~~~~i~----------------~~g~v~~L~~ll~~~--------------~e~a~~~L~~L~~~~~~~~  289 (372)
                      -+.+|..+ ++-..+-                -+.++|.|+.+|...              ...++...+.++.+     
T Consensus       287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-----  361 (858)
T COG5215         287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-----  361 (858)
T ss_pred             HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----
Confidence            65555422 1111111                224789999999431              12244444444443     


Q ss_pred             HHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       290 ~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      .|++ + .+.-+-.-+++.+-..++.|+.++..+-.+..+.+..-+-...+|.+.....+..--++..++|++-.+.++.
T Consensus       362 ~i~~-p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v  439 (858)
T COG5215         362 KIMR-P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV  439 (858)
T ss_pred             HhHH-H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence            2222 1 2222223344566677899999999987663344443344557888888888888889999999988777654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.01  E-value=0.72  Score=43.31  Aligned_cols=180  Identities=17%  Similarity=0.163  Sum_probs=116.4

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHhcCCCCc----cccccccccCChHHHHHHHhcC-------ChHHHHHHHHHHHHhccc
Q 017402          136 VLNCLKIHSDGFTLQEKALSLLLNLSLDD----DNKVGLVAEGAVSRVVAALRFG-------SPDCRAIAATIITSLAVV  204 (372)
Q Consensus       136 L~~lL~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~lv~~L~~~-------~~~~~~~a~~~L~~ls~~  204 (372)
                      +..+++  ..+.+-+-.|+-.+..+..++    -+++.+.++=|.+.+=++|.+.       +.-.+..+..+|.-++..
T Consensus        16 ~~~L~~--~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   16 CLKLLK--GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             HHHHhc--ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            444555  455666677777777776664    3577788888899999999652       233456677888888877


Q ss_pred             ccc--hhhhccccchHHHHHHHhhcCCchH------HHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh--hh---H
Q 017402          205 EVN--KATIGDYPYAINALVSLLQNGKLIR------EKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD--AG---L  271 (372)
Q Consensus       205 ~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~------~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~--~~---~  271 (372)
                      ++.  ...+.   ..||.|++.+....+++      ....+..+|..++..+.+...++..|+++.+-++-.  ++   .
T Consensus        94 pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   94 PELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence            653  33343   46999999998655433      788999999999999999999999999999987652  22   3


Q ss_pred             HHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          272 ERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       272 e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      +.++.++--+..    .++.-..+..   .+..+.+=+.......+-..+.+|..+
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444333332    2222233333   233443333333445566677777644

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.00  E-value=0.31  Score=46.39  Aligned_cols=152  Identities=18%  Similarity=0.165  Sum_probs=111.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCC--ChhHHHHHHHHHhcCCCCcccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSD--GFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      -.+.+.+.++  +...+..|++.|..++. ++.+...++...++..|..++.+...  ..++....++++..+-.+.-..
T Consensus        86 ~~i~e~l~~~--~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   86 KRIMEILTEG--NNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHhCC--CcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            3578888877  77778889999999998 67799999999999999999995333  4567788888887776654433


Q ss_pred             ccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          168 VGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      -..+...+|..++.+.+-  -+..+-..|...|.++...+. ....+.+ .--+..|+..++..+. .+...|...|-.+
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~-~i~~~aial~nal  240 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQ-RIQTCAIALLNAL  240 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence            344455566666666532  366777888899988887775 4455555 5678999999988777 6777766666555


Q ss_pred             cC
Q 017402          245 TS  246 (372)
Q Consensus       245 ~~  246 (372)
                      ..
T Consensus       241 ~~  242 (713)
T KOG2999|consen  241 FR  242 (713)
T ss_pred             Hh
Confidence            43

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.0043  Score=55.99  Aligned_cols=46  Identities=28%  Similarity=0.600  Sum_probs=38.4

Q ss_pred             CCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcCC--CCCCCCCC
Q 017402            6 PDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGH--RTCPITKL   51 (372)
Q Consensus         6 ~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~--~~CP~c~~   51 (372)
                      ..-|.|||-.+--.   .|+.+.|||..++..+.+....+.  +.||.|-.
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            35689999998654   578999999999999999887776  78999954

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.92  E-value=0.59  Score=47.43  Aligned_cols=215  Identities=15%  Similarity=0.145  Sum_probs=124.8

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL  170 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  170 (372)
                      .++.-+.++.++...|.-|+-.++.+-...+    .-...+.-..+++.+.  +.+.+++..|..+|++++.+.-     
T Consensus       821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~--sp~edvksAAs~ALGsl~vgnl-----  889 (1233)
T KOG1824|consen  821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFN--SPSEDVKSAASYALGSLAVGNL-----  889 (1233)
T ss_pred             HHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcC--CChHHHHHHHHHHhhhhhcCch-----
Confidence            3565566554555667777777777665432    1112233345667777  7889999999999999986532     


Q ss_pred             cccCChHHHHHHHhcC--ChHHHHHHH-HHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          171 VAEGAVSRVVAALRFG--SPDCRAIAA-TIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~~--~~~~~~~a~-~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                        ...+|.++....++  .......+. .+|..-+. +..+..+   ..+...|.+-.....+ .++.-.+.+|+.|+..
T Consensus       890 --~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv-d~~~~~v---~~IW~lL~k~cE~~ee-gtR~vvAECLGkL~l~  962 (1233)
T KOG1824|consen  890 --PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV-DGLKPYV---EKIWALLFKHCECAEE-GTRNVVAECLGKLVLI  962 (1233)
T ss_pred             --HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc-chhhhhH---HHHHHHHHHhcccchh-hhHHHHHHHhhhHHhC
Confidence              23567777777654  222333332 22222221 1111111   1344444454444445 6788888899888875


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC  322 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  322 (372)
                      +..       ..+|.|-..+.++    +-.++.+... ++..+..-+.+..  ..+..+..++++++..+++.|+.++-.
T Consensus       963 epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk--~~ig~fl~~~~dpDl~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen  963 EPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK--QQIGDFLKLLRDPDLEVRRVALVVLNS 1033 (1233)
T ss_pred             ChH-------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH--HHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            432       1445555555444    2223333332 2333333344444  368888899999999999999999999


Q ss_pred             HhcCCHHHHH
Q 017402          323 LCCCSQEICG  332 (372)
Q Consensus       323 l~~~~~~~~~  332 (372)
                      .+++.|..-.
T Consensus      1034 aahNKpslIr 1043 (1233)
T KOG1824|consen 1034 AAHNKPSLIR 1043 (1233)
T ss_pred             HHccCHhHHH
Confidence            8877664433

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.0047  Score=51.74  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHh
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD   40 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~   40 (372)
                      .+.+..+|.+|++.++|||+.+-||.|||.||.+++.
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            3556678999999999999999999999999999874

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.0048  Score=54.97  Aligned_cols=46  Identities=24%  Similarity=0.430  Sum_probs=39.1

Q ss_pred             CccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .-.|=||+.--+|-++++|.|. .|..|-+... .....||.||+++.
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence            4679999999999999999995 6999987655 33667999999887

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.79  E-value=0.0037  Score=39.61  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=36.4

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..+..|-.|...-...++++|||..|+.|..-+-   -.-||.|..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~   50 (55)
T PF14447_consen    5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFE   50 (55)
T ss_pred             ccceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCccc
Confidence            3456778888888888999999999998875433   346999999887

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.74  E-value=0.008  Score=38.01  Aligned_cols=45  Identities=29%  Similarity=0.583  Sum_probs=22.9

Q ss_pred             CccccCCcccCCCcee-cCCchH--hhHHH-HHHHHhcCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHT--FDRAS-IQRWLDSGHRTCPITKLP   52 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~c-i~~~~~~~~~~CP~c~~~   52 (372)
                      .+.||++...+..|+- ..|.|.  |+..- ++.....+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            3689999999999996 569996  44322 222223345689999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=0.59  Score=46.52  Aligned_cols=124  Identities=11%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             HHHhhcCCchHHHHHHHHHHHhhcCCCc---hhHHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402          222 VSLLQNGKLIREKKEAATALYALTSFPE---NRKRVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMMRVSG  296 (372)
Q Consensus       222 v~ll~~~~~~~~~~~a~~aL~~L~~~~~---~~~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g  296 (372)
                      +++|..++. +..+.-.-.|..++.+.+   |.-..+=-..|..++.+-..+  ++.|+.+|+.+..+.+..-..+.   
T Consensus       258 LriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva---  333 (866)
T KOG1062|consen  258 LRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA---  333 (866)
T ss_pred             HHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee---
Confidence            344444444 566666666767666443   222222223566666665443  77888888887776555433332   


Q ss_pred             hHHHHH------------------HHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHH
Q 017402          297 CVGVFV------------------KMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRN  357 (372)
Q Consensus       297 ~i~~L~------------------~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~  357 (372)
                       +..|.                  +.+++.+..+++.|+..+..|... ...+      ..++.|+.++...+++.|..
T Consensus       334 -Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~------~mv~eLl~fL~~~d~~~k~~  404 (866)
T KOG1062|consen  334 -LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR------VMVKELLEFLESSDEDFKAD  404 (866)
T ss_pred             -hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH------HHHHHHHHHHHhccHHHHHH
Confidence             33444                  444444455555555554444432 1111      14556666676666666543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.70  E-value=0.0041  Score=51.80  Aligned_cols=47  Identities=23%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CccccCCcc-cCCCce--e--cC-CchHhhHHHHHHHHhcCCCCCC--CCCCCCC
Q 017402            8 DFKCPISLE-IMSDPV--I--LS-SGHTFDRASIQRWLDSGHRTCP--ITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~-~~~~Pv--~--~~-cgh~~c~~ci~~~~~~~~~~CP--~c~~~~~   54 (372)
                      +-.||+|.. .+-+|=  .  -| |=|..|.+|+.+.|+.|+..||  -|++-+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            458999994 566662  1  24 9999999999999999999999  5766554

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.011  Score=42.42  Aligned_cols=27  Identities=30%  Similarity=0.737  Sum_probs=23.8

Q ss_pred             CCchHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402           25 SSGHTFDRASIQRWLDSGHRTCPITKLP   52 (372)
Q Consensus        25 ~cgh~~c~~ci~~~~~~~~~~CP~c~~~   52 (372)
                      .|.|.|...||.+|+.+ +..||.|.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            59999999999999987 6679999764

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.016  Score=58.60  Aligned_cols=71  Identities=37%  Similarity=0.587  Sum_probs=64.8

Q ss_pred             CCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      +++++|.=|+...+|+|||.+| .|++.||.=|.+++.. ..+-|.||.+++ ...+.||..++..+..|.+..
T Consensus       866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt-~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLT-EDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCc-hhhcCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998 9999999999998875 667899999999 999999999999999998764

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.0035  Score=59.63  Aligned_cols=42  Identities=29%  Similarity=0.544  Sum_probs=34.2

Q ss_pred             CCCCCCccccCCcccC----CCceecCCchHhhHHHHHHHHhcCCCCCC
Q 017402            3 TQFPDDFKCPISLEIM----SDPVILSSGHTFDRASIQRWLDSGHRTCP   47 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~----~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP   47 (372)
                      ..|.+-+.|+||...|    ..||.+-|||+.|+.|.+....   .+||
T Consensus         6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp   51 (861)
T KOG3161|consen    6 LKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP   51 (861)
T ss_pred             hhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence            3466788999998765    4899999999999999987553   3688

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=1.6  Score=42.97  Aligned_cols=242  Identities=15%  Similarity=0.122  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR  184 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~  184 (372)
                      .-=|+..+.|+-.  .++++.+..  -|   -++|.+.+..+-++..|+-+|..|-.. ++.   +-..+..+.++.+|.
T Consensus       128 v~LAL~~I~niG~--re~~ea~~~--DI---~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~  197 (938)
T KOG1077|consen  128 VCLALHCIANIGS--REMAEAFAD--DI---PKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLD  197 (938)
T ss_pred             HHHHHHHHHhhcc--HhHHHHhhh--hh---HHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhC
Confidence            3345555555443  234444422  23   366774444455676666666665444 332   223578999999998


Q ss_pred             cCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcCCc------------hHHHHHHHHHHHhhcCC--C
Q 017402          185 FGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNGKL------------IREKKEAATALYALTSF--P  248 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~------------~~~~~~a~~aL~~L~~~--~  248 (372)
                      +.+..+...+...+..++...+  ++..+.   -++..|.........            +=+....+++|.+.-..  +
T Consensus       198 D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~---~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~  274 (938)
T KOG1077|consen  198 DQHMGVVTAATSLIEALVKKNPESYKTCLP---LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP  274 (938)
T ss_pred             ccccceeeehHHHHHHHHHcCCHHHhhhHH---HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence            8888888888888888876542  333332   244444444332211            23555666666666332  2


Q ss_pred             chhHHHHhcCchHHHHHHHhhh----------HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402          249 ENRKRVVSCGAVPILMRLADAG----------LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~----------~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                      .+|..+.+  ....++...+.+          ..+ .+.-.-+|+.+-+.-..+..  .++..|..++.+....+|-.|+
T Consensus       275 ~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaL  350 (938)
T KOG1077|consen  275 STRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLAL  350 (938)
T ss_pred             hHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhH
Confidence            34544443  334444443321          111 22222234433333333333  2788999999888888899999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHhc
Q 017402          318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~  367 (372)
                      ..+..+|.. +.....+...  .+.++..++ ..+..+|++|..+|=.|-+
T Consensus       351 Esm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD  398 (938)
T KOG1077|consen  351 ESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD  398 (938)
T ss_pred             HHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            888888865 3333444444  777888888 5578889999988865543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.53  E-value=0.66  Score=38.29  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=71.0

Q ss_pred             ChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh
Q 017402          146 GFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL  225 (372)
Q Consensus       146 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll  225 (372)
                      ++.++..++.++..|+..-.+-.    ...++.+...|+++++.+|..|...|.+|...+-.|..    ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence            46788888888888875533211    45688899999999999999999999999765432222    23447888888


Q ss_pred             hcCCchHHHHHHHHHHHhhcCC
Q 017402          226 QNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       226 ~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      .++++ +++..|..++..+...
T Consensus        73 ~D~~~-~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENP-EIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCH-HHHHHHHHHHHHHHHh
Confidence            77777 9999999999998875

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.49  E-value=0.1  Score=35.83  Aligned_cols=60  Identities=20%  Similarity=0.189  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh
Q 017402          234 KKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMR  293 (372)
Q Consensus       234 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~  293 (372)
                      ++.|++++.++++.+.+...+.+.++++.++++....     +-.|..+|.-++...++.+.+.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            6789999999999999998888889999999999654     67899999999999999988776

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.45  E-value=0.24  Score=45.25  Aligned_cols=183  Identities=11%  Similarity=0.116  Sum_probs=134.1

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~  168 (372)
                      |+++..|-++-++++.-..+...|+...+ .+...+.+.....+..+++...  ..+-++...|..++.. |..+...-.
T Consensus       124 peil~~L~~gy~~~dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a  200 (335)
T PF08569_consen  124 PEILDILLRGYENPDIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVA  200 (335)
T ss_dssp             THHHHHHHHGGGSTTTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHHHHhcCccccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHH
Confidence            67888888877788988889999999887 5667777778888888888888  7888999999999988 445444333


Q ss_pred             ccccc---CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh---hccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          169 GLVAE---GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT---IGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       169 ~i~~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .+...   ..+...-.+|.+++.-++.++...|+.+-.+..|...   .+....-+..++.+|++.+. .++-+|..+..
T Consensus       201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk-~Iq~eAFhvFK  279 (335)
T PF08569_consen  201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSK-NIQFEAFHVFK  279 (335)
T ss_dssp             HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-H-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcch-hhhHHHHHHHH
Confidence            33332   3566778888999999999999999999888766442   33436789999999999877 89999999887


Q ss_pred             hhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCH
Q 017402          243 ALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCK  285 (372)
Q Consensus       243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~  285 (372)
                      -...++.-         -+++.++|...+++.+..|.++....
T Consensus       280 vFVANp~K---------~~~I~~iL~~Nr~kLl~fl~~f~~~~  313 (335)
T PF08569_consen  280 VFVANPNK---------PPPIVDILIKNREKLLRFLKDFHTDR  313 (335)
T ss_dssp             HHHH-SS----------BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred             HHHhCCCC---------ChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            66655532         23455555555677777777666654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.45  E-value=0.038  Score=40.55  Aligned_cols=90  Identities=14%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHH
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAAL  183 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L  183 (372)
                      |..++..|...+..-+..-.... .-++++++..+.  +.+..++..|+.+|.|++..-.  ..+..  ...++.|.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFD--DQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            56778888877765443321111 247889999998  8999999999999999986532  22322  56778888888


Q ss_pred             hcCChHHHHHHHHHHHHh
Q 017402          184 RFGSPDCRAIAATIITSL  201 (372)
Q Consensus       184 ~~~~~~~~~~a~~~L~~l  201 (372)
                      .+.++.++..| ..|-++
T Consensus        78 ~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   78 ADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             cCCchhHHHHH-HHHHHH
Confidence            88888877655 444443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.33  E-value=0.084  Score=43.94  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             chHHHHHHHhhcCCchHHHHHHHHHHHh-hcCCC-chhHHHHhcCchHHHHHHHhhh-------------HHHHHHHHHH
Q 017402          216 YAINALVSLLQNGKLIREKKEAATALYA-LTSFP-ENRKRVVSCGAVPILMRLADAG-------------LERAVEVLSI  280 (372)
Q Consensus       216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~-~~~~~i~~~g~v~~L~~ll~~~-------------~e~a~~~L~~  280 (372)
                      .-...+++.+++... ..  ..+.-|.- |-..+ .=...|++.||+..|+..|..-             ...++..+..
T Consensus        66 ~~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            456666777766544 11  22222221 22222 2356788899999999988321             2348889999


Q ss_pred             HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402          281 LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       281 L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  325 (372)
                      +.....|...+..+.+++..|+..+.+.+..++..++.+|..+|.
T Consensus       143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred             HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999883

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.74  Score=47.34  Aligned_cols=246  Identities=15%  Similarity=0.153  Sum_probs=149.2

Q ss_pred             HHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCC---
Q 017402          111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGS---  187 (372)
Q Consensus       111 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~---  187 (372)
                      ..|..+.+.+.+|...+.++.|+..++.++-    +.+.+...++++..|-..+..+.   .+..+-.+|..|+++-   
T Consensus       664 DcLisllKnnteNqklFreanGvklilpfli----ndehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  664 DCLISLLKNNTENQKLFREANGVKLILPFLI----NDEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHhccchhhHHHHhhcCceEEEEeee----chHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceec
Confidence            3455666778889999999999999888885    23556666777766554433322   3455677888887741   


Q ss_pred             ---------hHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc---------CCchHHHHHHHHHHH-----h
Q 017402          188 ---------PDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN---------GKLIREKKEAATALY-----A  243 (372)
Q Consensus       188 ---------~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~---------~~~~~~~~~a~~aL~-----~  243 (372)
                               ...+....++++..-..+ ..+..+++ .+++..|..+|..         ..+.-+...-...|.     .
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla  815 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA  815 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence                     233445567777765333 45666777 6777777766642         111111222222222     2


Q ss_pred             hcCCCchhHHHHhcCchHHHHHHHhhh-----------------------------HHH-HHHHHHHHhC----------
Q 017402          244 LTSFPENRKRVVSCGAVPILMRLADAG-----------------------------LER-AVEVLSILVK----------  283 (372)
Q Consensus       244 L~~~~~~~~~i~~~g~v~~L~~ll~~~-----------------------------~e~-a~~~L~~L~~----------  283 (372)
                      ++.++.|+.++-..=.-+.+..+|...                             .|. |+.-+-.+-.          
T Consensus       816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG  895 (2799)
T KOG1788|consen  816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG  895 (2799)
T ss_pred             HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence            344556665543211112222222110                             111 1111111111          


Q ss_pred             -CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh---cccHHHHHHHH
Q 017402          284 -CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE---DDNEKVRRNAN  359 (372)
Q Consensus       284 -~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~---~~~~~v~~~a~  359 (372)
                       ....++.|.. .|++..|.+.+...+++.+-.-+..+..++..++.++...-..|+++.|++++.   +++...-.+|-
T Consensus       896 qfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshal  974 (2799)
T KOG1788|consen  896 QFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL  974 (2799)
T ss_pred             CcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence             0123445666 789999999998889999999999999999999999888889999999999875   35555556666


Q ss_pred             HHHHHH
Q 017402          360 NLIQTL  365 (372)
Q Consensus       360 ~~L~~l  365 (372)
                      +++..|
T Consensus       975 kIvemL  980 (2799)
T KOG1788|consen  975 KIVEML  980 (2799)
T ss_pred             HHHHHH
Confidence            666554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.29  E-value=0.94  Score=41.04  Aligned_cols=174  Identities=13%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             CCChhHHHHHHHHHhcCCCCcccccccc--ccCChHHHHHHHhcCChHHHHHHHHHHHHhccc---ccchhhhccccchH
Q 017402          144 SDGFTLQEKALSLLLNLSLDDDNKVGLV--AEGAVSRVVAALRFGSPDCRAIAATIITSLAVV---EVNKATIGDYPYAI  218 (372)
Q Consensus       144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i  218 (372)
                      +.....|+.++..|.++....-....+.  ..-.++.+.+.++.+..+-+..|+.++.-++..   .+....+..  ...
T Consensus        54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~  131 (309)
T PF05004_consen   54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELK  131 (309)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHH
Confidence            4556677777777766543322112121  134677888888888777777788877777655   233444444  588


Q ss_pred             HHHHHHhhcCCc-hHHHHHHHHHHHhhcC---CC-chhHHHHhcCchHHHHH--HHhhh--------------HHHH---
Q 017402          219 NALVSLLQNGKL-IREKKEAATALYALTS---FP-ENRKRVVSCGAVPILMR--LADAG--------------LERA---  274 (372)
Q Consensus       219 ~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~---~~-~~~~~i~~~g~v~~L~~--ll~~~--------------~e~a---  274 (372)
                      |.|...+.+... ..++..++.+|.-++.   .+ +......+  .+..+..  .++.+              .-.|   
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            899999888754 3555666666665543   22 22221111  1221111  11110              1112   


Q ss_pred             HHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          275 VEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       275 ~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      ...|..+.....-. ....  ..++.|+.+|.+.+..+|..|-.+|.-|.
T Consensus       210 W~lLlt~~~~~~~~-~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  210 WALLLTTLPDSKLE-DLLE--EALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHhcCCHHHHH-HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            23333222221122 3333  47999999999999999998888877663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.011  Score=52.31  Aligned_cols=48  Identities=21%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .++-.||||.----..|..||+|.-|+.||.+++.. ...|-.|+..+.
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            467889999987777888999999999999999875 566888876555

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.18  E-value=0.22  Score=43.29  Aligned_cols=89  Identities=20%  Similarity=0.234  Sum_probs=73.7

Q ss_pred             HHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-
Q 017402          274 AVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-  350 (372)
Q Consensus       274 a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-  350 (372)
                      |+.+|.-++- ++..|..+.. ...+..|+.++. ..++.++..++.+|..+...++.+...+.+.||+..+..++++. 
T Consensus       111 aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~  189 (257)
T PF08045_consen  111 ALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS  189 (257)
T ss_pred             HHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence            5566666665 6667777766 789999999994 46788999999999999988899999999999999999999874 


Q ss_pred             -cHHHHHHHHHHHH
Q 017402          351 -NEKVRRNANNLIQ  363 (372)
Q Consensus       351 -~~~v~~~a~~~L~  363 (372)
                       +.++|-+...-|-
T Consensus       190 ~~~~~r~K~~EFL~  203 (257)
T PF08045_consen  190 TDRELRLKCIEFLY  203 (257)
T ss_pred             ccHHHhHHHHHHHH
Confidence             7788888777664

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.18  E-value=0.23  Score=40.13  Aligned_cols=144  Identities=19%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc-cccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD-NKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~-~~~~  169 (372)
                      ++..|......+++|..++-.+.++-   +..++.+.+. .-+.+-..+.  ..+.+-...+..++..+--. ++ ....
T Consensus         8 lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~--~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    8 LLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLD--EGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             HHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHC--CHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHc--cccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            55666542346788888888887773   2344444331 2223333343  34445667777777665433 33 3445


Q ss_pred             ccccCChHHHHHHHh--cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH-HHHHHHHHHHh
Q 017402          170 LVAEGAVSRVVAALR--FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR-EKKEAATALYA  243 (372)
Q Consensus       170 i~~~g~i~~lv~~L~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-~~~~a~~aL~~  243 (372)
                      +...|.++.++.+..  ..+...+..++.+|..-+.+..-+..|..  .+++.|-++++...+.. ++..|+-.|..
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            567899999999998  67888888888888887776666777766  67999999997555424 67777777764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.14  E-value=0.83  Score=44.28  Aligned_cols=92  Identities=14%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      .|++|.|..+|+  +....++.+.+..++.++..........+ -..-=.|+..|++.+.++|.+|...++.+|.     
T Consensus       687 ~~ilP~ltPILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~-----  759 (975)
T COG5181         687 SGILPSLTPILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR-----  759 (975)
T ss_pred             hhccccccHhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh-----
Confidence            588999999999  78889999999999999887444332222 1233457888889999999999999988863     


Q ss_pred             hhhccccchHHHHHHHhhcCCc
Q 017402          209 ATIGDYPYAINALVSLLQNGKL  230 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~  230 (372)
                       .|+- ..++..|++-|+.++-
T Consensus       760 -aiGP-qdvL~~LlnnLkvqeR  779 (975)
T COG5181         760 -AIGP-QDVLDILLNNLKVQER  779 (975)
T ss_pred             -hcCH-HHHHHHHHhcchHHHH
Confidence             3343 4677777777766543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.09  E-value=0.038  Score=41.82  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL  160 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l  160 (372)
                      .|+.+|..+ .++.+..-|...|+.++...|..|..+.+.|+=..+.+++.  +.+++++..|+.++..+
T Consensus        47 ~L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   47 KLIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence            477777543 37777777999999999999988888888899999999999  89999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.05  E-value=0.087  Score=36.20  Aligned_cols=67  Identities=12%  Similarity=0.119  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC
Q 017402          191 RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG  258 (372)
Q Consensus       191 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g  258 (372)
                      .+.|.+++.+++..+..-..+.+ .++++.++++....+.-.+|--|..+|.-++.+.++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            46789999999988777777766 69999999999876655899999999999999999988887765

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.03  E-value=0.49  Score=45.07  Aligned_cols=148  Identities=19%  Similarity=0.228  Sum_probs=107.1

Q ss_pred             hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHH--
Q 017402          217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGRE--  289 (372)
Q Consensus       217 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~--  289 (372)
                      ....+.+.+.+++. ..+..|..-|..++.+..-...++...++..|..++.++     .+.....|..++...+.--  
T Consensus        84 ~a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   84 YAKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            45677888888887 778789999999999998999999999999999999665     2233333344433211100  


Q ss_pred             -HHHhccchHHHHHHHH--hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          290 -EMMRVSGCVGVFVKML--KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       290 -~i~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                       ..+. ..+|...+.+.  +..+..+-..|+..|-++...+...++.+.++--++.|+..++..+..++.+|..++..|.
T Consensus       163 W~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             0111 22444444444  2244566789999999999888888888999888999999999999999999888886543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.67  Score=46.56  Aligned_cols=210  Identities=11%  Similarity=0.058  Sum_probs=130.4

Q ss_pred             CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH
Q 017402          144 SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS  223 (372)
Q Consensus       144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~  223 (372)
                      +.-+.++..++..|..+.........+...+++...+..|++.|.-+-.+|...+..|+..       .. ...+|-|.+
T Consensus       738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~-e~il~dL~e  809 (982)
T KOG4653|consen  738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP-EDILPDLSE  809 (982)
T ss_pred             CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc-hhhHHHHHH
Confidence            4456688889999998887765556666789999999999999988888888888887643       12 356777766


Q ss_pred             HhhcCCc---hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHH--HHHHh
Q 017402          224 LLQNGKL---IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGR--EEMMR  293 (372)
Q Consensus       224 ll~~~~~---~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~--~~i~~  293 (372)
                      --.+...   .+.+-..-.++.++... .+-.....+ -.+...++.++++    +..+++++++||..-..+  +.+.+
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e  888 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE  888 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence            3332211   13444455666666542 222221111 2445555555544    566888999998744432  22222


Q ss_pred             ccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhc---ChhHHHHHHhhc-ccHHHHHHHHHHHHHH
Q 017402          294 VSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKE---GVLDICMGLLED-DNEKVRRNANNLIQTL  365 (372)
Q Consensus       294 ~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~~~~l~~ll~~-~~~~v~~~a~~~L~~l  365 (372)
                         ++..++.+.+. ++..+|+.|+..+..+-.+-....-.+.+.   .....+..+... .++.+|.+|...|..+
T Consensus       889 ---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  889 ---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             ---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence               56666676654 678889999999988766433322333222   234444444444 4667788887776543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.91  E-value=0.055  Score=30.28  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=25.0

Q ss_pred             hhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          339 VLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       339 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ++|.+++++++.+++||.+|..+|..+.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999987754

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.91  E-value=3.3  Score=38.70  Aligned_cols=219  Identities=10%  Similarity=0.054  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc--CCCCccccccc--------cccCChH
Q 017402          108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN--LSLDDDNKVGL--------VAEGAVS  177 (372)
Q Consensus       108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~--l~~~~~~~~~i--------~~~g~i~  177 (372)
                      .|++.|..+....+..-..+.+.||+..+++.|+  .+-....+.  .-...  -...++.+...        .+.+.+.
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~--~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK   78 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ--YEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK   78 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH--HHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence            5778888888777777888899999999999998  332222221  00000  00001111111        1223333


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhh---ccccchHHHHHHHhhcCCc--hHHHHHHHHHHHhhcCCCc-h
Q 017402          178 RVVAALRFGSPDCRAIAATIITSLAV-VEVNKATI---GDYPYAINALVSLLQNGKL--IREKKEAATALYALTSFPE-N  250 (372)
Q Consensus       178 ~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i---~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~L~~~~~-~  250 (372)
                      .|++++               ..+.. .......+   .+.......|-..+++...  +.+...|+.++...-.++. .
T Consensus        79 ~lLk~l---------------~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~  143 (379)
T PF06025_consen   79 SLLKFL---------------SHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS  143 (379)
T ss_pred             HHHHHH---------------HHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence            333333               33222 22222222   2212445556666665443  4788889999998877655 5


Q ss_pred             hHHHHhcCchHHHHHHHh-hh---HHH----HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh-------hHHHh
Q 017402          251 RKRVVSCGAVPILMRLAD-AG---LER----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS-------RAVQC  315 (372)
Q Consensus       251 ~~~i~~~g~v~~L~~ll~-~~---~e~----a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~-------~~~~~  315 (372)
                      -..+.++|.++.+++.+. .+   ...    .-.++..||-+.+|.+.+.+ .+.++.+.+++.+..-       ..-..
T Consensus       144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~  222 (379)
T PF06025_consen  144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASN  222 (379)
T ss_pred             hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHH
Confidence            567778899999999997 44   222    33778889999999999999 6899999998865221       11112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHh
Q 017402          316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLL  347 (372)
Q Consensus       316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll  347 (372)
                      --..+-.|.++.|..+..+++. ++..+-++.
T Consensus       223 lG~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~  253 (379)
T PF06025_consen  223 LGNSFDELMRHHPSLKPDIIDA-IIKILDRLV  253 (379)
T ss_pred             HHHHHHHHHccCHHHHHHHHHH-HHHHHHHHH
Confidence            2234555677778887777665 344333333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.91  E-value=3.9  Score=39.55  Aligned_cols=210  Identities=19%  Similarity=0.182  Sum_probs=104.3

Q ss_pred             CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH
Q 017402          144 SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS  223 (372)
Q Consensus       144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~  223 (372)
                      +.-..+...+++++..++...-.-. ++ ...+..|-.+|++.....|-.|.++|-.|+.....+.....  --++.|+.
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~nv~~~-~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN--~evEsLIs  350 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEENVGSQ-FV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN--KEVESLIS  350 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhccCHH-HH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC--hhHHHHhh
Confidence            3446677888888887765431111 00 22455566667777888899999999999987766655554  23444432


Q ss_pred             HhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCC-HhHHHH--------HHh
Q 017402          224 LLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKC-KEGREE--------MMR  293 (372)
Q Consensus       224 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~-~~~~~~--------i~~  293 (372)
                         +.+- .+...|...|.. ..++++...++.  .|+.++.=+.++ .--++.++..||.. +..+..        +..
T Consensus       351 ---d~Nr-~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~  423 (898)
T COG5240         351 ---DENR-TISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ  423 (898)
T ss_pred             ---cccc-cchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence               3332 344444443322 123344444433  233333333333 23344444444432 111111        112


Q ss_pred             ccch-------HHHHHHHHhcCChhHHHhHHHHHHHHhcCC--HHHH----HHHHhcC--------hhHHHHHHhhcccH
Q 017402          294 VSGC-------VGVFVKMLKTGSSRAVQCSLFTLSCLCCCS--QEIC----GDSRKEG--------VLDICMGLLEDDNE  352 (372)
Q Consensus       294 ~~g~-------i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~----~~~~~~g--------~~~~l~~ll~~~~~  352 (372)
                       +|+       ++.+..++. ..|..++.|+..|...-..+  ++..    ..+.++|        .+..+.+-+--.|.
T Consensus       424 -eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~  501 (898)
T COG5240         424 -EGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN  501 (898)
T ss_pred             -cccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh
Confidence             332       455555553 34566777766555543221  1111    1122333        34444444444566


Q ss_pred             HHHHHHHHHHHHHh
Q 017402          353 KVRRNANNLIQTLS  366 (372)
Q Consensus       353 ~v~~~a~~~L~~l~  366 (372)
                      -+|.+|..+|+.+-
T Consensus       502 ivRsaAv~aLskf~  515 (898)
T COG5240         502 IVRSAAVQALSKFA  515 (898)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777776543

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.78  E-value=0.015  Score=57.83  Aligned_cols=45  Identities=20%  Similarity=0.451  Sum_probs=37.8

Q ss_pred             ccccCCcccCCCceecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      +.|++|.+ ..+|+...|||.||+.|+...+... ...||.|+..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            78999999 7788888999999999999988653 346999987655

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.74  E-value=0.63  Score=39.24  Aligned_cols=143  Identities=14%  Similarity=0.094  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcccccchhhhccccc---hHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHH
Q 017402          192 AIAATIITSLAVVEVNKATIGDYPY---AINALVSLLQNGKL-IREKKEAATALYALTSFPE--NRKRVVSCGAVPILMR  265 (372)
Q Consensus       192 ~~a~~~L~~ls~~~~~~~~i~~~~g---~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~  265 (372)
                      -+|...|.-++++++.|..+.+ +-   .+-+.+....+.+. .-.+..+++++..|..+++  ....+....+||.+++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            3566777778888888877765 32   33344444443322 2577889999999998765  5566667799999999


Q ss_pred             HHhhh----HHHHHHHHHHHhCCHhHHHHHHhcc-------chHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402          266 LADAG----LERAVEVLSILVKCKEGREEMMRVS-------GCVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGD  333 (372)
Q Consensus       266 ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~  333 (372)
                      +++.+    +-.++.++..+-.++.|-+.++.+-       ..+..++.-+ +.++.+...++.++-..+|.. ++.|..
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR~l  275 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHARAL  275 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHHHH
Confidence            99777    3357788888888888887766631       2233333333 446778889999999998876 877766


Q ss_pred             HHh
Q 017402          334 SRK  336 (372)
Q Consensus       334 ~~~  336 (372)
                      +..
T Consensus       276 L~~  278 (315)
T COG5209         276 LSS  278 (315)
T ss_pred             Hhc
Confidence            543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.64  E-value=0.98  Score=42.49  Aligned_cols=262  Identities=18%  Similarity=0.152  Sum_probs=139.8

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccccccCC
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGLVAEGA  175 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~~~g~  175 (372)
                      ...+|.++++.|..++..-.-.+-.+++.  ...+-.-+.  +..+.+++.++..+..+-..      ++.-+.=...|.
T Consensus       268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~--~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~  343 (728)
T KOG4535|consen  268 PSPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMG--EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAP  343 (728)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCC--CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhcc
Confidence            34689999999999887433222222221  222222333  56788999999988776432      222221112221


Q ss_pred             hHHHH------HHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          176 VSRVV------AALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       176 i~~lv------~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      +-.+.      .... +..+..+..+|.++.+++...-++-.-......+..+...-.+++. -++..|.+++.-+..++
T Consensus       344 fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~-lv~~aA~Ra~~VyVLHp  422 (728)
T KOG4535|consen  344 FWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR-LVKAAASRALGVYVLHP  422 (728)
T ss_pred             HHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH-HHHHHHHhhceeEEecc
Confidence            11111      1111 2245567778888888875442222211111222233332212222 45667777777777777


Q ss_pred             chhHHHH-hcCchHHHHHHHhh-h---HHHHHHHHHHHhC-----CHh---HHHHHHhccchHHHHHHHHh---cCChhH
Q 017402          249 ENRKRVV-SCGAVPILMRLADA-G---LERAVEVLSILVK-----CKE---GREEMMRVSGCVGVFVKMLK---TGSSRA  312 (372)
Q Consensus       249 ~~~~~i~-~~g~v~~L~~ll~~-~---~e~a~~~L~~L~~-----~~~---~~~~i~~~~g~i~~L~~ll~---~~~~~~  312 (372)
                      ..+.... -..+...++..+.+ .   ++++.+.++|++.     .+.   ....+..  -.+..++..-.   ....++
T Consensus       423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg--~ll~~~~~~A~~~~Ad~dkV  500 (728)
T KOG4535|consen  423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG--LLLLKMLRSAIEASADKDKV  500 (728)
T ss_pred             chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH--HHHHHHHHHHHHhhhhhhhh
Confidence            6554332 22333444444433 3   7889999998876     111   1122221  12333333221   135678


Q ss_pred             HHhHHHHHHHHhcCCH---H-HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402          313 VQCSLFTLSCLCCCSQ---E-ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS  370 (372)
Q Consensus       313 ~~~a~~~L~~l~~~~~---~-~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  370 (372)
                      +.+|+.+|.++...-.   + .-.++++....+.+....-.++-.||.+|+-++.+|-.|+-
T Consensus       501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence            8899999999876411   1 11233333344444445556788999999999999988874

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.63  E-value=0.28  Score=39.57  Aligned_cols=141  Identities=21%  Similarity=0.225  Sum_probs=94.1

Q ss_pred             ChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chh
Q 017402          175 AVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP-ENR  251 (372)
Q Consensus       175 ~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~  251 (372)
                      -++.++..|..  ..+++|..+.-++..+-  +..+....+  -+-+.+-.++..... +....+..++..|-..+ +..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~-d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEM-DSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHC-CHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccc-hhHHHHHHHHHHHhCCCHHHH
Confidence            34556666653  57888888888887772  333444322  222333333333334 67888888898888744 555


Q ss_pred             HHHH-hcCchHHHHHHHh--hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChh-HHHhHHHHHHH
Q 017402          252 KRVV-SCGAVPILMRLAD--AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSR-AVQCSLFTLSC  322 (372)
Q Consensus       252 ~~i~-~~g~v~~L~~ll~--~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~~  322 (372)
                      ..+. ..|.++.++.++.  +.    ...++.+|..-|.+...|..+..+  +++.|-+..+. .++. ++..|+-+|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~--~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN--YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH--CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            5554 6688899999997  33    456788888888888889888884  79999898854 4455 67777766643

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.63  E-value=1.1  Score=39.84  Aligned_cols=219  Identities=14%  Similarity=0.115  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-cCChHHHH
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVV  180 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv  180 (372)
                      +-.|.-|++.+.++.. .++.|..+-. ...-..++.+++++-++.++|...+-++..|+.++...+.|-+ .+.+..++
T Consensus       163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3456777788888887 5667776644 4455668888887657789999999999999998776543333 46777788


Q ss_pred             HHHhcC-ChHHHHHHHHHHHHhcccccchhhhcc--ccchHHHHHHHhhcC--CchHHHHH---------------HHH-
Q 017402          181 AALRFG-SPDCRAIAATIITSLAVVEVNKATIGD--YPYAINALVSLLQNG--KLIREKKE---------------AAT-  239 (372)
Q Consensus       181 ~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~g~i~~Lv~ll~~~--~~~~~~~~---------------a~~-  239 (372)
                      ++.+.. -..+-..+++++.|+... ..+..|..  ..|-+..-+..|...  ++.+++..               ... 
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            888764 455667888999998752 22222222  013234444444332  11111110               000 


Q ss_pred             -HHHh-----hcCCC---------chhHHHHhc--CchHHHHHHHhhh-----HHHHHHHHHHHhC-CHhHHHHHHhccc
Q 017402          240 -ALYA-----LTSFP---------ENRKRVVSC--GAVPILMRLADAG-----LERAVEVLSILVK-CKEGREEMMRVSG  296 (372)
Q Consensus       240 -aL~~-----L~~~~---------~~~~~i~~~--g~v~~L~~ll~~~-----~e~a~~~L~~L~~-~~~~~~~i~~~~g  296 (372)
                       -+..     |+.++         .|...+.+.  ..+..|.+++++.     ...|+.=+..+.+ .++++.-+.. .|
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K-yg  399 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK-YG  399 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH-hh
Confidence             0111     22222         255555544  3577888888554     2335555555555 6778888887 78


Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      +-..+..++.+.+++++-.|+.++..+-
T Consensus       400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999987753

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=94.62  E-value=0.015  Score=56.67  Aligned_cols=68  Identities=24%  Similarity=0.489  Sum_probs=50.8

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      ...+.||||...+++|+.+.|.|.||+.|+...+..  +...||+|+.... ....+......++++....
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vqe~lk   88 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSKESLK   88 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHHHhcC
Confidence            346789999999999999999999999998765532  3568999997666 5555445555566655544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.59  E-value=0.17  Score=42.13  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhc-------CCChhHHHHHHHHHhcCC
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIH-------SDGFTLQEKALSLLLNLS  161 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~~a~~~L~~l~  161 (372)
                      ..++..|.+...+.    +.+..|...-+. ...--+.|++.||+..|+++|...       ..+.+.+..++++|..+.
T Consensus        69 ~~~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   69 EWYIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCccH----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            44777887653222    344555443333 334577888999999999999641       134578899999999998


Q ss_pred             CCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 017402          162 LDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLA  202 (372)
Q Consensus       162 ~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls  202 (372)
                      .+..+...+.+ .+++..|+..|.+.+..++..++.+|..++
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            88777776665 789999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.049  Score=49.11  Aligned_cols=64  Identities=30%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             ccccCCcccCC------CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC----CCCCCCccHHHHHHHHHH
Q 017402            9 FKCPISLEIMS------DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP----DQPSLIPNHALRSLISNF   72 (372)
Q Consensus         9 ~~C~ic~~~~~------~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~----~~~~~~~n~~l~~~i~~~   72 (372)
                      +.|-||.+.|.      -|..+.|||++|..|+......+...||.||.+..    ....+..|..+...++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            56889988764      57788999999999998877766678999998843    123466777777777665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=0.025  Score=56.00  Aligned_cols=42  Identities=19%  Similarity=0.435  Sum_probs=35.5

Q ss_pred             CccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPL   53 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~   53 (372)
                      .-.|..|.-.+.-|++ ..|||.|+++|++    .+...||.|+...
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence            3579999999999976 6899999999998    3577899997633

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=6.5  Score=39.55  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +|.+.++.+...++.+.++++...    .   ...++++|+.+|++...  ++.-.+..+..++
T Consensus       295 Ll~S~n~sVVmA~aql~y~lAP~~----~---~~~i~kaLvrLLrs~~~--vqyvvL~nIa~~s  349 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLAPKN----Q---VTKIAKALVRLLRSNRE--VQYVVLQNIATIS  349 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhCCHH----H---HHHHHHHHHHHHhcCCc--chhhhHHHHHHHH
Confidence            334567788888888888887433    1   13578888888887653  4444444444444

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.18  E-value=0.076  Score=29.71  Aligned_cols=28  Identities=25%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAV  203 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~  203 (372)
                      +|.++++++++++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=94.08  E-value=0.18  Score=42.99  Aligned_cols=85  Identities=13%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhCCHhHHHHHHhc------cchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHH-HHHHhcChhHH
Q 017402          271 LERAVEVLSILVKCKEGREEMMRV------SGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEIC-GDSRKEGVLDI  342 (372)
Q Consensus       271 ~e~a~~~L~~L~~~~~~~~~i~~~------~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~~~~  342 (372)
                      +..++.+|..|+..+.+.+-+..+      +..+..|++++. ++++..+|.|+.+|.++|..+...+ ....+.+.+..
T Consensus       141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~  220 (257)
T PF12031_consen  141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISH  220 (257)
T ss_pred             HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHH
Confidence            455666666666666665555542      224556666664 3678889999999999999877665 45577889999


Q ss_pred             HHHHhhcccHHHH
Q 017402          343 CMGLLEDDNEKVR  355 (372)
Q Consensus       343 l~~ll~~~~~~v~  355 (372)
                      |+.++++....++
T Consensus       221 Li~FiE~a~~~~~  233 (257)
T PF12031_consen  221 LIAFIEDAEQNAH  233 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998654443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=1.4  Score=45.04  Aligned_cols=249  Identities=18%  Similarity=0.167  Sum_probs=137.9

Q ss_pred             HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh------cCCChhHHHHHHHHHhcCCCC---ccccccccccCChHH
Q 017402          108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI------HSDGFTLQEKALSLLLNLSLD---DDNKVGLVAEGAVSR  178 (372)
Q Consensus       108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~~g~i~~  178 (372)
                      .|+..+..++..  +.+..+  .|.++.+++.|..      ...++.-.+-|+.++.+|+.-   ...-+...+.=.+..
T Consensus       391 Aa~~~l~~~~~K--R~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h  466 (1010)
T KOG1991|consen  391 AALDFLTTLVSK--RGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH  466 (1010)
T ss_pred             HHHHHHHHHHHh--cchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            344445554442  123333  3578888888873      123445678888888887622   111122233334444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHh
Q 017402          179 VVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVS  256 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~  256 (372)
                      +.-.++++.--.|..||+++..++..+ ......   ..+++...+.|.+.++-.++..|+-||..+-++.+ +..++..
T Consensus       467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            555556777788999999999998443 222222   35788888888844443899999999998776554 4444544


Q ss_pred             c--CchHHHHHHHhhh-HHHHHHHHHHHhC-CHhHH----HHHHhccchHHHHHHHHhc---CC---hhHHHhHHHHHHH
Q 017402          257 C--GAVPILMRLADAG-LERAVEVLSILVK-CKEGR----EEMMRVSGCVGVFVKMLKT---GS---SRAVQCSLFTLSC  322 (372)
Q Consensus       257 ~--g~v~~L~~ll~~~-~e~a~~~L~~L~~-~~~~~----~~i~~~~g~i~~L~~ll~~---~~---~~~~~~a~~~L~~  322 (372)
                      .  +.++.|+++.+.- .+....++..+.. .++.-    ..++.  ......+++++.   .+   ..-...|.++|..
T Consensus       544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH--HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            3  3455555555443 3333333333322 22211    12222  245566677763   11   2223466666666


Q ss_pred             HhcC--CHHHHHHHH---hcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          323 LCCC--SQEICGDSR---KEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       323 l~~~--~~~~~~~~~---~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      +..-  +-+...++.   +.-+++.+-.++++.-.++.+.+..++..+
T Consensus       622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~  669 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSL  669 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            6542  113333332   233666677777777677777776666544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.97  E-value=2.8  Score=39.84  Aligned_cols=183  Identities=13%  Similarity=0.052  Sum_probs=112.3

Q ss_pred             ChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhc-cccchHHHHHHHh-hcCCc---hHHHHHHHHHHHhhcC-C
Q 017402          175 AVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIG-DYPYAINALVSLL-QNGKL---IREKKEAATALYALTS-F  247 (372)
Q Consensus       175 ~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~-~~~g~i~~Lv~ll-~~~~~---~~~~~~a~~aL~~L~~-~  247 (372)
                      .+..++.+..+ .+...+..++..+..+.    ||..-. .....+..+...+ .....   ........|....|.. .
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~Lv----NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLV----NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            66777777655 35677777777777765    221110 1124555555555 22222   1333334444444433 2


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCC-HhH-------------HHHHHhccchHHHHHHHHhcCChh
Q 017402          248 PENRKRVVSCGAVPILMRLADAG--LERAVEVLSILVKC-KEG-------------REEMMRVSGCVGVFVKMLKTGSSR  311 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~L~~ll~~~~~~  311 (372)
                      +..-.     ..++.|+.+++++  ...+...+..|..+ ++.             ++++..  ..+|.|++..+..+..
T Consensus       266 ~~~~~-----~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~  338 (415)
T PF12460_consen  266 HPLAT-----ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDE  338 (415)
T ss_pred             CchHH-----HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChh
Confidence            21111     2456788888665  56677777777765 322             344444  2688888888776666


Q ss_pred             HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          312 AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       312 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .+.....+|.++..+-|...-.---..++|.+++-+...+.+++..+...|..+-..
T Consensus       339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            888999999999887663322222234899999999999999999999999866543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.95  E-value=0.034  Score=49.97  Aligned_cols=44  Identities=25%  Similarity=0.517  Sum_probs=34.8

Q ss_pred             CccccCCcccCC-Cce---ecCCchHhhHHHHHHHHhc-CCCCCCCCCC
Q 017402            8 DFKCPISLEIMS-DPV---ILSSGHTFDRASIQRWLDS-GHRTCPITKL   51 (372)
Q Consensus         8 ~~~C~ic~~~~~-~Pv---~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~   51 (372)
                      ++.|..|++.+- .|-   -++|.|.|+.+|+..++.. +..+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            578999998753 332   4799999999999999965 3568999983

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.92  E-value=0.12  Score=43.46  Aligned_cols=149  Identities=18%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCCccc--cccccccCChHHHH
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVV  180 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv  180 (372)
                      .-+|+..|+-++. .|+.+..+.++.+--.+..+|...+   ....++..+++++..|..+++-  ...+....++|.++
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3467777777776 6889999999987767777776422   2345789999999998877432  23444688999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhcccc-------chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYP-------YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR  253 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-------g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  253 (372)
                      +++..++.-.+..|+-++..+-.++..-..|.+.-       ..+..++.-+-+..+....+.++++-..||.++..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            99999999999999988888877776555554311       22333333332322237888999988889988887775


Q ss_pred             HH
Q 017402          254 VV  255 (372)
Q Consensus       254 i~  255 (372)
                      +-
T Consensus       276 L~  277 (315)
T COG5209         276 LS  277 (315)
T ss_pred             Hh
Confidence            54

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.86  E-value=0.05  Score=48.51  Aligned_cols=61  Identities=20%  Similarity=0.448  Sum_probs=47.3

Q ss_pred             CCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      .+-+.||+|.+.+..|+. ..-||.-|-.|-.+    ....||.|+.++.   ++ .++.+++.++....
T Consensus        46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g---~~-R~~amEkV~e~~~v  107 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIG---NI-RCRAMEKVAEAVLV  107 (299)
T ss_pred             hhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccc---cH-HHHHHHHHHHhcee
Confidence            356789999999999974 56799999998753    3557999998877   22 67778887777654

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.82  E-value=0.06  Score=42.38  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=24.9

Q ss_pred             CCccccCCcccCCCceecCC------------chHh-hHHHHHHHHh
Q 017402            7 DDFKCPISLEIMSDPVILSS------------GHTF-DRASIQRWLD   40 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~c------------gh~~-c~~ci~~~~~   40 (372)
                      |+.+||||++.-++.|.+-|            +-+| ...|++++..
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            57799999999999998744            2222 3458888764

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.75  E-value=0.044  Score=46.31  Aligned_cols=54  Identities=15%  Similarity=0.310  Sum_probs=40.6

Q ss_pred             CCCccccCCcccCCCcee----cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402            6 PDDFKCPISLEIMSDPVI----LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~----~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n   62 (372)
                      ...|.|||..-.|..-..    .+|||.|....+.+..   ...|++|+..+.....+.-|
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlN  166 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLN  166 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeC
Confidence            456899999999987753    4899999988887655   34799999999843333334

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.74  E-value=4.4  Score=41.00  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             HhcCChHHHHHHH-HHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402          183 LRFGSPDCRAIAA-TIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP  261 (372)
Q Consensus       183 L~~~~~~~~~~a~-~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~  261 (372)
                      +.+++...|..|+ .+|..|+..++    +   .-..+.+++...+.+. ++++-.-.=|.+.+........+    ++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d----m---ssLf~dViK~~~trd~-ElKrL~ylYl~~yak~~P~~~lL----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED----M---SSLFPDVIKNVATRDV-ELKRLLYLYLERYAKLKPELALL----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC----h---HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence            4455555555554 56666665444    1   2355556666553333 66666666666666544422222    334


Q ss_pred             HHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc
Q 017402          262 ILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE  337 (372)
Q Consensus       262 ~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  337 (372)
                      .+.+=+.++    +-.|+..++.|=.     .++..  ..++.+.+.+.++++.+|+.|+.++..+=..+++   ...+.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~  165 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHEL  165 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcc
Confidence            444444333    2233333333221     12222  3677777888788888888888888776654333   34557


Q ss_pred             ChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          338 GVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       338 g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      |.+..+..++.+.++.|..+|...|..+-.
T Consensus       166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         166 GLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            788888888888888888888877776543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=93.69  E-value=0.15  Score=47.67  Aligned_cols=213  Identities=16%  Similarity=0.143  Sum_probs=119.4

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-C---ChHHHHHHHHHHHHhcccccchhhhccccchHHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-G---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINA  220 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~  220 (372)
                      ..+..+..++.++.++...+...-   ..|-=...+.++.. +   +.-++..|.+++.-+-.+...+....-...+...
T Consensus       361 ~~~Tl~~s~Cdals~i~~~~f~~l---pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~  437 (728)
T KOG4535|consen  361 EHPTLQASACDALSSILPEAFSNL---PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA  437 (728)
T ss_pred             cCCCchhHHHHHHhhcCchhhcCC---CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence            345566777777777653321111   11111223333321 2   2335556666666666666566554443467777


Q ss_pred             HHHHhhcCCchHHHHHHHHHHHhhcC-----CCchhHHHHhc-C-chHHHHHHHh-----hh--HHHHHHHHHHHhCCHh
Q 017402          221 LVSLLQNGKLIREKKEAATALYALTS-----FPENRKRVVSC-G-AVPILMRLAD-----AG--LERAVEVLSILVKCKE  286 (372)
Q Consensus       221 Lv~ll~~~~~~~~~~~a~~aL~~L~~-----~~~~~~~i~~~-g-~v~~L~~ll~-----~~--~e~a~~~L~~L~~~~~  286 (372)
                      ++..+.+..- ..++.+++++.|++.     .+.-+..-.+. | .+..++....     ..  ..++..+|.|+...-+
T Consensus       438 il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq  516 (728)
T KOG4535|consen  438 ILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ  516 (728)
T ss_pred             HHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH
Confidence            7777777665 789999999999863     12222222221 1 1222333221     11  5678888888876322


Q ss_pred             HH-----HHHHhccchHHHHH-HHHhcCChhHHHhHHHHHHHHhcCCHHH-HHHH-HhcChhHHHHHHhhc-ccHHHHHH
Q 017402          287 GR-----EEMMRVSGCVGVFV-KMLKTGSSRAVQCSLFTLSCLCCCSQEI-CGDS-RKEGVLDICMGLLED-DNEKVRRN  357 (372)
Q Consensus       287 ~~-----~~i~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~g~~~~l~~ll~~-~~~~v~~~  357 (372)
                      .-     ..+.+  |.+..+. .....+.-+++=+|+.++.|+-++ +.. -+.+ +..-+.+.|..++.+ .|.+||..
T Consensus       517 ~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~  593 (728)
T KOG4535|consen  517 PIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKN-PALPLQTAPWASQAFNALTSLVTSCKNFKVRIR  593 (728)
T ss_pred             HhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcC-ccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence            11     11222  2333222 222335567888999999999987 433 2333 334478888888887 48899999


Q ss_pred             HHHHHHH
Q 017402          358 ANNLIQT  364 (372)
Q Consensus       358 a~~~L~~  364 (372)
                      |+.+|..
T Consensus       594 AA~aL~v  600 (728)
T KOG4535|consen  594 AAAALSV  600 (728)
T ss_pred             hhhhhcC
Confidence            9998853

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=2.2  Score=42.43  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=15.2

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHH
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTK  115 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~  115 (372)
                      |+.|+++...-....|+..+++|+..|..
T Consensus       170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~  198 (948)
T KOG1058|consen  170 PDAPELIESFLLTEQDPSCKRNAFLMLFT  198 (948)
T ss_pred             CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence            34456664333333466666666655543

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.58  E-value=0.13  Score=49.36  Aligned_cols=71  Identities=38%  Similarity=0.608  Sum_probs=62.8

Q ss_pred             CCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      ++|++|.-|+...+|+|||.++ .+-+..|+=|..++-. ..+-|.-|.+++ ..+..||..+++.+..+.+..
T Consensus       850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLt-lddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLT-LDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCc-hhhcCCCHHHHHHHHHHHhcc
Confidence            5899999999999999999987 7889999999887764 567899999999 999999999999998887653

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=5.5  Score=40.97  Aligned_cols=254  Identities=17%  Similarity=0.117  Sum_probs=137.5

Q ss_pred             CChHHHHHHHHHHHHHhhc---ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH
Q 017402          101 SPLESKLESLTQLTKLSKR---DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS  177 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~  177 (372)
                      .++..+..|+..+.+++..   +..++..+ +.=.+.-++..++  +..--++..|+++++.++.-+ .+..-.-..+++
T Consensus       430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale  505 (1010)
T KOG1991|consen  430 KNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSID-FKDPNNLSEALE  505 (1010)
T ss_pred             cChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHH
Confidence            3455667777777777731   22233333 2223444555556  566678999999999987321 111111234566


Q ss_pred             HHHHHHh-cCChHHHHHHHHHHHHhccccc-chhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHH
Q 017402          178 RVVAALR-FGSPDCRAIAATIITSLAVVEV-NKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKR  253 (372)
Q Consensus       178 ~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~  253 (372)
                      .....|. +.+..++..|+-||..+-++.+ ..+.+.. ..+.++.|+++.+..+. +........+.  +... +.-..
T Consensus       506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV--~~fseElsPf  582 (1010)
T KOG1991|consen  506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIV--CKFSEELSPF  582 (1010)
T ss_pred             HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHH--HHHHHhhchh
Confidence            7777777 5678899999999999877664 3354432 24778888888887665 45554444332  2211 11111


Q ss_pred             HHh--cCchHHHHHHHhh----h---HHHHHHHHHHH---hC---CHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhH
Q 017402          254 VVS--CGAVPILMRLADA----G---LERAVEVLSIL---VK---CKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       254 i~~--~g~v~~L~~ll~~----~---~e~a~~~L~~L---~~---~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      ..+  .......++++..    .   .++++.+++-|   ..   .-+....+..  +.-..+.+-.++++.-..+=+.+
T Consensus       583 A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~  662 (1010)
T KOG1991|consen  583 AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEEL  662 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            111  1234455666642    1   33333333322   22   1122222222  12345666666666555666777


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                      ..+...+...+++..-.|++  +.+.+.+..+...-.--....-+|+
T Consensus       663 ~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~  707 (1010)
T KOG1991|consen  663 LEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALH  707 (1010)
T ss_pred             HHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            77777776666666666654  3566666555544333344444444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.41  E-value=0.8  Score=39.16  Aligned_cols=83  Identities=20%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHhcccccchhhhcccc------chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc--hhHHHHhcCc
Q 017402          188 PDCRAIAATIITSLAVVEVNKATIGDYP------YAINALVSLLQNGKLIREKKEAATALYALTSFPE--NRKRVVSCGA  259 (372)
Q Consensus       188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~------g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~  259 (372)
                      ..-+..|..+|..|+..+.|-..|....      ..+..|++++....++-.++.|+..|.+|+..++  .+....+.+.
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3568899999999999999888876622      3555667777776666899999999999999776  3344457799


Q ss_pred             hHHHHHHHhhh
Q 017402          260 VPILMRLADAG  270 (372)
Q Consensus       260 v~~L~~ll~~~  270 (372)
                      |..|+..++..
T Consensus       218 i~~Li~FiE~a  228 (257)
T PF12031_consen  218 ISHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999999664

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=93.30  E-value=5.1  Score=34.88  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=107.8

Q ss_pred             hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      ....++.|+..|...+..+-++..|..+|.++. .+         +.++.+-+..++...++++.+..++..+--.+...
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            345678888888754456778888888888875 22         22344555555566777777667776653221100


Q ss_pred             h-----h-hcc------ccchHHHHHHHhhcCCchHH-HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH--hhh--H
Q 017402          209 A-----T-IGD------YPYAINALVSLLQNGKLIRE-KKEAATALYALTSFPENRKRVVSCGAVPILMRLA--DAG--L  271 (372)
Q Consensus       209 ~-----~-i~~------~~g~i~~Lv~ll~~~~~~~~-~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll--~~~--~  271 (372)
                      .     . +..      ..+-|..|-..|.+...+.. +..|...|+|+-...          +|-.|++-+  ++.  +
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADDSALFR  204 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccchHHHH
Confidence            0     0 000      01123333333333222111 112233333322111          112222222  111  3


Q ss_pred             HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc
Q 017402          272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED  349 (372)
Q Consensus       272 e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~  349 (372)
                      -.+..+++.|-.           .-+++.|.+.|.+  ..+-+|-.|+.+|..++..  +         +++.|.+.+.+
T Consensus       205 hEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D  262 (289)
T KOG0567|consen  205 HEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGD  262 (289)
T ss_pred             HHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCC
Confidence            334444444433           5578888888865  5677888999999988742  2         56777888888


Q ss_pred             ccHHHHHHHHHHHHHHh
Q 017402          350 DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       350 ~~~~v~~~a~~~L~~l~  366 (372)
                      ..+.|++.+.-+|..+.
T Consensus       263 ~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  263 EERVVRESCEVALDMLE  279 (289)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            88999999988887654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.30  E-value=1.6  Score=41.09  Aligned_cols=124  Identities=17%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCc----hhHHHHhcCchHHHHHHHhhh-----------HHHHHHHHHHHhCC
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPE----NRKRVVSCGAVPILMRLADAG-----------LERAVEVLSILVKC  284 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~----~~~~i~~~g~v~~L~~ll~~~-----------~e~a~~~L~~L~~~  284 (372)
                      .+..++...++ .-+-.|+.....++.+++    +++.+.++=+.+.+=+++.+.           ...++.+|+.+|+.
T Consensus        15 ~~~~L~~~k~D-~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   15 DCLKLLKGKRD-EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hHHHHhcccCh-HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            35566666666 666677777778888765    677788988888888888332           45688999999998


Q ss_pred             HhHH--HHHHhccchHHHHHHHHhc-CChh------HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402          285 KEGR--EEMMRVSGCVGVFVKMLKT-GSSR------AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE  348 (372)
Q Consensus       285 ~~~~--~~i~~~~g~i~~L~~ll~~-~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~  348 (372)
                      ++-.  .+++.   .||.|.+.+.. .++.      ..+.+...|..++.. +.....++..|+++.+-+.-.
T Consensus        94 pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   94 PELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence            7643  45666   59999999965 3333      567888999999988 778888999999998886554

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.20  E-value=2.1  Score=38.62  Aligned_cols=164  Identities=12%  Similarity=0.102  Sum_probs=102.1

Q ss_pred             CHHHHH-HHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh
Q 017402          132 AVSAVL-NCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT  210 (372)
Q Consensus       132 ~i~~L~-~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~  210 (372)
                      .+..|+ ..++  +.++.+++.|+.+|+-.+.-+...    ....++.+...++.++.+++..|+.++..+.........
T Consensus        27 ll~~lI~P~v~--~~~~~vR~~al~cLGl~~Lld~~~----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   27 LLDSLILPAVQ--SSDPAVRELALKCLGLCCLLDKEL----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            344433 4556  678899999999999977654421    133467788888788999999999999988765421111


Q ss_pred             ---------hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH-hhh-------HHH
Q 017402          211 ---------IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA-DAG-------LER  273 (372)
Q Consensus       211 ---------i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~-------~e~  273 (372)
                               ... ...+..+.+.+.+.++ +++..|+..++.|-.......   ...++..|+-+- +..       +..
T Consensus       101 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~-~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  101 DSESDNDESVDS-KSLLKILTKFLDSENP-ELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             cchhccCccchH-hHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence                     111 3578888888888866 899999999998776554322   122333333332 111       112


Q ss_pred             HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402          274 AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT  307 (372)
Q Consensus       274 a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~  307 (372)
                      .-..+-..+......+..+. ...++.+..+...
T Consensus       176 L~~Ffp~y~~s~~~~Q~~l~-~~f~~~l~~~~~~  208 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQERLA-EAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHhC
Confidence            22333444554444444444 4577777776654

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.14  E-value=0.11  Score=40.96  Aligned_cols=53  Identities=17%  Similarity=0.310  Sum_probs=38.7

Q ss_pred             CCCCCCCCccccCCcccCCCceecCCch-----HhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            1 MATQFPDDFKCPISLEIMSDPVILSSGH-----TFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh-----~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      |......+..|=||.+--. +..-||..     ..++.|+++|...+ ...||.|+.++.
T Consensus         1 ~~~~s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          1 MEDVSLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCcCCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            3445566788999998743 34456543     34899999999764 568999998876

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.15  Score=46.42  Aligned_cols=45  Identities=24%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCccccCCcccCCC---ceecCCchHhhHHHHHHHHhc----C---CCCCCCCCC
Q 017402            7 DDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDS----G---HRTCPITKL   51 (372)
Q Consensus         7 ~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~----~---~~~CP~c~~   51 (372)
                      ..|.|.||.+-..-   =+.++|+|.||+.|...++..    +   ...||.++-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            45789999986432   345799999999999999852    2   236887553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.02  E-value=6.6  Score=35.39  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--cccc-------cccc
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNK-------VGLV  171 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~-------~~i~  171 (372)
                      .++.+|..|++.|+-.+--+.+....     .++.+...+.  .++.+++..|+.+|..+...  .+.-       ....
T Consensus        39 ~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   39 SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            37899999999999999766533222     3677778886  56899999999999885432  1111       1122


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc--hHHHHHHHH-HHHhhcCCC
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL--IREKKEAAT-ALYALTSFP  248 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~-aL~~L~~~~  248 (372)
                      ....++.+.+.+.+.+++++..|+..+..|-..+....    ...++..|+-+.-++..  ..-....+. .+-..+...
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~  187 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS  187 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence            35678888888888899999999999999876553333    14677777766655432  123334444 444556655


Q ss_pred             chhHHHHhcCchHHHHHHH
Q 017402          249 ENRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll  267 (372)
                      ...+..+..+.++.+-.+.
T Consensus       188 ~~~Q~~l~~~f~~~l~~~~  206 (298)
T PF12719_consen  188 PENQERLAEAFLPTLRTLS  206 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5445555666777766666

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=93.02  E-value=0.12  Score=44.11  Aligned_cols=44  Identities=34%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             CccccCCcccCCCcee-cCCchHhhHHHHHHHHhcC-CCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSG-HRTCPITKL   51 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~-~~~CP~c~~   51 (372)
                      +++||+......+|+. ..|||.|.|.-|....... ...||+-+.
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC  221 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC  221 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence            5789999999999986 5699999999999887542 347999433

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.92  E-value=7.1  Score=38.83  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=77.1

Q ss_pred             CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh
Q 017402          132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI  211 (372)
Q Consensus       132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i  211 (372)
                      .+..+++...  +.+..++...+.+|..+.....-...-+-.+....+..-+.+.-+.+|..|..+|..+=..+ +-+. 
T Consensus        86 ~f~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee-  161 (892)
T KOG2025|consen   86 TFYHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEE-  161 (892)
T ss_pred             HHHHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCc-
Confidence            3444444444  67888999999999888753222222233556666666677778999999999998885322 1111 


Q ss_pred             ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402          212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS  256 (372)
Q Consensus       212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~  256 (372)
                         ..++..+..+++.+.+++++..|   |.|++-++.....+++
T Consensus       162 ---~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive  200 (892)
T KOG2025|consen  162 ---CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE  200 (892)
T ss_pred             ---ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence               35677888888887666888765   4577777777777764

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=92.90  E-value=0.12  Score=35.29  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             CccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .-.|.||.+-.-     +|.+.  .|+-..||.|++--...+...||.|+..+.
T Consensus         9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk   62 (80)
T PF14569_consen    9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK   62 (80)
T ss_dssp             S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred             CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence            357999997532     44443  488889999998878888899999997766

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.84  E-value=11  Score=38.09  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      .++..+|..+|.+.  ....+.+|++.|..+-..+...      ...-|.+|+-..  +.+.+++.-.---|...+....
T Consensus        34 ~~~~~dL~~lLdSn--kd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqp  103 (968)
T KOG1060|consen   34 NIRHDDLKQLLDSN--KDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQP  103 (968)
T ss_pred             CCChHHHHHHHhcc--ccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCC
Confidence            34456799999886  5566778998877666544422      234677888888  7899998887777777776655


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +-..+    -|..+=+-|+++++.+|..|.++|..+      |..+.. .=.+-++-+...+..+ -+++.|+.||-.|-
T Consensus       104 dLALL----SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~-yVRk~AA~AIpKLY  171 (968)
T KOG1060|consen  104 DLALL----SINTFQKALKDPNQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSP-YVRKTAAHAIPKLY  171 (968)
T ss_pred             Cceee----eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcH-HHHHHHHHhhHHHh
Confidence            43322    256677788889999998888777665      222222 1122233344445555 89999999999987


Q ss_pred             C-CCchhHHHHh
Q 017402          246 S-FPENRKRVVS  256 (372)
Q Consensus       246 ~-~~~~~~~i~~  256 (372)
                      + .++-+.++++
T Consensus       172 sLd~e~k~qL~e  183 (968)
T KOG1060|consen  172 SLDPEQKDQLEE  183 (968)
T ss_pred             cCChhhHHHHHH
Confidence            6 4455554433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.83  E-value=1.2  Score=46.45  Aligned_cols=108  Identities=26%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc----c
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE----V  206 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~----~  206 (372)
                      ++.+...++. -...+.+..|+..|..|+..  ++.+.    ..++|-++.++.++..++|..|..+|..+-..-    .
T Consensus       424 vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            4555566653 25677899999999999876  33332    567899999999999999999998888764321    1


Q ss_pred             chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          207 NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       207 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .-..|-. .-++|.|-.++.+.....++..-+..|..||.
T Consensus       499 ~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~  537 (1431)
T KOG1240|consen  499 SDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK  537 (1431)
T ss_pred             ccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence            2222322 35788888888874433566666666666654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=92.75  E-value=3.3  Score=40.42  Aligned_cols=119  Identities=24%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHH
Q 017402          185 FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPIL  263 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L  263 (372)
                      .++...+..|+..|...-..-+.   +.  ..+|..++.|..+.+. .++..|.+.|..+|.+ ++...++     ++.|
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~---l~--~~Ai~a~~DLcEDed~-~iR~~aik~lp~~ck~~~~~v~kv-----aDvL  101 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPD---LQ--EEAINAQLDLCEDEDV-QIRKQAIKGLPQLCKDNPEHVSKV-----ADVL  101 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GG---GH--HHHHHHHHHHHT-SSH-HHHHHHHHHGGGG--T--T-HHHH-----HHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChh---hH--HHHHHHHHHHHhcccH-HHHHHHHHhHHHHHHhHHHHHhHH-----HHHH
Confidence            36888999999999887543322   22  2689999999998888 9999999999999985 4566655     4588


Q ss_pred             HHHHhhh--HH--HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh---cCChhHHHhHHHHHHH
Q 017402          264 MRLADAG--LE--RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK---TGSSRAVQCSLFTLSC  322 (372)
Q Consensus       264 ~~ll~~~--~e--~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~  322 (372)
                      +++|.+.  .|  .+-.+|..|-..+        ..+.+..|...+.   .+++.+++.++..|..
T Consensus       102 ~QlL~tdd~~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  102 VQLLQTDDPVELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHTT---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            8888544  22  2223333332211        1233344444443   4566777777766643

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.45  E-value=4.3  Score=40.29  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=77.8

Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402          173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK  252 (372)
Q Consensus       173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  252 (372)
                      .|.+..+++...+.+..+|...+.+|..++........-+. .+.+..+..-+.+..+ .++.+|+.+|+.+-.++..- 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep-~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREP-NVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCc-hHHHHHHHHHHHHhcCCCCC-
Confidence            45566666666778999999999999998753333333333 3778888888888777 99999999999987533210 


Q ss_pred             HHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHh
Q 017402          253 RVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMMR  293 (372)
Q Consensus       253 ~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~  293 (372)
                         +..++..+..+++.+  .|.=-.+|.|++..+.....|++
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~Ive  200 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVE  200 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHH
Confidence               123556677777443  55555567888876655555554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=92.27  E-value=11  Score=38.65  Aligned_cols=219  Identities=11%  Similarity=0.070  Sum_probs=135.9

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA  181 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~  181 (372)
                      .|....+++..+..++.....+...+..  ++...+..+.. +..+.++..|++++...+.......  ...++++.|..
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~-~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~q  537 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTM-DVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQ  537 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhcc-CCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHH
Confidence            4555557777777666644433322211  33344444442 3556788888888888762211111  13678888888


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      +....+.++.-....+|......+.......+ .-+.|..+.+.... +++.+...+-.++..|+....+..-+.+ -.+
T Consensus       538 las~~s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~i  615 (1005)
T KOG2274|consen  538 LASKSSDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLI  615 (1005)
T ss_pred             HcccccHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHH
Confidence            88777888888888899988887765555555 46777777776543 3357777777777777764444433333 378


Q ss_pred             HHHHHHHhhh--------HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCH
Q 017402          261 PILMRLADAG--------LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQ  328 (372)
Q Consensus       261 ~~L~~ll~~~--------~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~  328 (372)
                      |.++..++..        ..-++.+|..+.+... .-..... .-++|++.+..- +++...-++|-.+|..+-..+.
T Consensus       616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            9999998433        4456777776666422 2222222 236788777764 4566777888888887765544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.91  E-value=17  Score=38.52  Aligned_cols=248  Identities=18%  Similarity=0.148  Sum_probs=125.7

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC----ccccccccccCChH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD----DDNKVGLVAEGAVS  177 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~  177 (372)
                      ..+.|.+|+.-|+.++.... --..+  -.++|.++.++.  +....+|..|+.+|..+...    +..-..|.-+=.+|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~-de~~L--DRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP  510 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYID-DEVKL--DRVLPYFVHLLM--DSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP  510 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcc-hHHHH--hhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence            45789999999999986422 11111  247899999999  78899999999998774322    22222344445677


Q ss_pred             HHHHHHhcC-ChHHHHHHHHHHHHhcccc------------------cch-hhhcc--------ccchHHHHH-HHhhcC
Q 017402          178 RVVAALRFG-SPDCRAIAATIITSLAVVE------------------VNK-ATIGD--------YPYAINALV-SLLQNG  228 (372)
Q Consensus       178 ~lv~~L~~~-~~~~~~~a~~~L~~ls~~~------------------~~~-~~i~~--------~~g~i~~Lv-~ll~~~  228 (372)
                      .|-.++.+. ...+|..-+.-|..||...                  .+- .....        ....|+.++ .++.+.
T Consensus       511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~  590 (1431)
T KOG1240|consen  511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS  590 (1431)
T ss_pred             hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence            777777663 3334443334444433221                  000 00000        000111111 122222


Q ss_pred             CchHHHHHHHHHHHhhcCCCchhHHHHhcC----chHHHHHHHhhhHHH-HHHHHHHHhCCHh--HHHHHHhccchHHHH
Q 017402          229 KLIREKKEAATALYALTSFPENRKRVVSCG----AVPILMRLADAGLER-AVEVLSILVKCKE--GREEMMRVSGCVGVF  301 (372)
Q Consensus       229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g----~v~~L~~ll~~~~e~-a~~~L~~L~~~~~--~~~~i~~~~g~i~~L  301 (372)
                      .+ -++..-+..|.-||.      -+.+.+    +++.|+-.|++.... =.+....+.....  |.+. ++ ++.+|.|
T Consensus       591 ~~-~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs-~s-eyllPLl  661 (1431)
T KOG1240|consen  591 PP-IVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS-VS-EYLLPLL  661 (1431)
T ss_pred             ch-HHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee-HH-HHHHHHH
Confidence            11 233333333333331      111111    223333333222000 0011111111000  0000 12 4567888


Q ss_pred             HHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          302 VKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       302 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ..-+.++.+.+-..|+++|..|+.. .-.++..+- .+++-..-++-..|.=+|+.+..++-..
T Consensus       662 ~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~  723 (1431)
T KOG1240|consen  662 QQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAI  723 (1431)
T ss_pred             HHhccCcchhhHHHHHHHHHHHHHh-cccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence            8888888899999999999999976 322222221 1344455566778888999998887543

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.90  E-value=0.13  Score=31.28  Aligned_cols=39  Identities=15%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             ccCCcccCCCceecC---CchHhhHHHHHHHHhcCCC-CCCCC
Q 017402           11 CPISLEIMSDPVILS---SGHTFDRASIQRWLDSGHR-TCPIT   49 (372)
Q Consensus        11 C~ic~~~~~~Pv~~~---cgh~~c~~ci~~~~~~~~~-~CP~c   49 (372)
                      |.+|.++...-+.-+   |+-.+...|+..+|+.... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            667888776666543   8877888999999976443 69987

; PDB: 3NW0_A 2CT0_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=91.88  E-value=10  Score=36.03  Aligned_cols=204  Identities=17%  Similarity=0.131  Sum_probs=108.6

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhh
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKAT  210 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~  210 (372)
                      +..++.+..+ ..++..+..++..+..+.-. ++..   .-...+..+...+ ...+...+..+..++..++..=--|..
T Consensus       191 l~~l~~~~~~-~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  191 LQSLLNLALS-SEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            3344444432 23455666666666655422 0000   0012233333333 223444444455555444422111111


Q ss_pred             hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-Cc--------hhHHHHhcCc----hHHHHHHHhhh----HHH
Q 017402          211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PE--------NRKRVVSCGA----VPILMRLADAG----LER  273 (372)
Q Consensus       211 i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~--------~~~~i~~~g~----v~~L~~ll~~~----~e~  273 (372)
                      -.. ...+..|+.++.+.   ++...|+.++.-|..+ ++        +.+.+.++-.    +|.|++-..+.    +..
T Consensus       267 ~~~-~~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~  342 (415)
T PF12460_consen  267 PLA-TELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN  342 (415)
T ss_pred             chH-HHHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence            111 24677888888773   6677788887777665 22        3333444443    44444444322    456


Q ss_pred             HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHH
Q 017402          274 AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMG  345 (372)
Q Consensus       274 a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~  345 (372)
                      .+.+|.++..+-...-..-+-+..+|.|++-|...+..++..++.+|..+....++....=++ .+++.|+.
T Consensus       343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            778888888754433333333457889999998888889999999999988776544333222 25555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=91.64  E-value=4.6  Score=41.10  Aligned_cols=212  Identities=13%  Similarity=0.115  Sum_probs=131.5

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHH----HHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSR----VVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN  219 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~----lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~  219 (372)
                      ..+...-.+..++...+...     .+..+.+..    .+..+. +..+.++..|++++...+..   +....-.++++.
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~-----~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild  533 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSST-----VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILD  533 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHH
Confidence            44555556666666443321     112222222    233332 34566778888888877622   111122257888


Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh----hh--HHHHHHHHHHHhCCHhHHHHHHh
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD----AG--LERAVEVLSILVKCKEGREEMMR  293 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~----~~--~e~a~~~L~~L~~~~~~~~~i~~  293 (372)
                      .|..+....++ ++......+|+..++.+.-.....++-+.|..+.+.-    .+  ...+-.++..|+....+...+.+
T Consensus       534 ~L~qlas~~s~-evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e  612 (1005)
T KOG2274|consen  534 GLLQLASKSSD-EVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE  612 (1005)
T ss_pred             HHHHHcccccH-HHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence            88888877777 8999999999999987766666677777777777662    22  44455566666665555555554


Q ss_pred             ccchHHHHHHHHhcCC----hhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHH-hhcccHHHHHHHHHHHHHHhc
Q 017402          294 VSGCVGVFVKMLKTGS----SRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGL-LEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       294 ~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~  367 (372)
                        ..+|.|++.|....    ....--|+.+|..+.++.+ ..-+.+..- +.|.+.+. +++++...-..+..+|+.+-.
T Consensus       613 --~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  613 --RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             --HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence              37999999997654    4555677777776766544 333344333 45555553 556777788888888887654


Q ss_pred             C
Q 017402          368 N  368 (372)
Q Consensus       368 ~  368 (372)
                      .
T Consensus       690 ~  690 (1005)
T KOG2274|consen  690 V  690 (1005)
T ss_pred             c
Confidence            4

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.49  E-value=0.12  Score=45.22  Aligned_cols=48  Identities=27%  Similarity=0.575  Sum_probs=36.7

Q ss_pred             CCCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcC--CCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSG--HRTCPITKLP   52 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~   52 (372)
                      ...-|.||+-.+.-.   .|+.+.|||..-+..+.+.-..|  .+.||.|-..
T Consensus       333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~  385 (396)
T COG5109         333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM  385 (396)
T ss_pred             ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence            345689999887643   57899999999998887766655  3689999543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=91.42  E-value=10  Score=39.58  Aligned_cols=189  Identities=15%  Similarity=0.117  Sum_probs=113.5

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR  253 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  253 (372)
                      ++++.|...|++.|..++=.|+.-+..++.-.+  ..+..  .+|...++++...++...-.-|+.+|+.|+...=-...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            566777777778889999999999999875544  22222  57777777666555436667888899888864432222


Q ss_pred             HHhcCchHHHHHHH---------hhh---HHHHHHHHHHHhCCHhHH--HHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          254 VVSCGAVPILMRLA---------DAG---LERAVEVLSILVKCKEGR--EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       254 i~~~g~v~~L~~ll---------~~~---~e~a~~~L~~L~~~~~~~--~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      ..+ .++|.+++-+         ..|   ++.|+.+.+.+++..+..  +.+.. .=.-..|...+.+..-.+|+.|..+
T Consensus       417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHH
Confidence            222 2566666665         112   788999999998854333  22222 1112233334445555667777777


Q ss_pred             HHHHhcC-C-------------------H-----HHHHHHHh-cChhHHHHHHh-----hcccHHHHHHHHHHHHHHhcC
Q 017402          320 LSCLCCC-S-------------------Q-----EICGDSRK-EGVLDICMGLL-----EDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       320 L~~l~~~-~-------------------~-----~~~~~~~~-~g~~~~l~~ll-----~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +...... +                   .     +.+.-+.+ .|....+++-+     .+-+..+|+.|+++|+.|+..
T Consensus       495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            7665322 0                   0     11111222 34444444432     345889999999999987643

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.17  E-value=7.4  Score=38.69  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc----ccccccc---CCh
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN----KVGLVAE---GAV  176 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~----~~~i~~~---g~i  176 (372)
                      ..+....+..|+...   ...+.+  ....-.|+++|+  .-+.+-.+....-+.. .. ...    ...+...   ..+
T Consensus       287 ~~~~~~~l~~L~~~~---~~~~~~~~~~~f~~lv~~lR--~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~  359 (574)
T smart00638      287 EVQIVEVLKHLVQDI---ASDVQEPAAAKFLRLVRLLR--TLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPAL  359 (574)
T ss_pred             hhhHHHHHHHHHHHH---HHHhccchHHHHHHHHHHHH--hCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHH
Confidence            334555566666432   222221  234555677777  4555555555554443 21 122    2233333   467


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhc-ccccchhhhccccchHHHHHHHhhcCC---chHHHHHHHHHHHhh----cCCC
Q 017402          177 SRVVAALRFGSPDCRAIAATIITSLA-VVEVNKATIGDYPYAINALVSLLQNGK---LIREKKEAATALYAL----TSFP  248 (372)
Q Consensus       177 ~~lv~~L~~~~~~~~~~a~~~L~~ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L----~~~~  248 (372)
                      ..+.+.+.++.....+ ++.++..+. .....     . ...+..+..++.++.   ...++..|..++++|    |.+.
T Consensus       360 ~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~P-----t-~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~  432 (574)
T smart00638      360 KFIKQWIKNKKITPLE-AAQLLAVLPHTARYP-----T-EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT  432 (574)
T ss_pred             HHHHHHHHcCCCCHHH-HHHHHHHHHHhhhcC-----C-HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence            7777777776433222 222222221 11111     1 346777777777542   234555556655554    3333


Q ss_pred             chhHHHHhcCchHHHHHHHhhh-----H---HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh---cCChhHHHhHH
Q 017402          249 ENRKRVVSCGAVPILMRLADAG-----L---ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK---TGSSRAVQCSL  317 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~-----~---e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~---~~~~~~~~~a~  317 (372)
                      +.+...+....++.+...|...     .   -..+.+|+|+-.           ...+..|..++.   ..+..+|..|+
T Consensus       433 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av  501 (574)
T smart00638      433 PSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAI  501 (574)
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            3322222334666677666432     1   225677777655           345555555554   23567888999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHH
Q 017402          318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQT  364 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~  364 (372)
                      .+|..++...++.        +-+.++.+..+  .+.++|-+|..+|-.
T Consensus       502 ~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      502 LALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME  542 (574)
T ss_pred             HHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            9999887543432        33445555544  466777777666543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=5.4  Score=39.87  Aligned_cols=208  Identities=19%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc------------------c
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD------------------D  165 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~------------------~  165 (372)
                      ..+.-.++.+++.+..++.-+     ...|..+..+|.  +.++.++..|+.+|..|+.++                  +
T Consensus       221 ~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~--stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd  293 (948)
T KOG1058|consen  221 SLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLS--STSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD  293 (948)
T ss_pred             HHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHh--cCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence            344445555666665444322     335677888888  556667777777776666443                  2


Q ss_pred             ccc-ccc-------c-------cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc
Q 017402          166 NKV-GLV-------A-------EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL  230 (372)
Q Consensus       166 ~~~-~i~-------~-------~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~  230 (372)
                      |.. .|+       +       .|.+--++++|+++|.+++..+......|+.+. |-..++..  .-..+.+.-....+
T Consensus       294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvediv~~--Lkke~~kT~~~e~d  370 (948)
T KOG1058|consen  294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDIVQF--LKKEVMKTHNEESD  370 (948)
T ss_pred             cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHHHHH--HHHHHHhccccccc
Confidence            221 111       0       123333445556667777777776666665433 22222110  01111111111111


Q ss_pred             --hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHH
Q 017402          231 --IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVK----CKEGREEMMRVSGCVGVFV  302 (372)
Q Consensus       231 --~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~  302 (372)
                        .+-+..-..+|...+.. ++.     .+.+|+.|++.+.+. .+.|..+|.-+..    .+.-|..      .+..|+
T Consensus       371 ~~~~yRqlLiktih~cav~Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~------ii~~l~  439 (948)
T KOG1058|consen  371 DNGKYRQLLIKTIHACAVKFPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS------IIEKLL  439 (948)
T ss_pred             cchHHHHHHHHHHHHHhhcChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH------HHHHHH
Confidence              23345555566555542 322     234678888888555 4444444444433    2233333      344444


Q ss_pred             HHHhc-CChhHHHhHHHHHHHHhcCCHHHHH
Q 017402          303 KMLKT-GSSRAVQCSLFTLSCLCCCSQEICG  332 (372)
Q Consensus       303 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~  332 (372)
                      .-+.. .+.++-+.|++++..-|....+.+.
T Consensus       440 ~~~~~irS~ki~rgalwi~GeYce~~~~i~~  470 (948)
T KOG1058|consen  440 ETFPQIRSSKICRGALWILGEYCEGLSEIQS  470 (948)
T ss_pred             HhhhhhcccccchhHHHHHHHHHhhhHHHHH
Confidence            44432 5677788999999998876554443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=91.09  E-value=0.06  Score=40.37  Aligned_cols=32  Identities=19%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             CCCCccccCCcccCCCce--ecCCchHhhHHHHH
Q 017402            5 FPDDFKCPISLEIMSDPV--ILSSGHTFDRASIQ   36 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv--~~~cgh~~c~~ci~   36 (372)
                      +.++-.|++|.+.+.+++  +.||||.|+..|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            456678999999888775  46899999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=4.2  Score=41.20  Aligned_cols=179  Identities=15%  Similarity=0.157  Sum_probs=105.0

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV  255 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~  255 (372)
                      .+..+..+.++-..+|.++...|..+....+.+..+.. .+++...++.+++.++ -+--+|...+..||.-       .
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcev-------y  799 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEV-------Y  799 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHh-------c
Confidence            33344444556678899999999999877766666666 6999999999999887 7777777766666642       2


Q ss_pred             hcCchHHHHH-HHhhh----HH---HHHHHHHHHhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402          256 SCGAVPILMR-LADAG----LE---RAVEVLSILVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       256 ~~g~v~~L~~-ll~~~----~e---~a~~~L~~L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  325 (372)
                      ....+|-|.+ ..+..    .+   ..=.++.++..   .+-.++.  .+-.+...++.+++.+...|-.++.+|+++|.
T Consensus       800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~q---a~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq  876 (982)
T KOG4653|consen  800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQ---ALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ  876 (982)
T ss_pred             chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence            2234444444 22111    01   11122222221   0001111  01123344444444555567888999999987


Q ss_pred             CCH-HHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHhcC
Q 017402          326 CSQ-EICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       326 ~~~-~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~  368 (372)
                      ... .....+  ..++..++.+.+ +++.-+|++|..++..+-.+
T Consensus       877 ~~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  877 LLAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            533 112222  225666666666 46889999999999766543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.94  E-value=1.7  Score=42.92  Aligned_cols=151  Identities=20%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             ccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCc---hhH---HHH-hc-----Cc----hHHHHHHHhhh----HH
Q 017402          214 YPYAINALVSLLQNG-KLIREKKEAATALYALTSFPE---NRK---RVV-SC-----GA----VPILMRLADAG----LE  272 (372)
Q Consensus       214 ~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~---~~~---~i~-~~-----g~----v~~L~~ll~~~----~e  272 (372)
                      ..|.+..|++.+.+. +.+...+.-...|++++.+..   +-.   .++ +.     |.    ...++.+|++.    +-
T Consensus       238 ls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc  317 (1128)
T COG5098         238 LSGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRC  317 (1128)
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHH
Confidence            346666667666654 223555566677777776432   211   111 11     11    23456667655    33


Q ss_pred             HHHHHHHHHhCCHhHHHHHHhc-----cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH---HHHHHHHhcChhHHHH
Q 017402          273 RAVEVLSILVKCKEGREEMMRV-----SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ---EICGDSRKEGVLDICM  344 (372)
Q Consensus       273 ~a~~~L~~L~~~~~~~~~i~~~-----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~~~~l~  344 (372)
                      ..+.+.+|+..+-....+++++     ...+..|++-+.+.+|..+..|+..+..++..+-   .-+.+     ++....
T Consensus       318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~  392 (1128)
T COG5098         318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVG  392 (1128)
T ss_pred             HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHH
Confidence            4456666666533222233331     2356667777777899999999999999986532   33333     556667


Q ss_pred             HHhhcccHHHHHHHHHHHH-HHhcCC
Q 017402          345 GLLEDDNEKVRRNANNLIQ-TLSGNP  369 (372)
Q Consensus       345 ~ll~~~~~~v~~~a~~~L~-~l~~~~  369 (372)
                      +-+++-+..||++|.++++ .|..|+
T Consensus       393 r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         393 RRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            7788889999999999996 444443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=90.60  E-value=12  Score=34.81  Aligned_cols=228  Identities=20%  Similarity=0.156  Sum_probs=120.9

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhh
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATI  211 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i  211 (372)
                      |..+++=|. ++....++..++--|..-+.++..+..+..+|.++.+++.+.. ++..+-..++.++..+...+..-..+
T Consensus        23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            556666666 2456678888888888888899999999999999999999955 33335555544444444333333333


Q ss_pred             ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-------------hHHHHHHHH
Q 017402          212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA-------------GLERAVEVL  278 (372)
Q Consensus       212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-------------~~e~a~~~L  278 (372)
                      ....+....++.++.............      .....+..++.+ +.+..+-+.+..             ++-.++.+|
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l  174 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL  174 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence            222567777788877111000000000      000111111111 111212222200             022344445


Q ss_pred             HHHhC---------------CHhHHHHHHhccchHHHHHHHHhc----C-------Ch-----hHHHhHHHHHHHHhcCC
Q 017402          279 SILVK---------------CKEGREEMMRVSGCVGVFVKMLKT----G-------SS-----RAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       279 ~~L~~---------------~~~~~~~i~~~~g~i~~L~~ll~~----~-------~~-----~~~~~a~~~L~~l~~~~  327 (372)
                      ..++.               .+.-++++.+ .|++..++.++..    .       .+     ..-..++++|-+.+..+
T Consensus       175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~-lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  175 ESLVRSLREAGDLSETSSRAGEWFKEELRE-LGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHhhcccchhhhhhccccchhhhhh-HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            55531               1122445555 6889999888862    1       11     12357888888888777


Q ss_pred             HHHHHHHHhc--Ch-hHHHHHHhhcccHHHH---HHHHHHHHHHhcCC
Q 017402          328 QEICGDSRKE--GV-LDICMGLLEDDNEKVR---RNANNLIQTLSGNP  369 (372)
Q Consensus       328 ~~~~~~~~~~--g~-~~~l~~ll~~~~~~v~---~~a~~~L~~l~~~~  369 (372)
                      .++....+..  +. ...+..++....+.+.   ..+.+++-+++.+.
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n  301 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN  301 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence            7776666553  23 3333334444444443   45555555666554

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PHA03096 p28-like protein; Provisional

Probab=90.51  E-value=0.18  Score=44.61  Aligned_cols=43  Identities=28%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             ccccCCcccC-CCce------ec-CCchHhhHHHHHHHHhcC--CCCCCCCCC
Q 017402            9 FKCPISLEIM-SDPV------IL-SSGHTFDRASIQRWLDSG--HRTCPITKL   51 (372)
Q Consensus         9 ~~C~ic~~~~-~~Pv------~~-~cgh~~c~~ci~~~~~~~--~~~CP~c~~   51 (372)
                      -.|.||++.. ..|.      ++ .|.|.||..|+..|....  ..+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            4699999853 2322      23 599999999999999753  345666654

>PHA02862 5L protein; Provisional

Probab=90.45  E-value=0.24  Score=38.32  Aligned_cols=45  Identities=16%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             ccccCCcccCCCceecCCch-----HhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDPVILSSGH-----TFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~~cgh-----~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      -.|=||.+--.+. .-||..     ..++.|+.+|+... +..||.|+.++.
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            3688999876554 355543     36899999999753 458999998877

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.17  E-value=11  Score=37.30  Aligned_cols=164  Identities=14%  Similarity=0.081  Sum_probs=94.7

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccccc--CChHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE--GAVSRV  179 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~l  179 (372)
                      ..+.+.-|+..|+-+..+...+-..+-..-+-..+..++.....++.-+..++++|.|+..++.+++.+...  -.+..+
T Consensus       557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~  636 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV  636 (745)
T ss_pred             CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence            345567777888877775554433333222223333333321256788999999999998888777766653  222222


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCC----chHHHHHHHHHHHhhcCCCchhHHH
Q 017402          180 VAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGK----LIREKKEAATALYALTSFPENRKRV  254 (372)
Q Consensus       180 v~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~aL~~L~~~~~~~~~i  254 (372)
                      +..=..++..++...+....|++..- ....+    .|..+.|..++....    +-+..-..+.||.+|+..+.+..++
T Consensus       637 ~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~  712 (745)
T KOG0301|consen  637 IEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL  712 (745)
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH
Confidence            22222245666666555555555322 11111    245555555554322    2134445677888999988888888


Q ss_pred             HhcCchHHHHHHHhh
Q 017402          255 VSCGAVPILMRLADA  269 (372)
Q Consensus       255 ~~~g~v~~L~~ll~~  269 (372)
                      .+.=.++.+++-+.+
T Consensus       713 A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  713 AKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHhcCHHHHHHHHHH
Confidence            777677777777743

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.07  E-value=2.9  Score=42.36  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             HHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH--HHHHHHhcCCh-
Q 017402          112 QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS--RVVAALRFGSP-  188 (372)
Q Consensus       112 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~--~lv~~L~~~~~-  188 (372)
                      .|.+...+++++.+.+.+.||+..+.+.++.. ...+.+..+++.+.|++...+.+.....-..+.  .+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            78899999999999999999999999999975 778899999999999987765544333221122  23334444444 


Q ss_pred             HHHHHHHHHHHHhcccc
Q 017402          189 DCRAIAATIITSLAVVE  205 (372)
Q Consensus       189 ~~~~~a~~~L~~ls~~~  205 (372)
                      +.--.++++|..+..+.
T Consensus       573 ersY~~~siLa~ll~~~  589 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDS  589 (699)
T ss_pred             hHHHHHHHHHHHHHhCC
Confidence            55566777777776553

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.97  E-value=0.27  Score=43.63  Aligned_cols=49  Identities=16%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-GHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~~~~   54 (372)
                      +++-.|.||-+-..=-..+||+|..|..|-.+.... ....||.|+..-.
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            466789999987766667899999999998775542 3567999997543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=89.84  E-value=13  Score=32.50  Aligned_cols=191  Identities=21%  Similarity=0.206  Sum_probs=119.3

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---  165 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---  165 (372)
                      .|-++..|.+.+..+.+|.+|..+|..+..  +         +.++.+-+..+  +...++++.+..++..+-..+.   
T Consensus        69 v~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~--dp~~~v~ETc~lAi~rle~~~~~~~  135 (289)
T KOG0567|consen   69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIK--DPCKEVRETCELAIKRLEWKDIIDK  135 (289)
T ss_pred             hHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhc--CCccccchHHHHHHHHHHHhhcccc
Confidence            366888888887788999999999988762  2         23455555554  4555666655555554422110   


Q ss_pred             --ccccc--------cccCChHHHHHHHhcCC-hHH-HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHH
Q 017402          166 --NKVGL--------VAEGAVSRVVAALRFGS-PDC-RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE  233 (372)
Q Consensus       166 --~~~~i--------~~~g~i~~lv~~L~~~~-~~~-~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~  233 (372)
                        +....        ...+-+..+-..|.+.+ +.. +..|.-.|.|+          +. ..+|..|++-+..++. -.
T Consensus       136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~-EeaI~al~~~l~~~Sa-lf  203 (289)
T KOG0567|consen  136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GT-EEAINALIDGLADDSA-LF  203 (289)
T ss_pred             ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------Cc-HHHHHHHHHhcccchH-HH
Confidence              01011        12233555555554432 222 22333333332          22 3578888888877754 78


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402          234 KKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT  307 (372)
Q Consensus       234 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~  307 (372)
                      +..++.++..|-+.          -+|+.|.+.|...      +-.|+.+|..++.           +.+++.|.+++..
T Consensus       204 rhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D  262 (289)
T KOG0567|consen  204 RHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGD  262 (289)
T ss_pred             HHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCC
Confidence            88888888877543          3677888877433      5568888887776           6688889899888


Q ss_pred             CChhHHHhHHHHHHHHhc
Q 017402          308 GSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       308 ~~~~~~~~a~~~L~~l~~  325 (372)
                      ..+-+++.+..+|-.+-.
T Consensus       263 ~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  263 EERVVRESCEVALDMLEY  280 (289)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            888888888877766543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=89.70  E-value=23  Score=36.21  Aligned_cols=251  Identities=16%  Similarity=0.101  Sum_probs=133.7

Q ss_pred             ChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          102 PLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      -.+.+...+.....++.. +.+.+..+.....+|.+..+..  +.+..++...+..+..++---. +..- -.-.++.++
T Consensus       368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~--d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~  443 (759)
T KOG0211|consen  368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL--DNALHVRSALASVITGLSPILP-KERT-ISELLPLLI  443 (759)
T ss_pred             hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh--cccchHHHHHhccccccCccCC-cCcC-ccccChhhh
Confidence            445666666667766643 2233455666667788877777  6777777777777766643211 1110 134567777


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA  259 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~  259 (372)
                      ..+++.+++++.+....+..+-... ........ ...+|.++.+-....- .++....+.+..++.... ...+.+. .
T Consensus       444 ~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~-~~~~~~~-~  519 (759)
T KOG0211|consen  444 GNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG-VEFFDEK-L  519 (759)
T ss_pred             hhcchhhHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh-hHHhhHH-H
Confidence            7888888999988887665443222 12222233 3567777776655544 667777777776665433 1111111 1


Q ss_pred             hHHHHHHH-h---hhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402          260 VPILMRLA-D---AGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR  335 (372)
Q Consensus       260 v~~L~~ll-~---~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  335 (372)
                      -+.+..-+ +   +-++.|...+..++..-. .+....  ..++.++.+...++-..|...+..+..++   +-.-+.+.
T Consensus       520 ~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la---~v~g~ei~  593 (759)
T KOG0211|consen  520 AELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELA---EVLGQEIT  593 (759)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHH---HHhccHHH
Confidence            11111111 1   115556655555554222 222222  13444444443333333443333333322   11123333


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      ..-.++.+.++..+..++||-.+++.|..+.
T Consensus       594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~  624 (759)
T KOG0211|consen  594 CEDLLPVFLDLVKDPVANVRINVAKHLPKIL  624 (759)
T ss_pred             HHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence            4446777777888888888888887776543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=89.69  E-value=0.22  Score=43.55  Aligned_cols=43  Identities=33%  Similarity=0.685  Sum_probs=34.9

Q ss_pred             CccccCCcccC----CCceecCCchHhhHHHHHHHHhcCCCCCCCCCC
Q 017402            8 DFKCPISLEIM----SDPVILSSGHTFDRASIQRWLDSGHRTCPITKL   51 (372)
Q Consensus         8 ~~~C~ic~~~~----~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~   51 (372)
                      ++-||||.+.+    .+|..++|||+....|++.....+ .+||.|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            45599999864    466678999998888888877776 99999976

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.26  E-value=2.4  Score=37.53  Aligned_cols=153  Identities=17%  Similarity=0.143  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcC--CHHHHHHHHhhc--CCChhHHHHHHHHHhcCCCCccccccccccC--ChH
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESG--AVSAVLNCLKIH--SDGFTLQEKALSLLLNLSLDDDNKVGLVAEG--AVS  177 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~  177 (372)
                      +.+.-++..++-++. ++..-..+...+  ....+..++...  ...+..+-.+++++.|+..++.++..+.+..  .+-
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~  156 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL  156 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence            456666666666665 555555555443  355666666532  2466789999999999998888887776642  233


Q ss_pred             HHHHHHhcC----ChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchh
Q 017402          178 RVVAALRFG----SPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       178 ~lv~~L~~~----~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      ..+..+...    +..++..++.++.|+|..-.....-.+ ....+..+++.+... .++++.-.++-+|++|...+...
T Consensus       157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence            333333333    688999999999999865422221111 013566677744332 44589999999999999777666


Q ss_pred             HHHHhc
Q 017402          252 KRVVSC  257 (372)
Q Consensus       252 ~~i~~~  257 (372)
                      ....+.
T Consensus       237 ~~~~~~  242 (268)
T PF08324_consen  237 KQLAKS  242 (268)
T ss_dssp             HHHCCC
T ss_pred             HHHHHH
Confidence            555553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.15  E-value=9  Score=37.49  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccc
Q 017402           94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVA  172 (372)
Q Consensus        94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~  172 (372)
                      ..|....++...+.=|...|.++...-|+..+.     ++..++++..  +.+..++..|++.|-.++.+ ++...    
T Consensus        27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~~~~~v~----   95 (556)
T PF05918_consen   27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE--DEDVQIRKQAIKGLPQLCKDNPEHVS----   95 (556)
T ss_dssp             HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT---SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh--cccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence            334333346777777888888888776765433     5778899998  88999999999999999987 34433    


Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402          173 EGAVSRVVAALRFGSPDCRAIAATIITSLAV  203 (372)
Q Consensus       173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~  203 (372)
                       .+.+.|+++|..+++......-.+|..+-.
T Consensus        96 -kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~  125 (556)
T PF05918_consen   96 -KVADVLVQLLQTDDPVELDAVKNSLMSLLK  125 (556)
T ss_dssp             -HHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence             345778888988876666666666665543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.03  E-value=2.4  Score=33.64  Aligned_cols=70  Identities=11%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|.+-+.+.++.++..|+.+|-.+..+.. ....++.+...+..|+.++.. .+..|+.+...+++...
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            67777788888899999999999999887754 677788888899999999988 79999999999997543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=88.98  E-value=16  Score=32.31  Aligned_cols=207  Identities=15%  Similarity=0.068  Sum_probs=126.0

Q ss_pred             HhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccC
Q 017402           95 VLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEG  174 (372)
Q Consensus        95 ~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g  174 (372)
                      .|.+  +++..|.+|+..|......-+...   ....-+..|++++.+.-.+......++..+..|......     ..+
T Consensus         7 ~Lts--ed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~~~   76 (262)
T PF14500_consen    7 YLTS--EDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----SPE   76 (262)
T ss_pred             hhCC--CCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----Chh
Confidence            3444  378899999999988776544221   233347888888864335566665557766666533221     122


Q ss_pred             ChHHHHHHHh-c-----CChHHHHHHHHHHHHhcccccchhhhccc-cchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          175 AVSRVVAALR-F-----GSPDCRAIAATIITSLAVVEVNKATIGDY-PYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       175 ~i~~lv~~L~-~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      ....+++.+- +     -....|.....++..+....  ...+... .+.+..++..+..+.+|.....+...+..+...
T Consensus        77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            2344444332 2     23556677777777775443  2222210 368999999999888888888888888877653


Q ss_pred             CchhHHHHhcCchHHHHHHH------------hhh----HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh
Q 017402          248 PENRKRVVSCGAVPILMRLA------------DAG----LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS  310 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll------------~~~----~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~  310 (372)
                      =+.      ....+.+.+.+            +++    ++. ...+...|+..+    .+.  +-+++.|++-|.+.++
T Consensus       155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~~  222 (262)
T PF14500_consen  155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTSP  222 (262)
T ss_pred             ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCCc
Confidence            331      22334444444            111    333 333344444432    222  3479999999999999


Q ss_pred             hHHHhHHHHHHHHhc
Q 017402          311 RAVQCSLFTLSCLCC  325 (372)
Q Consensus       311 ~~~~~a~~~L~~l~~  325 (372)
                      .++..++.+|...+.
T Consensus       223 ~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  223 SVKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.83  E-value=0.17  Score=42.97  Aligned_cols=60  Identities=18%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             cccCCccc-CCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402           10 KCPISLEI-MSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus        10 ~C~ic~~~-~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      .|--|... -.+|.. +.|+|.||..|...-.   ...||.|+.++. ...+..|  +-..+..+...
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir-~i~l~~s--lp~~ik~~F~d   66 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIR-IIQLNRS--LPTDIKSYFAD   66 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceee-eeecccc--cchhHHHHccC
Confidence            46656543 256654 5699999999985422   238999999876 4444444  44444455433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=88.82  E-value=11  Score=35.37  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             cccc-cCChHHHHHHHhcC---ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh-cCC--chHHHHHHHHHH
Q 017402          169 GLVA-EGAVSRVVAALRFG---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ-NGK--LIREKKEAATAL  241 (372)
Q Consensus       169 ~i~~-~g~i~~lv~~L~~~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~--~~~~~~~a~~aL  241 (372)
                      .+.+ ...+..|..++++.   ...+-..|+.++..+--++...-.+....|.++.+++.+. .+.  +.++....-.+|
T Consensus       100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l  179 (379)
T PF06025_consen  100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL  179 (379)
T ss_pred             cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            3445 45566666777664   5778889999999998777666555444899999999998 432  246777777788


Q ss_pred             HhhcCCCchhHHHHhcCchHHHHHHHhhh
Q 017402          242 YALTSFPENRKRVVSCGAVPILMRLADAG  270 (372)
Q Consensus       242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~  270 (372)
                      ..||.+.++.+++.+.+.++.+++++.+.
T Consensus       180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  180 SAICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             hHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence            99999999999999999999999999543

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=1.2  Score=37.13  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             CccccCCcccCC--CceecCCchHhhHHHHHHHHhc-------CCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMS--DPVILSSGHTFDRASIQRWLDS-------GHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~--~Pv~~~cgh~~c~~ci~~~~~~-------~~~~CP~c~~~~~   54 (372)
                      .--|.+|.-.+.  |-+.+.|-|.|.-.|+..|-..       ....||.|.+++.
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            345889988764  6677899999999999999864       2357999988766

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=88.42  E-value=0.33  Score=31.21  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhc-CCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-GHRTCPITKLP   52 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~~   52 (372)
                      +.|.||.|.+.+..       ..+...|....... ....||.|...
T Consensus         1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~   40 (54)
T PF05605_consen    1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR   40 (54)
T ss_pred             CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence            46899999994433       23555555555543 24579999754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=88.39  E-value=7.2  Score=40.59  Aligned_cols=144  Identities=15%  Similarity=0.088  Sum_probs=92.2

Q ss_pred             chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHH
Q 017402          216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREE  290 (372)
Q Consensus       216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~  290 (372)
                      ++++.|+..+++.+. .++..|++.+..++...+  ..+++ .+|...++++...     ---++-+|+.|+.-.--...
T Consensus       341 ~vie~Lls~l~d~dt-~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDT-VVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcc-hhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            789999999999888 999999999999987554  22222 2556666655221     33577778888774332222


Q ss_pred             HHhccchHHHHHHHHhc--------CChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHH
Q 017402          291 MMRVSGCVGVFVKMLKT--------GSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNL  361 (372)
Q Consensus       291 i~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~  361 (372)
                      ...  ..++.++.-+..        ....+|..|+.+.|.++... +..-+-++..=.-..|...+-+..-+.|++|..+
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            232  256666655532        24578999999999998653 2222223332223344445566778899999999


Q ss_pred             HHHH
Q 017402          362 IQTL  365 (372)
Q Consensus       362 L~~l  365 (372)
                      +...
T Consensus       495 lqE~  498 (1133)
T KOG1943|consen  495 LQEN  498 (1133)
T ss_pred             HHHH
Confidence            8643

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=88.31  E-value=30  Score=34.88  Aligned_cols=253  Identities=16%  Similarity=0.121  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhh--cChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402          106 KLESLTQLTKLSK--RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL  183 (372)
Q Consensus       106 ~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L  183 (372)
                      ...|++.+.++..  ..++-...+.+.=+++.+...++  +..--++..|+..+..+..+  .+....-..+.+.....+
T Consensus       433 ~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl  508 (970)
T COG5656         433 AEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCL  508 (970)
T ss_pred             HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHH
Confidence            3445555554443  22222333334334555666667  66677889999999888443  333223345677788888


Q ss_pred             hcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC--chhHHHHhcCch
Q 017402          184 RFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFP--ENRKRVVSCGAV  260 (372)
Q Consensus       184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v  260 (372)
                      ++.+..++..|+-|+.-+-.++...+++.+ ..+.++.|+.+-+.-+. +........+..=...+  .-...++. ..+
T Consensus       509 ~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~vMe~fVe~fseELspfa~eLa~-~Lv  586 (970)
T COG5656         509 KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMVMESFVEYFSEELSPFAPELAG-SLV  586 (970)
T ss_pred             hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHHHHHHHHHhHHhhchhHHHHHH-HHH
Confidence            888999999999999988887766666644 13566666666655444 44444444332211110  01111111 123


Q ss_pred             HHHHHHH----hhh-------HH---HHHHHHHHHhC---CHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402          261 PILMRLA----DAG-------LE---RAVEVLSILVK---CKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCSLFTLS  321 (372)
Q Consensus       261 ~~L~~ll----~~~-------~e---~a~~~L~~L~~---~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~  321 (372)
                      ...+++.    +.+       .+   .|..+|..+..   .-+++..+..  .....|.+--++++.-...-+.|+.+|-
T Consensus       587 ~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dild  666 (970)
T COG5656         587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILD  666 (970)
T ss_pred             HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3333333    111       11   23333333222   1122221111  0112333333444444455566666666


Q ss_pred             HHhcCCHHHHHHHHhcChhHHHHHHhhccc-HHHHHHHHHHHHHHh
Q 017402          322 CLCCCSQEICGDSRKEGVLDICMGLLEDDN-EKVRRNANNLIQTLS  366 (372)
Q Consensus       322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~-~~v~~~a~~~L~~l~  366 (372)
                      +....+.+.-..|  =|+.+.+.+++.+.. ..--+.++.+|.++-
T Consensus       667 g~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfi  710 (970)
T COG5656         667 GYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNFI  710 (970)
T ss_pred             hhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            6444433333222  356677777776644 244566667776553

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=88.27  E-value=20  Score=34.01  Aligned_cols=169  Identities=12%  Similarity=0.015  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402          188 PDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL  266 (372)
Q Consensus       188 ~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l  266 (372)
                      .+-+..|..-|..+...+ ..-+.=.- ..++..+++.|.+..+...++.|++.|..++.+...+-.=-..-+|..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence            444555555444443332 22222111 2467788888887444378899999999998876543211111233344443


Q ss_pred             Hhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChh
Q 017402          267 ADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVL  340 (372)
Q Consensus       267 l~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~  340 (372)
                      -.+.     ....=.++.-++.+..        ...|..+..++...+...-..++..+..++..= .+-..-++ ..+.
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P--------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia  450 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLP--------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA  450 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCc--------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence            3222     1111122222333211        224555556665555554555555666665431 11111112 4578


Q ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          341 DICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       341 ~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      |-+++.-.+.+..||+.|.-+|-.+-
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            88888888889999999988875543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=88.13  E-value=0.25  Score=51.62  Aligned_cols=47  Identities=30%  Similarity=0.473  Sum_probs=38.3

Q ss_pred             CCccccCCcccCCC-ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSD-PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..+.|++|.+++++ --+..|||.+|.+|...|... ...||.|+....
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIKG 1199 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhhh
Confidence            45689999999994 456779999999999999986 567999975443

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=88.09  E-value=19  Score=33.61  Aligned_cols=268  Identities=14%  Similarity=0.182  Sum_probs=137.9

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh--c------CCChhHHHHHHHHHhcCCCC
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI--H------SDGFTLQEKALSLLLNLSLD  163 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~------~~~~~~~~~a~~~L~~l~~~  163 (372)
                      +...|.++ ....-+...+..++-|+++.. .-+.+.....+..|+.+-+-  .      ..+..+...++++|.|+..+
T Consensus        50 i~~Vle~~-~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   50 IFEVLENG-EPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHhcC-CCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            45566655 234455567777777776432 33333222223334333221  0      13457899999999999888


Q ss_pred             -ccccccccccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCC-------
Q 017402          164 -DDNKVGLVAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGK-------  229 (372)
Q Consensus       164 -~~~~~~i~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~-------  229 (372)
                       ...+....+......+.+.+..     --..+...-.+.|+-++..+ +.+..+....++++.+.+++.+.-       
T Consensus       128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n  207 (532)
T KOG4464|consen  128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN  207 (532)
T ss_pred             cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence             4556666677666677766632     12344455566666665444 455554443688999999987521       


Q ss_pred             -c---h---HHHHHHHHHHHhhcCCCc--hh-HHHHhcCchHHHHHHH----hhh-----------------HHHHHHHH
Q 017402          230 -L---I---REKKEAATALYALTSFPE--NR-KRVVSCGAVPILMRLA----DAG-----------------LERAVEVL  278 (372)
Q Consensus       230 -~---~---~~~~~a~~aL~~L~~~~~--~~-~~i~~~g~v~~L~~ll----~~~-----------------~e~a~~~L  278 (372)
                       +   +   +...+++.++.|++.+..  .+ ......-.+..+++.+    ...                 .+.++.++
T Consensus       208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~  287 (532)
T KOG4464|consen  208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL  287 (532)
T ss_pred             CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence             0   1   234467777778876443  22 2222222222333222    000                 11222222


Q ss_pred             HHHhCCHhHHHHHHhccc-hHHHHHHHHhcCCh----------hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHh
Q 017402          279 SILVKCKEGREEMMRVSG-CVGVFVKMLKTGSS----------RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLL  347 (372)
Q Consensus       279 ~~L~~~~~~~~~i~~~~g-~i~~L~~ll~~~~~----------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll  347 (372)
                      .-.-.++..-+.+....| .+..+..+|.. ++          ......+.+|..+|.. ........+..++|+|.++.
T Consensus       288 ~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~-~~~qq~~~ss~~EllsPvlsVL~~car~-~R~~Rkylr~qVLPPLrDV~  365 (532)
T KOG4464|consen  288 AGAKPHECCSQCFEKRNGRNMDVILRLLNF-SEKQQEKESSLHELLSPVLSVLTECARS-HRVMRKYLRQQVLPPLRDVS  365 (532)
T ss_pred             cCCCCcchHHHHHHHhcchhHHHHHHHHHh-hHHHHhhhhhhhhhhhhHHHHHHHHHhh-hHHHHHHHHHhcCCchhhhh
Confidence            222223333332322222 34555555432 11          1222445667776665 44445555556999999887


Q ss_pred             hcc--cHHHHHHHHHHHH
Q 017402          348 EDD--NEKVRRNANNLIQ  363 (372)
Q Consensus       348 ~~~--~~~v~~~a~~~L~  363 (372)
                      +-.  +..+|.+-++++.
T Consensus       366 ~RPEvg~tLRnkl~Rlmt  383 (532)
T KOG4464|consen  366 QRPEVGQTLRNKLVRLMT  383 (532)
T ss_pred             cCcchhHHHHHhhHhhee
Confidence            753  4556666555543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.90  E-value=24  Score=37.33  Aligned_cols=213  Identities=14%  Similarity=0.123  Sum_probs=111.1

Q ss_pred             CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc--CCChhHHHHHHHHHhcCCCC-c-cccccccccCC
Q 017402          100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH--SDGFTLQEKALSLLLNLSLD-D-DNKVGLVAEGA  175 (372)
Q Consensus       100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~~a~~~L~~l~~~-~-~~~~~i~~~g~  175 (372)
                      +++..+|.++.+.|..++.. ++......+  -+..+.+.|.++  +.+...+...+.+|..|-.. + +....+  ...
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~  739 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKL  739 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHH
Confidence            35788999999999999985 322222222  233344433321  34555666666666655332 1 222211  223


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcc----cccchhhhccccchHHHHHHHhhcC--CchHHHHHH--HHHHHhhcCC
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAV----VEVNKATIGDYPYAINALVSLLQNG--KLIREKKEA--ATALYALTSF  247 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a--~~aL~~L~~~  247 (372)
                      |+.++-.++.-+...+..|-..|..+..    .++..+.  . ...|...+..+..+  .+ ..+..+  +-++..+...
T Consensus       740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGD-STRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHH
Confidence            4555555566788888888888887762    1112111  1 23566666666544  22 223222  2333333321


Q ss_pred             CchhHHHHhcCchHHHHHHH----hhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402          248 PENRKRVVSCGAVPILMRLA----DAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF  318 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll----~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~  318 (372)
                      .   ..+...+.+..+++++    .+.    ...|+..+..++. .++..-..-. +..++.+..++++....++...-.
T Consensus       816 ~---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  816 F---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             H---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            1   2223333444444444    222    4456666666655 2332222222 336788888877777777777777


Q ss_pred             HHHHHhc
Q 017402          319 TLSCLCC  325 (372)
Q Consensus       319 ~L~~l~~  325 (372)
                      .|-.++.
T Consensus       892 LlekLir  898 (1176)
T KOG1248|consen  892 LLEKLIR  898 (1176)
T ss_pred             HHHHHHH
Confidence            7766654

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.88  E-value=3.6  Score=32.10  Aligned_cols=70  Identities=20%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHH-HHHHHHhcChhHHHHHHhhc---ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE-ICGDSRKEGVLDICMGLLED---DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~~~~l~~ll~~---~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|-+-|+++++.++..|+.+|-.+..+... ...++.....+..|+.++..   .+..||.++..++....
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~  111 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence            677788888889999999999999999888654 67777776777778888875   48899999999997554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=87.71  E-value=11  Score=38.55  Aligned_cols=165  Identities=15%  Similarity=0.156  Sum_probs=100.5

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      +...|..+ ..+.+|..+...+.+++..-+   ......+.++.+..+..  +....+++.|...+.++...-+.... .
T Consensus       241 ~~~~lc~d-~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~--DdqdsVr~~a~~~~~~l~~l~~~~~d-~  313 (759)
T KOG0211|consen  241 IVQSLCQD-DTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLR--DDQDSVREAAVESLVSLLDLLDDDDD-V  313 (759)
T ss_pred             HHHhhccc-cchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhh--cchhhHHHHHHHHHHHHHHhcCCchh-h
Confidence            33444443 367888888888888887433   36677888999999998  67788888888888776433111101 1


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC--CCc
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS--FPE  249 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~--~~~  249 (372)
                      ...+.+.++...++++..++...+.....++..-..  .... ...+++...++++... +.+..++.-...++.  +.+
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~~~-e~r~a~a~~~~~l~~~l~~~  389 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDEEW-EVRYAIAKKVQKLACYLNAS  389 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcchhh-hhhHHhhcchHHHhhhcCcc
Confidence            244667788888777777777766666666543222  3333 3567777777776654 455444444444443  223


Q ss_pred             hhHHHHhcCchHHHHHHH
Q 017402          250 NRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll  267 (372)
                      ....+....+++.+-.++
T Consensus       390 ~~~~i~~~~ilp~~~~lv  407 (759)
T KOG0211|consen  390 CYPNIPDSSILPEVQVLV  407 (759)
T ss_pred             cccccchhhhhHHHHHHH
Confidence            444444444555555554

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.63  E-value=0.32  Score=45.36  Aligned_cols=47  Identities=21%  Similarity=0.402  Sum_probs=32.3

Q ss_pred             CccccCCc-ccCCCce---ecCCchHhhHHHHHHHHhc-----CCCCCCC--CCCCCC
Q 017402            8 DFKCPISL-EIMSDPV---ILSSGHTFDRASIQRWLDS-----GHRTCPI--TKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~-~~~~~Pv---~~~cgh~~c~~ci~~~~~~-----~~~~CP~--c~~~~~   54 (372)
                      ..+|.||. +.+...-   +..|+|.||..|..+++..     ....||.  |...++
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~  203 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT  203 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence            56899999 4433212   3569999999999999862     2347877  555444

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.51  E-value=4.3  Score=31.07  Aligned_cols=72  Identities=22%  Similarity=0.289  Sum_probs=54.4

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhc-ChhHHHHHHhh-----c---ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKE-GVLDICMGLLE-----D---DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~-g~~~~l~~ll~-----~---~~~~v~~~a~~~L~~l~  366 (372)
                      .+..|.+-|++.++.++..++.+|..+|..+. +.+..+.+. ..|..+.+.--     .   .+..||..|..++..+.
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            56677777778889999999999999998655 666666553 46777666654     1   25689999999999876


Q ss_pred             cC
Q 017402          367 GN  368 (372)
Q Consensus       367 ~~  368 (372)
                      ..
T Consensus       119 ~~  120 (122)
T cd03572         119 SY  120 (122)
T ss_pred             cc
Confidence            54

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.35  E-value=4  Score=32.25  Aligned_cols=71  Identities=18%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             chHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402          296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~  366 (372)
                      .++..|.+-|+++++.++-.|+.+|-.+..+. .....++.+.+.+..|+.++.. .+++||+++..++..-.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence            36778888888899999999999999988874 5677888888899999999874 68899999999987543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=87.00  E-value=19  Score=31.11  Aligned_cols=136  Identities=20%  Similarity=0.148  Sum_probs=84.1

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL  170 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  170 (372)
                      .++..+.+. ++++.+...+..|..++..+..+..     -++..|..+..  .++.+....+.+.+..+....+-.-  
T Consensus         4 ~L~~~l~~~-~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~--~~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    4 LLLYKLGKI-SDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVE--QGSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             HHHHHhcCC-CChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHc--CCchhHHHHHHHHHHHHHHhCchHH--
Confidence            345545444 5788899999999999986511221     13444555555  4556666677777777765433211  


Q ss_pred             cccCChHHHHHHH--h------cC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh-hcCCchHHHHHHHH
Q 017402          171 VAEGAVSRVVAAL--R------FG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL-QNGKLIREKKEAAT  239 (372)
Q Consensus       171 ~~~g~i~~lv~~L--~------~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~  239 (372)
                         +.+..++..+  +      ++  ..+.....+..+..++...++    .. ...++.+...+ ...++ .++..++.
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g-~~ll~~ls~~L~~~~~~-~~~alale  144 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HG-VDLLPLLSGCLNQSCDE-VAQALALE  144 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hH-HHHHHHHHHHHhccccH-HHHHHHHH
Confidence               4455555541  1      11  233444455677777766655    22 35788888888 45555 78889999


Q ss_pred             HHHhhc
Q 017402          240 ALYALT  245 (372)
Q Consensus       240 aL~~L~  245 (372)
                      +|..|+
T Consensus       145 ~l~~Lc  150 (234)
T PF12530_consen  145 ALAPLC  150 (234)
T ss_pred             HHHHHH
Confidence            999998

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.72  E-value=20  Score=31.62  Aligned_cols=178  Identities=16%  Similarity=0.149  Sum_probs=100.5

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-------HHHHHHhhcCCHHHHHHHHhhcCCC----hhHHHHHHHH
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDS-------ASRRKLTESGAVSAVLNCLKIHSDG----FTLQEKALSL  156 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~i~~~g~i~~L~~lL~~~~~~----~~~~~~a~~~  156 (372)
                      ..+-+..++-+|-.+...-..+++.|..++.-..       +.|-.+.=.+.+|.++.-+.  +.+    ......++..
T Consensus        61 ~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d--~~~~i~~~~~~~~~A~~  138 (262)
T PF14225_consen   61 NFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFD--DPNPIQPDQECIEIAEA  138 (262)
T ss_pred             CchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhc--ccccccccHHHHHHHHH
Confidence            3444555555554444555567777777775321       12222222233344444444  223    1445666777


Q ss_pred             HhcCCCCccccccccccCChHHHHHHHhcCC----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH
Q 017402          157 LLNLSLDDDNKVGLVAEGAVSRVVAALRFGS----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR  232 (372)
Q Consensus       157 L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  232 (372)
                      |..++....       .+.+..++.....+.    .+....++..|..-     +-... . ...+..|+++|.++.. -
T Consensus       139 La~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~-----f~P~~-~-~~~l~~Ll~lL~n~~~-w  203 (262)
T PF14225_consen  139 LAQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREA-----FFPDH-E-FQILTFLLGLLENGPP-W  203 (262)
T ss_pred             HHHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----hCchh-H-HHHHHHHHHHHhCCcH-H
Confidence            777773211       223444554444332    23333333333321     11111 1 3578889999988877 8


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhC
Q 017402          233 EKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVK  283 (372)
Q Consensus       233 ~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~  283 (372)
                      .+...+..|+.+-..-+.+.. ...+.+.++++++.++ ...|+.+|.+...
T Consensus       204 ~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  204 LRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence            999999999998776554433 4556899999999887 7778887776544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.63  E-value=27  Score=38.10  Aligned_cols=253  Identities=14%  Similarity=0.129  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHHHHHHhhcChHH-HHHHhhcCCHHHHHHHHhhcCCChhHH-HHHHHHHhcCCCC--ccccccccc----
Q 017402          101 SPLESKLESLTQLTKLSKRDSAS-RRKLTESGAVSAVLNCLKIHSDGFTLQ-EKALSLLLNLSLD--DDNKVGLVA----  172 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~-~~a~~~L~~l~~~--~~~~~~i~~----  172 (372)
                      +-+++|.-++..+..+++..... +..+  ...||.|++...  .-.+.+. +.++++ .|....  |..|..+.+    
T Consensus      1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s--~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspm 1217 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYS--ELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPM 1217 (1702)
T ss_pred             chHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHcc--ccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcH
Confidence            35788999999999999865431 1111  134555555554  3333332 222322 222111  111111111    


Q ss_pred             ----------------cCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402          173 ----------------EGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK  235 (372)
Q Consensus       173 ----------------~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  235 (372)
                                      ...+|.+.++++.+ ....|..++..+..|+.-- ..++---....+.+++..+++.++ .+++
T Consensus      1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~sgKll~al~~g~~dRNe-sv~k 1295 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPYSGKLLRALFPGAKDRNE-SVRK 1295 (1702)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcchhHHHHHHhhccccccH-HHHH
Confidence                            23567777777665 4555666666666665321 111111102377888888888776 7888


Q ss_pred             HHHHHHHhhcCCC--chhHHHHhcCchHHHH-HHHh--hh-HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC
Q 017402          236 EAATALYALTSFP--ENRKRVVSCGAVPILM-RLAD--AG-LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS  309 (372)
Q Consensus       236 ~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~-~ll~--~~-~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~  309 (372)
                      .-+.|...|+...  +...+.++     .++ .++.  ++ ...++.++.+++.+..  +.+-++...+-+|+-+-....
T Consensus      1296 afAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~s~--e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1296 AFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESLKSISCATISNIANYSQ--EMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHhHH
Confidence            8778888877633  23333333     333 2331  11 4557777777665432  233333344555544443322


Q ss_pred             -hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          310 -SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       310 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                       ...++.=-.+...+...+....+....+=+...+.....+....+|..++.+++....
T Consensus      1369 ~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1369 EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred             HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence             1222222223333343333333333333345555566666778888888888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.60  E-value=21  Score=36.42  Aligned_cols=193  Identities=16%  Similarity=0.150  Sum_probs=122.1

Q ss_pred             HHhcCCCC-ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHH--HHHHHhhcCCch
Q 017402          156 LLLNLSLD-DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN--ALVSLLQNGKLI  231 (372)
Q Consensus       156 ~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~--~Lv~ll~~~~~~  231 (372)
                      +|.++... +++.+.+.+.|++..+...++. ...+.+..+.+.+.+++...+++..... ...+.  .+-.++..-+..
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcchh
Confidence            77777666 7888999999999999999986 5788889999999999987766655443 12222  222333333333


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHH-HHHhCCHhHHHHHHhccchHHH-HHHHHhc-C
Q 017402          232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVL-SILVKCKEGREEMMRVSGCVGV-FVKMLKT-G  308 (372)
Q Consensus       232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L-~~L~~~~~~~~~i~~~~g~i~~-L~~ll~~-~  308 (372)
                      +..-.|+..|..+..+.+.   ..+.+.           ++.+...+ ............... ...+.. +..++.. .
T Consensus       573 ersY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il~~s~  637 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRILRLSK  637 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHhcccC
Confidence            5666788888887765443   111111           22222222 222333333332222 223333 5455543 4


Q ss_pred             ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHH
Q 017402          309 SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQT  364 (372)
Q Consensus       309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~  364 (372)
                      .+..+--|++++.++....+++++.+.+.|+++.+.++-... -..++..+...+..
T Consensus       638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            556677888999999988899999999999999888876543 55666666665544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=86.15  E-value=39  Score=33.79  Aligned_cols=237  Identities=13%  Similarity=0.108  Sum_probs=134.2

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC--hhHHHHHHHHHhcCCCCccccccccccCChHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG--FTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRV  179 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~l  179 (372)
                      +.+.+.+-.+.|.+-.   +..-+.++..-.++.|+..+.  .++  ..+....+..-.-+...+      .+.+++|.|
T Consensus       267 s~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~--~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p~l  335 (690)
T KOG1243|consen  267 SVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE--FGDAASDFLTPLFKLGKDLDEEE------YQVRIIPVL  335 (690)
T ss_pred             cHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh--ccccchhhhhHHHHhhhhccccc------cccchhhhH
Confidence            4566666666666522   234555666667777777766  333  233333333333332222      567899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402          180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA  259 (372)
Q Consensus       180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~  259 (372)
                      +++++..|..+|..-+.-+-...  +..-..+.. ..++|.+..-+.+.+. .+++.++.++..|+..=.-+  .+.   
T Consensus       336 ~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~-d~I~phv~~G~~DTn~-~Lre~Tlksm~~La~kL~~~--~Ln---  406 (690)
T KOG1243|consen  336 LKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILN-DQIFPHVALGFLDTNA-TLREQTLKSMAVLAPKLSKR--NLN---  406 (690)
T ss_pred             HHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhc-chhHHHHHhhcccCCH-HHHHHHHHHHHHHHhhhchh--hhc---
Confidence            99999999999986665555543  233344555 5799999999999888 99999999888777521111  011   


Q ss_pred             hHHHHHHHhh------h--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH
Q 017402          260 VPILMRLADA------G--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC  331 (372)
Q Consensus       260 v~~L~~ll~~------~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  331 (372)
                       -.+++.+..      +  +-+..-+|..++.+.   .......-.+.++.+.+++.-...+..+..+++..+...+ ..
T Consensus       407 -~Ellr~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-~~  481 (690)
T KOG1243|consen  407 -GELLRYLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-QS  481 (690)
T ss_pred             -HHHHHHHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-hh
Confidence             112222211      0  111111112222211   0111111123344555555556678888888887665522 11


Q ss_pred             HHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          332 GDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       332 ~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .  +..-+++.+.-+.-+.+..+|..|-.+++.+
T Consensus       482 ~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  482 E--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             h--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence            1  1233677777777778888888888777643

>PLN02189 cellulose synthase

Probab=86.15  E-value=0.43  Score=49.30  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             ccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|.||.+-.-     +|.+.  .||...|+.|++-=.++++..||.|++.+.
T Consensus        35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK   87 (1040)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            37999998533     45443  388889999998777778899999998876

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=85.93  E-value=30  Score=35.77  Aligned_cols=184  Identities=13%  Similarity=0.083  Sum_probs=106.1

Q ss_pred             cCChHHHHHHHh----cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          173 EGAVSRVVAALR----FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       173 ~g~i~~lv~~L~----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      .+.++.+...+.    +.+-.-|..|+..+........ +.......|.+-.+++....+.+..+...|+..|..++..-
T Consensus       248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l  326 (815)
T KOG1820|consen  248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL  326 (815)
T ss_pred             hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence            455555555443    3455556666666665544333 23322224566666666555544478888888888888632


Q ss_pred             chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      .....=...+..+.+++-+...    .+.++.++-..+.       ...-....+.+..++.++++..+......+...-
T Consensus       327 r~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~  399 (815)
T KOG1820|consen  327 RPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKL  399 (815)
T ss_pred             chhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence            2112222335677777777433    4444444443333       1111335677778888899998887666655543


Q ss_pred             cCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          325 CCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       325 ~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                      .... .....---.++++.++....+.+..||.+|..++-.
T Consensus       400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~  440 (815)
T KOG1820|consen  400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAA  440 (815)
T ss_pred             hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence            3222 111122224578888888888999999999888753

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=85.63  E-value=0.7  Score=29.43  Aligned_cols=30  Identities=20%  Similarity=0.582  Sum_probs=24.2

Q ss_pred             CccccCCcccC--CCceec--CCchHhhHHHHHH
Q 017402            8 DFKCPISLEIM--SDPVIL--SSGHTFDRASIQR   37 (372)
Q Consensus         8 ~~~C~ic~~~~--~~Pv~~--~cgh~~c~~ci~~   37 (372)
                      .-.|++|.+.|  .|.++.  .||-.|.|.|.++
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            45799999999  677664  4999999998764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.62  E-value=16  Score=39.66  Aligned_cols=162  Identities=11%  Similarity=0.068  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hh-HHHHhcCchHHHHHHHhh
Q 017402          192 AIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NR-KRVVSCGAVPILMRLADA  269 (372)
Q Consensus       192 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~-~~i~~~g~v~~L~~ll~~  269 (372)
                      ..+.++...++..   +.......+.+..++..+.++.. .++..|+++|.++..-+. .. ..-++.|+...+.+---+
T Consensus       795 ~~a~li~~~la~~---r~f~~sfD~yLk~Il~~l~e~~i-alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas  870 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHA---RSFSQSFDPYLKLILSVLGENAI-ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS  870 (1692)
T ss_pred             hhHHHHHHHHHhh---hHHHHhhHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence            3444555555433   22222224678888888886666 899999999999987554 22 233454554444432222


Q ss_pred             hHHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402          270 GLERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE  348 (372)
Q Consensus       270 ~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~  348 (372)
                      -+|.|+.+++.... +++.-.+      ....+.+-+.+.+..+|.++.+++..+|...|+.-.. .+  +...++.-..
T Consensus       871 VREAaldLvGrfvl~~~e~~~q------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~--~cakmlrRv~  941 (1692)
T KOG1020|consen  871 VREAALDLVGRFVLSIPELIFQ------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VD--MCAKMLRRVN  941 (1692)
T ss_pred             HHHHHHHHHhhhhhccHHHHHH------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HH--HHHHHHHHhc
Confidence            27888888875443 2222111      2334444455667889999999999999876644221 11  1222222223


Q ss_pred             cccHHHHHHHHHHHHHHh
Q 017402          349 DDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       349 ~~~~~v~~~a~~~L~~l~  366 (372)
                      ++...+++-+...+..|+
T Consensus       942 DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  942 DEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             cchhHHHHHHHHHHHHHh
Confidence            333446666666665544

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.50  E-value=4.6  Score=32.83  Aligned_cols=74  Identities=16%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      ..+..+..+|++.+.+.|-.++..+..................-+..|+..|+..++..+.+.++.+|..|...
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~   98 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL   98 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34566777788888888888888888876543332222332357888999999887778888888888877643

>PLN02436 cellulose synthase A

Probab=85.39  E-value=0.48  Score=49.03  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|.||.+-.     -+|.+.  .||...|+.|++-=..+++..||.|++.+.
T Consensus        37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~   89 (1094)
T PLN02436         37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK   89 (1094)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            3799999853     245443  388889999997777778889999998876

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.19  E-value=5.6  Score=31.29  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|.+-+.++++.++..|+.+|-.+..+. .....++.+.+.+..|+.++..      .+..||.+...++..-.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            6777888888999999999999999988764 5677888888899899999853      47899999999887543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=85.17  E-value=17  Score=33.84  Aligned_cols=236  Identities=13%  Similarity=0.058  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      .++..+...+...+...++.-..+.. ..+..+..+|.+-   .....+...++..|..++.....+..+...+.++.++
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii  189 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII  189 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence            44555666666666543332222221 2445555555421   1223456667777766555444333333344445454


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHhcCc
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVSCGA  259 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~  259 (372)
                      +-+             ++=+|+..++.-+.+..  .-.+-+-.-+...+...-+..|...|..|+..-+ ....++- +.
T Consensus       190 e~V-------------I~Pnl~~~e~D~ElfEd--dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~  253 (370)
T PF08506_consen  190 EKV-------------IFPNLCLREEDEELFED--DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QY  253 (370)
T ss_dssp             HHT-------------HHHHHS--HHHHHHHHH--SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHh-------------ccCccCCCHHHHHHHcc--CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence            432             34455554444444333  3344443333322222567788888888885311 1111111 12


Q ss_pred             hHHHHHHH-hhh------HHHHHHHHHHHhCCHhHH-------------HHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          260 VPILMRLA-DAG------LERAVEVLSILVKCKEGR-------------EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       260 v~~L~~ll-~~~------~e~a~~~L~~L~~~~~~~-------------~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      +..++.-. .++      ++.|+.++..|+.-....             ..+.. .-.+|-|. --.+..+-++-.|++.
T Consensus       254 i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~-~~v~peL~-~~~~~~piLka~aik~  331 (370)
T PF08506_consen  254 IQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS-QHVLPELQ-PDVNSHPILKADAIKF  331 (370)
T ss_dssp             HHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH-HHTCHHHH--SS-S-HHHHHHHHHH
T ss_pred             HHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH-HHhHHHhc-ccCCCCcchHHHHHHH
Confidence            22222211 111      566888888888754321             11222 11233332 0012344556667766


Q ss_pred             HHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      +...-..-+.   ... .++++.++..+.+++..|+..|+.++
T Consensus       332 ~~~Fr~~l~~---~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  332 LYTFRNQLPK---EQL-LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHGGGS-H---HHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHhhCCH---HHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            6665544221   222 34899999999999999999998764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=85.00  E-value=0.52  Score=48.88  Aligned_cols=46  Identities=17%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|.||.+-.     -+|.+.  .||-..||.|++-=.++++..||.|++.+.
T Consensus        18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            3799999853     355543  388889999997767788899999998876

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.83  E-value=1.1  Score=30.06  Aligned_cols=44  Identities=25%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHH
Q 017402           20 DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS   67 (372)
Q Consensus        20 ~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~   67 (372)
                      |..+..-.++||..|.+..+   ...||.|+..+. ....+|...+.+
T Consensus        21 dA~ICtfEcTFCadCae~~l---~g~CPnCGGelv-~RP~RPaa~L~r   64 (84)
T COG3813          21 DARICTFECTFCADCAENRL---HGLCPNCGGELV-ARPIRPAAKLAR   64 (84)
T ss_pred             ceeEEEEeeehhHhHHHHhh---cCcCCCCCchhh-cCcCChHHHHhh
Confidence            33444456899999998766   448999999888 777777555443

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=84.21  E-value=7.3  Score=30.38  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l  365 (372)
                      ++..|-+-|+++++.++..|+.+|-.+..+. .....++.+.+.+..|..++...  .+.|++++..++...
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W  109 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW  109 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence            5677788888899999999999999988874 56778888888999999988863  345999999888643

Unpublished observations. Domain of unknown function.

>PLN02195 cellulose synthase A

Probab=83.76  E-value=0.76  Score=47.25  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             cccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402           10 KCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus        10 ~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .|.||.+..     -+|.+.  .||...||.|++-=.++|+..||.|++.+.
T Consensus         8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk   59 (977)
T PLN02195          8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD   59 (977)
T ss_pred             cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence            699999843     366553  489899999997666778899999998877

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=83.69  E-value=44  Score=32.31  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=50.3

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHH-HHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVS-AVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~-~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      .....+-|-......+.|..+++-|..+...... +     .|+.. .+.+.+..+ ..++--..-+.+|..|+.+...-
T Consensus        29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~-----~~~~R~~fF~~I~~~-~~~~d~~~~l~aL~~LT~~Grdi  101 (464)
T PF11864_consen   29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-S-----SGLMRAEFFRDISDP-SNDDDFDLRLEALIALTDNGRDI  101 (464)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-c-----cHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHcCCcCc
Confidence            3445555555555678899899988888875542 1     22222 233444432 33443445555555565543322


Q ss_pred             ccccccCChHHHHHHHh
Q 017402          168 VGLVAEGAVSRVVAALR  184 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~  184 (372)
                       ...+.+..+.|...|.
T Consensus       102 -~~~~~~i~~~L~~wl~  117 (464)
T PF11864_consen  102 -DFFEYEIGPFLLSWLE  117 (464)
T ss_pred             -hhcccchHHHHHHHHH
Confidence             3356788888888884

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=83.57  E-value=0.77  Score=38.63  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             CccccCCcccCCCcee-cCCchHhhHHHHHHHHhc-CCCCCCC--CCCCCCCCCCCCccHHHHH
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDS-GHRTCPI--TKLPLPDQPSLIPNHALRS   67 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~-~~~~CP~--c~~~~~~~~~~~~n~~l~~   67 (372)
                      +.+|||..+...-|+. ..|.|.|.+.-|..++.. -...||.  |.+... ...+..++-++.
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~-~~~~v~d~IlE~  251 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEV-VDPYVCDHILEK  251 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhee-ccchhhhHHHHH
Confidence            4689999999999986 569999999999888763 2346888  766665 555555554443

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.44  E-value=0.83  Score=39.72  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             CchHhhHHHHHHHHhc------------CCCCCCCCCCCCC
Q 017402           26 SGHTFDRASIQRWLDS------------GHRTCPITKLPLP   54 (372)
Q Consensus        26 cgh~~c~~ci~~~~~~------------~~~~CP~c~~~~~   54 (372)
                      |....|+.|+.+|+..            ++-+||.||+.+.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            5556799999999852            4558999999887

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=83.42  E-value=0.48  Score=29.45  Aligned_cols=39  Identities=33%  Similarity=0.734  Sum_probs=23.0

Q ss_pred             ccCCcccCC--CceecCCch-----HhhHHHHHHHHhc-CCCCCCCC
Q 017402           11 CPISLEIMS--DPVILSSGH-----TFDRASIQRWLDS-GHRTCPIT   49 (372)
Q Consensus        11 C~ic~~~~~--~Pv~~~cgh-----~~c~~ci~~~~~~-~~~~CP~c   49 (372)
                      |-||.+.-.  +|.+.||+.     ..++.|+.+|+.. +...|+.|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            567776533  257777753     2477899999974 45678876

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.33  E-value=7.8  Score=38.94  Aligned_cols=164  Identities=16%  Similarity=0.112  Sum_probs=85.6

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC---CchHHHHHHHHHHHhhc----
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG---KLIREKKEAATALYALT----  245 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~----  245 (372)
                      ..+..+..++.++.....+ |..+|..+.... ..-      ...+..+..+++..   ..+.+...|+.+++.|.    
T Consensus       395 ~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c  467 (618)
T PF01347_consen  395 PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC  467 (618)
T ss_dssp             HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence            3677777777765433322 445555554321 111      24566666666542   22356666666666554    


Q ss_pred             CCC------chhHHHHhcCchHHHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC---
Q 017402          246 SFP------ENRKRVVSCGAVPILMRLADAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG---  308 (372)
Q Consensus       246 ~~~------~~~~~i~~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~---  308 (372)
                      ...      ......+....++.|...+...        .-.++.+|+|+-.           ...++.|..++...   
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S
T ss_pred             ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhcccc
Confidence            331      1122223334677777777422        2346788888754           44677777776554   


Q ss_pred             ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHH
Q 017402          309 SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQ  363 (372)
Q Consensus       309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~  363 (372)
                      +..+|..|+.+|..++...++.        +.+.++.+..+  .+.++|-+|..+|-
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm  585 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILM  585 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence            5677788888888776554433        34455555554  35677777765553

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.08  E-value=11  Score=36.76  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             hccCCChHHHHHHHHHHHH-HhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC
Q 017402           97 TSKSSPLESKLESLTQLTK-LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA  175 (372)
Q Consensus        97 ~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  175 (372)
                      +.+.+.++-...-+..+-+ .--++|+. ..++ .|.+.-+++.+.  +.+..++...+.+|.-+...-.......-.|.
T Consensus        58 Kk~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L  133 (885)
T COG5218          58 KKNPSIPDRILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGL  133 (885)
T ss_pred             ccCCCcHHHHHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3433444433334443333 22335544 2222 345666667676  78889999999998887644222223344677


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV  255 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~  255 (372)
                      +..|.+-+-+..+.+|..|..+|..+-....+-+     ......|+.+++.+.+.+++..|   |.|+..++..+..++
T Consensus       134 ~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-----n~~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~Il  205 (885)
T COG5218         134 LEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-----NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCIL  205 (885)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-----HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHH
Confidence            7777777767788899999888887753322221     13444677777766554777654   457776666555554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.83  E-value=2.7  Score=42.73  Aligned_cols=138  Identities=17%  Similarity=0.094  Sum_probs=93.3

Q ss_pred             HHHHHhhcCCHHHHHHHHhhc------CCChhHHHHHHHHHhcCCCCccccccccc--------cCChHHHHHHHhc---
Q 017402          123 SRRKLTESGAVSAVLNCLKIH------SDGFTLQEKALSLLLNLSLDDDNKVGLVA--------EGAVSRVVAALRF---  185 (372)
Q Consensus       123 ~~~~i~~~g~i~~L~~lL~~~------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--------~g~i~~lv~~L~~---  185 (372)
                      -.+.+.+.+++..++.+....      +...++...|+.+|+.+..-++.+..+..        ..||..++..-.-   
T Consensus       593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            456677888888888887531      23467889999999998877777665542        1244444433221   


Q ss_pred             -CChHHHHHHHHHHHHhcccc-cchhh----------------------------------hccccchHHHHHHHhhcCC
Q 017402          186 -GSPDCRAIAATIITSLAVVE-VNKAT----------------------------------IGDYPYAINALVSLLQNGK  229 (372)
Q Consensus       186 -~~~~~~~~a~~~L~~ls~~~-~~~~~----------------------------------i~~~~g~i~~Lv~ll~~~~  229 (372)
                       -|++++..|+..|.|+...+ +++..                                  .+...++|..|+++|+-..
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence             27888888888888776544 22111                                  1112467889999998543


Q ss_pred             c----hHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          230 L----IREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       230 ~----~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      +    ..++..|+.+|.-|+.++..|+.+.+...+
T Consensus       753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv  787 (1516)
T KOG1832|consen  753 PPTTADCIRALACRVLLGLARDDTVRQILTKLPLV  787 (1516)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence            2    378889999999999999888887766554

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.75  E-value=5  Score=29.01  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      +...+..|.++.+.+|..+...|..|.....  ..+....+++..+...++++++ =+--+|..+|..|+..
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHH
Confidence            4556677778889999999999999986655  2333335788888898988877 8999999999998863

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=82.75  E-value=9.3  Score=30.87  Aligned_cols=140  Identities=13%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      ++..|+.. .+...|.++++.|+.+-.=|| ++....+.+. +   ..-.. ..+.................++    ..
T Consensus        15 L~~iLk~e-~s~~iR~E~lr~lGilGALDP-~~~k~~~~~~-~---~~~~~-~~~~~~~~~~l~~~~~~~~~ee----~y   83 (160)
T PF11865_consen   15 LLNILKTE-QSQSIRREALRVLGILGALDP-YKHKSIQKSL-D---SKSSE-NSNDESTDISLPMMGISPSSEE----YY   83 (160)
T ss_pred             HHHHHHhC-CCHHHHHHHHHHhhhccccCc-HHHhcccccC-C---ccccc-cccccchhhHHhhccCCCchHH----HH
Confidence            55667665 568999999999999998888 4443222211 1   00000 1111222222211111111222    33


Q ss_pred             ccCChHHHHHHHhcCChHH-HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          172 AEGAVSRVVAALRFGSPDC-RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~-~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      -..++..|++.|++.+... ...+..++.++-.....+- ..-...++|.+++.++...+ ..++....-|..|
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~l  155 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADL  155 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence            3456888999998764332 3345566655543322222 32224699999999998776 7777766666554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.73  E-value=18  Score=35.44  Aligned_cols=113  Identities=13%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      .|.+..+++-+.+.+..+|..++.+|.-++..- +.-+.+.  .|.+..|.+-+.+... .++.+|+.+|+.+-....+-
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DRE~-~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDREK-AVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcchH-HHHHHHHHHHHHHHhccCCh
Confidence            566777777778889999999999999887433 2223333  3788888888877666 89999999998765433332


Q ss_pred             HHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHH
Q 017402          252 KRVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMM  292 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~  292 (372)
                      ...    .+..|+.+++.+  .|.=-.+|.|+..+...+.-++
T Consensus       167 en~----~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il  205 (885)
T COG5218         167 ENR----IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL  205 (885)
T ss_pred             HHH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence            222    223556666433  4444445667766544444333

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=82.34  E-value=14  Score=29.76  Aligned_cols=139  Identities=12%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402          174 GAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK  252 (372)
Q Consensus       174 g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  252 (372)
                      ..++.|.++|+.+ +.++|..+.++|+.|..-|.++.+...  +..+.-.  -.+..+ .....   .+.+.... ..-.
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~~-~~~~~---~l~~~~~~-~~~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSND-ESTDI---SLPMMGIS-PSSE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--cccccc-cchhh---HHhhccCC-CchH
Confidence            3467788888775 689999999999999888877666333  1111000  001111 11111   11111111 1233


Q ss_pred             HHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHH-HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          253 RVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGR-EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       253 ~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~-~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      ...-..++..|+++|++.     ...++.++.++......+ -.+.  +..+|.+++.++..++..++.-..-|..+
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344445778888888554     335666666665322111 2222  34789999999877777777655555444

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=82.18  E-value=1  Score=41.25  Aligned_cols=29  Identities=17%  Similarity=0.471  Sum_probs=22.0

Q ss_pred             CchHhhHHHHHHHHhc------------CCCCCCCCCCCCC
Q 017402           26 SGHTFDRASIQRWLDS------------GHRTCPITKLPLP   54 (372)
Q Consensus        26 cgh~~c~~ci~~~~~~------------~~~~CP~c~~~~~   54 (372)
                      |....|..|+-+||..            ++-.||.||..|.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            3445688999999953            2347999999987

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.15  E-value=28  Score=35.93  Aligned_cols=135  Identities=14%  Similarity=0.106  Sum_probs=88.1

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA  181 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~  181 (372)
                      +..+...|+..|..++......-..+ ..+..+.+++-+.  +....+++.+..++-....      ...-...++.+..
T Consensus       308 N~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~lk--ekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e  378 (815)
T KOG1820|consen  308 NINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDRLK--EKKSELRDALLKALDAILN------STPLSKMSEAILE  378 (815)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHHhh--hccHHHHHHHHHHHHHHHh------cccHHHHHHHHHH
Confidence            56677788888888887543221111 2367788888888  6777777777666655443      1112456788899


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhh-ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATI-GDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      +++++++..+..+...+...-........- ....+.++.++....+.+. +++..|..++..+-.
T Consensus       379 ~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  379 ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK  443 (815)
T ss_pred             HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence            999999999988666555543322211111 1113678888888877777 899998888776543

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.11  E-value=5.3  Score=29.26  Aligned_cols=93  Identities=20%  Similarity=0.168  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHh-hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLT-ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA  182 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~  182 (372)
                      ++|.+|+..|..--...--.-..+. ..+.+..|++-+.  ..+....+.++..|..+..++.....+.+-|+...|-++
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFn--f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFN--FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKL   79 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHH
Confidence            6788888777533322221222232 2344444444444  456668899999999999998888888888988886666


Q ss_pred             HhcCChHHHHHHHHHH
Q 017402          183 LRFGSPDCRAIAATII  198 (372)
Q Consensus       183 L~~~~~~~~~~a~~~L  198 (372)
                      -..-++..+...-.++
T Consensus        80 r~~~~~~~~~~id~il   95 (98)
T PF14726_consen   80 RPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HhcCCHHHHHHHHHHH
Confidence            5445555554443333

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=81.76  E-value=14  Score=37.93  Aligned_cols=176  Identities=18%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC----------chhHHHH
Q 017402          186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP----------ENRKRVV  255 (372)
Q Consensus       186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----------~~~~~i~  255 (372)
                      |+.+.++.|...+..+...--.|..-.. ..+-..|+.+|++++.   -..|+.++.-+.++.          +.| .+.
T Consensus       786 gs~dls~~al~~l~Wv~KaLl~R~~~~s-~~ia~klld~Ls~~~~---g~~aa~~fsiim~D~~~~~~r~~~a~~r-iLy  860 (1030)
T KOG1967|consen  786 GSLDLSEIALTVLAWVTKALLLRNHPES-SEIAEKLLDLLSGPST---GSPAAKLFSIIMSDSNPLLKRKGHAEPR-ILY  860 (1030)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCccc-chHHHHHHHhcCCccc---cchHHHhhHhhhccChHHhhhccccchh-HHH
Confidence            4555566665555555322111111111 2466677788877543   333333333333222          121 122


Q ss_pred             hc----CchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          256 SC----GAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       256 ~~----g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                      ++    ..+|.|+....+.    +-.-+.+|+++-.+-..+.-+-..+...|.|++.+.-.+..++..+..++..+...+
T Consensus       861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~  940 (1030)
T KOG1967|consen  861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES  940 (1030)
T ss_pred             HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence            22    4677777777522    445667777777643333333334557888888888888888888888888776654


Q ss_pred             HHHHHHHHhcChhHHHHHHhhccc---HHHHHHHHHHHHHHhc
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDN---EKVRRNANNLIQTLSG  367 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~---~~v~~~a~~~L~~l~~  367 (372)
                      +....+=+. -++|.++.+-.+.+   -.||..|..+|..|.+
T Consensus       941 ~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~  982 (1030)
T KOG1967|consen  941 ETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTR  982 (1030)
T ss_pred             cccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence            433332222 27888988888754   5789999999988876

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=81.55  E-value=0.03  Score=37.65  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +..||.|.+.|..    .-|+.+|..|-.++..  ...||.|++++.
T Consensus         1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le   41 (70)
T PF07191_consen    1 ENTCPKCQQELEW----QGGHYHCEACQKDYKK--EAFCPDCGQPLE   41 (70)
T ss_dssp             --B-SSS-SBEEE----ETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred             CCcCCCCCCccEE----eCCEEECcccccccee--cccCCCcccHHH
Confidence            4689999986432    2367777777765332  347999998776

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.28  E-value=56  Score=35.87  Aligned_cols=200  Identities=15%  Similarity=0.107  Sum_probs=107.4

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRV  179 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~l  179 (372)
                      ....|..|+-.+..++...   ++.+.-  ...||.|.+.=.  +.+..++.....+=..|..++..-..-.-..+++.|
T Consensus       970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~y--DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen  970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQY--DPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred             hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhcc--CCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            3456667777777777633   233322  135666666655  566667766655555565553322111123456666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHH---HHHHHhhcC--CC-chhHH
Q 017402          180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEA---ATALYALTS--FP-ENRKR  253 (372)
Q Consensus       180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a---~~aL~~L~~--~~-~~~~~  253 (372)
                      +.-|.+.--.+|+.+|.||..|-...+.-+..-........+.+.+.+-.+ .+++.|   +.+|..|+.  .+ .+-..
T Consensus      1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            666666677789999999999987765544443323455555555555444 555544   445555542  11 11000


Q ss_pred             HHhcCchHHHHHHH-hhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh
Q 017402          254 VVSCGAVPILMRLA-DAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS  310 (372)
Q Consensus       254 i~~~g~v~~L~~ll-~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~  310 (372)
                        ...+++.++..| +.+        +.-++.++.-|++...+.-.-- .+..++.|......-.+
T Consensus      1124 --~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1124 --GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred             --HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccch
Confidence              011334444433 222        4558888888888544422111 13456666666554333

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=81.25  E-value=16  Score=26.71  Aligned_cols=75  Identities=9%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       289 ~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                      ..+....+.+..|++-....+...++.++..|..+..+ +.....+.+-|+...|-.+-.+-++..+....+++..
T Consensus        23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~   97 (98)
T PF14726_consen   23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ   97 (98)
T ss_pred             HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence            34444345566666666666667888999999999887 8888999999999998888777788888888777754

>PRK14707 hypothetical protein; Provisional

Probab=81.18  E-value=1.1e+02  Score=35.21  Aligned_cols=267  Identities=17%  Similarity=0.179  Sum_probs=146.6

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      |...|++.+...... +|+.-|.........-+..+. .--+..+++-+.+-.++.+.+..+..+...++.++..+..+ 
T Consensus       126 ~~n~~sk~~~~~~c~-~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-  202 (2710)
T PRK14707        126 FLNAFSKNLDSGRCE-RAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-  202 (2710)
T ss_pred             HHHHHhcCCCchHHH-HHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-
Confidence            445666665444444 444444433332221222221 12366677777654466777777777777787777655544 


Q ss_pred             ccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh-hcCCC
Q 017402          172 AEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA-LTSFP  248 (372)
Q Consensus       172 ~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~  248 (372)
                      ...+|..++.-++.  +++..+..+...-..++.....+..+-  ...+-..++.|..-.+..+-..|+.+|.. ++.+.
T Consensus       203 ~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~--~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~  280 (2710)
T PRK14707        203 DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELK--PQELGNALNALSKWADTPVCAAAASALAERLVDDP  280 (2710)
T ss_pred             chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCC--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH
Confidence            56677777777776  567777666666666665544444443  34566666666654332677777777764 55433


Q ss_pred             chhHHHHhcCchHHHHHHHh----hh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHH
Q 017402          249 ENRKRVVSCGAVPILMRLAD----AG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLS  321 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~----~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~  321 (372)
                      .- .+-...-.+...+.-|.    ..  .+.+..+...|..+++-+..+-.  -.+...+..++. .+..+...|+.+|.
T Consensus       281 ~l-~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~--~~~~~~LNalsKWpd~~~C~~Aa~~LA  357 (2710)
T PRK14707        281 GL-RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA--RGLSTALNALSKWPDNPVCAAAVSALA  357 (2710)
T ss_pred             HH-HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch--HHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence            33 33333333444444441    11  44555666667765555543332  345555566643 55555555555554


Q ss_pred             H-HhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhc
Q 017402          322 C-LCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSG  367 (372)
Q Consensus       322 ~-l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~  367 (372)
                      . ++. +++.++.+--.|+-..|=.+.+=. ++..+..|..+-..+.+
T Consensus       358 ~rl~~-d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~  404 (2710)
T PRK14707        358 ERLVA-DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVD  404 (2710)
T ss_pred             HHhcc-CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc
Confidence            4 554 488888877666555555555533 44444444444344443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=81.18  E-value=47  Score=31.62  Aligned_cols=182  Identities=15%  Similarity=0.097  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhcCC--ChhHHHHHHHHHhc-CCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccch
Q 017402          133 VSAVLNCLKIHSD--GFTLQEKALSLLLN-LSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       133 i~~L~~lL~~~~~--~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      .+.+.++|+..++  ..+-+..|+.-|.. ++.+...-..=.-...+..+++.|++ .+...+..|.++|..+..+...+
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            3444455553222  33445666664444 44432221110112345678888877 68888999999999998776544


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHH-HHhhcCCCchhHHHHhcCchHHHHHHH-hhhHHH---HHHHHHHHhC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATA-LYALTSFPENRKRVVSCGAVPILMRLA-DAGLER---AVEVLSILVK  283 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a-L~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~~e~---a~~~L~~L~~  283 (372)
                      ..=.. .-+|..+++.-.+..+ .+...|... +.-+++...-....       .+..++ ..+.+.   ++..+..++.
T Consensus       365 l~Dst-E~ai~K~Leaa~ds~~-~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~D~~~~~~~iKm~Tkl~e  435 (516)
T KOG2956|consen  365 LFDST-EIAICKVLEAAKDSQD-EVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTADEPRAVAVIKMLTKLFE  435 (516)
T ss_pred             hhchH-HHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcCcchHHHHHHHHHHHHHh
Confidence            33222 3577777777777666 566666554 44566654322211       122222 122222   3344444444


Q ss_pred             C--HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402          284 C--KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       284 ~--~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  325 (372)
                      .  .+.-..++  ....|.+++.-.+.+..+|..|+.+|..+..
T Consensus       436 ~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  436 RLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            2  11112222  3478888888888889999999999888764

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.11  E-value=0.97  Score=39.17  Aligned_cols=36  Identities=14%  Similarity=0.271  Sum_probs=29.3

Q ss_pred             CCCccccCCcccCCCceecCC----chHhhHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILSS----GHTFDRASIQRWLDS   41 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~c----gh~~c~~ci~~~~~~   41 (372)
                      ...++|.+|.+.+.|--...|    .|.||..|-.+.++.
T Consensus       266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~  305 (352)
T KOG3579|consen  266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ  305 (352)
T ss_pred             CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence            355999999999999976655    699999998777753

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=80.94  E-value=39  Score=29.77  Aligned_cols=185  Identities=15%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcC---CchHHHHHHHHHHHhhcCCCchh
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNG---KLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                      +..+.+++.....+.+--+.-++.-+..+...-..+....+ ....+..++...   .....+.-++++++|+..++.++
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            45555555555555566677777777766655444433222 345555555443   23478888999999999999999


Q ss_pred             HHHHhc-C-chHHHHHHH-hh----h---HHHHHHHHHHHhCCHhHHHHHHhc--cchHHHHHHHHhc--CChhHHHhHH
Q 017402          252 KRVVSC-G-AVPILMRLA-DA----G---LERAVEVLSILVKCKEGREEMMRV--SGCVGVFVKMLKT--GSSRAVQCSL  317 (372)
Q Consensus       252 ~~i~~~-g-~v~~L~~ll-~~----~---~e~a~~~L~~L~~~~~~~~~i~~~--~g~i~~L~~ll~~--~~~~~~~~a~  317 (372)
                      ..+.+. + .+-..+..+ .+    .   +-.+..++.|++..-..... -..  ...+..+.+.+..  .+++..-.++
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            888765 3 233332222 21    1   33356667777663211110 000  0134445553322  5778888999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHH
Q 017402          318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNL  361 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~  361 (372)
                      .+|+++...++.........|+...+..... ...+++++-+..+
T Consensus       224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            9999999776666555555676666655554 3577888777654

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=80.59  E-value=0.98  Score=34.80  Aligned_cols=42  Identities=19%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             CccccCCcccCCC--cee-cCCc------hHhhHHHHHHHHhcCCCCCCCCC
Q 017402            8 DFKCPISLEIMSD--PVI-LSSG------HTFDRASIQRWLDSGHRTCPITK   50 (372)
Q Consensus         8 ~~~C~ic~~~~~~--Pv~-~~cg------h~~c~~ci~~~~~~~~~~CP~c~   50 (372)
                      ...|.||.+...+  -|+ ++||      |.||..|+.+|-.+ ...-|.=|
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR   76 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNR   76 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCccc
Confidence            6779999998776  554 5665      56999999999643 34455543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PLN02400 cellulose synthase

Probab=80.44  E-value=0.73  Score=47.90  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|.||.+-.     -+|.+.  .|+-..||.|++-=.++++..||.|++.+.
T Consensus        37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk   89 (1085)
T PLN02400         37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR   89 (1085)
T ss_pred             ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence            3799999853     255543  488889999997666778889999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		6e-18
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		6e-06
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		6e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		8e-06
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		2e-05
2ecv_A	85	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
          + +FP+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++  L     L P
Sbjct: 2  SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTP 60
Query: 62 NHALRSLIS 70
          N+ L+SLI+
Sbjct: 61 NYVLKSLIA 69

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 6  PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
          PD     IS E+M +P I  SG T+DR  I+  L       P+T+ PL  Q  LIPN A+
Sbjct: 3  PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL-TQEQLIPNLAM 61
Query: 66 RSLISNF 72
          + +I  F
Sbjct: 62 KEVIDAF 68

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
          + PD     IS E+M++P I  SG T+DR  I+  L       P+T+ PL  Q  LIPN 
Sbjct: 9  EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL-TQDQLIPNL 67
Query: 64 ALRSLISNFTR 74
          A++ +I  F +
Sbjct: 68 AMKEVIDAFIQ 78

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 6   PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
           PD     IS E+M +P I  SG T+DR  I+  L       P+T+ PL  Q  LIPN A+
Sbjct: 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAM 264
Query: 66  RSLISNF 72
           + +I  F
Sbjct: 265 KEVIDAF 271

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 4   QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
           + PD     IS E+M +P I  SG T+DR  I+  L       P+T+ PL  Q  LIPN 
Sbjct: 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT-QDQLIPNL 160
Query: 64  ALRSLISNF 72
           A++ +I  F
Sbjct: 161 AMKEVIDAF 169

>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Tripartite Motif-Containing Protein 5 Length = 85

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 7  DDFKCPISLEIMSDPVILSSGHTFDRASI-----QRWLDSGHRTCPITKLPLPDQPSLI- 60
          ++  CPI LE+++ P+ L  GH+F +A +     +  LD G  +CP+ ++    QP  I 
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY--QPENIR 75
Query: 61 PNHALRSLI 69
          PN  + +++
Sbjct: 76 PNRHVANIV 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	9e-38
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	9e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-33
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-30
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	6e-30
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	6e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-04
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-26
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-26
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-20
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-18
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	1e-21
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-21
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-20
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-21
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-20
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	6e-19
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-17
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-15
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	8e-14
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	5e-13
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-10
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	8e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-11
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	7e-11
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	8e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-11
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-10
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-10
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-09
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-09
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	6e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-08
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	7e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	9e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-07
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	8e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-06
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	6e-06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	8e-06
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	5e-05
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	8e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-04
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-04
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	4e-04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	5e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  129 bits (327), Expect = 9e-38
 Identities = 37/71 (52%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
          + +FP+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++  L     L P
Sbjct: 2  SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA-GLTP 60

Query: 62 NHALRSLISNF 72
          N+ L+SLI+ +
Sbjct: 61 NYVLKSLIALW 71

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  127 bits (321), Expect = 9e-36
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 3   TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
            + PD     IS E+M +P I  SG T+DR  I+  L       P+T+ PL     LIPN
Sbjct: 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD-QLIPN 159

Query: 63  HALRSLISNF 72
            A++ +I  F
Sbjct: 160 LAMKEVIDAF 169

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  129 bits (326), Expect = 3e-33
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 16/288 (5%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           L  +L  +        ++   + +LSK++++    +     VSA++  ++ +++      
Sbjct: 19  LTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ-NTNDVETAR 75

Query: 152 KALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNKAT 210
                L NLS   +  + +   G +  +V  L          A T + +L +  E  K  
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALT-SFPENRKRVVSCGAVPILMRLADA 269
           +      +  +V+LL     ++        L  L     E++  +++ G    L+ +   
Sbjct: 136 VRLAG-GLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193

Query: 270 G-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
                 L     VL +L  C   +  ++  +G +      L   S R VQ  L+TL  L 
Sbjct: 194 YTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252

Query: 325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
             + +  G    EG+L   + LL  D+  V   A  ++  L+ N    
Sbjct: 253 DAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  114 bits (286), Expect = 7e-28
 Identities = 62/338 (18%), Positives = 110/338 (32%), Gaps = 44/338 (13%)

Query: 68  LISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKL 127
           ++   +     KP +  A      L   LT  S         L  L  LS    A+ ++ 
Sbjct: 206 VLKVLSVCSSNKPAIVEAGGMQ-ALGLHLTDPSQ--RLVQNCLWTLRNLS---DAATKQE 259

Query: 128 TESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NKVGLVAEGAVSRVVAALRFG 186
              G +  ++  L   SD   +   A  +L NL+ ++  NK+ +   G +  +V  +   
Sbjct: 260 GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317

Query: 187 SP--DCRAIAATIITSLAV----VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240
               D    A   +  L       E+ +  +  + Y +  +V LL         K     
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPPSHWPLIKATVGL 376

Query: 241 LYALTSFPENRKRVVSCGAVPILMRLADAG--------------------------LERA 274
           +  L   P N   +   GA+P L++L                              +E  
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436

Query: 275 VEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS 334
              L IL +    R  ++R    + +FV++L +      + +   L  L    +E     
Sbjct: 437 TGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAI 494

Query: 335 RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
             EG       LL   NE V   A  ++  +S +    
Sbjct: 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  109 bits (273), Expect = 3e-26
 Identities = 43/217 (19%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 159 NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAI 218
           NL    D+    +A  A+  +   L          AA ++  L+  E ++  I   P  +
Sbjct: 1   NLINYQDDAE--LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 58

Query: 219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERA 274
           +A+V  +QN   +   +  A  L+ L+   E    +   G +P L+++  +     L  A
Sbjct: 59  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 118

Query: 275 VEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS 334
           +  L  L+  +EG +  +R++G +   V +L   + + +  +   L  L   +QE     
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 335 RKEGVLDICMGLLEDDN-EKVRRNANNLIQTLSGNPS 370
              G     + ++     EK+    + +++ LS   S
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 29/258 (11%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSAS---RRKLTESGAVSAVLNCLKIHSDGFT 148
           L+  +       +    ++  L  L+ R   +   +  +     +  V+  L      + 
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH-PPSHWP 368

Query: 149 LQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITS-------- 200
           L +  + L+ NL+L   N   L  +GA+ R+V  L     D +   +   T         
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428

Query: 201 --------------LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246
                         LA    N+  I      I   V LL +      ++ AA  L  L  
Sbjct: 429 MEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPI-ENIQRVAAGVLCELAQ 486

Query: 247 FPENRKRVVSCGAVPILMRLADAGLERAVE-VLSILVKCKEGREEMMRVSGCVGVFVKML 305
             E  + + + GA   L  L  +  E       ++L +  E + +  +    V +   + 
Sbjct: 487 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546

Query: 306 KTGSSRAVQCSLFTLSCL 323
           +T      + +   L   
Sbjct: 547 RTEPMAWNETADLGLDIG 564

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 10/171 (5%)

Query: 74  RTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAV 133
                  Q   +    Q            +E    +L  L     RD  +R  +     +
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA----RDVHNRIVIRGLNTI 459

Query: 134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAI 193
              +  L  +S    +Q  A  +L  L+ D +    + AEGA + +   L   +      
Sbjct: 460 PLFVQLL--YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517

Query: 194 AATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244
           AA ++  ++    +K        ++    SL +    +   + A   L   
Sbjct: 518 AAAVLFRMS---EDKPQDYKKRLSVELTSSLFRTEP-MAWNETADLGLDIG 564

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  124 bits (314), Expect = 7e-32
 Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 16/290 (5%)

Query: 90  QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTL 149
             L  +L  +        ++   + +LSK++++    +     VSA++  ++ +++    
Sbjct: 20  PELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ-NTNDVET 76

Query: 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNK 208
                  L NLS   +  + +   G +  +V  L          A T + +L +  E  K
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT-SFPENRKRVVSCGAVPILMRLA 267
             +      +  +V+LL     ++        L  L     E++  +++ G    L+ + 
Sbjct: 137 MAVRLAG-GLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 268 DAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC 322
                   L     VL +L  C   +  ++  +G +      L   S R VQ  L+TL  
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 323 LCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
           L   + +  G    EG+L   + LL  D+  V   A  ++  L+ N    
Sbjct: 254 LSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  109 bits (274), Expect = 2e-26
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 7/219 (3%)

Query: 157 LLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY 216
           ++NL    D+    +A  A+  +   L          AA ++  L+  E ++  I   P 
Sbjct: 2   VVNLINYQDDAE--LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 59

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LE 272
            ++A+V  +QN   +   +  A  L+ L+   E    +   G +P L+++  +     L 
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 119

Query: 273 RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG 332
            A+  L  L+  +EG +  +R++G +   V +L   + + +  +   L  L   +QE   
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 333 DSRKEGVLDICMGLLEDDN-EKVRRNANNLIQTLSGNPS 370
                G     + ++     EK+    + +++ LS   S
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  105 bits (264), Expect = 4e-25
 Identities = 62/332 (18%), Positives = 109/332 (32%), Gaps = 44/332 (13%)

Query: 68  LISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKL 127
           ++   +     KP +  A      L   LT  S         L  L  LS    A+ ++ 
Sbjct: 209 VLKVLSVCSSNKPAIVEAGGMQ-ALGLHLTDPSQ--RLVQNCLWTLRNLS---DAATKQE 262

Query: 128 TESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NKVGLVAEGAVSRVVAALRFG 186
              G +  ++  L   SD   +   A  +L NL+ ++  NK+ +   G +  +V  +   
Sbjct: 263 GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320

Query: 187 SP--DCRAIAATIITSLAV----VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240
               D    A   +  L       E+ +  +  + Y +  +V LL         K     
Sbjct: 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPPSHWPLIKATVGL 379

Query: 241 LYALTSFPENRKRVVSCGAVPILMRLADAG--------------------------LERA 274
           +  L   P N   +   GA+P L++L                              +E  
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439

Query: 275 VEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS 334
              L IL +    R  ++R    + +FV++L +      + +   L  L    +E     
Sbjct: 440 TGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAI 497

Query: 335 RKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366
             EG       LL   NE V   A  ++  +S
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  125 bits (316), Expect = 1e-31
 Identities = 54/280 (19%), Positives = 110/280 (39%), Gaps = 10/280 (3%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           ++  + + ++ +E+   +   L  LS         + +SG + A++N L   S   ++  
Sbjct: 197 IVRTMQN-TNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLG--SPVDSVLF 252

Query: 152 KALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKA 209
            A++ L NL L  +     V   G + ++VA L   +    AI    +  LA   + +K 
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312

Query: 210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA 269
            I        ALV++++     +     +  L  L+    N+  +V  G +  L      
Sbjct: 313 IILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371

Query: 270 GLERAV-EVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ 328
             +R V   L  L    +   +   + G +G  V++L +     V C+   LS L C + 
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

Query: 329 EICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQTLS 366
           +      + G ++  +  +    D E +   A   ++ L+
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  113 bits (285), Expect = 8e-28
 Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 7/281 (2%)

Query: 97  TSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSL 156
            S +    + ++    +T+  +  +A   +  + G           H        +   +
Sbjct: 71  QSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQM 130

Query: 157 LLNLSLDDDNKV--GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDY 214
           L +  ++  N      +A  A+  +   L          AA ++  L+  E ++  I   
Sbjct: 131 LKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190

Query: 215 PYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG---- 270
           P  ++A+V  +QN   +   +  +  L+ L+   E    +   G +P L+ +  +     
Sbjct: 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSV 250

Query: 271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEI 330
           L  A+  L  L+  +EG +  +R++G +   V +L   + + +  +   L  L   +QE 
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310

Query: 331 CGDSRKEGVLDICMGLLEDDN-EKVRRNANNLIQTLSGNPS 370
                  G     + ++     EK+    + +++ LS   S
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  109 bits (274), Expect = 2e-26
 Identities = 42/289 (14%), Positives = 100/289 (34%), Gaps = 12/289 (4%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150
                ++  + ++   E    L        +        + A+  +   L    +   + 
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN--DEDQVVV 167

Query: 151 EKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGS-PDCRAIAATIITSLAVVEVNK 208
            KA  ++  LS  + ++  ++     VS +V  ++  +  +     +  + +L+      
Sbjct: 168 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR-VVSCGAVPILMRLA 267
             I      I ALV++L +         A T L+ L    E  K  V   G +  ++ L 
Sbjct: 228 LAIFKSG-GIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 285

Query: 268 DAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323
           +      L    + L IL    +  + ++  SG     V +++T +   +  +   +  +
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345

Query: 324 CCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
                       + G +      L D ++++ +N    ++ LS   + Q
Sbjct: 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  105 bits (263), Expect = 6e-25
 Identities = 62/342 (18%), Positives = 110/342 (32%), Gaps = 44/342 (12%)

Query: 64  ALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSAS 123
               ++   +     KP +  A      L   LT  S         L  L  LS    A+
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHLTDPSQ--RLVQNCLWTLRNLS---DAA 391

Query: 124 RRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NKVGLVAEGAVSRVVAA 182
            ++    G +  ++  L   SD   +   A  +L NL+ ++  NK+ +   G +  +V  
Sbjct: 392 TKQEGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449

Query: 183 LRFGS--PDCRAIAATIITSLAV----VEVNKATIGDYPYAINALVSLLQNGKLIREKKE 236
           +       D    A   +  L       E+ +  +  + Y +  +V LL         K 
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH-YGLPVVVKLLHPPSHWPLIKA 508

Query: 237 AATALYALTSFPENRKRVVSCGAVPILMRLADAG-------------------------- 270
               +  L   P N   +   GA+P L++L                              
Sbjct: 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568

Query: 271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEI 330
           +E     L IL +    R  ++R    + +FV++L +      + +   L  L    +E 
Sbjct: 569 VEACTGALHILARDIHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEA 626

Query: 331 CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
                 EG       LL   NE V   A  ++  +S +    
Sbjct: 627 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 119 RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSR 178
           RD  +R  +     +   +  L  +S    +Q  A  +L  L+ D +    + AEGA + 
Sbjct: 581 RDIHNRIVIRGLNTIPLFVQLL--YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638

Query: 179 VVAALRFGSPDCRAIAATIITSLAV--VEVNKATIGDYPYAINALVSLLQNGKLIREKKE 236
           +   L   +      AA ++  ++    +  K  +         L S L   + +   + 
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL------SVELTSSLFRTEPMTWNET 692

Query: 237 AATAL 241
               L
Sbjct: 693 GDLGL 697

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  118 bits (297), Expect = 2e-30
 Identities = 64/337 (18%), Positives = 132/337 (39%), Gaps = 32/337 (9%)

Query: 63  HALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA 122
           H L  L              E   P      + + +          ++  L KLS  D  
Sbjct: 8   HMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVE--HQICPAVCVLMKLSF-DEE 64

Query: 123 SRRKLTESGAVSAVLNCLKIHSDGF---------TLQEKALSLLLNLSL-DDDNKVGLVA 172
            R  + E G + A+   L++  + +         TL+  A   L NL+  D  NK  L +
Sbjct: 65  HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124

Query: 173 -EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGK 229
            +G +  +VA L+  S D + + A+++ +L+      +K T+ +   ++ AL+      K
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVK 183

Query: 230 LIREKKEAATALYALTSF-PENRKRVVS-CGAVPILMRL----ADAGLERAVE------- 276
                K   +AL+ L++   EN+  + +  GA+  L+      +       +E       
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 277 -VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
            V S++   ++ R+ ++R + C+   ++ LK+ S   V  +  TL  L   + +      
Sbjct: 244 NVSSLIATNEDHRQ-ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
             G + +   L+   ++ +   +   ++ L  N   +
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/184 (14%), Positives = 72/184 (39%), Gaps = 15/184 (8%)

Query: 90  QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKL-TESGAVSAVLNCL--KIHSDG 146
           + L+           +    L+ L  LS   + ++  +    GA++ ++  L  +  ++ 
Sbjct: 173 KALMECALEVKKE-STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231

Query: 147 FTLQEKALSLLLNLSL----DDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLA 202
             + E    +L N+S     ++D++  L     +  ++  L+  S    + A   + +L+
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

Query: 203 VV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR----VVSC 257
                ++  + D   A++ L +L+ +         +A AL  L +    + +    +   
Sbjct: 292 ARNPKDQEALWDMG-AVSMLKNLIHSKHK-MIAMGSAAALRNLMANRPAKYKDANIMSPG 349

Query: 258 GAVP 261
            ++P
Sbjct: 350 SSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 11/156 (7%)

Query: 64  ALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSP-----LESKLESLTQLTKLSK 118
           AL +L ++ T     K  +   +     L+  LT +S       +ES    L  ++ L  
Sbjct: 194 ALWNLSAHCTEN---KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250

Query: 119 RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL-DDDNKVGLVAEGAVS 177
            +   R+ L E+  +  +L  LK HS   T+   A   L NLS  +  ++  L   GAVS
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSL--TIVSNACGTLWNLSARNPKDQEALWDMGAVS 308

Query: 178 RVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD 213
            +   +          +A  + +L      K    +
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDAN 344

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  115 bits (290), Expect = 3e-30
 Identities = 44/233 (18%), Positives = 104/233 (44%), Gaps = 11/233 (4%)

Query: 99  KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL 158
            S  ++ +L +  + +++    +   + + ++GA+ A++  L   S    + ++AL  L 
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALS 79

Query: 159 NLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPY 216
           N++   + ++  V + GA+  +V  L   +      A   ++++A         + D   
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG- 138

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG----L 271
           A+ ALV LL +    +  +EA  AL  + S   E  + V+  GA+P L++L  +     L
Sbjct: 139 ALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
           + A+  LS +      +++ ++ +G +    ++    + +  + +   L  L 
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 40/157 (25%)

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAGLERAV 275
            +  +   L +   ++E+  A      + S   E  + V+  GA+P L            
Sbjct: 13  ELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL------------ 59

Query: 276 EVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
                                     V++L + + + +Q +L+ LS +     E      
Sbjct: 60  --------------------------VQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93

Query: 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
             G L   + LL   NE++ + A   +  ++   + Q
Sbjct: 94  DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  109 bits (274), Expect = 6e-30
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 3  TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
          +  PD+F+ P+   +M+DPV L SG   DR+ I R L +   T P  +  L +   L P 
Sbjct: 9  SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTES-MLEPV 66

Query: 63 HALRSLISNF 72
            L+  I  +
Sbjct: 67 PELKEQIQAW 76

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  109 bits (275), Expect = 6e-30
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 3  TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
          +  PD+F+ P+   +M+DPV L SG   DR+ I R L +   T P  +  L +   L P 
Sbjct: 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTES-MLEPV 81

Query: 63 HALRSLISNF 72
            L+  I  +
Sbjct: 82 PELKEQIQAW 91

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  115 bits (289), Expect = 8e-29
 Identities = 63/333 (18%), Positives = 130/333 (39%), Gaps = 32/333 (9%)

Query: 63  HALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA 122
             L  L              E   P      + +   +        ++  L KLS  D  
Sbjct: 124 RVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM--PAPVEHQICPAVCVLMKLSF-DEE 180

Query: 123 SRRKLTESGAVSAVLNCLKIHSDGF---------TLQEKALSLLLNLSL-DDDNKVGLVA 172
            R  + E G + A+   L++  + +         TL+  A   L NL+  D  NK  L +
Sbjct: 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240

Query: 173 -EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGK 229
            +G +  +VA L+  S D + + A+++ +L+      +K T+ +   ++ AL+      K
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVK 299

Query: 230 LIREKKEAATALYALTSF-PENRKRVVS-CGAVPILMRL----ADAGLERAVE------- 276
                K   +AL+ L++   EN+  + +  GA+  L+      +       +E       
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359

Query: 277 -VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
            V S++   ++ R+ ++R + C+   ++ LK+ S   V  +  TL  L   + +      
Sbjct: 360 NVSSLIATNEDHRQ-ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 418

Query: 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368
             G + +   L+   ++ +   +   ++ L  N
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 28/164 (17%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 99  KSSPLESKLESLTQ-LTKLSKRDSASRRKLT-ESGAVSAVLNCLKI--HSDGFTLQEKAL 154
                ES L+S+   L  LS   + ++  +    GA++ ++  L     ++   + E   
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 155 SLLLNLS----LDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKA 209
            +L N+S     ++D++  L     +  ++  L+  S    + A   + +L+     ++ 
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415

Query: 210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR 253
            + D   A++ L +L+ +         +A AL  L +    + +
Sbjct: 416 ALWD-MGAVSMLKNLIHSKHK-MIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 42/301 (13%), Positives = 86/301 (28%), Gaps = 54/301 (17%)

Query: 121 SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180
            +  R  +  G    ++  L +   G   ++     LL +S   D+ + +   G +  ++
Sbjct: 18  GSHMRLTSHLGTKVEMVYSL-LSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLI 76

Query: 181 AALRFGSPDC------------RAIAATIITSLAVVEVNK-------------ATIGDYP 215
             L     D             RA A+  + ++   + +                I  Y 
Sbjct: 77  QLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYC 136

Query: 216 YAINALVSLLQNG----------KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMR 265
                     + G           +  +   A   L  L+   E+R  +   G +  +  
Sbjct: 137 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 196

Query: 266 LADAG---------------LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTGS 309
           L                      A   L+ L       +  +  + GC+   V  LK+ S
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 310 SRAVQCSLFTLSCLCCCSQEICGDS-RKEGVLDICMGLLED-DNEKVRRNANNLIQTLSG 367
               Q     L  L   +      + R+ G +   M    +   E   ++  + +  LS 
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316

Query: 368 N 368
           +
Sbjct: 317 H 317

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 64  ALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSP-----LESKLESLTQLTKLSK 118
           AL +L ++       K  +   +     L+  LT +S       +ES    L  ++ L  
Sbjct: 310 ALWNLSAH---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366

Query: 119 RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL-DDDNKVGLVAEGAVS 177
            +   R+ L E+  +  +L  LK HS   T+   A   L NLS  +  ++  L   GAVS
Sbjct: 367 TNEDHRQILRENNCLQTLLQHLKSHSL--TIVSNACGTLWNLSARNPKDQEALWDMGAVS 424

Query: 178 RVVAALRFGSPDCRAIAATIITSLAVVEVNK 208
            +   +          +A  + +L      K
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVE 276
            + +L+S+L       +K + +  L A++S  ++   +   G +P+L++L    L    +
Sbjct: 33  MVYSLLSMLGT----HDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQL----LHGNDK 84

Query: 277 VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC----CSQEICG 332
              +L   +  +E   R S  +   +        +  +  +  L  L      C      
Sbjct: 85  DSVLLGNSRGSKEARARASAALHNIIHSQP--DDKRGRREIRVLHLLEQIRAYCETCWEW 142

Query: 333 DSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370
               E  +D     +    E     A  ++  LS +  
Sbjct: 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 180

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  100 bits (251), Expect = 2e-26
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 6  PDDFKCPISLEIMSDPVILSSGH-TFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
           D+F  PI   +M DPV+L S   T DR++I R L S   T P  + PL     + PN  
Sbjct: 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMD-QIRPNTE 77

Query: 65 LRSLISNF 72
          L+  I  +
Sbjct: 78 LKEKIQRW 85

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  107 bits (269), Expect = 4e-26
 Identities = 43/289 (14%), Positives = 103/289 (35%), Gaps = 11/289 (3%)

Query: 91  TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150
             +  L  +      + ES   LT ++  +S   R + ++GAV   +  L   S+   +Q
Sbjct: 68  RFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS--SEFEDVQ 124

Query: 151 EKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNK 208
           E+A+  L N++ D       V +   +  ++      +       A   +++L   +   
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLA 267
                    +N L  LL          +A  AL  L+    +  + V+  G    L+ L 
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243

Query: 268 DAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323
                  +  A+  +  +V   + + +++     +   + +L +      + + +T+S +
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303

Query: 324 CCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
              ++          +    + +L+    + R+ A   I   +   S +
Sbjct: 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE 352

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =   99 bits (249), Expect = 2e-23
 Identities = 47/289 (16%), Positives = 99/289 (34%), Gaps = 13/289 (4%)

Query: 79  KPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSAS--RRKLTESGAVSAV 136
             ++         +I ++ SKS   E +L +  +  KL  ++        ++  G V+  
Sbjct: 12  NMEMAPGGVITSDMIEMIFSKSP--EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF 69

Query: 137 LNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAA 195
           +  LK   +   LQ ++  +L N++  +  +  +V + GAV   +  L     D +  A 
Sbjct: 70  VEFLKRKENCT-LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128

Query: 196 TIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRV 254
             + ++A    + +  + D    +  L+ L      +   + A  AL  L          
Sbjct: 129 WALGNIAGDSTMCRDYVLDCN-ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 255 VS-CGAVPILMRLADAGLER----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS 309
                 + +L  L           A   LS L      + + +  +G     V++L    
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247

Query: 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNA 358
            + V  +L  +  +                L   + LL    E +++ A
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 91.9 bits (228), Expect = 1e-20
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 24/292 (8%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           L+ + +   + L     ++  L+ L +  S        S  ++ +   L        +  
Sbjct: 154 LLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL--FVSDTDVLA 210

Query: 152 KALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKA 209
            A   L  LS   ++K+  V + G   R+V  L        + A   + ++    ++   
Sbjct: 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270

Query: 210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLAD 268
            I +   A+ +L+ LL + K    KKEA   +  +T+      + V+     P L+ +  
Sbjct: 271 VILNCS-ALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328

Query: 269 AG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323
                   E A  + +        + + +   GC+     +L    S+ VQ +L  L  +
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

Query: 324 CCCSQEICGDSR-----------KEGVLDICMGLLEDDNEKVRRNANNLIQT 364
               ++    +            +   LD    L   +N+++ + A +LI+ 
Sbjct: 389 LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  107 bits (267), Expect = 2e-25
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 23/282 (8%)

Query: 98  SKSSPLESKLESLTQLTKLSKR-------------DSASRRKLTESGAVSAVLNCLKIHS 144
             +   +  L  + +L K +K+              +     L   G  +A+    K  S
Sbjct: 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508

Query: 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV 204
                QE    +L  +    + +  +V EG V  ++     G+   +  A   +  + + 
Sbjct: 509 HN--SQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT 566

Query: 205 EVNKATIGDYPY--AINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVP 261
              + +         I  L++LLQ      E  E+  AL  L S     R+R++    V 
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVS 626

Query: 262 ILMRLADAGLER----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317
            +              A + L  LV  ++  +     +  V     + +           
Sbjct: 627 KIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686

Query: 318 FTLSCLCCCSQEICGDS-RKEGVLDICMGLLEDDNEKVRRNA 358
             L+ +   S + C         LDI   L+ + +  V+   
Sbjct: 687 GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 9/221 (4%)

Query: 69  ISNFTRTPLPKPQLEHANPNP--QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRK 126
           ++    T  P+            + L+++L    + LE   ESL  LT L+  + + R++
Sbjct: 560 LARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE-NFESLMALTNLASMNESVRQR 618

Query: 127 LTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRF 185
           + +   VS +   L    D   L   A   L NL + +D           V  +      
Sbjct: 619 IIKEQGVSKIEYYL--MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676

Query: 186 GSPDCRAIAATIITSLAVVEVN-KATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244
              +     A  +  +  V V     I      ++ L +L+ N      +      +  +
Sbjct: 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHRGIVIILNM 735

Query: 245 TSF-PENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKC 284
            +   E  K++     + +L  L     +   +   +  +C
Sbjct: 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  100 bits (249), Expect = 2e-23
 Identities = 53/293 (18%), Positives = 117/293 (39%), Gaps = 15/293 (5%)

Query: 91  TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150
             +S L  K+     + ES   LT ++   S   + + + GA+ A ++ L        + 
Sbjct: 104 KFVSFL-GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HIS 160

Query: 151 EKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDC-----RAIAATIITSLAVV 204
           E+A+  L N++ D    +  ++  GA+  ++A L                   +++L   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 205 EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT-SFPENRKRVVSCGAVPIL 263
           +     +      +  LV LL +        ++  A+  LT    E  + VV  G VP L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 264 MRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319
           ++L  A     +  A+  +  +V   + + + +  +G + VF  +L    +   + + +T
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339

Query: 320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
           +S +    Q+        G++   +G+L   + K ++ A   I   +   +++
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 46/289 (15%), Positives = 106/289 (36%), Gaps = 18/289 (6%)

Query: 91  TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150
            L++V    +            L+ L +  + +         +  ++  L  +     + 
Sbjct: 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE--VL 249

Query: 151 EKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNK 208
             +   +  L+   + ++ +V + G V ++V  L          A   I ++    +   
Sbjct: 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 309

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLA 267
             + D   A+    SLL N K    +KEA   +  +T+   +  ++VV+ G VP L+ + 
Sbjct: 310 QKVIDAG-ALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367

Query: 268 DAG----LERAVEVLS-ILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC 322
                   + A   ++         +   +   G +   + +L    ++ +Q  L  +S 
Sbjct: 368 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427

Query: 323 LCCCSQEICGDSR------KEGVLDICMGLLEDDNEKVRRNANNLIQTL 365
           +   ++++    +      + G LD    L   +NE V + + NLI+  
Sbjct: 428 IFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 85.8 bits (212), Expect = 2e-18
 Identities = 51/295 (17%), Positives = 107/295 (36%), Gaps = 16/295 (5%)

Query: 90  QTLISVLTSKSSPLESKLESLTQLTKL-SKRDSASRRKLTESGAVSAVLNCLKIHSDGFT 148
           + ++  + S +   ES+L++     KL S+        +  +G +   ++ L   +D   
Sbjct: 60  EDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-KTDCSP 116

Query: 149 LQEKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAV-VEV 206
           +Q ++   L N++     +   V + GA+   ++ L          A   + ++A     
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176

Query: 207 NKATIGDYPYAINALVSLLQNGKLIREKKEA-ATALYALTSFPENRKR----VVSCGAVP 261
            +  +  +  AI+ L++LL    L            + L++   N+            +P
Sbjct: 177 FRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235

Query: 262 ILMRLA----DAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317
            L+RL        L  +   +S L      R EM+   G V   VK+L       V  +L
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295

Query: 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
             +  +   + E        G L +   LL +    +++ A   +  ++     Q
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 350

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 96.0 bits (238), Expect = 1e-21
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 3   TQFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
              PD+F  P+   IM DPVIL +S    DR++I+  L S   T P  ++PL  +  + P
Sbjct: 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLE-DVTP 943

Query: 62  NHALRSLISNF 72
           N  LR  I  F
Sbjct: 944 NEELRQKILCF 954

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 91  TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150
            ++  L S     +    +L +L++++   +   + + ++GA+ A++  L    +   + 
Sbjct: 16  QMVQQLNSPD--QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNE-QIL 71

Query: 151 EKALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNK 208
           ++AL  L N++   + ++  V + GA+  +V  L   +      A   ++++A       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLA 267
             + D   A+ ALV LL +    +  +EA  AL  + S   E ++ V   GA+  L +L 
Sbjct: 132 QAVIDAG-ALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

Query: 268 DAG----LERAVEVLSILVK 283
                   + A E L  L  
Sbjct: 190 SHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 39/211 (18%), Positives = 85/211 (40%), Gaps = 11/211 (5%)

Query: 121 SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE-GAVSRV 179
             S         +  ++  L  +S      + AL  L  ++   + ++  V + GA+  +
Sbjct: 2   RGSHHHHHHGSELPQMVQQL--NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPAL 59

Query: 180 VAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAA 238
           V  L   +      A   ++++A         + D   A+ ALV LL +    +  +EA 
Sbjct: 60  VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQLLSSPN-EQILQEAL 117

Query: 239 TALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMR 293
            AL  + S   E  + V+  GA+P L++L  +     L+ A+  LS +      +++ ++
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK 177

Query: 294 VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
            +G +    ++    + +  + +   L  L 
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKM 304
            +         +P +++  ++     L+ A+  LS +      + + +  +G +   V++
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 305 LKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364
           L + + + +Q +L+ LS +     E        G L   + LL   NE++ + A   +  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 365 LSGNPSMQ 372
           ++   + Q
Sbjct: 123 IASGGNEQ 130

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 93.9 bits (233), Expect = 4e-21
 Identities = 47/282 (16%), Positives = 103/282 (36%), Gaps = 11/282 (3%)

Query: 99  KSSPLESKLESLTQLTK-LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLL 157
            S  ++ +L +  +  + LS+        + ++G V  ++  ++  +    LQ +A   L
Sbjct: 97  NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWAL 155

Query: 158 LNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYP 215
            N++     +  +V +  AV   +  L  GS + +  A   + ++A      +  +    
Sbjct: 156 TNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC- 214

Query: 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR-VVSCGAVPILMRLADAG---- 270
            A+  ++ L  + K     + A   L  L    + +    V   A+P L +L  +     
Sbjct: 215 NAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET 273

Query: 271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEI 330
           L  A   +S L    +   + +         V++L   S+     +L  +  +   +   
Sbjct: 274 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333

Query: 331 CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
                  GVL     LL    E +++ A   I  ++   + Q
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 81.2 bits (200), Expect = 6e-17
 Identities = 48/294 (16%), Positives = 102/294 (34%), Gaps = 25/294 (8%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           ++ +  S    L     +   L+ L +           S A+  +   +  +S       
Sbjct: 220 ILGLFNSNKPSL--IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI--YSMDTETLV 275

Query: 152 KALSLLLNLSLDDDNKVGLVAE-GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT 210
            A   +  LS      +  V +     R+V  L   S   +  A   + ++      +  
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADA 269
           +      + AL  LL + K    KKEA   +  +T+   E  + V+    +P L++L + 
Sbjct: 336 VVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394

Query: 270 G----LERAVEVLSILVKCKEGREEMMRV---SGCVGVFVKMLKTGSSRAVQCSLFTLSC 322
                 + A   +S        R +++R     GC+     +L+   +R ++ +L  L  
Sbjct: 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454

Query: 323 LCCCSQEICGDSR-----------KEGVLDICMGLLEDDNEKVRRNANNLIQTL 365
           +    +                  K G ++      +++N+K+   A  +I+T 
Sbjct: 455 ILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 88.4 bits (219), Expect = 4e-20
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 6   PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPL-PDQPSLIPNHA 64
           PD     IS E+M +P I  SG T+DR  I+  L       P+T+ PL  +Q  LIPN A
Sbjct: 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ--LIPNLA 263

Query: 65  LRSLISNF 72
           ++ +I  F
Sbjct: 264 MKEVIDAF 271

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 80.0 bits (197), Expect = 6e-19
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHR-----TCPITKLPLPD 55
           +     F CPI+ E M  PV     GHT++  +I R ++S  +      CP       D
Sbjct: 1  GSSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTD 60

Query: 56 --QPSLIPNHALRSLISNFTR 74
            +  LI + ALR  I N  +
Sbjct: 61 IRKSDLIQDEALRRAIENHNK 81

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 80.5 bits (198), Expect = 2e-17
 Identities = 50/285 (17%), Positives = 99/285 (34%), Gaps = 18/285 (6%)

Query: 100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN 159
           SS L  +   +       ++  +  R L++              +     +E AL LL +
Sbjct: 10  SSGLVPRGSHMRGQRGEVEQMKSCLRVLSQ---PMPPTAGEAEQAADQQEREGALELLAD 66

Query: 160 LSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLA-VVEVNKATIGDYPYA 217
           L  + DN         +  +V   L  G+   R  AA +I + +  V   +  +     A
Sbjct: 67  LCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-A 125

Query: 218 INALVSLLQNGKLIREKKEAATALYALT-SFPENRKRVVSCGAVPILMRLADAG----LE 272
           +  L+ LL        + +A  A+  L         + +      +LMR           
Sbjct: 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185

Query: 273 RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG 332
           ++  +L  L+      +  +   G V   V +++T  S   +  L  L  L     +   
Sbjct: 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245

Query: 333 DSRK-----EGVLDICMGLLE--DDNEKVRRNANNLIQTLSGNPS 370
           + R+     E +L     LL+  ++ ++       L+QT   +P+
Sbjct: 246 ECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPA 290

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 90  QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTL 149
           + L+ +L    +    ++++L  ++ L +   A   +       S ++  +        L
Sbjct: 127 RKLLRLLDR-DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM--QQQVQKL 183

Query: 150 QEKALSLLLNLSLDD-DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208
           + K+  LL NL +   ++K  L + G V ++VA +R             + SL       
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV--TDFP 241

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAA 238
             + +       L  LL++   + ++ E  
Sbjct: 242 QGVRECREPELGLEELLRHRCQLLQQHEEY 271

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 5  FPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLD-SGHRTCPITKLPLPDQPSLIPN 62
           PD+  C I  +IM+D V++   G+++    I+  L  S   TCP          +LI N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 63 HALRSLISNFTRTPLPKPQLE 83
            LR  ++NF        +L 
Sbjct: 70 KFLRQAVNNFKNETGYTKRLR 90

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 66.5 bits (162), Expect = 8e-14
 Identities = 11/72 (15%), Positives = 30/72 (41%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
             ++  + F+C    E++  P+     H   +  + R   +   +CP  +  L    ++ 
Sbjct: 45  FLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ 104

Query: 61  PNHALRSLISNF 72
            N  L+++++  
Sbjct: 105 VNQPLQTVLNQL 116

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 9  FKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPL-PDQPSLIP 61
            C IS ++   PV+   S   F+++ +++++       PIT  PL  ++  ++ 
Sbjct: 4  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEE--IVE 55

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 65.0 bits (158), Expect = 5e-13
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 4   QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
           +    F C    E++  PV     H   +  +QR   +   +CP  +  L     +IPN 
Sbjct: 74  KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133

Query: 64  ALRSLISNF 72
            L++L+  F
Sbjct: 134 ILQTLLDLF 142

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 24/204 (11%)

Query: 144 SDGFTLQEKALSLLLNLSL-DDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLA 202
           S     Q      + +    D+  K  +   G + ++V  LR  + + +  AA  + +L 
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72

Query: 203 VV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP 261
                NK         I   VSLL+       +K+    L+ L S  +  K  +   A+P
Sbjct: 73  FRSTTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTDELKEELIADALP 130

Query: 262 ILMRLADAG--------------------LERAVEVLSILVKCKEGREEMMRVSGCVGVF 301
           +L                              A   L  L     GR+ M   SG +   
Sbjct: 131 VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL 190

Query: 302 VKMLKTGSSRAVQCSLFTLSCLCC 325
           +  ++   + +        +C+C 
Sbjct: 191 MAYVQNCVAASRCDDKSVENCMCV 214

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 44/322 (13%), Positives = 103/322 (31%), Gaps = 46/322 (14%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           L+ +L S +     +  +   L  L  R + ++ +      +   ++ L+  +    +Q+
Sbjct: 49  LVDLLRSPNQ--NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR-RTGNAEIQK 105

Query: 152 KALSLLLNLSLDDDNKVGLVAEG---------------AVSRVVAALRFGSPDCRAIAAT 196
           +   LL NLS  D+ K  L+A+                       +     P+    A  
Sbjct: 106 QLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165

Query: 197 IITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS 256
            + +L+  +  + T+ +Y   I++L++ +QN   +   +    ++        N    + 
Sbjct: 166 CLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC--VAASRCDDKSVENCMCVLHNLSYRLD 223

Query: 257 CGAVPILMRLADAGLERAVE------------------VLSILVKCKEGREEMMRV--SG 296
                   +L         E                      L + +   +    +  S 
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283

Query: 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS------RKEGVLDICMGLLEDD 350
            +  ++ ++      A   +          S+ +           KE  L     LL+  
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343

Query: 351 NEKVRRNANNLIQTLSGNPSMQ 372
           N  V R+  +L+  +S +P + 
Sbjct: 344 NSDVVRSGASLLSNMSRHPLLH 365

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 25/179 (13%), Positives = 58/179 (32%), Gaps = 15/179 (8%)

Query: 84  HANPNPQTLISVLTSKSSP--LESKLESLTQLTKLSKRDSASRRKLT--ESGAVSAVLNC 139
           + +   +T ++++        LE+   +L  LT      S+   +L   +   +  +   
Sbjct: 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL 339

Query: 140 LKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCR-------A 192
           L   S    +     SLL N+S        ++       V   L   + +         +
Sbjct: 340 L--QSGNSDVVRSGASLLSNMSRHPLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396

Query: 193 IAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251
              T+   +A               +N +++L ++    +  + A   L  + S  E +
Sbjct: 397 ACYTVRNLMASQPQLAKQYFS-SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 19/181 (10%), Positives = 45/181 (24%), Gaps = 16/181 (8%)

Query: 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209
                  L     +      L    A+   +  +     D    A               
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 210 TIGDYP------YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL 263
           + G           +  +  LLQ+G      +  A+ L  ++  P   + + +     + 
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNS-DVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377

Query: 264 MRLADAG---------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQ 314
             L             L  A   +  L+  +    +    S  +   + + ++ +S    
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 315 C 315
            
Sbjct: 438 E 438

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.8 bits (167), Expect = 7e-13
 Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 30/251 (11%)

Query: 100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN 159
           +   + +  SL  L   S R             +  V+  L        ++  A + L +
Sbjct: 19  APLAQHERGSLASL--DSLRKGGPPPPNWRQPELPEVIAMLG--FRLDAVKSNAAAYLQH 74

Query: 160 LSL-DDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPY 216
           L   +D  K  +     +  +V  L     +    A   + +++    + NK  I +   
Sbjct: 75  LCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC-D 133

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL--ADAGLER- 273
            + ALV LL+  + +   +     L+ L+S    +  +V      +   +    +G ER 
Sbjct: 134 GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193

Query: 274 -----------AVEVLSILVKC--------KEGREEMMRVSGCVGVFVKMLKTGSSRAVQ 314
                         VL+    C         E R ++    G V   + +++    +   
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253

Query: 315 CSLFTLSCLCC 325
            S    +C+C 
Sbjct: 254 DSKLVENCVCL 264

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 22/247 (8%)

Query: 64  ALRSLISNFTRTPLPKPQL-EHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA 122
           AL  ++           +L E+     + L   +  +    E   E+   +   +    A
Sbjct: 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPA 298

Query: 123 SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-----DNKVGLVAEGAVS 177
              +L     V  +   L   S    + E +   + NL           +  L  E A+S
Sbjct: 299 RGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358

Query: 178 RVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKE- 236
            +   L          A+  + +LAV   NK  IG   +AI  LV  L  G+        
Sbjct: 359 AIADLLTNEHERVVKAASGALRNLAVDARNKELIG--KHAIPNLVKNLPGGQQNSSWNFS 416

Query: 237 ---AATALYAL----TSFPENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVK 283
                + L  +        E  K++     +  L+ +  +G      +  A  VL  +  
Sbjct: 417 EDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476

Query: 284 CKEGREE 290
            KE R+ 
Sbjct: 477 YKELRKP 483

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 17/217 (7%)

Query: 55  DQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSP--LESKLESLTQ 112
              +     A  ++ +N   +P    +L       +  IS+L    +P  LE+   ++  
Sbjct: 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335

Query: 113 LTKLSKRDS-ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171
           L           R  L +  A+SA+ + L   ++   + + A   L NL++D  NK  L+
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLL--TNEHERVVKAASGALRNLAVDARNKE-LI 392

Query: 172 AEGAVSRVVAALRFGSPDCR---------AIAATIITSLAVVEVNKATIGDYPYAINALV 222
            + A+  +V  L  G  +           +I  TI   +A        + +    I  LV
Sbjct: 393 GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ-GIEKLV 451

Query: 223 SLLQNGKL-IREKKEAATALYALTSFPENRKRVVSCG 258
            + ++G    +E + AA  L  +  + E RK +   G
Sbjct: 452 LINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 63.8 bits (154), Expect = 8e-12
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLD-SGHRTCPIT----KLPLP 54
                  +  CPI+ +    P+I     H FDR  IQ +L     R CP       + + 
Sbjct: 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233

Query: 55  DQPSLIPNHALRSLISNFTR 74
           D    + +  +         
Sbjct: 234 D---FVRDPIMELRCKIAKM 250

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 25/218 (11%), Positives = 76/218 (34%), Gaps = 23/218 (10%)

Query: 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL-DDDNKVGLVAEGAVSRVVAALRFGS 187
               +   ++ L+      +    A + + +      + +  +     + +++  L+  +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 188 PDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246
            D +      + +L      NK  + +    +  L+ +L+  + +  KK+    L+ L+S
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 247 FPENRKRVVSCGAVPILMRL-------ADAGLERAVEVLSILVKC-------------KE 286
             + +  +++   + +   +        +    +A  +L   +                +
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
           GR+ M R  G +   V  ++   +        T +C+C
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVC 222

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 7  DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD------QPSLI 60
           + +C I +EI+ +PV L   HT  +   Q  ++     CP  +  +        + + +
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL 73

Query: 61 PNHALRSLISNF 72
           N  L ++I   
Sbjct: 74 VNVELWTIIQKH 85

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 57.5 bits (139), Expect = 8e-11
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 4  QFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
             D  +C I  E  +  +I+    H +    I+++L S    CP   + +  +P L  N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-SYKTQCPTCCVTVT-EPDLKNN 75

Query: 63 HALRSLISNFTR 74
            L  L+ +   
Sbjct: 76 RILDELVKSLNF 87

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 57.6 bits (139), Expect = 8e-11
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 4  QFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
             + F+C I +E + D  +          + I+RWL      CP  + PL     L+  
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNC 76

Query: 63 HALRSLISNFTRTPLPKPQLE 83
               +        L      
Sbjct: 77 RWAEEVTQQLDTLQLCSLTKH 97

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 4  QFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLD-SGHRTCPITKLPLPDQPSLIP 61
            PD+  C I  +IM+D V++   G+++    I+  L  S   TCP          +L  
Sbjct: 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSG 70

Query: 62 NH 63
            
Sbjct: 71 PS 72

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 56.9 bits (137), Expect = 5e-10
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 7   DDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
            +  CPI L+++ + +      H F    I   L SG++ CP  +  L  + SL P+   
Sbjct: 53  SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 66  RSLISNF 72
            +LIS  
Sbjct: 113 DALISKI 119

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 1   MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQP-SL 59
           M     ++ +C I  E   + V L+  H+F    I  W+      CPI +  +  +  SL
Sbjct: 57  MNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKTYSL 115

Query: 60  IPNHALRSLISNFTR 74
           + ++ +  +++N + 
Sbjct: 116 VLDNCINKMVNNLSS 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 62/275 (22%)

Query: 38  WLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHA-------NPNPQ 90
           WL+  +   P T L +  +     +    S   + +   L    ++          P   
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 91  TLISVLTSKSSP--LES-KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGF 147
            L+ VL +  +     +  L     LT    R       L  S A +  +  L  HS   
Sbjct: 246 CLL-VLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFL--SAATTTHI-SLDHHSMTL 298

Query: 148 TLQEKALSLL---LNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV 204
           T  E   SLL   L+    D     L  E  ++         +P  R ++  II     +
Sbjct: 299 TPDE-VKSLLLKYLDCRPQD-----LPRE-VLT--------TNP--RRLS--IIA--ESI 337

Query: 205 EVNKATIGDYP-YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL 263
               AT  ++     + L +++++   + E  E       L+ FP +         +P  
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-------IPT- 389

Query: 264 MRLADAGLERAVEVLSILVKCKEGREEMMRVSGCV 298
                        +LS++       + M+ V+   
Sbjct: 390 ------------ILLSLIWFDVIKSDVMVVVNKLH 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 53/383 (13%), Positives = 104/383 (27%), Gaps = 144/383 (37%)

Query: 5   FPDDFKCP----ISLEIMSDPV---ILSSGHTFDRA-------------SIQRWLDSGHR 44
           F D+F C     +   I+S      I+ S                     +Q++++   R
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 45  T------CPITKLPLPDQPSLIPNH--ALRSLISN----FTRTPLPKPQ--------LEH 84
                   PI       QPS++       R  + N    F +  + + Q        L  
Sbjct: 89  INYKFLMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 85  ANPNPQTLI--------SVLTS---KSSPLESKLES----------------LTQLTKLS 117
             P    LI        + +      S  ++ K++                 L  L KL 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 118 KR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKAL--SLLLNLSLDDDNKVGLVAEG 174
            + D     +   S  +   ++ ++       L+ K     LL+   L +      V   
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLV---LLN------VQN- 255

Query: 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREK 234
             ++   A       C+     ++T+                               R K
Sbjct: 256 --AKAWNAFNLS---CK----ILLTT-------------------------------RFK 275

Query: 235 KEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRV 294
            +    L A T        +         +      L    EV S+L+K  + R + +  
Sbjct: 276 -QVTDFLSAAT-----TTHIS--------LDHHSMTLTPD-EVKSLLLKYLDCRPQDLPR 320

Query: 295 SGC------VGVFVKMLKTGSSR 311
                    + +  + ++ G + 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLAT 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 63/196 (32%)

Query: 5   FPDDFKCPIS-LEIM------SDP-VILSSGHTFDRASIQRWLDSGHRTCPI------TK 50
           FP     P   L ++      SD  V+++  H    + +++       T  I       K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKES--TISIPSIYLELK 436

Query: 51  LPLPDQPSLIPNHALRSLIS--NFTRT----PLPKPQLE---------HANPNPQTLISV 95
           + L ++ +L   H  RS++   N  +T     L  P L+         H           
Sbjct: 437 VKLENEYAL---H--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL---------- 481

Query: 96  LTSKSSPLESKLESLTQL--------TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGF 147
              K+     ++     +         K+    +A       SG++   L  LK +    
Sbjct: 482 ---KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA----WNASGSILNTLQQLKFYKPYI 534

Query: 148 TLQEKALSLLLNLSLD 163
              +     L+N  LD
Sbjct: 535 CDNDPKYERLVNAILD 550

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
               ++CPI L  + + V    GH F +A I + +      CP+    L +   L P++
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ-LFPDN 72

Query: 64 ALRSLISN 71
            +  I +
Sbjct: 73 FAKREILS 80

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 27/68 (39%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
           F     C I   I++DPV  S  H F R  I R L      CP  + P        P  
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78

Query: 64 ALRSLISN 71
          +  +++++
Sbjct: 79 SFLNILNS 86

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 1  MATQFP----DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-----GHRTCPITKL 51
          MA+       ++  CPI LE++ +PV     H+F RA I    +S     G   CP+ ++
Sbjct: 8  MASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67

Query: 52 PLPDQPSLIPNHALRSLI 69
          P P   +L PN  + +++
Sbjct: 68 PYP-FGNLKPNLHVANIV 84

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 7  DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPNHA 64
             +CPI LE++ +PV     H F +  + + L+   G   CP+ K  +  + SL  +  
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTR 78

Query: 65 LRSLISNFTRTPLP 78
             L+    +    
Sbjct: 79 FSQLVEELLKIICA 92

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 7  DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQ 56
             +C I L+    PV L   H F    ++     G R C + +  +P+ 
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPED 62

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 3  TQFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPD---QPS 58
          T+      C +      D   +    H+F +  I R+L++  + CPI  + +       +
Sbjct: 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLN 68

Query: 59 LIPNHALRSLISNF 72
          +  +  L+ ++   
Sbjct: 69 IRSDKTLQDIVYKL 82

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 10/53 (18%), Positives = 17/53 (32%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQ 56
             D +KC     ++  P     GH F  + +   L S    C   +  +   
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 1  MA----TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-----GHRTCPITKL 51
          MA        ++  CPI LE+++ P+ L  GH+F +A +           G  +CP+ ++
Sbjct: 8  MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67

Query: 52 PLPDQPSLIPNHALRSLI 69
                ++ PN  + +++
Sbjct: 68 SYQ-PENIRPNRHVANIV 84

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 48.0 bits (115), Expect = 9e-08
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS------GHRTCPITKLPLPD 55
          +    ++  CPI LE++++P+ L  GH+  RA I            G  +CP+  +    
Sbjct: 6  SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS- 64

Query: 56 QPSLIPNHALRSLI 69
             L  N  L +++
Sbjct: 65 FEHLQANQHLANIV 78

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 37/264 (14%)

Query: 124 RRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL 183
            + +  +  +S +   +   S     +++ + ++ N++   +    L  +GAV  ++  L
Sbjct: 450 EKYILRTELISFLKREMHNLSPN--CKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL 507

Query: 184 RFGSPDCRAIAATIITSLA--VVEVNKATI---GDYPYAINALVSLLQNGKL-------- 230
                    I      +L   ++  N   I        AI  L  LL             
Sbjct: 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567

Query: 231 -----IREKKEAATALYALTSFPEN------RKRVVSCGAVPILMRL---ADAGLERA-V 275
                + +  EA  AL  L S   +      +  V +      +  L    +  L+R+ +
Sbjct: 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627

Query: 276 EVLSILVKCKEGREEMM------RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE 329
           E++S ++                +      + VK+L+     + +      + +      
Sbjct: 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687

Query: 330 ICGD-SRKEGVLDICMGLLEDDNE 352
           I  +   K+ +++  + +  D  +
Sbjct: 688 IAKELLTKKELIENAIQVFADQID 711

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 31/184 (16%)

Query: 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLE---- 272
            I+ L   + N      K++    +Y +T       ++   GAV I++       +    
Sbjct: 458 LISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEP 516

Query: 273 ------RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQC----------- 315
                 RA+  + I        ++       +    ++L   +                 
Sbjct: 517 IRILGCRALTRMLIFTNPGLIFKK-YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575

Query: 316 ---SLFTLSCLCCCSQEICGDSRK-----EGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367
              +L  L+ L         +  K     +        L+ D+N  ++R+   LI  +  
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 368 NPSM 371
           +P  
Sbjct: 636 HPLT 639

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
               ++CPI L  + + V    GH F +A I + +      CP+    L +      N 
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 64 ALRSLISNFTRTP 76
          A R ++S   + P
Sbjct: 74 AKREILSLMVKCP 86

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 18/61 (29%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
           T+    + C     ++  P     GH +    +   L SG + C         +  +  
Sbjct: 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84

Query: 62 N 62
           
Sbjct: 85 L 85

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 7   DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
               C I  E   D  I   GH    + +  W +S  + CP  +  +     ++ + 
Sbjct: 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 387

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 7  DDFKCPISLEIMSD-------PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL 59
              CPI ++  S+        V    GH F    ++  L + + TCP  +  +  +   
Sbjct: 6  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYH 64

Query: 60 IPNHALRSLISNFTRTPLPKPQLE 83
                 ++          +    
Sbjct: 65 PIYIGSGTVSCPICMDGYSEIVQN 88

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCP 47
            +  ++  CPI L+I+  PV +  GH F    I +  ++  G   CP
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 2  ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRT--CP 47
                +  C + LE + +PVI+  GH F +A I RW +   R   CP
Sbjct: 9  LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 1  MAT-----QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCP 47
          MA+     +  ++  CPI L+I+  PV +  GH F    I +  ++  G   CP
Sbjct: 8  MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 7  DDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
              C I    + D   ++   HTF ++ I R        CP   + +     L 
Sbjct: 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLS 67

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 8  DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPI 48
           F+C I  +   +PV+    H F  +       +    C I
Sbjct: 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYI 54

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 4  QFPDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWLDSGHRT--CPI--TKLPLPD 55
             +  +CPI +E  ++    P +L  GHT  R  +++ L S      CP       +  
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70

Query: 56 QPSLIPNHALRSLI 69
             L  N  +    
Sbjct: 71 LTQLTDNLTVLKSG 84

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPS 58
          Q  D+ +C I ++  +  +IL   H+F +  I +W D  HR CPI +L +     
Sbjct: 11 QLTDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 7  DDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPI 48
             +CPI LE  S+  +     H F    I RW+   + TCP+
Sbjct: 4  VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPL 45

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 8  DFKCPISLEIMSDPVILSS-------GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
             CPI ++  S+ V           GH F    ++  L +   TCP  +  + +     
Sbjct: 3  MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI-NHKRYH 60

Query: 61 PN 62
          P 
Sbjct: 61 PI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 7  DDFKCPISLEIMSDPVILSS-------GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL 59
              CPI ++  S+ V           GH F    ++  L +   TCP  +  + +    
Sbjct: 9  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI-NHKRY 66

Query: 60 IPNH 63
           P +
Sbjct: 67 HPIY 70

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 8/49 (16%)

Query: 7  DDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPI 48
              CPI ++  S+        V    GH F    ++  L +   TCP 
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPT 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.78
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.78
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.77
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.72
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.72
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
3grl_A	651	General vesicular transport factor P115; vesicle t	99.63
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.61
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.56
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.55
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.53
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.53
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.52
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.51
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.51
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.5
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.5
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.49
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.47
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.47
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.47
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.47
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.46
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.46
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.44
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.44
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.44
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.42
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.42
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.4
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.39
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.38
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.38
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.38
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.37
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.36
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.35
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.34
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.33
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.33
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.32
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.3
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.29
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.28
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.26
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.25
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.23
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.2
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.16
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.16
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.14
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.13
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.12
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.11
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.1
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.01
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.99
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	98.98
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.98
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.93
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.93
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.91
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.91
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.85
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.83
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.81
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.76
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.7
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.68
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.67
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.67
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.59
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.56
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.53
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.51
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.48
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.46
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.43
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.41
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.35
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.34
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.34
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.33
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.32
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.22
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.22
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.18
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.11
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.1
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.07
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.03
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.0
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.99
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.94
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.89
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.82
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.61
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.5
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.48
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.19
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.07
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.05
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.68
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.67
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.63
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.32
3nw0_A	238	Non-structural maintenance of chromosomes element	96.09
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.45
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.31
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.13
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.08
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.03
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.94
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	94.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.69
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.58
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.53
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.25
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.17
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.59
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.57
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.36
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.29
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.86
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.47
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.28
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.99
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.05
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.66
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	90.36
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.55
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	89.16
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	89.04
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	88.96
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.64
2x1g_F	971	Cadmus; transport protein, developmental protein,	88.56
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.83
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.04
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.66
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	85.3
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	85.19
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	84.5
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.78
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	83.62
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	82.78
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	82.59
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	82.26
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	80.27

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=7.2e-35  Score=266.42  Aligned_cols=264  Identities=22%  Similarity=0.267  Sum_probs=232.4

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHhcCCCCcc-ccccccc
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLLNLSLDDD-NKVGLVA  172 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~  172 (372)
                      .+.+..|+++|.+++. ++++|+.|++.|+++.|+.+|...         ..+++++..|+++|.||+.+++ ++..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445589999999998 578999999999999999999621         1246799999999999998855 7777755


Q ss_pred             -cCChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcC-C
Q 017402          173 -EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQN-GKLIREKKEAATALYALTS-F  247 (372)
Q Consensus       173 -~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~-~  247 (372)
                       .|+|+.|+++|++++.+++..|+++|.+|+..  +++|..|.+ .|+|+.|+++|.. .+. .+++.|+.+|+||+. +
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKE-STLKSVLSALWNLSAHC  202 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccC
Confidence             55699999999999999999999999999975  468888888 7999999998654 445 899999999999999 6


Q ss_pred             CchhHHHH-hcCchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHH
Q 017402          248 PENRKRVV-SCGAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQ  314 (372)
Q Consensus       248 ~~~~~~i~-~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~  314 (372)
                      ++++..++ ..|+++.|+++|.++        .+.++.+|+||+.    .++++..+.+ .|+++.|+.+|.+++..+++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHH
Confidence            68888888 789999999999532        5779999999995    8888888888 89999999999999999999


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402          315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS  370 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  370 (372)
                      .|+++|++++..+++.+..+++.|+++.|+.+++++++++|+.|+++|++|..++.
T Consensus       282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999998889999999999999999999999999999999999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=6.2e-34  Score=267.69  Aligned_cols=259  Identities=22%  Similarity=0.273  Sum_probs=228.7

Q ss_pred             HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHhcCCCCcc-ccccccc-cCCh
Q 017402          108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLLNLSLDDD-NKVGLVA-EGAV  176 (372)
Q Consensus       108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~-~g~i  176 (372)
                      +|+++|.|++. ++++|+.|.+.|+++.|+.+|...         ..+++++..|+++|.||+.+++ ++..+.. .|+|
T Consensus       167 qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI  245 (458)
T 3nmz_A          167 PAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM  245 (458)
T ss_dssp             HHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence            89999999987 588999999999999999999521         1346789999999999998865 6666654 5669


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHH
Q 017402          177 SRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKR  253 (372)
Q Consensus       177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~  253 (372)
                      +.|+++|++++.+++..|+++|.+|+..  ++++..|.+ .|+|+.|+++|....+..+++.|+.+|+||+. +++++..
T Consensus       246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~  324 (458)
T 3nmz_A          246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD  324 (458)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            9999999999999999999999999984  468888888 79999999986543333899999999999999 7789988


Q ss_pred             HH-hcCchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          254 VV-SCGAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       254 i~-~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      ++ ..|+++.|+.+|.++        .+.++++|+||+.    .++.+..+.+ .|+++.|+.+|.+++..+++.|+++|
T Consensus       325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHHH
Confidence            88 789999999999432        5779999999994    7888888888 89999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      ++++..+++.+..+++.|+++.|+++++++++++++.|+++|++|..+.
T Consensus       404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999888999999999999999999999999999999999999988765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.3e-32  Score=264.25  Aligned_cols=282  Identities=20%  Similarity=0.257  Sum_probs=240.1

Q ss_pred             CCCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402           83 EHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL  162 (372)
Q Consensus        83 ~~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~  162 (372)
                      ....+..|.++++|.++  +++++.+|++.|.+++..+++++..+++.|+||.|+++|+  +.+.++++.|+++|.||+.
T Consensus        44 ~~~~~~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~  119 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF  119 (584)
T ss_dssp             CCCCCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred             CcccccHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence            34567789999999876  7899999999999999888899999999999999999999  8899999999999999998


Q ss_pred             C--ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh-------------
Q 017402          163 D--DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ-------------  226 (372)
Q Consensus       163 ~--~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-------------  226 (372)
                      +  ++++..|++.|+|+.|+.+|++ .+.++++.++++|++||.+++++..|+.  ++|+.|+.++.             
T Consensus       120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~  197 (584)
T 3l6x_A          120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNED  197 (584)
T ss_dssp             SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC------
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccc
Confidence            4  7899999999999999999997 5789999999999999999999999985  67999999872             


Q ss_pred             ----cCCchHHHHHHHHHHHhhcCCCc-hhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCCHhHH--
Q 017402          227 ----NGKLIREKKEAATALYALTSFPE-NRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKCKEGR--  288 (372)
Q Consensus       227 ----~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~~~--  288 (372)
                          +..+..++++|+++|+||+.+.+ +|..+++. |+++.|+.++.+.          .+.|+++|+||+..-...  
T Consensus       198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~  277 (584)
T 3l6x_A          198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP  277 (584)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence                11124899999999999999764 68999986 6678999999531          688999999999863211  


Q ss_pred             ------------------------HHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC----HHHHHHHHhcCh
Q 017402          289 ------------------------EEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS----QEICGDSRKEGV  339 (372)
Q Consensus       289 ------------------------~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~  339 (372)
                                              +.+.. .++++.|+.++.. .++.+++.|+++|++||...    ...+..+.+.|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g  356 (584)
T 3l6x_A          278 QAERYQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA  356 (584)
T ss_dssp             TCCC--------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred             chhhhhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence                                    11111 3567888999964 67899999999999999764    244556667899


Q ss_pred             hHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402          340 LDICMGLLEDDNEKVRRNANNLIQTLSGNPSM  371 (372)
Q Consensus       340 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  371 (372)
                      ++.|+.++.++++++++.|.++|++|..+...
T Consensus       357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~  388 (584)
T 3l6x_A          357 LSAIADLLTNEHERVVKAASGALRNLAVDARN  388 (584)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence            99999999999999999999999999987654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7.3e-33  Score=263.62  Aligned_cols=276  Identities=17%  Similarity=0.196  Sum_probs=235.7

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.++..|.++  +++.+..|++.|++++.+++.++..+++.|+||.|+++|+  +++++++..|+++|.||+.+ +++
T Consensus         3 ~l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~   78 (457)
T 1xm9_A            3 TIPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             CHHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             CHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHH
Confidence            347799999886  7899999999999999878778889999999999999999  78999999999999999987 899


Q ss_pred             cccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh--------cCC-------c
Q 017402          167 KVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ--------NGK-------L  230 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~-------~  230 (372)
                      +..|++.|+++.|+++|+ +++.++++.++++|+||+..++++..+.+  |++|.|+.++.        +..       +
T Consensus        79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhccccc
Confidence            999999999999999999 78999999999999999999888888876  99999999993        221       2


Q ss_pred             hHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhh-------h---HHHHHHHHHHHhCCHh-------------
Q 017402          231 IREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADA-------G---LERAVEVLSILVKCKE-------------  286 (372)
Q Consensus       231 ~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~-------~---~e~a~~~L~~L~~~~~-------------  286 (372)
                      ..+...|+++|+|||.+++++..+++. |+++.|+.+|.+       +   .+.++.+|.||+...+             
T Consensus       157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            356779999999999998899999998 999999999964       1   6789999999984211             


Q ss_pred             --------------------------------------HHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC
Q 017402          287 --------------------------------------GREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       287 --------------------------------------~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  327 (372)
                                                            +.+.+. +.|+++.|+.+|.. .++.+++.|+++|+++|.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~  315 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence                                                  111222 26789999999976 46899999999999999764


Q ss_pred             HH----H-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402          328 QE----I-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS  370 (372)
Q Consensus       328 ~~----~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  370 (372)
                      ..    . +..+.+.|+++.|++++.++++++++.|+++|++|+.+.+
T Consensus       316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~  363 (457)
T 1xm9_A          316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence            32    3 3344568999999999999999999999999999987654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.3e-32  Score=255.17  Aligned_cols=280  Identities=20%  Similarity=0.267  Sum_probs=237.7

Q ss_pred             CCchhHHHHhhccC----------CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCH----------HHHHHHHhhcCCC
Q 017402           87 PNPQTLISVLTSKS----------SPLESKLESLTQLTKLSKRDSASRRKLTESGAV----------SAVLNCLKIHSDG  146 (372)
Q Consensus        87 ~~~~~li~~L~~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~~~  146 (372)
                      .-.|.|+++|....          ++++.+.+|+++|.|++.++++......+.|++          +.+++++.+...+
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            34578999998642          347999999999999999998888888888888          6666677643212


Q ss_pred             hh-----HHH-------HHHHHHhcCCCCccccccccccCChHHHHHHHhc-----------CChHHHHHHHHHHHHhcc
Q 017402          147 FT-----LQE-------KALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-----------GSPDCRAIAATIITSLAV  203 (372)
Q Consensus       147 ~~-----~~~-------~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-----------~~~~~~~~a~~~L~~ls~  203 (372)
                      .+     +++       .|+++|.|++.++++|..|.+.|++++|+.+|..           .+..++..|+++|.||+.
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~  229 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF  229 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence            22     434       9999999999999999999999999999999952           246789999999999998


Q ss_pred             ccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC--CchhHHHHhcCchHHHHHHH-hhh----HHHHH
Q 017402          204 VEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF--PENRKRVVSCGAVPILMRLA-DAG----LERAV  275 (372)
Q Consensus       204 ~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll-~~~----~e~a~  275 (372)
                      .++ ++..+....|+||.|+.+|+++++ +++..|+++|+||+..  ++++..+++.|+|+.|+++| .++    .+.++
T Consensus       230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          230 GDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            774 677775435779999999998877 9999999999999984  46889999999999999986 322    67899


Q ss_pred             HHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCCh----hHHHhHHHHHHHHhc---CCHHHHHHHHhcChhHHHHHHh
Q 017402          276 EVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSS----RAVQCSLFTLSCLCC---CSQEICGDSRKEGVLDICMGLL  347 (372)
Q Consensus       276 ~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~~~~l~~ll  347 (372)
                      .+|+||+. +++++..+....|+++.|++++.+.++    .+++.|+++|++++.   .++++++.+++.|+++.|+.++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            99999999 888899998558999999999987654    489999999999997   5799999999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHHhc
Q 017402          348 EDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       348 ~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .+++.++++.|+++|.+|..
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHS
T ss_pred             cCCChHHHHHHHHHHHHHHc
Confidence            99999999999999999984

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=1.7e-30  Score=257.55  Aligned_cols=275  Identities=16%  Similarity=0.152  Sum_probs=242.4

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-----------------------------HHH---HHHhhcCCHHHHH
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDS-----------------------------ASR---RKLTESGAVSAVL  137 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i~~L~  137 (372)
                      |.|+.+|+++  ++..+..|+++|.|++.+++                             .++   +.+++.|++|.|+
T Consensus       424 p~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV  501 (810)
T 3now_A          424 HALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC  501 (810)
T ss_dssp             HHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence            6799999864  78899999999999998542                             223   6788999999999


Q ss_pred             HHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc--cc
Q 017402          138 NCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD--YP  215 (372)
Q Consensus       138 ~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~  215 (372)
                      .+|+  ++++.+++.|+++|.|++.+++++..+++.|++++|+.+|++++...++.|+++|.+|+...+....+..  ..
T Consensus       502 ~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~  579 (810)
T 3now_A          502 ALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL  579 (810)
T ss_dssp             HHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence            9999  8899999999999999999988999999999999999999999999999999999999876544433321  14


Q ss_pred             chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHH
Q 017402          216 YAINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREE  290 (372)
Q Consensus       216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~  290 (372)
                      |++++|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.++.++    ++.|+.+|+||+.+++.+..
T Consensus       580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~  659 (810)
T 3now_A          580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM  659 (810)
T ss_dssp             HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred             cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence            799999999986644244568999999999975 6889999999999999999654    78899999999999999999


Q ss_pred             HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +....|+++.|+.++...+..+++.|+++|++++.++++..+.+++ .|+++.|+.++.++++++|+.|.++|.++..+
T Consensus       660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            8864789999999999999999999999999999977888899998 89999999999999999999999999998764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.9e-30  Score=245.68  Aligned_cols=278  Identities=17%  Similarity=0.199  Sum_probs=236.7

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      ..|.|+.+|.++  +++++..|+++|.+++.++++++..+++.|+||.|+++|.. ++++++++.++++|.||+.+++++
T Consensus        45 ~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           45 GICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             HHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             CHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcCHHhH
Confidence            357899999865  88999999999999999778999999999999999999984 357899999999999999999999


Q ss_pred             ccccccCChHHHHHHHh--------cC--------ChHHHHHHHHHHHHhcccccchhhhcccc-chHHHHHHHhhcC--
Q 017402          168 VGLVAEGAVSRVVAALR--------FG--------SPDCRAIAATIITSLAVVEVNKATIGDYP-YAINALVSLLQNG--  228 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~--------~~--------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~--  228 (372)
                      ..+++ |+++.|+++|.        ++        +.++...|+++|.||+..++++..+.+ . |+++.|+.++++.  
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~  199 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVA  199 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhcc
Confidence            98999 99999999993        22        456667999999999988788888887 5 9999999888641  


Q ss_pred             ----C---------------------------------------------------------------------------
Q 017402          229 ----K---------------------------------------------------------------------------  229 (372)
Q Consensus       229 ----~---------------------------------------------------------------------------  229 (372)
                          +                                                                           
T Consensus       200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (457)
T 1xm9_A          200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL  279 (457)
T ss_dssp             HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred             ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence                1                                                                           


Q ss_pred             -----------------chHHHHHHHHHHHhhcCCCch------hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHh
Q 017402          230 -----------------LIREKKEAATALYALTSFPEN------RKRVVSCGAVPILMRLADAG----LERAVEVLSILV  282 (372)
Q Consensus       230 -----------------~~~~~~~a~~aL~~L~~~~~~------~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~  282 (372)
                                       ++.+++.|+++|+||+..+..      +..+.+.|++|.|+++|.++    +..|+++|.||+
T Consensus       280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls  359 (457)
T 1xm9_A          280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS  359 (457)
T ss_dssp             GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence                             124566789999999975432      22334689999999999665    678999999999


Q ss_pred             CCHhHHHHHHhccchHHHHHHHHhcCCh------hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHH
Q 017402          283 KCKEGREEMMRVSGCVGVFVKMLKTGSS------RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVR  355 (372)
Q Consensus       283 ~~~~~~~~i~~~~g~i~~L~~ll~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~  355 (372)
                      .+++.+..+..  |+++.|+++|...++      .+...++.+|.++...+++.+..+.+.|+++.|++++.++ +++++
T Consensus       360 ~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~  437 (457)
T 1xm9_A          360 RHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA  437 (457)
T ss_dssp             TSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence            99888776654  699999999987543      5677999999999988899999999999999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 017402          356 RNANNLIQTLSGNPSMQ  372 (372)
Q Consensus       356 ~~a~~~L~~l~~~~~~~  372 (372)
                      ++|.++|.++..+++.|
T Consensus       438 ~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          438 EAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHHcchhhh
Confidence            99999999999888764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=3.3e-30  Score=248.82  Aligned_cols=276  Identities=19%  Similarity=0.247  Sum_probs=242.6

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.|+++|++. +++++|.+|+++|.|++.+++++++.+++.|+||.|+.+|+  +++.++++.|+++|.||+.+ +..
T Consensus       101 ~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          101 LIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHH
Confidence            358899999764 47899999999999999999999999999999999999999  89999999999999999987 667


Q ss_pred             cccccccCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402          167 KVGLVAEGAVSRVVAALRFGS-----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL  241 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL  241 (372)
                      +..+.+.|+++.|+.+|...+     ...+..++++|.+++........+....|+++.|+.++.+.++ +++..|+++|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence            888889999999999997654     4567889999999998776655554436899999999998887 9999999999


Q ss_pred             HhhcCCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402          242 YALTSFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTGSSRAVQC  315 (372)
Q Consensus       242 ~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~~~~~~~~~  315 (372)
                      ++|+..++ ....+++.|+++.|+.+|.++    ...++.+|+|++...+. +..+.. .|+++.|+.++.+.++.+++.
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHH
Confidence            99998775 445677889999999999655    67899999999876544 455566 899999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      |+++|.+|+.++++.+..+.+.|+++.|+.++++++.++|+.|+++|.++..+
T Consensus       336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            99999999999899999999999999999999999999999999999988653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=1.4e-29  Score=250.96  Aligned_cols=271  Identities=13%  Similarity=0.163  Sum_probs=234.7

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHh-hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc-
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLT-ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK-  167 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-  167 (372)
                      +.++.+|.++..+.+++..|++.|.+|+. +++.+..++ +.|++|.|+.+|+  +++..++..++++|.||+.+.+.+ 
T Consensus       380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          380 EACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhh
Confidence            45777887754478999999999999998 566788877 5799999999999  788999999999999999864211 


Q ss_pred             --------------------------------ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcccc
Q 017402          168 --------------------------------VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYP  215 (372)
Q Consensus       168 --------------------------------~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~  215 (372)
                                                      ..+++.|+++.|+.+|+++++.+++.|+|+|.|++.+++++..+.+ .
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~-~  535 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ-E  535 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-T
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-C
Confidence                                            4667889999999999999999999999999999988889999988 7


Q ss_pred             chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH---hcCchHHHHHHHhhh-----HHHHHHHHHHHhCC-Hh
Q 017402          216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV---SCGAVPILMRLADAG-----LERAVEVLSILVKC-KE  286 (372)
Q Consensus       216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~---~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~-~~  286 (372)
                      |++++|+.+|+++.+ ..++.|+++|.||+.+.+....+.   ..|++++|+.+|.++     ...++.+|.||+.. ++
T Consensus       536 Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~  614 (810)
T 3now_A          536 GGVKALLRMALEGTE-KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES  614 (810)
T ss_dssp             THHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence            999999999999877 899999999999987544332221   246999999999643     35699999999997 56


Q ss_pred             HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       287 ~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .+..+++ +|+++.|+.++.+.++.+++.|+.+|.|++.+ ++.+..+.+ .|+++.|+.++.+.+..+|+.|+++|.++
T Consensus       615 ~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanL  692 (810)
T 3now_A          615 VRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII  692 (810)
T ss_dssp             HHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            7778888 79999999999999999999999999999986 777777775 78999999999999999999999999999


Q ss_pred             hc
Q 017402          366 SG  367 (372)
Q Consensus       366 ~~  367 (372)
                      +.
T Consensus       693 t~  694 (810)
T 3now_A          693 TS  694 (810)
T ss_dssp             HH
T ss_pred             hC
Confidence            86

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=1.9e-29  Score=244.80  Aligned_cols=276  Identities=19%  Similarity=0.239  Sum_probs=243.4

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.|+++|.++ ++++.+.+|+++|.+++.++++++..+++.|+||.|+.+|.  +.+.++++.|+++|.||+.+ +++
T Consensus       120 ~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          120 LIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHH
Confidence            347899999765 47899999999999999999989999999999999999999  89999999999999999987 678


Q ss_pred             cccccccCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402          167 KVGLVAEGAVSRVVAALRFGS-----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL  241 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL  241 (372)
                      +..+.+.|+++.|+.+|...+     ...+..++++|.+++.+......+....|++|.|+.++.++++ +++..|+++|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence            889999999999999997643     4567889999999998776555554436899999999999887 9999999999


Q ss_pred             HhhcCCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402          242 YALTSFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLKTGSSRAVQC  315 (372)
Q Consensus       242 ~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~~~~~~~~~~  315 (372)
                      .+++..++ ....+++.|+++.|+.+|.++    ...++.+|+|++...+ .+..+.. .|+++.|+.++.+.++.+++.
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHH
Confidence            99998765 556677899999999999655    6789999999987554 4555666 899999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      |+++|.+|+.++++.+..+.+.|+++.|+.++.+++.++|+.|+++|.++..+
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999899999999999999999999999999999999999988653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=6.9e-30  Score=245.39  Aligned_cols=277  Identities=19%  Similarity=0.171  Sum_probs=228.3

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~  166 (372)
                      ..|.|+++|.++  +++++..|+++|.+++.. ++++|..|++.|+|+.|+++|++ ..+.++++.++.+|.||+.++++
T Consensus        91 ~Ip~LV~LL~s~--~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           91 GIPVLVGLLDHP--KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             HHHHHHHGGGCS--SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             CcHHHHHHHCCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchh
Confidence            347899999876  899999999999999985 68899999999999999999994 25788999999999999999999


Q ss_pred             cccccccCChHHHHHHHh------------------cCChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAALR------------------FGSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQN  227 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~------------------~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~  227 (372)
                      +..|++ ++++.|++++.                  ..+.+++.+|+++|.||+..++ ++..|.+..|+|+.|+.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999985 67999999872                  1257899999999999998764 477666545677777776643


Q ss_pred             -------------------------------------------------------------------------CCchHHH
Q 017402          228 -------------------------------------------------------------------------GKLIREK  234 (372)
Q Consensus       228 -------------------------------------------------------------------------~~~~~~~  234 (372)
                                                                                               .....++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                     1112455


Q ss_pred             HHHHHHHHhhcCCC-----chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH
Q 017402          235 KEAATALYALTSFP-----ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML  305 (372)
Q Consensus       235 ~~a~~aL~~L~~~~-----~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll  305 (372)
                      +.|+++|.||+...     .++..+.+.|+++.|+++|.++    .+.++.+|+||+.+...+..| . .|+++.|+.+|
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL  404 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNL  404 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHh
Confidence            66777777776543     1233445678899999999664    778999999999998888766 4 68999999999


Q ss_pred             hcC--------ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhcCCC
Q 017402          306 KTG--------SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSGNPS  370 (372)
Q Consensus       306 ~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~  370 (372)
                      .++        +..+...|+++|.+|+..++++++.+.+.|+++.|+.+++++  .+++++.|+++|.+|..+..
T Consensus       405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            875        356788999999999988899999999999999999999986  89999999999999987653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=1.3e-29  Score=244.74  Aligned_cols=277  Identities=18%  Similarity=0.208  Sum_probs=239.0

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      .+++++.|.++  +++.+.+|+..++++... ...-.+.+++.|+||.|+++|+. +++++++..|+++|.|++.+ +++
T Consensus        59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~  135 (510)
T 3ul1_B           59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQ  135 (510)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence            48899999876  899999999999987642 22246789999999999999983 35688999999999999776 677


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCc----hHHHHHHHHHH
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKL----IREKKEAATAL  241 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL  241 (372)
                      +..+++.|+||.|+.+|++++.++++.|+++|.+++.+. +.+..+.. .|+++.|+.++.+.+.    ...+..++++|
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            888999999999999999999999999999999999865 56777777 7999999999987543    24678999999


Q ss_pred             HhhcCCCchhHHH-HhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhH
Q 017402          242 YALTSFPENRKRV-VSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       242 ~~L~~~~~~~~~i-~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      .|++.+......+ ...|+++.|++++.++    ...++++|++|+.....+...+...|+++.|+.++.+.+..++..|
T Consensus       215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  294 (510)
T 3ul1_B          215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA  294 (510)
T ss_dssp             HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence            9999977655444 4568999999999654    6789999999999877776665558999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      +.+|++++..+++.+..+++.|+++.|+.+++++++.+|+.|+++|.++..+.
T Consensus       295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~  347 (510)
T 3ul1_B          295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  347 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            99999999998999999999999999999999999999999999999997654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.8e-29  Score=230.63  Aligned_cols=239  Identities=19%  Similarity=0.173  Sum_probs=208.2

Q ss_pred             chhHHHHhhcc---------CCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHh
Q 017402           89 PQTLISVLTSK---------SSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLL  158 (372)
Q Consensus        89 ~~~li~~L~~~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~  158 (372)
                      .+.|+.+|...         ..+++.+.+|+++|.+++.+++.++..+... |.||.|+++|+  ++++++++.|+++|.
T Consensus        75 l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~  152 (354)
T 3nmw_A           75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK--SESEDLQQVIASVLR  152 (354)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence            46788888531         1246789999999999999888789888765 55999999999  889999999999999


Q ss_pred             cCCCC--ccccccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCch---
Q 017402          159 NLSLD--DDNKVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLI---  231 (372)
Q Consensus       159 ~l~~~--~~~~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~---  231 (372)
                      ||+..  ++++..|.+.|+|+.|+++| ++++.++++.|+++|++|+. .++++..|....|+|+.|+++|++.++.   
T Consensus       153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~  232 (354)
T 3nmw_A          153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL  232 (354)
T ss_dssp             HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCC
T ss_pred             HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccH
Confidence            99985  56889999999999999975 56789999999999999998 5578888873379999999999987652   


Q ss_pred             HHHHHHHHHHHhhcC----CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHH
Q 017402          232 REKKEAATALYALTS----FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFV  302 (372)
Q Consensus       232 ~~~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~  302 (372)
                      ++++.|+++|+||+.    +++++..+++.|+++.|+.+|.++    ++.|+++|+||+. +++.+..+.+ .|+++.|+
T Consensus       233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv  311 (354)
T 3nmw_A          233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLK  311 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHH
Confidence            489999999999995    778999999999999999999655    7889999999995 6888888888 89999999


Q ss_pred             HHHhcCChhHHHhHHHHHHHHhcCCHHH
Q 017402          303 KMLKTGSSRAVQCSLFTLSCLCCCSQEI  330 (372)
Q Consensus       303 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~  330 (372)
                      +++.++++.+++.|+.+|.+|+.+.++.
T Consensus       312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          312 NLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999886643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=2.8e-27  Score=229.72  Aligned_cols=275  Identities=17%  Similarity=0.193  Sum_probs=242.6

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.|+.+|.++ ++++++..|++.|.+++.++++++..+++.|+++.|+.+|.  +.+.++++.|+++|.+|+.+ +.+
T Consensus       118 ~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          118 VVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             CHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCChhh
Confidence            457789999865 34899999999999999988899999999999999999999  78999999999999999877 556


Q ss_pred             cccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +..+.+.|+++.|+.+| .+.+..++..++++|.+|+........... .|+++.|+.++.+.+. .++..|+++|.+|+
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDE-EVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHH
Confidence            78888899999999999 567899999999999999987544444444 6999999999998877 99999999999999


Q ss_pred             CCCchh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHH
Q 017402          246 SFPENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLF  318 (372)
Q Consensus       246 ~~~~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~  318 (372)
                      ..++.+ ..+++.|+++.|+.+|.++    +..++.+|++|+.. +.....+.. .|+++.|+.++.+. ++.++..|++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~  351 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACW  351 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHH
Confidence            876544 6778899999999999654    77899999999985 445556666 89999999999988 8999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +|.+++..+++....+++.|+++.|+.++++++++++..|.++|.++..+
T Consensus       352 ~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          352 TISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99999988888888999999999999999999999999999999988754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.3e-27  Score=209.11  Aligned_cols=234  Identities=21%  Similarity=0.265  Sum_probs=213.2

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc-cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccch
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNK  208 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~  208 (372)
                      |+++.|+.+|.  +.+++++..|+.+|.+++.++ +++..+.+.|+++.|+.+|++++.+++..++++|.+++.. ++++
T Consensus         2 ~~i~~L~~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLT--STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            67999999999  778999999999999998775 4888899999999999999999999999999999999987 5778


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      ..+.. .|+++.|+.++++++. .++..|+++|.+|+. +++++..+++.|+++.|++++.++    +..++.+|.+|+.
T Consensus        80 ~~~~~-~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           80 KAIVD-AGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHH-TTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88877 7999999999998776 999999999999995 667889999999999999999654    7889999999998


Q ss_pred             CHhHH-HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          284 CKEGR-EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       284 ~~~~~-~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      ..+.. ..+.. .|+++.|+.++.+.++.++..|+.+|.+++..+++.+..+.+.|+++.|+.+++++++++++.|.++|
T Consensus       158 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L  236 (252)
T 4hxt_A          158 GPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL  236 (252)
T ss_dssp             SCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence            55544 56666 89999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 017402          363 QTLSGNP  369 (372)
Q Consensus       363 ~~l~~~~  369 (372)
                      .+|....
T Consensus       237 ~~l~~~~  243 (252)
T 4hxt_A          237 ENIKSGG  243 (252)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            9998765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=2.6e-27  Score=229.80  Aligned_cols=272  Identities=18%  Similarity=0.192  Sum_probs=235.3

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCCccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLDDDN  166 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~~~~  166 (372)
                      |.|+.+|.++  +++++..|+++|.+++.+++++|..+.+.|+++.|+.+|...+   ....++..++++|.+++.+...
T Consensus       165 p~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~  242 (529)
T 3tpo_A          165 PAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  242 (529)
T ss_dssp             HHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence            6688888776  8999999999999999989999999999999999999998321   1235688999999999988655


Q ss_pred             ccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          167 KVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       167 ~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ...+. ..|+++.|+.+|.+++++++..++++|.+++...+.+ ..+.. .|+++.|+.+|.+.+. .++..|+.+|+|+
T Consensus       243 ~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl  320 (529)
T 3tpo_A          243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATEL-PIVTPALRAIGNI  320 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCH-HHHHHHHHHHHHH
T ss_pred             hhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCCh-hHHHHHHHHHHHH
Confidence            55444 3789999999999999999999999999999876544 44555 7999999999998877 9999999999999


Q ss_pred             cCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHH-HHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402          245 TSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGRE-EMMRVSGCVGVFVKMLKTGSSRAVQCSLF  318 (372)
Q Consensus       245 ~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~-~i~~~~g~i~~L~~ll~~~~~~~~~~a~~  318 (372)
                      +..+ +.+..+++.|+++.|+.+|.++    ++.++++|+||+.+..... .+.. .|+++.|+.++.+++..++..|++
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHH
Confidence            8754 5778889999999999999655    6789999999998655544 4555 899999999999999999999999


Q ss_pred             HHHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          319 TLSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       319 ~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +|.+++.+ +++....+++.|+++.|+.++.+.+++++..+.++|.++-
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF  448 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999864 5688888999999999999999999999999999998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=2.9e-27  Score=229.55  Aligned_cols=275  Identities=20%  Similarity=0.174  Sum_probs=241.1

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-HHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCC-cc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDS-ASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~-~~  165 (372)
                      .|.++..|.++  +++.+..|++.|.+++.... .....+++.|+++.|+.+|.  +.+ +.++..|+++|.+++.+ ++
T Consensus        76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT--REDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCCCHH
Confidence            47899999765  89999999999999976543 57888999999999999999  555 89999999999999987 77


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ++..+++.|+++.|+.+|.+++..++..|+++|.+++... .++..+.. .|+++.|+.++....+..++..|+++|++|
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L  230 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF  230 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            7888889999999999999999999999999999999765 46777777 699999999995444449999999999999


Q ss_pred             cCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          245 TSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       245 ~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      +............|+++.|+.++.++    ...++.+|.+|+.....+...+...|+++.|+.++.+.++.++..|+.+|
T Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV  310 (528)
T ss_dssp             HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence            99765555566789999999999554    67899999999998776654443379999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhcC
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~  368 (372)
                      .+++.+++.....+++.|+++.|+.++.++ ++.++..|+++|.++...
T Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~  359 (528)
T 4b8j_A          311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG  359 (528)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence            999998889999999999999999999998 999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=1.7e-26  Score=224.33  Aligned_cols=275  Identities=17%  Similarity=0.162  Sum_probs=242.3

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.|+..|.+. ++++++..|++.|.+++..+++++..+++.|+++.|+.+|.  +.++++++.|+++|.+++.+ +.+
T Consensus       131 ~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          131 VVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             CHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccc
Confidence            457788888764 37899999999999999988889999999999999999999  78899999999999999987 567


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +..+...|+++.|+.+|.+.+..++..++++|.+|+... ........ .++++.|+.++.+.+. .++..|+++|.+|+
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDT-ETLVDACWAISYLS  285 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHH
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence            778888999999999999999999999999999999775 44444444 6999999999998876 99999999999999


Q ss_pred             CCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          246 SFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       246 ~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      ... +....+++.|+++.|+.++.++    ++.++.+|.+++... .....+.. .|+++.|+.++.+.++.++..|+++
T Consensus       286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~a  364 (530)
T 1wa5_B          286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWT  364 (530)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHH
Confidence            864 5677888999999999999654    678999999999764 44555565 7999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      |.+++.++++....+++.|+++.|+.++.+++++++..|.++|.++...
T Consensus       365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            9999988888888899999999999999999999999999999988653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.2e-27  Score=207.12  Aligned_cols=233  Identities=19%  Similarity=0.240  Sum_probs=207.5

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-c
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-D  164 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~  164 (372)
                      ....+.++..|.++  +++++..|++.|.++...+++++..+.+.|+++.|+++|+  +.+++++..|+.+|.+++.+ +
T Consensus        11 ~~~~~~~~~~L~s~--~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~   86 (252)
T 4db8_A           11 GSELPQMTQQLNSD--DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGN   86 (252)
T ss_dssp             TCSHHHHHHHHHSS--CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCH
T ss_pred             cchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCH
Confidence            44568899999886  8899999999998766657778999999999999999999  77899999999999999984 7


Q ss_pred             cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          165 DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       165 ~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      +++..+.+.|+++.|+.+|++++.+++..|+++|.+++..++++ ..+.. .|+++.|+.++++++. .++..|+++|++
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~-~v~~~a~~~L~~  164 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSN  164 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCH-HHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999988887 66777 7999999999998876 999999999999


Q ss_pred             hcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402          244 LTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       244 L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                      |+..+ +.+..+++.|+++.|+.++.++    ++.++.+|.+|+. .+..+..+.+ .|+++.|+.++.++++.+++.|+
T Consensus       165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~  243 (252)
T 4db8_A          165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQ  243 (252)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHH
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHH
Confidence            99855 6777888999999999999654    7889999999996 4556666776 89999999999999999999999


Q ss_pred             HHHHHHhc
Q 017402          318 FTLSCLCC  325 (372)
Q Consensus       318 ~~L~~l~~  325 (372)
                      .+|.+++.
T Consensus       244 ~~L~~l~~  251 (252)
T 4db8_A          244 EALEKLQS  251 (252)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHHHhc
Confidence            99999875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.3e-27  Score=206.99  Aligned_cols=232  Identities=22%  Similarity=0.276  Sum_probs=209.4

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccch
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNK  208 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~  208 (372)
                      ...+.+++.|.  +++++++..|+.+|.++ +.+++++..+.+.|+++.|+.+|++++.+++..|+++|.+++. .++++
T Consensus        12 ~~~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            56899999999  89999999999999774 4457778889999999999999999999999999999999998 45778


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      ..+.. .|+++.|+.++++++. .++..|+++|+||+.+++++ ..+++.|+++.|++++.++    ++.++.+|.+|+.
T Consensus        90 ~~i~~-~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A           90 QAVID-AGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHH-TTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-cCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            88887 7999999999999876 99999999999999999888 8899999999999999654    7889999999998


Q ss_pred             CH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          284 CK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       284 ~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      .. ..+..+.. .|+++.|+.++.+.++.+++.|+.+|.+++..+++.+..+.+.|+++.|+.+++++++++|+.|.++|
T Consensus       168 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L  246 (252)
T 4db8_A          168 GGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL  246 (252)
T ss_dssp             SCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred             CChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            55 44555566 89999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHHhc
Q 017402          363 QTLSG  367 (372)
Q Consensus       363 ~~l~~  367 (372)
                      .+|..
T Consensus       247 ~~l~~  251 (252)
T 4db8_A          247 EKLQS  251 (252)
T ss_dssp             HTTC-
T ss_pred             HHHhc
Confidence            98865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=8.2e-26  Score=214.63  Aligned_cols=274  Identities=16%  Similarity=0.150  Sum_probs=239.6

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~  165 (372)
                      ...|.+++.|.++ +++++|..|++.|.+++..++++...+.+.|+++.|+++|+  +.++++++.|+.+|.+++.+ ++
T Consensus        64 ~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~  140 (450)
T 2jdq_A           64 GVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTM  140 (450)
T ss_dssp             THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHH
Confidence            3457788888764 37899999999999999988888888999999999999999  78999999999999999987 45


Q ss_pred             ccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccc-c-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          166 NKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVE-V-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~-~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .+..+.+.|+++.|+.++.+ .+..++..++++|.+++... . .+..+.  .++++.|+.++++++. .++..++++|.
T Consensus       141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~-~v~~~a~~~L~  217 (450)
T 2jdq_A          141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDT-DVLADACWALS  217 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCH-HHHHHHHHHHH
Confidence            77778889999999999986 68999999999999999764 2 233333  5899999999998777 99999999999


Q ss_pred             hhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHH-HHHhccchHHHHHHHHhcCChhHHHhH
Q 017402          243 ALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGRE-EMMRVSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       243 ~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~-~i~~~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      +|+... +.+..+++.|+++.|+.++.++    ++.++.+|.+++...+... .+.. .|+++.|+.++.+.++.++..|
T Consensus       218 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a  296 (450)
T 2jdq_A          218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEA  296 (450)
T ss_dssp             HHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHH
Confidence            999865 5777888999999999999544    6789999999998765544 4555 7999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +++|.+++.++++..+.+++.|+++.|+.+++++++++|..|+++|.++..
T Consensus       297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            999999998888888889999999999999999999999999999998864

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=1.4e-26  Score=202.63  Aligned_cols=232  Identities=23%  Similarity=0.312  Sum_probs=209.0

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~  167 (372)
                      .|.++..|.++  +++++..|++.|.+++..+++++..+.+.|+++.|+++|+  +.+.+++..++.+|.+++.+ ++++
T Consensus         4 i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            4 VEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCChHHH
Confidence            36788999876  6899999999999999988889999999999999999999  78899999999999999988 8888


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..+.+.|+++.++.+|++++.+++..|+++|.+++. .++++..+.. .|+++.|++++++.+. .++..|+++|+||+.
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDS-EVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHc
Confidence            899999999999999999999999999999999994 5577777877 7999999999998877 999999999999998


Q ss_pred             CC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          247 FP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       247 ~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      .. +.+..+++.|+++.|+.++.++    +..++.+|.+|+.. +..+..+.+ .|+++.|++++.++++.+++.|+.+|
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L  236 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRAL  236 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence            55 4667888999999999999654    77899999999984 555566666 89999999999999999999999999


Q ss_pred             HHHhcCC
Q 017402          321 SCLCCCS  327 (372)
Q Consensus       321 ~~l~~~~  327 (372)
                      .+++...
T Consensus       237 ~~l~~~~  243 (252)
T 4hxt_A          237 ENIKSGG  243 (252)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            9999764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=8.3e-26  Score=219.42  Aligned_cols=275  Identities=17%  Similarity=0.162  Sum_probs=240.1

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCC-ChhHHHHHHHHHhcCCCC-
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSD-GFTLQEKALSLLLNLSLD-  163 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~~~a~~~L~~l~~~-  163 (372)
                      ...+.++..|.++  +++++..|+..|+++.... ......+++.|+++.|+.+|.  +. ++.++..|+++|.+++.+ 
T Consensus        87 ~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~--~~~~~~v~~~A~~~L~~l~~~~  162 (530)
T 1wa5_B           87 QELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR--ENQPEMLQLEAAWALTNIASGT  162 (530)
T ss_dssp             CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS--TTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCCC
Confidence            3457899999865  7899999999999997542 345678889999999999998  55 889999999999999986 


Q ss_pred             ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      ++.+..+++.|+++.|+.+|++++.+++..|+++|.+++... +++..+.. .|+++.|+.++.+.+. .++..|+++|+
T Consensus       163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~-~v~~~a~~~L~  240 (530)
T 1wa5_B          163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKP-SLIRTATWTLS  240 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccCCH-HHHHHHHHHHH
Confidence            556777888999999999999999999999999999999764 56777776 6999999999998665 89999999999


Q ss_pred             hhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhH
Q 017402          243 ALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       243 ~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      +|+... .........|+++.|+.++.++    ...++.+|.+|+... +....+.. .|+++.|+.++.+.++.++..|
T Consensus       241 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a  319 (530)
T 1wa5_B          241 NLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPA  319 (530)
T ss_dssp             HHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHH
Confidence            999876 5556667789999999999554    678999999999864 45566666 7999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +.+|.+++.++++....+++.|+++.|+.++.++++.++..|.++|.++..+
T Consensus       320 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG  371 (530)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999998888888899999999999999999999999999999998754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=4.9e-25  Score=209.26  Aligned_cols=272  Identities=15%  Similarity=0.150  Sum_probs=235.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc--cc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD--DN  166 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~--~~  166 (372)
                      .|.++.+|.++  ++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.+ +.+.+++..++++|.+++.+.  ..
T Consensus       109 i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          109 VPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            46788888865  88999999999999999888899999999999999999983 267899999999999998764  33


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +..+. .|+++.|+.++++++..++..++++|.+++... +....+.. .|+++.|+.++.+.+. .++..|+++|.+++
T Consensus       186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~  262 (450)
T 2jdq_A          186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDY-KVVSPALRAVGNIV  262 (450)
T ss_dssp             CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCH-HHHHHHHHHHHHHT
T ss_pred             CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCch-hHHHHHHHHHHHHh
Confidence            33333 899999999999999999999999999999765 44555555 6999999999997766 99999999999999


Q ss_pred             CCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          246 SFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       246 ~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      ...+ ....+++.|+++.|+.++.++    +..++.+|.+++. .+.....+.+ .|+++.|+.++.++++.++..|+++
T Consensus       263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8664 556678889999999999654    7789999999997 5566666776 7899999999999999999999999


Q ss_pred             HHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          320 LSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       320 L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      |.+++.. +++..+.+++.|+++.|+.++++++++++..|.++|.++..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999975 57888888899999999999999999999999999987753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=2.3e-25  Score=215.95  Aligned_cols=275  Identities=17%  Similarity=0.216  Sum_probs=234.5

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      ...|.++.+|.++  ++++|..|+..|.+++.+ +.++..+.+ .|+++.|+++|.+ +.+.+++..++.+|.+|+.+++
T Consensus        17 ~~i~~Lv~lL~~~--~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~   92 (529)
T 1jdh_A           17 RAIPELTKLLNDE--DQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             CHHHHHHHHHTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hhHHHHHHHhCCC--CHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch
Confidence            3357899999865  899999999999999985 457777765 4899999999983 2488999999999999999988


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      ++..+.+.|+++.|+++|++++++++..|+++|.+++..+ +.+..+.+ .|+++.|+.++++++. +++..++.+|.++
T Consensus        93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~-~~~~~~~~~L~~l  170 (529)
T 1jdh_A           93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCH-HHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875 55666666 7999999999998776 8899999999999


Q ss_pred             cCC-CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHH------------------
Q 017402          245 TSF-PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGV------------------  300 (372)
Q Consensus       245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~------------------  300 (372)
                      +.. ++++..+++.|+++.|++++.++     .+.+..+|.+|+.+++.+..+.. .|+++.                  
T Consensus       171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~  249 (529)
T 1jdh_A          171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLW  249 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHH
Confidence            974 67888999999999999999654     45678889999998888887776 455544                  


Q ss_pred             ---------------------HHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHH
Q 017402          301 ---------------------FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRN  357 (372)
Q Consensus       301 ---------------------L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~  357 (372)
                                           |++++.+.++.+++.|+++|.+++.++++.+..+.+.|+++.|+.++.+.  ++.++..
T Consensus       250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~  329 (529)
T 1jdh_A          250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  329 (529)
T ss_dssp             HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence                                 44555556778888899999999988888999999999999999999863  4799999


Q ss_pred             HHHHHHHHhcC
Q 017402          358 ANNLIQTLSGN  368 (372)
Q Consensus       358 a~~~L~~l~~~  368 (372)
                      |.++|.+|..+
T Consensus       330 a~~~L~nl~~~  340 (529)
T 1jdh_A          330 AICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHTSS
T ss_pred             HHHHHHHHHcC
Confidence            99999998754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=220.71  Aligned_cols=277  Identities=17%  Similarity=0.211  Sum_probs=237.8

Q ss_pred             CCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 017402           85 ANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD  163 (372)
Q Consensus        85 ~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~  163 (372)
                      .....|.|+.+|.+.  ++.+|..|+..|.+++.+.+ ++..+... |+++.|+++|.+ +.+.+++..|+.+|.+|+.+
T Consensus        12 ~~g~i~~Lv~lL~~~--~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~   87 (644)
T 2z6h_A           12 ATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH   87 (644)
T ss_dssp             CTTTHHHHHHHHTCS--CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS
T ss_pred             hhchHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC
Confidence            344568899999865  88999999999999998654 77777654 899999999983 24889999999999999999


Q ss_pred             ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      ++++..+.+.|+++.|+++|+++++.++..|+++|.+++... ..+..+.. .|+++.|+.+|++.+. +++..++.+|.
T Consensus        88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~-~~~~~a~~~L~  165 (644)
T 2z6h_A           88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQ  165 (644)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCH-HHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCH-HHHHHHHHHHH
Confidence            889999999999999999999999999999999999999875 45556666 6999999999998876 88888999999


Q ss_pred             hhcC-CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHH-------------
Q 017402          243 ALTS-FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVK-------------  303 (372)
Q Consensus       243 ~L~~-~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~-------------  303 (372)
                      +|+. +++++..+++.|+++.|++++.++     .+.++.+|.+|+.++..+..++. .|+++.|+.             
T Consensus       166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a  244 (644)
T 2z6h_A          166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNC  244 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHH
Confidence            9997 678999999999999999999654     56789999999999999888887 566665544             


Q ss_pred             --------------------------HHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHH
Q 017402          304 --------------------------MLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVR  355 (372)
Q Consensus       304 --------------------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~  355 (372)
                                                ++.+.++.+++.|+++|.+++..+++.+..+.+.|+++.|+.++.+.  .+.++
T Consensus       245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~  324 (644)
T 2z6h_A          245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  324 (644)
T ss_dssp             HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence                                      44556677888888999999888788899999999999999999874  37999


Q ss_pred             HHHHHHHHHHhcC
Q 017402          356 RNANNLIQTLSGN  368 (372)
Q Consensus       356 ~~a~~~L~~l~~~  368 (372)
                      ..|.++|.+|...
T Consensus       325 ~~a~~aL~nL~~~  337 (644)
T 2z6h_A          325 EPAICALRHLTSR  337 (644)
T ss_dssp             HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.94  E-value=4.4e-26  Score=194.65  Aligned_cols=195  Identities=17%  Similarity=0.194  Sum_probs=170.9

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-c
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-D  164 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~  164 (372)
                      ....|.++++|.+++...+++..|++.|.+++..+++++..+++.|+||.|+++|+  ++++++++.|+++|.||+.+ +
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~--s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK--VQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCH
Confidence            44568899999887333388999999999999989999999999999999999999  78999999999999999985 8


Q ss_pred             cccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh---cC------------
Q 017402          165 DNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ---NG------------  228 (372)
Q Consensus       165 ~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~---~~------------  228 (372)
                      +++..|.+.|+|+.|+++|++ ++.++++.|+.+|++|+..+++|..|..  ++|++|+.++.   ++            
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccccc
Confidence            899999999999999999984 7999999999999999999999999987  57999998763   11            


Q ss_pred             CchHHHHHHHHHHHhhcCC-CchhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCC
Q 017402          229 KLIREKKEAATALYALTSF-PENRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKC  284 (372)
Q Consensus       229 ~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~  284 (372)
                      .+..++.+|+.+|+||+.. +++|..+.+. |+|+.|+.+++++          +|+|+.+|.||+..
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            1348999999999999985 4899999987 6789999999542          68999999999863

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=3.6e-25  Score=214.58  Aligned_cols=275  Identities=19%  Similarity=0.188  Sum_probs=235.9

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~  167 (372)
                      .+.+++.|.++ .+++++..|+..|.+++.. ++++..+.+.|+++.|+++|+  +++++++..|+.+|.+++.+ ++.+
T Consensus        61 i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           61 VSAIVRTMQNT-NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchH
Confidence            46788888764 4789999999999999984 569999999999999999999  78899999999999999987 5667


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..+.+.|+++.|+++|++++.+++..++.+|.+++.. ++++..+.. .|+++.|+.++++.++...+..++.+|++|+.
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            7788899999999999999999999999999999975 477888887 69999999999988765777889999999999


Q ss_pred             CCchhHHHHhcCchHHHHHHHhh---------------------------------------h----HHHHHHHHHHHhC
Q 017402          247 FPENRKRVVSCGAVPILMRLADA---------------------------------------G----LERAVEVLSILVK  283 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~---------------------------------------~----~e~a~~~L~~L~~  283 (372)
                      +++++..+++.|+++.|+.++.+                                       +    ++.++.+|++|+.
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~  295 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            99999999999988887766522                                       1    4557788888877


Q ss_pred             C-HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHH---HHHHHHhcChhHHHHHHhhccc-HHHHH
Q 017402          284 C-KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQE---ICGDSRKEGVLDICMGLLEDDN-EKVRR  356 (372)
Q Consensus       284 ~-~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~~~~l~~ll~~~~-~~v~~  356 (372)
                      . ++.+..+.+ .|+++.|++++.+.  ++.+++.|+.+|++++..+++   .+..+.+.|+++.|+.++++++ +.+++
T Consensus       296 ~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~  374 (529)
T 1jdh_A          296 NNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK  374 (529)
T ss_dssp             TCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred             CCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence            5 457777777 78999999999763  378999999999999986543   5778999999999999999876 69999


Q ss_pred             HHHHHHHHHhcCC
Q 017402          357 NANNLIQTLSGNP  369 (372)
Q Consensus       357 ~a~~~L~~l~~~~  369 (372)
                      .|.++|.++..+.
T Consensus       375 ~a~~~l~nl~~~~  387 (529)
T 1jdh_A          375 ATVGLIRNLALCP  387 (529)
T ss_dssp             HHHHHHHHHTTSG
T ss_pred             HHHHHHHHHhcCh
Confidence            9999999988654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=216.26  Aligned_cols=275  Identities=19%  Similarity=0.183  Sum_probs=235.0

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~  167 (372)
                      .+.++..|.++ .+++++..|+..|.+++.. ++++..+.+.|+++.|+++|+  +.++.++..|+.+|.+++.+ +..+
T Consensus        58 i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           58 VSAIVRTMQNT-NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHSC-CCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhH
Confidence            46788888764 4789999999999999985 569999999999999999999  78899999999999999877 4566


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..+.+.|+++.|+++|++++..++..++.+|.+++. +++++..+.. .|+++.|+.++++......+..++.+|+||+.
T Consensus       134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            777789999999999999999899999999999996 5578888888 79999999999987655788999999999999


Q ss_pred             CCchhHHHHhcCchHHHHHHHhh---------------------------------------h----HHHHHHHHHHHhC
Q 017402          247 FPENRKRVVSCGAVPILMRLADA---------------------------------------G----LERAVEVLSILVK  283 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~---------------------------------------~----~e~a~~~L~~L~~  283 (372)
                      +++++..+++.|+++.|+.++.+                                       +    ++.++.+|.+|+.
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~  292 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  292 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999998888776532                                       1    4557778888877


Q ss_pred             C-HhHHHHHHhccchHHHHHHHHhcCC--hhHHHhHHHHHHHHhcCCH---HHHHHHHhcChhHHHHHHhhccc-HHHHH
Q 017402          284 C-KEGREEMMRVSGCVGVFVKMLKTGS--SRAVQCSLFTLSCLCCCSQ---EICGDSRKEGVLDICMGLLEDDN-EKVRR  356 (372)
Q Consensus       284 ~-~~~~~~i~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~~~~l~~ll~~~~-~~v~~  356 (372)
                      . ++.+..+.+ .|+++.|+.++.+.+  +.+++.|+.+|.+|+..++   ..+..+++.|+++.|+.++.+++ +.+++
T Consensus       293 ~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~  371 (644)
T 2z6h_A          293 NNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK  371 (644)
T ss_dssp             TCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHH
T ss_pred             CCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHH
Confidence            5 456667776 789999999998743  7899999999999997644   34566888999999999999875 79999


Q ss_pred             HHHHHHHHHhcCC
Q 017402          357 NANNLIQTLSGNP  369 (372)
Q Consensus       357 ~a~~~L~~l~~~~  369 (372)
                      .|.++|.++..+.
T Consensus       372 ~a~~~L~nLa~~~  384 (644)
T 2z6h_A          372 ATVGLIRNLALCP  384 (644)
T ss_dssp             HHHHHHHHHTTSG
T ss_pred             HHHHHHHHHccCH
Confidence            9999999987654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=191.14  Aligned_cols=191  Identities=15%  Similarity=0.227  Sum_probs=168.3

Q ss_pred             CCHHHHHHHHhhcCCCh--hHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-cc
Q 017402          131 GAVSAVLNCLKIHSDGF--TLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EV  206 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~  206 (372)
                      -.++.++++|.  ++++  +++..|+.+|.+++.+ ++++..|.+.|+||.|+++|++++.+++..|+++|.||+.. ++
T Consensus         8 ~~i~~lV~lL~--s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLE--ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCC--SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhC--CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            35899999999  6666  8999999999999965 77899999999999999999999999999999999999984 58


Q ss_pred             chhhhccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh---h-------------
Q 017402          207 NKATIGDYPYAINALVSLLQN-GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD---A-------------  269 (372)
Q Consensus       207 ~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~---~-------------  269 (372)
                      ++..|.+ .|+||.|+++|++ ++. ++++.|+.+|+||+..++++..+++. ++++|+.++.   +             
T Consensus        86 nk~~I~~-~GaI~~Lv~lL~~~~~~-~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           86 NKLEVAE-LNGVPRLLQVLKQTRDL-ETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHH-TTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHH-cCCHHHHHHHHccCCCH-HHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence            9999998 7999999999986 455 89999999999999999999999874 7999988651   0             


Q ss_pred             ---h-HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcC------ChhHHHhHHHHHHHHhcC
Q 017402          270 ---G-LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTG------SSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       270 ---~-~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~  326 (372)
                         . .+++..+|+||+. ++++|+.+.+.+|+|+.|+.+++..      +.+.+++|+.+|+||++.
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence               1 5779999999987 6799999999788999999999763      557889999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=3.7e-24  Score=216.22  Aligned_cols=270  Identities=19%  Similarity=0.210  Sum_probs=236.4

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~  168 (372)
                      +.|+..|.++ .++++|..|+..|.+++. +++++..+.+.|+++.|+++|+  +.++.++..|+.+|.+|+.+ ++.+.
T Consensus       195 ~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~  270 (780)
T 2z6g_A          195 SAIVRTMQNT-NDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLG--SPVDSVLFHAITTLHNLLLHQEGAKM  270 (780)
T ss_dssp             HHHHHHHHHC-CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             HHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCChhhHH
Confidence            4577777754 478999999999999998 4668999999999999999999  78899999999999999987 56667


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      .+.+.|+++.|+.+|++++..++..++.+|.+++.. ++++..+.. .|+++.|+.++++.+.......++.+|++|+.+
T Consensus       271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            777899999999999999999999999999999864 478888887 699999999999887646777899999999999


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      ++++..+++.|+++.|+.++.++    .+.++.+|.+|+......   ....++++.|+.++.+.++.+++.|+.+|.+|
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L  426 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  426 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999554    678999999999865331   11257899999999999999999999999999


Q ss_pred             hcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhc
Q 017402          324 CCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSG  367 (372)
Q Consensus       324 ~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~  367 (372)
                      +..+++.+..+.+.|+++.|+.++.+.  .+.++..|.++|.+|..
T Consensus       427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            998889999999999999999999873  34999999999999875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=3.6e-24  Score=216.25  Aligned_cols=270  Identities=21%  Similarity=0.250  Sum_probs=235.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      |.|+.+|.+.  ++.+|..|+..|.+++.. ..++..+.+. |+++.|+++|++ +.+.+++..|+.+|.+|+.+++++.
T Consensus       153 p~Lv~lL~~~--d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~~~~~  228 (780)
T 2z6g_A          153 PELTKLLNDE--DQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLL  228 (780)
T ss_dssp             HHHHHHHHCS--CHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHCCC--CHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHH
Confidence            5678888754  889999999999999985 4577777754 899999999984 2488999999999999999988888


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-  246 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-  246 (372)
                      .+.+.|+++.|+.+|++++..++..|+++|.+++... +.+..+.. .|+++.|+.++.+.+. .++..++.+|.+++. 
T Consensus       229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~-~v~~~a~~aL~~La~~  306 (780)
T 2z6g_A          229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQILAYG  306 (780)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999999999875 45556666 6999999999998766 889999999999997 


Q ss_pred             CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402          247 FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS  321 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  321 (372)
                      +++++..+++.|+++.|+.++.++     .+.++.+|.+|+.+...+..++. .|+++.|+.++.+.++.+++.|+++|.
T Consensus       307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~  385 (780)
T 2z6g_A          307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR  385 (780)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHH
Confidence            567999999999999999999654     45689999999999999999998 799999999999989999999999999


Q ss_pred             HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      +++...+..   ....++++.|+.++.+.++++++.|+++|.+|..+.
T Consensus       386 ~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~  430 (780)
T 2z6g_A          386 NLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN  430 (780)
T ss_dssp             HHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred             HHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            999765431   122568999999999999999999999999997753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.5e-23  Score=178.41  Aligned_cols=194  Identities=23%  Similarity=0.289  Sum_probs=172.6

Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCc
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPE  249 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~  249 (372)
                      ..|+.+.|+.+|++++.+++..|+++|.+++.. ++++..+.+ .|+++.|+++|++++. .++..|+++|.|++. +++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCcH
Confidence            468899999999999999999999999999954 467777777 7999999999999877 999999999999996 557


Q ss_pred             hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      ++..+++.|+++.|+.+|+++    ++.++.+|.||+.. +..+..+.+ .|+++.|++++.++++.+++.|+.+|.+++
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            889999999999999999655    78899999999975 445556666 899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       325 ~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      ..+++.+..+.+.|+++.|+.+++++++++++.|.++|..|..+
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            98899999999999999999999999999999999999998753

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.6e-23  Score=201.68  Aligned_cols=274  Identities=15%  Similarity=0.149  Sum_probs=225.7

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcCh-------------------------------------H-HHHHHhhcCC
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDS-------------------------------------A-SRRKLTESGA  132 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-------------------------------------~-~~~~i~~~g~  132 (372)
                      .|+.+++.. .+......++..|.|++...+                                     + ++..+.+.|+
T Consensus       380 ~Lv~llk~~-~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv  458 (778)
T 3opb_A          380 ILLTMIKSQ-KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL  458 (778)
T ss_dssp             HHHHHHTTT-CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred             HHHHHHhCC-CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence            477777652 366778889999998886322                                     1 5677889999


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChH---HHHHHHHHHHHhcccccchh
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPD---CRAIAATIITSLAVVEVNKA  209 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~---~~~~a~~~L~~ls~~~~~~~  209 (372)
                      ++.|+.+++  +.++.+++.++++|.||+.++++|..+++.|+++.|+.+|.+++..   .+..|+.+|.+++...+...
T Consensus       459 Ip~Lv~Ll~--S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~  536 (778)
T 3opb_A          459 ISFLKREMH--NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL  536 (778)
T ss_dssp             HHHHHHHGG--GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999  7899999999999999999999999999999999999999887544   89999999999986655444


Q ss_pred             hhcc--ccchHHHHHHHhhc-CCc-----------h-HHHHHHHHHHHhhcCCCc-----hhHHHHhc-CchHHHHHHHh
Q 017402          210 TIGD--YPYAINALVSLLQN-GKL-----------I-REKKEAATALYALTSFPE-----NRKRVVSC-GAVPILMRLAD  268 (372)
Q Consensus       210 ~i~~--~~g~i~~Lv~ll~~-~~~-----------~-~~~~~a~~aL~~L~~~~~-----~~~~i~~~-g~v~~L~~ll~  268 (372)
                      .+..  ..|+|++|+++|.. ...           + --+.+|+.||.||+..++     .+..+++. |+++.|..++.
T Consensus       537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~  616 (778)
T 3opb_A          537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML  616 (778)
T ss_dssp             HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred             HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence            4421  13899999999983 111           0 126799999999999873     47888885 99999999995


Q ss_pred             hh----HHHHHHHHHHHhCCHhHH-HHHHhcc-----chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc-
Q 017402          269 AG----LERAVEVLSILVKCKEGR-EEMMRVS-----GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE-  337 (372)
Q Consensus       269 ~~----~e~a~~~L~~L~~~~~~~-~~i~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-  337 (372)
                      ++    ++.|+.+++||+.+++++ +.+....     +.++.|+.++..++...++.|.++|.+++..++..+..+++. 
T Consensus       617 s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~  696 (778)
T 3opb_A          617 DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKK  696 (778)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence            44    778999999999998886 3554311     248899999999999999999999999987778888888887 


Q ss_pred             ChhHHHHHHhhc--ccHHHHHHHHHHHHHHhc
Q 017402          338 GVLDICMGLLED--DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       338 g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~  367 (372)
                      |+++.+++++++  ++++++..+..++.+|.+
T Consensus       697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            799999999999  899999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=4.6e-23  Score=175.50  Aligned_cols=191  Identities=21%  Similarity=0.227  Sum_probs=170.3

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      .++.++.+|.+.  +++++..|++.|.+++..+++++..+.+.|+++.|+++|+  +.+++++..|+++|.+++.+ +++
T Consensus        13 ~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           13 ELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHH
Confidence            346688888765  8999999999999999888999999999999999999999  78999999999999999965 677


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      +..+.+.|+++.|+.+|++++..++..|+++|.+++..+ +.+..+.+ .|+++.|+.++++++. .++..|+++|.||+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~  166 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCH-HHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999999755 44555666 7999999999998876 99999999999999


Q ss_pred             CC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          246 SF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       246 ~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                      .. ++++..+++.|+++.|++++.++    ++.|+.+|.+|+.+
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            87 57888899999999999999654    78899999999863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.9e-22  Score=193.73  Aligned_cols=271  Identities=15%  Similarity=0.139  Sum_probs=221.5

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---  165 (372)
                      +.++..|.++  +.+.+..|++.|..++. +++.|+.+++. |.++.|+++++. ..+..+.+.++.+|.||+...+   
T Consensus       337 ~~~~~~L~~~--~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          337 EIFINAISRR--IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHTTTC--CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHhcC--CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccc
Confidence            3455666654  45568999999999998 66789999875 779999999983 2677899999999999986421   


Q ss_pred             ------------------------------------ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402          166 ------------------------------------NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA  209 (372)
Q Consensus       166 ------------------------------------~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~  209 (372)
                                                          ++..+.+.|+++.|+.+++++++.++..++++|.+|+.+.++|.
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~  492 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP  492 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                34567789999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHhhcCCch--HHHHHHHHHHHhhcCCCchhHHHH--h-cCchHHHHHHHhh--h------------
Q 017402          210 TIGDYPYAINALVSLLQNGKLI--REKKEAATALYALTSFPENRKRVV--S-CGAVPILMRLADA--G------------  270 (372)
Q Consensus       210 ~i~~~~g~i~~Lv~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~i~--~-~g~v~~L~~ll~~--~------------  270 (372)
                      .+++ .|+++.|+.++.+....  ..+..|+.+|.+|....+....+-  . .|+|++|+.+|..  +            
T Consensus       493 ~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          493 QLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9998 79999999999987651  389999999999986554333331  1 3899999999962  1            


Q ss_pred             ----HHHHHHHHHHHhCCH-----hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH-HHHHh----
Q 017402          271 ----LERAVEVLSILVKCK-----EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC-GDSRK----  336 (372)
Q Consensus       271 ----~e~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~----  336 (372)
                          .-.|+.+|.||+..+     +.|..++.+.|+++.|..++.+.++.+++.|+.++.|++.. ++.. +.+..    
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~  650 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENP  650 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCc
Confidence                236999999999975     34777888458999999999999999999999999999975 6654 34432    


Q ss_pred             --cChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          337 --EGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       337 --~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                        .+.++.|+.++++++.++|++|.++|.++.
T Consensus       651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence              234889999999999999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=1e-21  Score=174.75  Aligned_cols=221  Identities=19%  Similarity=0.170  Sum_probs=181.9

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALV  222 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv  222 (372)
                      .+.+-+..|+..|.++..+.++...+.+.|+++.|+. +|++++++++..|+++|.+++.++ ..+..+.+ .|+++.|+
T Consensus        52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll  130 (296)
T 1xqr_A           52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHH
Confidence            3456788999999999998888888999999999999 999999999999999999999866 56777777 79999999


Q ss_pred             HHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccc
Q 017402          223 SLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSG  296 (372)
Q Consensus       223 ~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g  296 (372)
                      .+|++..+..+++.|+++|+|++.+. +....+++.|+++.|+.+|.++    +..++++|++|+.. ++.+..+++ .|
T Consensus       131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g  209 (296)
T 1xqr_A          131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MG  209 (296)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TT
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cC
Confidence            99997533489999999999999855 5677888999999999999665    67899999999875 556777777 89


Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--ChhHH---HHHHhh-c-ccHHHHHHHHHHHHHHhc
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDI---CMGLLE-D-DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~~~~---l~~ll~-~-~~~~v~~~a~~~L~~l~~  367 (372)
                      +++.|+.+|.+.++.+++.|+.+|.+|+...+.........  .....   ..+-++ . .+.++.++|..++..+..
T Consensus       210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998866555444332  22222   233333 2 367889999999987764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=2.2e-21  Score=172.70  Aligned_cols=178  Identities=18%  Similarity=0.185  Sum_probs=159.4

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHH-HHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLN-CLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRV  179 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~l  179 (372)
                      +.+.+..|+..|.+++. +.+++..|.+.|+++.|+. +|.  +.+++++..|+++|.+++.+ +..+..+++.|+++.|
T Consensus        53 ~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L  129 (296)
T 1xqr_A           53 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  129 (296)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            56789999999999998 5569999999999999999 999  78999999999999999877 5678889999999999


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHh
Q 017402          180 VAALRFG-SPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVS  256 (372)
Q Consensus       180 v~~L~~~-~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~  256 (372)
                      +.+|+++ +..++..|+++|.+++.+. +....+.. .|+++.|+.+|++++. .++..|+++|++|+. +++.+..+++
T Consensus       130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~-~v~~~A~~aLs~L~~~~~~~~~~vv~  207 (296)
T 1xqr_A          130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQ-KLKVKSAFLLQNLLVGHPEHKGTLCS  207 (296)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            9999964 8899999999999999765 44556666 6999999999999877 999999999999987 4678899999


Q ss_pred             cCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          257 CGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       257 ~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                      .|+++.|+.+|.++    ++.++.+|.+|+..
T Consensus       208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999654    88999999999987

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.78  E-value=1.1e-19  Score=133.77  Aligned_cols=73  Identities=33%  Similarity=0.511  Sum_probs=67.5

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL   77 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~   77 (372)
                      ..++++|.||||+++|+|||+++|||+||+.||.+||.. ..+||.|+.++. ..++.||..+++.++.|+..+.
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT-ESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC-TTSSEECHHHHHHHHHHHHTTT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC-hhhceECHHHHHHHHHHHHHhh
Confidence            357889999999999999999999999999999999984 678999999999 8899999999999999998753

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.78  E-value=1.3e-19  Score=129.55  Aligned_cols=71  Identities=34%  Similarity=0.527  Sum_probs=66.1

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ..++++|.||||+++|+|||+++|||+||+.||.+|+.. ..+||.|+.++. ...+.+|..++++++.|...
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~~~~   79 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT-ESMLEPVPELKEQIQAWMRE   79 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC-hHhcchHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999985 678999999999 78999999999999999864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.77  E-value=2.7e-19  Score=131.19  Aligned_cols=72  Identities=35%  Similarity=0.516  Sum_probs=67.0

Q ss_pred             CCCCCCccccCCcccCCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      ..++++|.||||+++|+|||+++|| |+||+.||.+||.. ..+||.|++++. ...+.||..+++.++.|+..+
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~   89 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHHHHHS
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC-hhhceEcHHHHHHHHHHHHHc
Confidence            4578999999999999999999999 99999999999986 678999999999 889999999999999998864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.75  E-value=3.8e-19  Score=125.81  Aligned_cols=73  Identities=51%  Similarity=1.010  Sum_probs=67.4

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      ..+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+..+. ...+.+|..++++++.|...+
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~~~~   75 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHHHHS
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999999876789999999998 788999999999999998753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=2.2e-16  Score=150.33  Aligned_cols=269  Identities=17%  Similarity=0.179  Sum_probs=212.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc--
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN--  166 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~--  166 (372)
                      +.|...|.+. +-.+.|+.|+..|+.++++   ++..++ .++++.|+..|++...|.++...++.+|.++... ++.  
T Consensus        24 ~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~   98 (651)
T 3grl_A           24 QKLCDRVASS-TLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV   98 (651)
T ss_dssp             HHHHHHHHHC-CSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhhc-cchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence            5577788764 6788999999999999873   455554 5679999999997667899999999999885433 211  


Q ss_pred             ---------------cccc-cccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcC
Q 017402          167 ---------------KVGL-VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNG  228 (372)
Q Consensus       167 ---------------~~~i-~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~  228 (372)
                                     .+.+ .+.+.|+.|+.+|+..+..+|.++...|..|+....  +++.|....++|+.|+.+|.+.
T Consensus        99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~  178 (651)
T 3grl_A           99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS  178 (651)
T ss_dssp             ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS
T ss_pred             cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc
Confidence                           1122 246889999999999999999999999999997763  5666775479999999999998


Q ss_pred             CchHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhhh--------HHHHHHHHHHHhCCH-hHHHHHHhccchH
Q 017402          229 KLIREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADAG--------LERAVEVLSILVKCK-EGREEMMRVSGCV  298 (372)
Q Consensus       229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~-~~~~~i~~~~g~i  298 (372)
                      ++ .++..|+..|.+|+.++...++++.. |+++.|+.++...        .+.|+.+|.||.++. .++..|.+ .|++
T Consensus       179 rE-~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i  256 (651)
T 3grl_A          179 RE-VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYI  256 (651)
T ss_dssp             SH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCG
T ss_pred             hH-HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCH
Confidence            88 99999999999999988877777755 9999999999432        678999999999965 46777777 7999


Q ss_pred             HHHHHHHhcCChh------HHH---hHHHHHHHHhcC------CHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHH
Q 017402          299 GVFVKMLKTGSSR------AVQ---CSLFTLSCLCCC------SQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNL  361 (372)
Q Consensus       299 ~~L~~ll~~~~~~------~~~---~a~~~L~~l~~~------~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~  361 (372)
                      +.|..++..+.+.      ...   .++.++..++..      .+.+++.+.+.|+++.|++++...  ...++..|..+
T Consensus       257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t  336 (651)
T 3grl_A          257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT  336 (651)
T ss_dssp             GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence            9999998653221      112   356666666654      236788899999999999998865  67888888888


Q ss_pred             HHHH
Q 017402          362 IQTL  365 (372)
Q Consensus       362 L~~l  365 (372)
                      +..+
T Consensus       337 la~~  340 (651)
T 3grl_A          337 VSEV  340 (651)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.72  E-value=2e-18  Score=139.36  Aligned_cols=73  Identities=37%  Similarity=0.599  Sum_probs=67.0

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      ..++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.+++ ...+.||..++++++.|+..+
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~-~~~L~pN~~Lk~~Ie~~~~~~  173 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT-QDQLIPNLAMKEVIDAFIQEN  173 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHC
T ss_pred             cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC-hhhCcchHHHHHHHHHHHHHC
Confidence            4578999999999999999999999999999999999875457999999998 889999999999999998753

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=123.66  Aligned_cols=74  Identities=31%  Similarity=0.550  Sum_probs=65.3

Q ss_pred             CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-----CCCCCC--CCCC-CCCCCCCCccHHHHHHHHHHh
Q 017402            3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-----HRTCPI--TKLP-LPDQPSLIPNHALRSLISNFT   73 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~~n~~l~~~i~~~~   73 (372)
                      +..+++|.||||+++|.|||+++ |||+||+.||.+||..+     ..+||.  |+.. +. ..++.+|..++++++.|.
T Consensus         2 ~~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            2 SSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             CSCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHH
T ss_pred             CCCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHH
Confidence            45788999999999999999996 99999999999999753     468999  7766 77 789999999999999999


Q ss_pred             cCCC
Q 017402           74 RTPL   77 (372)
Q Consensus        74 ~~~~   77 (372)
                      ....
T Consensus        81 ~~~~   84 (94)
T 2yu4_A           81 KKRH   84 (94)
T ss_dssp             TTCC
T ss_pred             HHhc
Confidence            8743

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.67  E-value=5.7e-17  Score=118.46  Aligned_cols=73  Identities=29%  Similarity=0.527  Sum_probs=65.2

Q ss_pred             CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ..+++++.||||.++|.+|++++ |||+||+.||.+|+... ...||.||..+.....+.+|..++.+++.|...
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~   82 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE   82 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence            45788999999999999999999 99999999999999753 478999999974367899999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=4.9e-17  Score=144.58  Aligned_cols=72  Identities=38%  Similarity=0.604  Sum_probs=67.0

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      .++++|.||||.++|.|||+++|||+||+.||.+|+..++.+||.|+.+++ ...+.||..++++++.|+..+
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~~~  275 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFISEN  275 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHTTC
T ss_pred             CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-hhcCcccHHHHHHHHHHHHHC
Confidence            477899999999999999999999999999999999876667999999998 889999999999999999764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.63  E-value=1.3e-14  Score=138.26  Aligned_cols=276  Identities=14%  Similarity=0.116  Sum_probs=220.6

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChH-----------------HHHHHh-hcCCHHHHHHHHhhcCCChhHH
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA-----------------SRRKLT-ESGAVSAVLNCLKIHSDGFTLQ  150 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~-~~g~i~~L~~lL~~~~~~~~~~  150 (372)
                      .+.++..|+++.+|.+....++..|.++...+++                 +.+.+. +.+.|+.|+.+|+  +.+..++
T Consensus        62 l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR  139 (651)
T 3grl_A           62 MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVR  139 (651)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHH
Confidence            3779999999888889888999999876654332                 333443 4588999999999  8899999


Q ss_pred             HHHHHHHhcCCCC--ccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402          151 EKALSLLLNLSLD--DDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN  227 (372)
Q Consensus       151 ~~a~~~L~~l~~~--~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~  227 (372)
                      ..++..|..|+.+  +..++.|.. .++++.|+.+|++....+|-.++.+|.+|+.++..-.+++...|+++.|+++++.
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence            9999999998876  336888885 6999999999999899999999999999999887777776657999999999987


Q ss_pred             CCc---hHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----------HHH---HHHHHHHHhCC------
Q 017402          228 GKL---IREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----------LER---AVEVLSILVKC------  284 (372)
Q Consensus       228 ~~~---~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----------~e~---a~~~L~~L~~~------  284 (372)
                      +..   ..+...++.+|.||...+ .|...+.|.|+++.|..+++.+          ..+   ++.++..|+..      
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~  299 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA  299 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            432   368889999999999855 5889999999999999998422          122   66777777764      


Q ss_pred             -HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHHHHHHHHhcC---------hhHHHHHHhhc-cc
Q 017402          285 -KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQEICGDSRKEG---------VLDICMGLLED-DN  351 (372)
Q Consensus       285 -~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------~~~~l~~ll~~-~~  351 (372)
                       ..++..+.+ .|++..|++++...  +..++..|+.++..+..+++.++..+.+..         ++..|+.++.+ ..
T Consensus       300 t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          300 TSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence             245667777 79999999999764  677889999999999999999988887643         44445554544 46


Q ss_pred             HHHHHHHHHHHHHHhc
Q 017402          352 EKVRRNANNLIQTLSG  367 (372)
Q Consensus       352 ~~v~~~a~~~L~~l~~  367 (372)
                      ..+|-+|..+++.+-.
T Consensus       379 ~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8889999999986543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.61  E-value=2.4e-16  Score=121.77  Aligned_cols=70  Identities=16%  Similarity=0.351  Sum_probs=62.9

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ++++.||||.+.|.+|++++|||+||+.|+.+|+..+...||.||..+.....+.+|..+..+++.|...
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            4678999999999999999999999999999999866679999999998337899999999999888753

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.56  E-value=9.2e-16  Score=121.91  Aligned_cols=70  Identities=24%  Similarity=0.422  Sum_probs=62.5

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      +++++.||||.++|.+|++++|||+||+.||.+|+..+...||.||..+.....+.+|..++.+++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            3467899999999999999999999999999999987667899999999933389999999999998874

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.55  E-value=6.4e-16  Score=114.36  Aligned_cols=70  Identities=20%  Similarity=0.404  Sum_probs=62.1

Q ss_pred             CCCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            5 FPDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      +.+++.||||++.|.+|++ ++|||+||+.||.+|+......||.||.++. ...+.++..+..+++.+...
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHHHHH
Confidence            4467899999999999999 9999999999999999876578999999998 88888898888887777655

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=5.7e-15  Score=100.47  Aligned_cols=53  Identities=19%  Similarity=0.394  Sum_probs=48.5

Q ss_pred             CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ...+++++.||||++.+.+|++++|||+||+.|+.+|+..+...||.||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            45678899999999999999999999999999999999766778999999887

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-16  Score=112.43  Aligned_cols=64  Identities=27%  Similarity=0.567  Sum_probs=55.1

Q ss_pred             CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC------CCCCCCCCCCCCCCCCCCccHHHH
Q 017402            2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG------HRTCPITKLPLPDQPSLIPNHALR   66 (372)
Q Consensus         2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~------~~~CP~c~~~~~~~~~~~~n~~l~   66 (372)
                      .+.+++++.||||++.|.+|++++|||+||+.|+.+|+...      ...||.||..+. ..++.+|..++
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~   75 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS-FEHLQANQHLA   75 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC-SSGGGTCSSSC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC-HhhCCcCHHHH
Confidence            45678899999999999999999999999999999999753      568999999998 66777776544

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.52  E-value=3.4e-15  Score=110.46  Aligned_cols=68  Identities=22%  Similarity=0.486  Sum_probs=61.7

Q ss_pred             CCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            6 PDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ++++.||||.+.|.+|+++ +|||+||+.|+.+|+.. ...||.||..+. ..++.+|..++++++.+...
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~~i~~~~~~   88 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVT-EPDLKNNRILDELVKSLNFA   88 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCC-hhhCCcCHHHHHHHHHHHHH
Confidence            3568999999999999998 89999999999999985 578999999998 78899999999999999775

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.51  E-value=4e-15  Score=113.72  Aligned_cols=73  Identities=22%  Similarity=0.463  Sum_probs=64.4

Q ss_pred             CCCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      |...+++++.||||++.+.+|++++|||+||+.|+.+|+..+...||.||.++. ...+.++..+++.+..+..
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~i~~l~v   83 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV   83 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred             hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC-HHhcccCHHHHHHHcccee
Confidence            346688899999999999999999999999999999999876668999999998 7778899999888877654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.51  E-value=7.8e-15  Score=102.12  Aligned_cols=60  Identities=25%  Similarity=0.455  Sum_probs=49.9

Q ss_pred             CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcc
Q 017402            3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n   62 (372)
                      ..+++++.||||++.|.+|++++ |||+||+.||.+|+... ...||.||..+.....+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            45778899999999999999999 99999999999999753 36899999986634444443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.50  E-value=2.2e-15  Score=108.40  Aligned_cols=63  Identities=32%  Similarity=0.662  Sum_probs=54.6

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC-----CCCCCCCCCCCCCCCCCCccHHHH
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-----HRTCPITKLPLPDQPSLIPNHALR   66 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-----~~~CP~c~~~~~~~~~~~~n~~l~   66 (372)
                      +.+.+++.||||.+.+.+|++++|||+||+.|+.+|+...     ...||.||..+. ...+.+|..++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~   81 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP-FGNLKPNLHVA   81 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC-TTCCEECSCCC
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC-HHhCCcCHHHH
Confidence            4567889999999999999999999999999999999863     568999999998 77777776544

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.8e-15  Score=125.75  Aligned_cols=71  Identities=21%  Similarity=0.362  Sum_probs=63.4

Q ss_pred             CCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcC-CCCCCC--CCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            4 QFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSG-HRTCPI--TKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~-~~~CP~--c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      ....+++||||+++|++||+. .|||+||+.||.+||..+ ...||+  |++.+. ..++.+|..++++++.|...
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHHHHH
Confidence            356789999999999999985 899999999999999763 468999  999998 88999999999999988763

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.49  E-value=9.4e-15  Score=109.89  Aligned_cols=68  Identities=16%  Similarity=0.441  Sum_probs=60.0

Q ss_pred             CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHhc
Q 017402            5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQP----SLIPNHALRSLISNFTR   74 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~   74 (372)
                      +++++.||||.+.|.+|+++ +|||+||+.|+.+|+.. ...||.|+..+. ..    .+.+|..+..+++.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVH-KTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSC-SSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccc-ccCcccccCcCHHHHHHHHHHhh
Confidence            46789999999999999997 99999999999999986 478999999988 44    67889999998887764

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.3e-14  Score=98.45  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=50.0

Q ss_pred             CCCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402            3 TQFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n   62 (372)
                      +.+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.||..+. ..++..+
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~   68 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH-QTQPLSG   68 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCC-SSCSCCC
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccC-ccccccc
Confidence            4567889999999999999997 89999999999999976 678999999988 5555443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.47  E-value=3.7e-15  Score=113.52  Aligned_cols=70  Identities=21%  Similarity=0.426  Sum_probs=59.0

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCC------CCCCCccHHHHHHHHHHh
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD------QPSLIPNHALRSLISNFT   73 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~------~~~~~~n~~l~~~i~~~~   73 (372)
                      ...+++.||||.+.+.+|++++|||+||+.|+.+|+..+...||.||..+..      ...+..|..+..++..+.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            4556799999999999999999999999999999998767899999998861      145667788888777765

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.47  E-value=9.6e-15  Score=118.70  Aligned_cols=71  Identities=27%  Similarity=0.509  Sum_probs=61.9

Q ss_pred             CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      +.+++.||||++.|.+|+++ +|||+||+.|+.+|+..+...||.||..+.....+.+|..+..++..+...
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            44567999999999999987 999999999999999976788999999986467789999999999988654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.4e-15  Score=107.33  Aligned_cols=63  Identities=25%  Similarity=0.660  Sum_probs=54.5

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc-----CCCCCCCCCCCCCCCCCCCccHHHH
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-----GHRTCPITKLPLPDQPSLIPNHALR   66 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-----~~~~CP~c~~~~~~~~~~~~n~~l~   66 (372)
                      ..+++.+.||||.+.+.+|++++|||+||+.|+..|+..     +...||.||..+. ..++.+|..++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~   81 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-PENIRPNRHVA   81 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC-SSSCCCSCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC-HHhcCccHHHH
Confidence            457788999999999999999999999999999999975     3678999999998 77777776544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.2e-14  Score=98.34  Aligned_cols=55  Identities=27%  Similarity=0.643  Sum_probs=48.2

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPS   58 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~   58 (372)
                      ..+++++.||||++.+.+|++++|||+||+.|+.+|+..  +...||.||..+. ..+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~   71 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR-KNA   71 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC-CCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC-ccc
Confidence            457788999999999999999999999999999999973  4568999999887 443

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.46  E-value=1e-14  Score=111.29  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=61.0

Q ss_pred             CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402            5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT   75 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~   75 (372)
                      +.+++.||||.++|.+|+++ +|||+||+.||.+|+.   ..||.|+..+. ..++.+|..+..+++.+...
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHHHHH
Confidence            34679999999999999999 9999999999999986   67999999998 88999999999999888764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.44  E-value=2.6e-14  Score=112.37  Aligned_cols=64  Identities=22%  Similarity=0.474  Sum_probs=51.7

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHh
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFT   73 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~   73 (372)
                      ++++.||||.+.|.+||+++|||+||..|+.+|+.. ..+||.||.++. .  ...+..+...+..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~--~~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIK-S--KTYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCC-C--EEECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCC-C--CCCccchhHHHHHHH
Confidence            356889999999999999999999999999999975 678999999887 2  234555555555544

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.7e-14  Score=94.19  Aligned_cols=47  Identities=30%  Similarity=0.717  Sum_probs=42.4

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPIT   49 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c   49 (372)
                      ..+++++.||||++.+.+|++++|||+||+.|+.+|+..  +...||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            457789999999999999999999999999999999975  45689987

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1e-13  Score=98.40  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHH
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALR   66 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~   66 (372)
                      ...+.+.||||++.+.+|++++|||+||+.|+.+|+.. ...||.||..+.  ..+.+|..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~   70 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELM   70 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHH
Confidence            45678999999999999999999999999999999975 678999999886  5667775443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.42  E-value=6.4e-14  Score=94.91  Aligned_cols=55  Identities=24%  Similarity=0.454  Sum_probs=47.9

Q ss_pred             CCccccCCcc-cCCCc----eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402            7 DDFKCPISLE-IMSDP----VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         7 ~~~~C~ic~~-~~~~P----v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n   62 (372)
                      +++.||||++ .+.+|    ++++|||+||+.|+.+|+..+...||.||..+. ..++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS-SCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc-cccceee
Confidence            5789999999 99999    468999999999999999876778999999998 6666554

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.42  E-value=2.9e-14  Score=108.11  Aligned_cols=68  Identities=24%  Similarity=0.516  Sum_probs=56.8

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      .+.+.||||.+.+.+|++++|||+||+.|+.+|+...  ...||.|+..+. ...+.+|..+..+++.+..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC-HhhcCccHHHHHHHHHHHH
Confidence            3568899999999999999999999999999999853  358999999998 7778777666666655543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.40  E-value=3.9e-14  Score=107.98  Aligned_cols=69  Identities=28%  Similarity=0.461  Sum_probs=56.6

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CccHHHHHHHHHHhc
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL-IPNHALRSLISNFTR   74 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~-~~n~~l~~~i~~~~~   74 (372)
                      +++++.||||.+.+.+|++++|||+||+.|+.+|+..+...||.||..+. ..++ .++..+..++..+..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~l~~~i~~l~v   89 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF-PTDLESPVKSFLNILNSLMV   89 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCBCCCHHHHHHHHHCEE
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC-HhhccccHHHHHHHHHHhcC
Confidence            34578999999999999999999999999999999876778999999988 5444 456666666655543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.39  E-value=7.8e-14  Score=113.92  Aligned_cols=73  Identities=22%  Similarity=0.463  Sum_probs=63.8

Q ss_pred             CCCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      |...+++++.||||.++|.+||+++|||+||+.|+.+|+..+..+||.||..+. ...+.++..+.+.+..+..
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~~~~i~~l~v   83 (170)
T 3hcs_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV   83 (170)
T ss_dssp             ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred             hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc-hhhhhhhHHHHHHHhhccc
Confidence            345788999999999999999999999999999999999876669999999998 7778889888887776543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.38  E-value=7e-14  Score=92.44  Aligned_cols=54  Identities=22%  Similarity=0.432  Sum_probs=48.0

Q ss_pred             CccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccH
Q 017402            8 DFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH   63 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~   63 (372)
                      .|.||||+++|.|||+. +|||+||+.||++|+.. +.+||.+++++. ..++.+++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~-~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS-IEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC-GGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC-hhhcEECc
Confidence            58999999999999999 89999999999999986 356999999998 77887764

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.38  E-value=1.9e-14  Score=112.93  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=58.3

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHhc
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD--------QPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~--------~~~~~~n~~l~~~i~~~~~   74 (372)
                      +.+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.||.++..        ...+.++..+++.+..+..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v  105 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA  105 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence            45778999999999999999999999999999999998766789999986531        1234577878777765443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.38  E-value=3.4e-11  Score=101.82  Aligned_cols=185  Identities=22%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      ..+.++.|+..|.  +.+..++..|+..|..+..          .+.++.|+.+|.+++..++..++.+|..+.      
T Consensus        17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------   78 (211)
T ss_dssp             CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC------
T ss_pred             CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence            3467999999999  8899999999999987642          467899999999999999999999998874      


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                          . .++++.|+.++.+++. .++..|+.+|..+..          .+.++.|+.++.++    +..++.+|..+.. 
T Consensus        79 ----~-~~~~~~L~~~l~~~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           79 ----D-ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             ----C-GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             ----C-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                2 4689999999988777 999999999998853          35788999999554    5678888887743 


Q ss_pred             HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       285 ~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                                ...++.|..++.+.++.++..|+.+|..+..           ..+++.|..+++++++.||..|..+|..
T Consensus       142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                      4589999999988999999999999998842           3367889999999999999999999998


Q ss_pred             HhcCC
Q 017402          365 LSGNP  369 (372)
Q Consensus       365 l~~~~  369 (372)
                      +..+.
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            87654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.37  E-value=5.2e-11  Score=105.37  Aligned_cols=219  Identities=15%  Similarity=0.104  Sum_probs=152.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+.++..|.++  ++.+|..|++.|.++..           .+.++.|+.+|.  +.++.++..|+.+|..+...+....
T Consensus        25 i~~L~~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           25 DDELFRLLDDH--NSLKRISSARVLQLRGG-----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHccCC-----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhccccccch
Confidence            46788899865  88999999999998762           235788999998  7889999999999999864322111


Q ss_pred             cccccCChHHHH-HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          169 GLVAEGAVSRVV-AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       169 ~i~~~g~i~~lv-~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                           ..++.|. .++++++..++..++++|.++......    .. ..+++.|+.++++++. .++..|+.+|.++.. 
T Consensus        90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKST-NVRRATAFAISVIND-  157 (280)
T ss_dssp             -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCH-HHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC-
Confidence                 1233343 245668899999999999998643211    12 3678999999988776 899999999988753 


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                               .++++.|+.++.++    +..++.+|..+...         ....++.|+.++.+.++.++..|+.+|..+
T Consensus       158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR  219 (280)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence                     24788999988554    56677888776421         134677888888878888888888888776


Q ss_pred             hcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          324 CCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       324 ~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ..           ..+++.|+.++++.+  +|..|..+|..+
T Consensus       220 ~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          220 KD-----------KRVLSVLCDELKKNT--VYDDIIEAAGEL  248 (280)
T ss_dssp             TC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred             CC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence            52           224444555444422  445555554443

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.1e-13  Score=89.28  Aligned_cols=48  Identities=31%  Similarity=0.764  Sum_probs=42.6

Q ss_pred             CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCC
Q 017402            2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPIT   49 (372)
Q Consensus         2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c   49 (372)
                      .+.+.+++.||||++.+.+|++++|||+||+.|+.+|+..  ....||.|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3457788999999999999999999999999999999864  46789987

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7e-13  Score=95.77  Aligned_cols=52  Identities=27%  Similarity=0.575  Sum_probs=46.9

Q ss_pred             CCCCCCccccCCcccCCC----ceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCC
Q 017402            3 TQFPDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLP   54 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~   54 (372)
                      ..+.+.+.||||.+.|.+    |++++|||+||+.|+.+|+...  ...||.||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            457788999999999999    9999999999999999999864  468999999877

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.34  E-value=3.6e-13  Score=93.02  Aligned_cols=57  Identities=23%  Similarity=0.424  Sum_probs=49.3

Q ss_pred             CCCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402            4 QFPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n   62 (372)
                      ...+++.||||++.+.+|       ++++|||+||+.|+.+|+.. ..+||.||..+. ..++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC-CCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccC-hhheeec
Confidence            456789999999999998       88999999999999999986 568999999988 6665543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=3.7e-13  Score=92.83  Aligned_cols=50  Identities=20%  Similarity=0.301  Sum_probs=45.0

Q ss_pred             CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ...+++.|+||++.+.+|++++|||+||+.|+.+|+.. ...||.||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence            34567899999999999999999999999999999976 478999999876

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.33  E-value=8.1e-11  Score=98.72  Aligned_cols=183  Identities=22%  Similarity=0.185  Sum_probs=152.3

Q ss_pred             hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      ..+..+.+++.|.  +.++.++..|+.+|..+..          .+.++.|+..|.+++..++..++.+|..+.      
T Consensus        12 ~~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------   73 (201)
T 3ltj_A           12 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------   73 (201)
T ss_dssp             CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred             CCcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence            3466888999999  8999999999999987642          367899999999999999999999998874      


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                          . .++++.|+.++.+.+. .++..|+++|.++..          .++++.|+.++.++    +..++.+|..+.. 
T Consensus        74 ----~-~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           74 ----D-ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             ----C-GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             ----C-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                2 3689999999998776 999999999998753          24788899988554    5678888877753 


Q ss_pred             HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       285 ~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                                .+.++.|..++.+.++.++..|+.+|..+..           ..+++.|..++++.++.+|..|..+|..
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                      5689999999998999999999999999832           2368888899999999999999999988


Q ss_pred             Hhc
Q 017402          365 LSG  367 (372)
Q Consensus       365 l~~  367 (372)
                      +..
T Consensus       196 l~~  198 (201)
T 3ltj_A          196 HKS  198 (201)
T ss_dssp             CC-
T ss_pred             HHh
Confidence            764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.32  E-value=9.1e-13  Score=91.82  Aligned_cols=51  Identities=24%  Similarity=0.464  Sum_probs=44.4

Q ss_pred             CCCCCccccCCcccC--CCceecC--CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            4 QFPDDFKCPISLEIM--SDPVILS--SGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~--~~Pv~~~--cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .+++++.||||++.+  .++++.+  |||+||+.|+.++|..+...||.||+++.
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            477899999999988  4566665  99999999999999766789999999988

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=9.9e-13  Score=90.22  Aligned_cols=52  Identities=23%  Similarity=0.441  Sum_probs=46.3

Q ss_pred             CCCCCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            2 ATQFPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         2 ~~~~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .....+.+.|+||++.+.+|       ++++|||.||..|+.+|+.. ..+||.||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   67 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN   67 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence            34567889999999999988       88999999999999999986 678999999876

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.29  E-value=2.7e-10  Score=96.26  Aligned_cols=180  Identities=19%  Similarity=0.172  Sum_probs=147.7

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+.++..|.+.  ++.+|..|+..|..+..           .+.++.|+++|.  +.+..++..++.+|..+.       
T Consensus        21 ~~~L~~~L~~~--~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~-------   78 (211)
T 3ltm_A           21 VEMYIKNLQDD--SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK--DEDAWVRRAAADALGQIG-------   78 (211)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-------
Confidence            36788888865  89999999999988653           357899999999  789999999999998874       


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                         ..+.++.|+.+|.++++.++..++.+|..+..           .+.++.|+.++.+++. .++..|+.+|.++..  
T Consensus        79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC--
T ss_pred             ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCC--
Confidence               24678999999999999999999999998742           3689999999988777 999999999999853  


Q ss_pred             chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                              ...++.|+.+++++    +..++.+|..+..           ..+++.|..++.+.++.++..|..+|..+.
T Consensus       142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                    24788899999554    5678888888743           457888999999999999999999999887


Q ss_pred             cC
Q 017402          325 CC  326 (372)
Q Consensus       325 ~~  326 (372)
                      ..
T Consensus       203 ~~  204 (211)
T 3ltm_A          203 SF  204 (211)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.28  E-value=3.6e-10  Score=94.68  Aligned_cols=177  Identities=20%  Similarity=0.172  Sum_probs=147.7

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +.+++.|.++  ++.+|..|+..|..+..           .+.++.|+++|.  +.++.++..++.+|..+..       
T Consensus        17 ~~~i~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           17 EMYIKNLQDD--SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK--DEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHTTCS--CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC-------
Confidence            6789999876  89999999999987653           246899999998  7899999999999988742       


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE  249 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  249 (372)
                         .+.++.|+..|.++++.++..|+++|..+..           ..+++.|+.++.+++. .++..|+.+|.++..   
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC---
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC---
Confidence               3678999999999999999999999998742           3589999999988776 999999999998853   


Q ss_pred             hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                             .+.++.|+.++.++    +..++.+|..+..           ..+++.|..++.+.++.++..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   35788899999554    5678888887732           457889999998899999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.26  E-value=1.3e-10  Score=118.83  Aligned_cols=267  Identities=12%  Similarity=0.126  Sum_probs=184.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHH--Hh--hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRK--LT--ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~--~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~  165 (372)
                      +.+++.+.++  ++..|..++..|..++...+..-..  +.  -...++.++.++.  +.+.+++..|+.+|.++.....
T Consensus       131 ~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          131 PKLCSLLDSE--DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHSCS--SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhccc
Confidence            5566677654  7789999999999999753322110  00  1235666667777  6789999999999998875432


Q ss_pred             ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      ....-.-.+.++.+..++.+++.+++..++++|..++........- ...++++.++..+++.++ .++..|+.++..++
T Consensus       207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~l~~l~~~l~~~~~~~~~-~vr~~a~e~l~~l~  284 (852)
T 4fdd_A          207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-HMHNIVEYMLQRTQDQDE-NVALEACEFWLTLA  284 (852)
T ss_dssp             HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHccCCcH-HHHHHHHHHHHHHh
Confidence            2111111357888888888899999999999999998654322111 113688899999888766 89999999999999


Q ss_pred             CCCchhHHHHh--cCchHHHHHHH-----------hh-----------h----HHHHHHHHHHHhCCHhHHHHHHhccch
Q 017402          246 SFPENRKRVVS--CGAVPILMRLA-----------DA-----------G----LERAVEVLSILVKCKEGREEMMRVSGC  297 (372)
Q Consensus       246 ~~~~~~~~i~~--~g~v~~L~~ll-----------~~-----------~----~e~a~~~L~~L~~~~~~~~~i~~~~g~  297 (372)
                      .....+..+..  ...++.++..+           .+           .    +..+..+|..|+....  ..+..  ..
T Consensus       285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--~l  360 (852)
T 4fdd_A          285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--HI  360 (852)
T ss_dssp             TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--HH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--HH
Confidence            76644432211  13456666655           11           1    3346666776665322  12222  36


Q ss_pred             HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       298 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ++.+...+.+.+...|+.|+.+|..++....+...... .++++.++.++++.++.||..|+++|..+..
T Consensus       361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            77788888888899999999999999987554333222 4589999999999999999999999987654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.25  E-value=1.2e-12  Score=88.31  Aligned_cols=53  Identities=25%  Similarity=0.464  Sum_probs=46.0

Q ss_pred             CCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402            7 DDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         7 ~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~   61 (372)
                      +++.||||++.+.+|       ++++|||.||..|+.+|+.. ..+||.||..+. ..++.+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~   61 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP   61 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCT-TTCEEE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCC-ccceee
Confidence            578999999999988       78999999999999999986 678999999988 555443

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.23  E-value=3.8e-12  Score=89.49  Aligned_cols=57  Identities=25%  Similarity=0.533  Sum_probs=47.0

Q ss_pred             CCCCCccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402            4 QFPDDFKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN   62 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n   62 (372)
                      ...+++.|+||++.|.+|   ++++|||.||+.|+.+|+.. ..+||.||..+. ...+.++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLT-GQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCC-CSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccC-CcccCCC
Confidence            456788999999999877   45699999999999999975 578999999988 5555443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.20  E-value=7.9e-10  Score=97.67  Aligned_cols=197  Identities=14%  Similarity=0.056  Sum_probs=149.2

Q ss_pred             HhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402          127 LTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV  206 (372)
Q Consensus       127 i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~  206 (372)
                      +.+.+.++.|+..|.  +.++.++..|+.+|.++.          ..+.++.|+.+|.++++.++..|+++|..+.....
T Consensus        19 ~~~~~~i~~L~~~L~--~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLD--DHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTT--CSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHH--cCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            445678999999999  789999999999999875          24578999999999999999999999998863221


Q ss_pred             chhhhccccchHHHHHHH-hhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402          207 NKATIGDYPYAINALVSL-LQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL  281 (372)
Q Consensus       207 ~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L  281 (372)
                      .   +   ...++.|... +.+++. .++..|+++|.++......    ....+++.|+.++.++    +..++.+|.++
T Consensus        87 ~---~---~~l~~~L~~~~~~d~~~-~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           87 C---E---DNVFNILNNMALNDKSA-CVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             T---H---HHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             c---c---hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            1   1   1345555533 444544 8999999999998742211    1124578888888554    45566777665


Q ss_pred             hCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHH
Q 017402          282 VKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNL  361 (372)
Q Consensus       282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~  361 (372)
                      ..           .+.++.|+.++.+.++.++..|+.+|..+...++         .+++.|+.++++.++.+|..|..+
T Consensus       156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~a  215 (280)
T 1oyz_A          156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIG  215 (280)
T ss_dssp             --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence            43           3589999999999999999999999998854333         357888999999999999999999


Q ss_pred             HHHHh
Q 017402          362 IQTLS  366 (372)
Q Consensus       362 L~~l~  366 (372)
                      |..+.
T Consensus       216 L~~~~  220 (280)
T 1oyz_A          216 LSYRK  220 (280)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            98765

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.18  E-value=4e-12  Score=82.92  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.+++.|+||++.+.+|++++|||+||+.|+.+    ....||.||..+.
T Consensus         3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~   48 (56)
T 1bor_A            3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWP   48 (56)
T ss_dssp             SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSS
T ss_pred             cccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEee
Confidence            357899999999999999999999999999977    3567999999877

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.17  E-value=1.1e-11  Score=84.69  Aligned_cols=48  Identities=35%  Similarity=0.660  Sum_probs=42.5

Q ss_pred             CCCccccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .++..||||++.+.+| +.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence            3567899999999997 67899999999999999976 578999998876

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.16  E-value=1.1e-11  Score=80.79  Aligned_cols=48  Identities=29%  Similarity=0.585  Sum_probs=41.9

Q ss_pred             CCCccccCCcccCCC----ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .++..|+||++.+.+    ++.++|||.||..|+.+|+... .+||.||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            356789999999876    7789999999999999999874 78999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.16  E-value=1.1e-10  Score=119.43  Aligned_cols=265  Identities=13%  Similarity=0.098  Sum_probs=179.8

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +++.+.+  .++++|..|++.|..+....+.   .+..  .+.++.++.++.  +++.+++..++.+|..++........
T Consensus       179 l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          179 FLQFFKH--SSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HTTTTTC--SSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHhcC--CCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            4444443  3789999999999988864331   1111  246778888887  78899999999999998765221111


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhh----------cC----------
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQ----------NG----------  228 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~----------~~----------  228 (372)
                      -.-.+.++.++..+++.+.+++..|+.++..++.....+..+.. ....++.|+..+.          .+          
T Consensus       252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~  331 (852)
T 4fdd_A          252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT  331 (852)
T ss_dssp             GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence            01135788888888888999999999999999865433322211 1257788887772          11          


Q ss_pred             -CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHH
Q 017402          229 -KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVK  303 (372)
Q Consensus       229 -~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~  303 (372)
                       ..-.++..|..+|..++....  ..++. ..++.+..++.+.    ++.++.+|++++........-. ..+.++.|+.
T Consensus       332 ~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~  407 (852)
T 4fdd_A          332 ISDWNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQ  407 (852)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHH
Confidence             011468888888888875322  11221 3456666666443    7789999999998654322211 2468899999


Q ss_pred             HHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          304 MLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       304 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .+.+.++.++..|+.+|..++...+.......-.++++.|+..+.+.++.+|.+|.++|..+.+
T Consensus       408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            9998999999999999999886422211111123578889999988999999999999987753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.16  E-value=1e-11  Score=80.88  Aligned_cols=49  Identities=33%  Similarity=0.765  Sum_probs=42.9

Q ss_pred             CCCCccccCCcccCCC---ceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSD---PVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~---Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +.++..|+||++.+.+   +++++ |||.||..|+.+|+.. ..+||.||..+.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            5678899999999988   78887 9999999999999975 678999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=6.8e-10  Score=110.38  Aligned_cols=189  Identities=10%  Similarity=0.086  Sum_probs=146.5

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHH-HHhhcCCchHHHHHHHHHHHhhcCC--Cch
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALV-SLLQNGKLIREKKEAATALYALTSF--PEN  250 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~a~~aL~~L~~~--~~~  250 (372)
                      +.|.++++.|++++++.|..|+++|.+|+.+.+.+..+.. .|+|..++ .+|.+.+. +++..|+++|+||+..  .+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~-~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNI-DSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCH-HHHHHHHHHHHHHHhhcCchH
Confidence            4566788889999999999999999999987777777766 57777655 56666666 9999999999999975  468


Q ss_pred             hHHHHhcCchHHHHHHHhhh-------------------------HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHH
Q 017402          251 RKRVVSCGAVPILMRLADAG-------------------------LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKM  304 (372)
Q Consensus       251 ~~~i~~~g~v~~L~~ll~~~-------------------------~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~l  304 (372)
                      +..+++.|++++|+.++...                         .+.++.+|++||... +....+.. .++++.|+..
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~  190 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFR  190 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHH
Confidence            88999999999999998321                         235778899998744 44456666 7899999998


Q ss_pred             Hhc---CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhH---HHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          305 LKT---GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD---ICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       305 l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~---~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +..   .+..+...|+.+|..++..+++..+.+.+.|...   .++.+. ..++..+..++++|.++.
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence            854   2457889999999999999999989998887433   333333 344455778889988764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3.2e-11  Score=83.77  Aligned_cols=50  Identities=24%  Similarity=0.582  Sum_probs=43.5

Q ss_pred             CCCCCccccCCcccCCCceec---CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            4 QFPDDFKCPISLEIMSDPVIL---SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         4 ~~~~~~~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ...++..|+||++.+.+|..+   +|||.||..|+.+|+.. ..+||.||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~   63 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVL   63 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccc
Confidence            456788999999999887644   99999999999999986 458999999887

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.13  E-value=3e-11  Score=82.65  Aligned_cols=49  Identities=29%  Similarity=0.624  Sum_probs=42.0

Q ss_pred             CCCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..++..|+||++.+.   .++.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~   62 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIE   62 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence            456789999999884   4577899999999999999986 557999999877

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.12  E-value=2.1e-11  Score=88.18  Aligned_cols=49  Identities=24%  Similarity=0.587  Sum_probs=43.0

Q ss_pred             CCCCccccCCcccCCC---ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..++..|+||++.|.+   +++++|||.||..||.+|+.. ..+||.||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence            4467889999999887   788999999999999999975 568999998876

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=7.9e-12  Score=85.87  Aligned_cols=50  Identities=36%  Similarity=0.780  Sum_probs=44.9

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..+.+.+.|+||++.+.+ ++++|||.||..|+.+|+. ...+||.||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTT
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCccc
Confidence            456778999999999999 9999999999999999987 4778999998887

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.2e-11  Score=83.98  Aligned_cols=49  Identities=22%  Similarity=0.548  Sum_probs=43.1

Q ss_pred             CCCCccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ..++..|+||++.+.++   +.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~   71 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSG   71 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCC
Confidence            34678899999999888   67899999999999999986 568999999876

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.08  E-value=6.5e-11  Score=89.71  Aligned_cols=48  Identities=19%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             CCccccCCcccCCCce------------------ecCCchHhhHHHHHHHHhc----CCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPV------------------ILSSGHTFDRASIQRWLDS----GHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv------------------~~~cgh~~c~~ci~~~~~~----~~~~CP~c~~~~~   54 (372)
                      .+..|+||++.|.+|+                  .++|||.||..||.+|+..    ...+||.||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4569999999998775                  6789999999999999963    3568999999887

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.06  E-value=2.8e-11  Score=94.53  Aligned_cols=55  Identities=24%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             CCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402            5 FPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~   61 (372)
                      .++++.||||++.|.+|       ++++|||+||..||.+|+.. ..+||.|+..+. ...+.+
T Consensus         4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~   65 (133)
T 4ap4_A            4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP   65 (133)
T ss_dssp             -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCT-TTCEEE
T ss_pred             CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCc-cccccc
Confidence            45789999999999999       89999999999999999985 568999999988 554433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.06  E-value=2.2e-09  Score=101.42  Aligned_cols=267  Identities=13%  Similarity=0.114  Sum_probs=176.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCC--ChhHHHHHHHHHhcCCCC-cc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSD--GFTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~~a~~~L~~l~~~-~~  165 (372)
                      |.+++.+.+++.++..|..|+..|..++... ++.-.... ...++.++..|.  +.  +..++..|+.++.++... ++
T Consensus       131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~--~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR--KEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5566677653216788999999999999743 21111111 236777888887  44  789999999999986432 11


Q ss_pred             cc-ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch--hhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          166 NK-VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK--ATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       166 ~~-~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      +. ......-.++.+...+.+++.+++..++.+|..++......  ..+.  .++++.++..+++.++ .++..|+..+.
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~-~v~~~a~~~l~  284 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDID-EVALQGIEFWS  284 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHHCSSH-HHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence            10 00011113556666666788999999999999998654321  2222  1688888888887776 89999999988


Q ss_pred             hhcCCCc------------------hhHHHHh---cCchHHHHHHHhh-------h----HHHHHHHHHHHhCCHhHHHH
Q 017402          243 ALTSFPE------------------NRKRVVS---CGAVPILMRLADA-------G----LERAVEVLSILVKCKEGREE  290 (372)
Q Consensus       243 ~L~~~~~------------------~~~~i~~---~g~v~~L~~ll~~-------~----~e~a~~~L~~L~~~~~~~~~  290 (372)
                      .++....                  ....+++   ...+|.+++.+..       .    +..+..+|..++..-.  +.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~  362 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD  362 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            8875320                  0111111   2345666666621       1    5567777777776322  12


Q ss_pred             HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +..  ..++.+...+.+.+...++.|+.+|..++.+.. +.-...+ ..+++.++..+.+.++.||..|+++|..+..
T Consensus       363 ~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          363 IVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            222  467777778888888999999999999997532 2111111 4689999999999999999999999987764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.01  E-value=4e-09  Score=102.84  Aligned_cols=256  Identities=12%  Similarity=0.018  Sum_probs=180.6

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL  170 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  170 (372)
                      .+...+.+.  ++.+|..+++.|..++..-.  . .......++.+..+++  +.+++++..++.+|..+...-.. . .
T Consensus       328 ~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~--~-~~~~~~l~p~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~-~-~  398 (588)
T 1b3u_A          328 CIKELVSDA--NQHVKSALASVIMGLSPILG--K-DNTIEHLLPLFLAQLK--DECPEVRLNIISNLDCVNEVIGI-R-Q  398 (588)
T ss_dssp             HHHHHHTCS--CHHHHHHHHTTGGGGHHHHC--H-HHHHHHTHHHHHHHHT--CSCHHHHHHHHTTCHHHHHHSCH-H-H
T ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHHHHhh--H-hHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHHHhcCH-H-H
Confidence            344455443  78899999999988875311  1 1112347888899998  78899999999888776532111 0 1


Q ss_pred             cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch
Q 017402          171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN  250 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  250 (372)
                      .....++.+..++++.+..+|..++.+|..++..-...  ... ...++.++.++.+.+. .++..|+.+|..++..-..
T Consensus       399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~  474 (588)
T 1b3u_A          399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFD-EKLNSLCMAWLVDHVY-AIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCC-HHHHHHHHHGGGCSSH-HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHH-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhCc
Confidence            12457888888888888999999999999987532211  222 4688999999988776 8999999999998753222


Q ss_pred             hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          251 RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       251 ~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      .  ......+|.|+.++.+.    +..++.++..++..-. ...+.  ...++.|...+.+.++.++..++.+|..++..
T Consensus       475 ~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          475 E--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             H--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHHHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             h--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            1  12234667777666443    5667888888876322 22222  34788999999888899999999999999864


Q ss_pred             CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          327 SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       327 ~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      -..   ......+++.|..++.+.+.++|..|..+|..+.+
T Consensus       550 ~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          550 LDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             SCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             hch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            222   12234577888888888999999999999988764

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.00  E-value=3.8e-11  Score=83.12  Aligned_cols=44  Identities=16%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .+++.|+||++.+.+|++++|||. ||..|+.+|     ..||.||..+.
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~   66 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT   66 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence            356889999999999999999999 999999988     67999999876

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.99  E-value=1.2e-08  Score=99.35  Aligned_cols=247  Identities=16%  Similarity=0.113  Sum_probs=166.5

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      .++.+|..|...|.+++...+..  . ...-.++.+..+..  +.+...+..++.+|..++..-...   .....++.+.
T Consensus        99 ~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~--~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~  170 (588)
T 1b3u_A           99 EETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFR  170 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHH
Confidence            37889999999999999754421  1 22234666666666  677889999999998876552211   1345678888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      .++.++++.+|..++.+|..++..-.... . . ...+|.|..++.+++. .++..|+.+|..++..-..  .......+
T Consensus       171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-~-~-~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~~  244 (588)
T 1b3u_A          171 NLCSDDTPMVRRAAASKLGEFAKVLELDN-V-K-SEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQ--EDLEALVM  244 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSCHHH-H-H-HTHHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSCH--HHHHHHTH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhcHHh-H-H-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence            88888999999999999999975432221 1 2 3689999999988776 8999999999988753221  11223466


Q ss_pred             HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHH
Q 017402          261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSR  335 (372)
Q Consensus       261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~  335 (372)
                      +.+..++++.    +..++.+|..++..... ..+ . ...++.+..++.+.++.++..|+.+|..++...+ +.+....
T Consensus       245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  321 (588)
T 1b3u_A          245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI  321 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence            7777777543    66788888888763211 112 2 3578999999998899999999999999886432 2111111


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                      -..+++.+..++++.++.+|..+.++|..
T Consensus       322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~  350 (588)
T 1b3u_A          322 MSQILPCIKELVSDANQHVKSALASVIMG  350 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            23355555556666666666665555443

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=98.98  E-value=2.3e-10  Score=113.39  Aligned_cols=72  Identities=36%  Similarity=0.605  Sum_probs=66.7

Q ss_pred             CCCCCCccccCCcccCCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      ..+|++|.|||..++|+|||+++.| +||.|.+|++|+.. ..+||.+|++++ ...+.||+.++..|+.|+..+
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~~~~  958 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK-LEDVTPNEELRQKILCFKKQK  958 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHH
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC-cccccccHHHHHHHHHHHHHH
Confidence            4689999999999999999999997 69999999999986 668999999999 889999999999999999863

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.98  E-value=2.1e-09  Score=106.88  Aligned_cols=187  Identities=18%  Similarity=0.085  Sum_probs=140.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccc--cchh
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVE--VNKA  209 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~--~~~~  209 (372)
                      |.++++.|+  +.+++.|..|+.+|.+|+.++..+..+...|++..++. +|.+.+.+++..|+++|.||+...  +.+.
T Consensus        36 i~Pll~~L~--S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILPVLKDLK--SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THHHHHHHS--SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            455667788  78999999999999999998888888889999887654 678889999999999999999764  4556


Q ss_pred             hhccccchHHHHHHHhhcCCc--------------------hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHh
Q 017402          210 TIGDYPYAINALVSLLQNGKL--------------------IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLAD  268 (372)
Q Consensus       210 ~i~~~~g~i~~Lv~ll~~~~~--------------------~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~  268 (372)
                      .+.. .|++++|..+++....                    ..+..+++.+|++||.. ++....+.+.|+++.|+..|.
T Consensus       114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            6666 6999999999863110                    02445678899999974 456778888899999999883


Q ss_pred             hh-------HHHHHHHHHHHhCCHh-HHHHHHhccch---HHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          269 AG-------LERAVEVLSILVKCKE-GREEMMRVSGC---VGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       269 ~~-------~e~a~~~L~~L~~~~~-~~~~i~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      +.       ...++..|.+|+.+.. ..+.+.. .|.   +..+..+ ...+...+..++++|+++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            22       5668889999998644 4455555 343   3333333 3445556788999999974

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.93  E-value=3.5e-10  Score=102.00  Aligned_cols=48  Identities=23%  Similarity=0.396  Sum_probs=43.9

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ....|+||.+.+.+|+.++|||.||..|+.+|+......||.||.++.
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~  378 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK  378 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence            347899999999999999999999999999999855778999999887

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.93  E-value=1.3e-08  Score=99.54  Aligned_cols=253  Identities=14%  Similarity=0.073  Sum_probs=173.3

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .++++.++.+.  +.+.|.-+...+..++..+++..     .-.+..+.+-|.  +.++.++..|+++|.++.. ++.  
T Consensus        51 ~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~--~~n~~ir~~AL~~L~~i~~-~~~--  118 (591)
T 2vgl_B           51 FPDVVNCMQTD--NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCE--DPNPLIRALAVRTMGCIRV-DKI--  118 (591)
T ss_dssp             HHHHHHTTSSS--CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSS--SSSHHHHHHHHHHHHTCCS-GGG--
T ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCCh-HHH--
Confidence            35677766544  78888888888888887555432     224566666777  7889999999999999962 221  


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                         ....++.+.++|.+.++.+|..|+.++..+....  .+.+.. .+.++.|..+|.+.+. .++..|+.+|..++...
T Consensus       119 ---~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~-~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          119 ---TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVED-QGFLDSLRDLIADSNP-MVVANAVAALSEISESH  191 (591)
T ss_dssp             ---HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHH-HHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSC
T ss_pred             ---HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhccc-ccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhC
Confidence               2345678999999999999999999999997643  223333 4789999999987766 99999999999999865


Q ss_pred             chh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          249 ENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       249 ~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      ... ..-...+.+..|+..+.+.    +-..+.++..++..+...   .  ...++.+..++++.++.++..|+.++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~---~--~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE---A--QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---H--HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---H--HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            322 1111223456667666443    445666666666432211   1  23566777777788889999999999998


Q ss_pred             hcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          324 CCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       324 ~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ...   +++..+.+. ..+.+.|+.++. .++++|..|...|..+..
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~  311 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ  311 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence            642   344433332 234566666654 678888888888876543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.91  E-value=7.1e-08  Score=94.38  Aligned_cols=257  Identities=10%  Similarity=0.082  Sum_probs=172.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc-c
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK-V  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~  168 (372)
                      +.+...|.+.  ++.+|..|+.++.++...+++   .+.+.+.++.+..+|.  +.++.++..|+.+|..++.+.... .
T Consensus       124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          124 EPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHcCCC--ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccc
Confidence            4466677654  899999999999999986654   2334578899999998  889999999999999998764322 1


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC--
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS--  246 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~--  246 (372)
                      .-...+.+..|+..+...++-.+.....++..+...++.  .  . ...++.+..++++.++ .++..|++++..+..  
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~-~~~l~~l~~~l~~~~~-~V~~ea~~~i~~l~~~~  270 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--A-QSICERVTPRLSHANS-AVVLSAVKVLMKFLELL  270 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--H-HHHHHHHTTCSCSSTT-HHHHHHHHHHHHSCCSC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--H-HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhhcc
Confidence            112245677888888888888888888888887643221  1  1 3678888888888777 999999999999874  


Q ss_pred             --CCchhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCC----------------H---hHHHHHHh------ccc
Q 017402          247 --FPENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKC----------------K---EGREEMMR------VSG  296 (372)
Q Consensus       247 --~~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~----------------~---~~~~~i~~------~~g  296 (372)
                        +++....+. ..+.+.|+.+++++   +-.++..|..+...                .   .-|....+      +..
T Consensus       271 ~~~~~~~~~~~-~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~  349 (591)
T 2vgl_B          271 PKDSDYYNMLL-KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA  349 (591)
T ss_dssp             CBTTBSHHHHH-HHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence              233333332 23556677666433   33455555555420                0   01111111      122


Q ss_pred             ----hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          297 ----CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ----~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                          .++.|..++.+.+...+..++.++..++...+....     .+++.|+.++.+.++.++..+...++.+
T Consensus       350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence                345555666667888999999999999877654332     3567777777776666666665555443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=4.2e-10  Score=79.32  Aligned_cols=47  Identities=19%  Similarity=0.476  Sum_probs=39.9

Q ss_pred             CCccccCCcccCCC--------------ceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSD--------------PVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~--------------Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++..|+||++.|.+              ++++ +|||.|+..||.+|+.. ..+||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence            56789999999977              4455 59999999999999986 468999998876

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=3.9e-10  Score=78.27  Aligned_cols=44  Identities=16%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++++.|+||++.+.+|++++|||. ||..|+.+     ...||.||.++.
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~   67 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVIT   67 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceec
Confidence            346789999999999999999999 99999964     367999999887

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.83  E-value=1.4e-09  Score=72.67  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=42.5

Q ss_pred             CCCccccCCcccCCCceec--CCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVIL--SSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~--~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +++..|+||++...+++.+  +|||. ||..|+.+|+.. ...||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            4567899999999999987  99999 899999999975 567999999876

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.81  E-value=5.5e-10  Score=87.09  Aligned_cols=54  Identities=24%  Similarity=0.479  Sum_probs=46.2

Q ss_pred             CCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402            6 PDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~   61 (372)
                      ++.+.|+||++.+.+|       +.++|||.||..|+.+|+.. ..+||.||..+. ..++.+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~  130 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP  130 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCC-hhccee
Confidence            4678899999999887       88999999999999999986 568999999888 555443

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.79  E-value=2.7e-09  Score=78.82  Aligned_cols=47  Identities=23%  Similarity=0.426  Sum_probs=40.3

Q ss_pred             CCccccCCcccCCCc------------------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDP------------------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~P------------------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ++..|+||++.|.+|                  +.++|||.|+..||.+|+.. +.+||.||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            456899999999876                  34789999999999999986 678999998765

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.77  E-value=2.5e-09  Score=71.25  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             CCccccCCcccCCCceec--CCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVIL--SSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~--~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      ....|+||++..++++++  +|||. ||..|..+|+.. ...||.||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            456899999999999987  99998 999999999975 478999999876

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.76  E-value=7.7e-07  Score=87.44  Aligned_cols=252  Identities=15%  Similarity=0.101  Sum_probs=169.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      ..+.+..+.+.  +.+.|.-+.-.+..++..+++...     -.+..+.+-|.  +.++.++..|+++|.++... +   
T Consensus        72 ~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~~-~---  138 (618)
T 1w63_A           72 QLECLKLIASQ--KFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLN--HSTQFVQGLALCTLGCMGSS-E---  138 (618)
T ss_dssp             HHHHHHHHHSS--SHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHS--CSSSHHHHHHHHHHHHHCCH-H---
T ss_pred             HHHHHHHHcCC--chHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcC--CCCHhHHHHHHHHHHhcCCH-H---
Confidence            35677777654  677777777788888876653222     13566777777  78899999999999999732 1   


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                       + ....++.+.++|++.++.+|..|+.++.++.....  +. .  .+.++.+..++.+.+. .++..|+.+|..++..+
T Consensus       139 -~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~-v--~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          139 -M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--EL-M--EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             -H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GG-G--GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSH
T ss_pred             -H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HH-H--HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhC
Confidence             2 24568889999999999999999999999986432  22 2  2678888888887766 89999999999998754


Q ss_pred             ch-hHHHHhcCchHHHHHHHhh-----------------h--HHHHHHHHHHHhCCHhH-HH-------H----------
Q 017402          249 EN-RKRVVSCGAVPILMRLADA-----------------G--LERAVEVLSILVKCKEG-RE-------E----------  290 (372)
Q Consensus       249 ~~-~~~i~~~g~v~~L~~ll~~-----------------~--~e~a~~~L~~L~~~~~~-~~-------~----------  290 (372)
                      .. ...+.  ..++.++.+|..                 +  +-.++.+|..++..+.. ..       .          
T Consensus       211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred             hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence            32 12221  466777766632                 1  33455555555543211 00       0          


Q ss_pred             ------------HHh-------ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc
Q 017402          291 ------------MMR-------VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN  351 (372)
Q Consensus       291 ------------i~~-------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~  351 (372)
                                  +..       ...++..|..++.+.++.++..|+.+|..++...++..    + .....++..+.+.+
T Consensus       289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d  363 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLD  363 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSC
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCC
Confidence                        000       01256777777877788888888888888876544321    1 24556777777778


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 017402          352 EKVRRNANNLIQTLSGN  368 (372)
Q Consensus       352 ~~v~~~a~~~L~~l~~~  368 (372)
                      ..+|+.|..+|..+...
T Consensus       364 ~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          364 VSIKRRAMELSFALVNG  380 (618)
T ss_dssp             HHHHHHHHHHHHHHCCS
T ss_pred             hhHHHHHHHHHHHHccc
Confidence            88888888888766543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.70  E-value=3.7e-09  Score=76.85  Aligned_cols=47  Identities=13%  Similarity=0.263  Sum_probs=39.6

Q ss_pred             CCCccccCCcccCCCceec---CCchHhhHHHHHHHHhc----C---CCCCCC--CCCC
Q 017402            6 PDDFKCPISLEIMSDPVIL---SSGHTFDRASIQRWLDS----G---HRTCPI--TKLP   52 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~----~---~~~CP~--c~~~   52 (372)
                      .+.+.||||.+.+.+|+++   +|||.||+.|+.+|+..    +   ...||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4578999999999999765   69999999999999963    2   247999  9887

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.68  E-value=3e-07  Score=93.92  Aligned_cols=267  Identities=13%  Similarity=0.125  Sum_probs=171.3

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHH-HHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSAS-RRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~  169 (372)
                      +...+.+...+.++|..|++.+..++..-..+ .........++.+...+.  +.+.+++..++.+|..+... +..-..
T Consensus       177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~  254 (876)
T 1qgr_A          177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMET  254 (876)
T ss_dssp             HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34445443225789999999999987532222 111111124666667666  67889999999999987754 221112


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc----------------h---hhhc-cccchHHHHHHHhhcC-
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN----------------K---ATIG-DYPYAINALVSLLQNG-  228 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~----------------~---~~i~-~~~g~i~~Lv~ll~~~-  228 (372)
                      ......++.++..+.+.+..++..++.++..++.....                +   ..+. .....++.++..+... 
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~  334 (876)
T 1qgr_A          255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD  334 (876)
T ss_dssp             HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence            22336788888888888899999999998888754200                0   0000 0125677788887532 


Q ss_pred             -----CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh--HHHHHHhccch
Q 017402          229 -----KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE--GREEMMRVSGC  297 (372)
Q Consensus       229 -----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~--~~~~i~~~~g~  297 (372)
                           ++..++..|..+|..++..-.  ..++. ..++.+...+.+.    ++.++.++..++....  ......  ...
T Consensus       335 ~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~  409 (876)
T 1qgr_A          335 ENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQA  409 (876)
T ss_dssp             SSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHH
Confidence                 123688888899888875321  11111 2344444455333    6789999999987532  222333  347


Q ss_pred             HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH--HHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC--GDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       298 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ++.++..+.+.++.++..|+.+|..++...+...  .... ..+++.++..+.+. +++|..|.++|..+..
T Consensus       410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence            8999999988899999999999999987644310  1111 24677888888774 8999999999987653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.68  E-value=1.8e-09  Score=75.49  Aligned_cols=44  Identities=16%  Similarity=0.357  Sum_probs=39.3

Q ss_pred             CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +++..|+||++.+.+|+.++|||. ||..|+.+|+     .||.||..+.
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~   60 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVE   60 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCC
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhh
Confidence            356789999999999999999999 9999998763     7999999887

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.67  E-value=3.9e-07  Score=92.94  Aligned_cols=258  Identities=12%  Similarity=0.155  Sum_probs=167.0

Q ss_pred             CChHHHHHHHHHHHHHhhcCh-HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc--ccccccCChH
Q 017402          101 SPLESKLESLTQLTKLSKRDS-ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK--VGLVAEGAVS  177 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~i~~~g~i~  177 (372)
                      .+...|..|+..+..++.... +.-..... ..++.|+..+.  +.++.++..++.+|..++..-...  ..-.-...++
T Consensus       381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~  457 (861)
T 2bpt_A          381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ  457 (861)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence            368899999999999997532 22122222 46788888888  788999999999999887541110  0001245678


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccccc--hhhhc-cccchHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCC-chhH
Q 017402          178 RVVAALRFGSPDCRAIAATIITSLAVVEVN--KATIG-DYPYAINALVSLLQNGKL-IREKKEAATALYALTSFP-ENRK  252 (372)
Q Consensus       178 ~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~-~~~g~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~-~~~~  252 (372)
                      .++..+++. +.++..++++|.+++..-..  ...+. ....+++.|+.++.+.+. ..++..++.+|..++... +...
T Consensus       458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~  536 (861)
T 2bpt_A          458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA  536 (861)
T ss_dssp             HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred             HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence            888888665 88999999999998754220  11121 113678889999985432 378999999999987633 2222


Q ss_pred             HHHhcCchHHHHHHHhh---------------h----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCCh-h
Q 017402          253 RVVSCGAVPILMRLADA---------------G----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSS-R  311 (372)
Q Consensus       253 ~i~~~g~v~~L~~ll~~---------------~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~-~  311 (372)
                      ..+. ..++.++..+..               .    +..++.+|.+++..-..  .+.. ....++.+...+...+. .
T Consensus       537 ~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~  613 (861)
T 2bpt_A          537 ETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSAF  613 (861)
T ss_dssp             HHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred             HHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCCc
Confidence            2222 356667666632               1    23567777777652211  1111 12467778888877666 8


Q ss_pred             HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          312 AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       312 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +++.++.++..++....+....... .+++.++..+.+.+.++|..|..++..+.
T Consensus       614 v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~  667 (861)
T 2bpt_A          614 IEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADIS  667 (861)
T ss_dssp             THHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            8999998888887542221111222 27888888888778889999988887554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.67  E-value=1e-06  Score=90.04  Aligned_cols=268  Identities=13%  Similarity=0.121  Sum_probs=174.3

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~  165 (372)
                      |.+++.+.+++.++.+|..++..|..++..- ++   .+..  ...++.+...+.+...+.+++..++.+|.++... +.
T Consensus       131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5566666653216788999999999998742 21   1221  2456667777762212678999999999887643 11


Q ss_pred             c-cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc--hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          166 N-KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN--KATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       166 ~-~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      + .........++.+...+.+.+.+++..++..|..+......  ...+.  ..+++.++..+.+.++ .++..|+..+.
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~-~v~~~al~~l~  284 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDID-EVALQGIEFWS  284 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSH-HHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence            1 11111123566677777777899999999999998864422  12222  2678888888877666 89999999888


Q ss_pred             hhcCCCc-------------------hhHHH--HhcCchHHHHHHHh-------hh----HHHHHHHHHHHhCCHhHHHH
Q 017402          243 ALTSFPE-------------------NRKRV--VSCGAVPILMRLAD-------AG----LERAVEVLSILVKCKEGREE  290 (372)
Q Consensus       243 ~L~~~~~-------------------~~~~i--~~~g~v~~L~~ll~-------~~----~e~a~~~L~~L~~~~~~~~~  290 (372)
                      +++....                   ....+  .-...++.++..+.       +.    +..+..+|..++..-.  ..
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~  362 (876)
T 1qgr_A          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hh
Confidence            8875310                   00000  00234666777762       11    5567777777765322  11


Q ss_pred             HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      +.  ...++.+...+.+.+..+++.|+.+|..++.... +...... .++++.++..+.+.++.+|..|.++|..+...
T Consensus       363 ~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          363 IV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            22  2356667777777888999999999999987643 3322322 34899999999999999999999999877653

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=3e-08  Score=69.10  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             CCCCccccCCcccC--CCceecCCc-----hHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIM--SDPVILSSG-----HTFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         5 ~~~~~~C~ic~~~~--~~Pv~~~cg-----h~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      ..++..|+||++-+  .+|++++|+     |.|+..||.+|+... ..+||.|+..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            34567899999876  478888996     999999999999764 468999999887

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=4.4e-08  Score=66.12  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .++..|+||++...+++.++|||. ||..|+..     ...||.||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~   57 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQ   57 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchh
Confidence            457889999999999999999999 99999984     467999999887

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.53  E-value=1.1e-08  Score=76.52  Aligned_cols=46  Identities=24%  Similarity=0.463  Sum_probs=0.5

Q ss_pred             CccccCCcccCCCce-----------------e-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPV-----------------I-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv-----------------~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +-.|+||++.|.+|.                 . .+|||.|+..||.+|+.. +.+||.||.++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            458999999998752                 2 489999999999999986 678999998765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.51  E-value=2.1e-06  Score=84.41  Aligned_cols=244  Identities=12%  Similarity=0.042  Sum_probs=160.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc-cc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN-KV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~-~~  168 (372)
                      +.+...|.+.  ++.+|..|+..+.++...+++..+     +.++.+..+|.  +.++.++..|+.+|..++..+.. ..
T Consensus       145 ~~l~~~L~~~--~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          145 GEVEKLLKTS--NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHSC--CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHH
Confidence            4566667664  889999999999999987764322     57778888888  78899999999999998765322 11


Q ss_pred             cccccCChHHHHHHHhc---------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-----
Q 017402          169 GLVAEGAVSRVVAALRF---------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-----  228 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~---------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-----  228 (372)
                      .+  ...++.++.+|.+               .++-.+.....+|..++..+....     ...++.|..++...     
T Consensus       216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence            12  3578888888764               367778888888988876542111     12344444444321     


Q ss_pred             CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHH
Q 017402          229 KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKM  304 (372)
Q Consensus       229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~l  304 (372)
                      ....+.-.|+.++..+...+..    .+ .+++.|..++.+.    +..++..|..++..   ...++.  .....+...
T Consensus       289 ~~~aV~~ea~~~i~~l~~~~~l----~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~--~~~~~i~~~  358 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSESGL----RV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ--RHRSTIVDC  358 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHH----HH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG--GGHHHHHHG
T ss_pred             hHHHHHHHHHHHHHhcCCCHHH----HH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH--HHHHHHHHH
Confidence            1126777888888887553221    11 3567788877543    55677777777653   222333  256677777


Q ss_pred             HhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          305 LKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       305 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +.+.+..++..|+.+|..++... .. ..     +++.|+..+.+.+.++|..+...+..+.
T Consensus       359 l~d~d~~Ir~~alelL~~l~~~~-nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la  413 (618)
T 1w63_A          359 LKDLDVSIKRRAMELSFALVNGN-NI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAA  413 (618)
T ss_dssp             GGSSCHHHHHHHHHHHHHHCCSS-ST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ccCCChhHHHHHHHHHHHHcccc-cH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            77778888888888888887642 11 11     3466666777777777777777776554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.48  E-value=1.1e-06  Score=82.77  Aligned_cols=252  Identities=12%  Similarity=0.042  Sum_probs=166.8

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc-cc--------cccc
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NK--------VGLV  171 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~-~~--------~~i~  171 (372)
                      .+.++|.+|-..|..+...+        ..+.+..|..++.+.+.+..++..|+..|.++..... ..        ..+-
T Consensus        13 ~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~   84 (462)
T 1ibr_B           13 PDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID   84 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC
Confidence            37788999999998866521        1346778888888433468899999999999753311 00        0111


Q ss_pred             ---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC--CchHHHHHHHHHHHhhcC
Q 017402          172 ---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG--KLIREKKEAATALYALTS  246 (372)
Q Consensus       172 ---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a~~aL~~L~~  246 (372)
                         ...+-..++..|.+.+..+ ..++.+|..++..+....   .-.+.++.|+..+.++  +. .++..|+.+|..++.
T Consensus        85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~-~~r~~al~~l~~l~~  159 (462)
T 1ibr_B           85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTE-HMKESTLEAIGYICQ  159 (462)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHH
Confidence               1234455777887877777 888899999986642211   2257999999999987  55 899999999999986


Q ss_pred             CC--chhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHH--HHHhccchHHHHHHHHhcCChhHHHhH
Q 017402          247 FP--ENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGRE--EMMRVSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       247 ~~--~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~--~i~~~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      .-  +...... ..+++.++..+.+.      +..++.++.++...-....  .... .-.++.+...+.+.++.++..+
T Consensus       160 ~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~  237 (462)
T 1ibr_B          160 DIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAA  237 (462)
T ss_dssp             HSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHH
Confidence            32  2111111 13566777777332      4668888888765321110  0011 1135566666667788999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +.+|..++...++.-...+..++++.++..+++.++.++..|...+..+.+
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             HHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            999999987655432222222678888888888899999999998876653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.46  E-value=3.6e-06  Score=69.71  Aligned_cols=144  Identities=16%  Similarity=0.136  Sum_probs=108.5

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV  168 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~  168 (372)
                      .++.+|.+.  |+.++.+++.+|.++-+.- ...+....+ ..++.++.+++  +.+..+...|+++|..|-.+ +-...
T Consensus        37 ~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           37 LILELAGED--DETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALS--QENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            366677554  8999999999999999863 223444433 46999999998  89999999999999987666 22222


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      .+  .-.+..+..++++++.-.+.+++..+..+..      ..-. .+++..+..++.+.+. +++..|+.+|.|++...
T Consensus       112 ~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~-~~V~~~l~sLl~Skd~-~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDS-KLVRTYINELVVSPDL-YTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCC-HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHGGGC
T ss_pred             HH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccch-HHHHHHHHHHHhCCCh-hHHHHHHHHHHHhhccc
Confidence            22  1246778888888999999999999999821      1112 4788888999977666 99999999999998744


Q ss_pred             c
Q 017402          249 E  249 (372)
Q Consensus       249 ~  249 (372)
                      +
T Consensus       182 ~  182 (265)
T 3b2a_A          182 A  182 (265)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.43  E-value=3.7e-07  Score=97.00  Aligned_cols=262  Identities=13%  Similarity=0.098  Sum_probs=171.1

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL  170 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  170 (372)
                      .++..+.+.  |.+.|..|...|.+........-..-.....++.|++.|.  +.+..+|..|+.+|..++..-.. .  
T Consensus        10 ~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~-~--   82 (1230)
T 1u6g_C           10 NLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKE-Y--   82 (1230)
T ss_dssp             HHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCH-H--
T ss_pred             HHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCH-H--
Confidence            455555544  8899999999998876532110000011245777888888  78999999999999998754211 1  


Q ss_pred             cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh----hh-ccccchHHHHHHHhhc-CCchHHHHHHHHHHHhh
Q 017402          171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA----TI-GDYPYAINALVSLLQN-GKLIREKKEAATALYAL  244 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~----~i-~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L  244 (372)
                      .-...++.++..|.+++..+|..++.+|..++..-....    .. ......+|.|+..+.+ ++. .++..|+.+|.++
T Consensus        83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~~  161 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHH
Confidence            013456777888888888999999999998875432210    00 0113689999999985 444 8999999999998


Q ss_pred             cCC-Cc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC-hhHHHhHH
Q 017402          245 TSF-PE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS-SRAVQCSL  317 (372)
Q Consensus       245 ~~~-~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~-~~~~~~a~  317 (372)
                      +.. ++ ....+  ...++.|+..+.+.    ++.++.+|..++.....  .+.  ...++.++..+...+ ...+..++
T Consensus       162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHH
Confidence            742 11 11111  22445555555433    77889999999875332  222  347888888886643 45677888


Q ss_pred             HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .++..++...++.-... -..+++.++..+++.++.+|+.|..++..+..
T Consensus       236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~  284 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR  284 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            88888876533311111 14589999999998899999999998876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.41  E-value=6.6e-06  Score=83.81  Aligned_cols=271  Identities=12%  Similarity=0.054  Sum_probs=163.3

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-------------CCChhHHHHHHHHH
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-------------SDGFTLQEKALSLL  157 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~~~~~~~a~~~L  157 (372)
                      .++..+.+...++.+|..++..|..++...+........ ..++.+++.|...             +....++..++.+|
T Consensus       502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  580 (861)
T 2bpt_A          502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL  580 (861)
T ss_dssp             HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHH
Confidence            455566544334788999999999998765432222222 3567777777631             11345677888888


Q ss_pred             hcCCCCccc-cccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402          158 LNLSLDDDN-KVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK  235 (372)
Q Consensus       158 ~~l~~~~~~-~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  235 (372)
                      .++...-.. -... -...++.++..+++.+. .++..+..++..++........- -....++.|+..+.+.+. .++.
T Consensus       581 ~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~~~-~vr~  657 (861)
T 2bpt_A          581 AAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK-YLETFSPYLLKALNQVDS-PVSI  657 (861)
T ss_dssp             HHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHHCTTS-HHHH
T ss_pred             HHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccccH-HHHH
Confidence            887644221 1111 23577888888887766 88999999999887543221111 113588999999976666 8999


Q ss_pred             HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhcC
Q 017402          236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTG  308 (372)
Q Consensus       236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~~  308 (372)
                      .|+.++..++..-...-.-.-...++.++..+.+.      ++.++.+++.++..-.. -..+..  ..++.+...+...
T Consensus       658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~  735 (861)
T 2bpt_A          658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTK  735 (861)
T ss_dssp             HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcC
Confidence            99999998875322111111124566677777421      66788888888764221 122222  3677777777642


Q ss_pred             C-----------hhHHHhHHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhcc----cHHHHHHHHHHHHHHhc
Q 017402          309 S-----------SRAVQCSLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDD----NEKVRRNANNLIQTLSG  367 (372)
Q Consensus       309 ~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~----~~~v~~~a~~~L~~l~~  367 (372)
                      .           ..++..++.++..++..-.+....+..  ..+++.+...+.+.    ++.+|+.|..+|..|..
T Consensus       736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            1           246677777887776432211111111  12455555555553    78999999999987643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.35  E-value=4.2e-06  Score=71.90  Aligned_cols=178  Identities=12%  Similarity=0.085  Sum_probs=127.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhh-cCCchHHHHHHHHHHHhhcCCCch-hHH
Q 017402          177 SRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQ-NGKLIREKKEAATALYALTSFPEN-RKR  253 (372)
Q Consensus       177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~-~~~  253 (372)
                      +.+.+.+.+.+-..|..|+..|..+... +....  .....+++.|..++. +.+. .++..|+.+|..|+..-.. -..
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~-~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNV-VLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHhhhHHH
Confidence            3477888888999999999999998765 22111  122468889999995 6665 8999999999999952211 111


Q ss_pred             HHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh-cCCH
Q 017402          254 VVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC-CCSQ  328 (372)
Q Consensus       254 i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~  328 (372)
                      . -...++.|+..+.+.    ++.+..+|.++.....    +   ...++.|...+++.++.+++.++..|..+. ..++
T Consensus        95 ~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           95 Y-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            1 113677777777544    6778888888877432    1   236778888888889999999999999954 4334


Q ss_pred             HH-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          329 EI-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       329 ~~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +. -...+. .+++.|+.++.+.+.++|..|..++..+-
T Consensus       167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            31 112222 48999999999999999999999997654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.34  E-value=3.2e-06  Score=89.74  Aligned_cols=224  Identities=12%  Similarity=0.098  Sum_probs=151.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc--
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK--  167 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~--  167 (372)
                      +.++..|.+  .++++|..|+..|..++..-+.  ..+  ..+++.|+..|.  +.++.++..++.+|..++..-...  
T Consensus        51 ~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           51 KMILKLLED--KNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            446666764  4889999999999999865432  111  235677777777  677888999999998876441111  


Q ss_pred             ----ccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          168 ----VGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       168 ----~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                          ..-.-...++.|...+. +++..++..|+.+|..++..... .........++.|+..+.+.+. .++..|+.+|.
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~-~vR~~a~~al~  200 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG-LLVNFHPSILTCLLPQLTSPRL-AVRKRTIIALG  200 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-SCTTTHHHHHHHHGGGGGCSSH-HHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence                00112467888889888 47889999999999998753211 1111114688888888887766 89999999999


Q ss_pred             hhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhH
Q 017402          243 ALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      .++......  +. ...++.++..+...     +..++.++..++.....  .+.. -...++.+...+...++.+++.+
T Consensus       201 ~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a  275 (1230)
T 1u6g_C          201 HLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYC  275 (1230)
T ss_dssp             HHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred             HHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            998754321  22 24678888877432     44567777777653211  2221 24578999999988888999999


Q ss_pred             HHHHHHHhcCCH
Q 017402          317 LFTLSCLCCCSQ  328 (372)
Q Consensus       317 ~~~L~~l~~~~~  328 (372)
                      +.++..++...+
T Consensus       276 ~~~l~~l~~~~~  287 (1230)
T 1u6g_C          276 IQAFESFVRRCP  287 (1230)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCh
Confidence            999988876533

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.34  E-value=7.6e-06  Score=67.82  Aligned_cols=181  Identities=14%  Similarity=0.064  Sum_probs=136.1

Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-c
Q 017402          173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP-E  249 (372)
Q Consensus       173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~  249 (372)
                      .+.+..|..+|...|+.++..+..+|..+-..-  ..+..+.  ...++.+++++++.++ .+.-.|+++|..|-.+. -
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQENE-KVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCB
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCC
Confidence            457888999998999999999999999998763  3333344  3799999999999888 99999999999877643 3


Q ss_pred             hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402          250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  325 (372)
                      ....+..  ++..|..++.++    .+.++..+.-+.-...       ..+.+..+.+++.+.+..++..|..+|.+++.
T Consensus       109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~  179 (265)
T 3b2a_A          109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLN  179 (265)
T ss_dssp             CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred             CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence            4444443  455677777554    6778777777722110       24567788888888999999999999999998


Q ss_pred             CCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          326 CSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       326 ~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .+.+-.-   -.+++.-+-+++++.++.+++.|..+|..+-..
T Consensus       180 ~S~D~~i---~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          180 SSADSGH---LTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GCSSCCC---GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             ccCCHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            7542211   134677788899999999999999998765443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.33  E-value=0.0001  Score=68.18  Aligned_cols=217  Identities=13%  Similarity=0.052  Sum_probs=145.2

Q ss_pred             hhHHHHHHHHHhcCCCCccccccccccC--ChHHHHHHHhc---------------C--ChHHHHHHHHHHHHhcccccc
Q 017402          147 FTLQEKALSLLLNLSLDDDNKVGLVAEG--AVSRVVAALRF---------------G--SPDCRAIAATIITSLAVVEVN  207 (372)
Q Consensus       147 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~~lv~~L~~---------------~--~~~~~~~a~~~L~~ls~~~~~  207 (372)
                      ...+..++.+|..|...++.|..+.+.+  .++.++.+++.               +  ..+++-.++-.++-|+..++.
T Consensus       182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~  261 (480)
T 1ho8_A          182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF  261 (480)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence            3456678888888888888888887643  46777655542               1  244567788999999988876


Q ss_pred             hhhhccccchH--HHHHHHhhcCCchHHHHHHHHHHHhhcCCC-ch----hH-HHHhcCchHHHHHHHhhh-------HH
Q 017402          208 KATIGDYPYAI--NALVSLLQNGKLIREKKEAATALYALTSFP-EN----RK-RVVSCGAVPILMRLADAG-------LE  272 (372)
Q Consensus       208 ~~~i~~~~g~i--~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~----~~-~i~~~g~v~~L~~ll~~~-------~e  272 (372)
                      ...+.. .+.+  +.|+..++...-..+..-++.+|.|+.... ..    .. .++..++ ..++..|...       .+
T Consensus       262 ~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e  339 (480)
T 1ho8_A          262 ANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ  339 (480)
T ss_dssp             HHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence            666665 4543  677777876432389999999999998754 11    22 2333444 5566666221       11


Q ss_pred             H-------HHHHHHHHhCCHhHHH------------------------HHHhc-cchHHHHHHHHhc----------CCh
Q 017402          273 R-------AVEVLSILVKCKEGRE------------------------EMMRV-SGCVGVFVKMLKT----------GSS  310 (372)
Q Consensus       273 ~-------a~~~L~~L~~~~~~~~------------------------~i~~~-~g~i~~L~~ll~~----------~~~  310 (372)
                      .       .-.....++..++...                        .+.+. -..+..|+++|.+          .++
T Consensus       340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~  419 (480)
T 1ho8_A          340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK  419 (480)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence            1       1111112222122111                        12221 1257899999974          245


Q ss_pred             hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          311 RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       311 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .+..-|+.=+..++.+.|+.+..+-+.|+=+.+++++.+.+++||..|..++..+
T Consensus       420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  474 (480)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            6667888888999999999999999999999999999999999999999999755

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.32  E-value=2.2e-07  Score=71.92  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=91.2

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+.++..|++.  ++.+|..|++.|.++..  +          .++.|+.+|+  +.++.++..|+.+|.++..      
T Consensus        14 ~~~l~~~L~~~--~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~--d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           14 LVPRGSHMADE--NKWVRRDVSTALSRMGD--E----------AFEPLLESLS--NEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             -------CCSS--CCCSSSSCCSSTTSCSS--T----------THHHHHHGGG--CSCHHHHHHHHHHHGGGCS------
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHhCc--h----------HHHHHHHHHc--CCCHHHHHHHHHHHHhcCC------
Confidence            35577778765  77888888888776532  1          2689999999  7899999999999999852      


Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                          ...++.|+..|++++..+|..|+++|..+.          . ..+++.|+.++++.+. .++..|..+|.++
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~-~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTG-FARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCT-HHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Confidence                345899999999999999999999999874          2 4689999999987776 8999999988653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.22  E-value=4.4e-05  Score=67.25  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=120.8

Q ss_pred             HHHHHHHhhcCCchHHHHHHHHHHHh-hcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHH
Q 017402          218 INALVSLLQNGKLIREKKEAATALYA-LTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMM  292 (372)
Q Consensus       218 i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~  292 (372)
                      +..+++-|.+.+. +.++.++.-|.. ++.+.+-...+++.+|+..|++...++    ...++.++.+|-.+..|...++
T Consensus       120 a~~iiekL~~~~~-~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          120 VNAILEKLYSSSG-PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHCCH-HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhcCCc-HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            4455566666555 778999999998 666788899999999999999999654    6779999999999999999999


Q ss_pred             hccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--------C--hhHHHHHHhh---cccHHHHHHHH
Q 017402          293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--------G--VLDICMGLLE---DDNEKVRRNAN  359 (372)
Q Consensus       293 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------g--~~~~l~~ll~---~~~~~v~~~a~  359 (372)
                      .+...|..|+.++.+....+.+.|+.+|..++.+++.+...+.++        |  -...|+.+++   +++.+++.+|.
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            888899999999998888889999999999998877555544332        2  3778889997   67899999998


Q ss_pred             HHHHHH
Q 017402          360 NLIQTL  365 (372)
Q Consensus       360 ~~L~~l  365 (372)
                      .++..+
T Consensus       279 tLIN~l  284 (339)
T 3dad_A          279 TLINKT  284 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.22  E-value=1.5e-05  Score=68.36  Aligned_cols=177  Identities=14%  Similarity=0.093  Sum_probs=127.2

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccch-hhh
Q 017402          135 AVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNK-ATI  211 (372)
Q Consensus       135 ~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~-~~i  211 (372)
                      .+.+.+.  +.+-..+..|+..|..+... +.....- -...++.|...+. +.+..++..|+.+|..|+..-... ...
T Consensus        19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4667777  78888999999999887654 2211111 1356778888884 889999999999999998543211 111


Q ss_pred             ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-C-H
Q 017402          212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-C-K  285 (372)
Q Consensus       212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~-~  285 (372)
                      .  ..+++.|+..+.+.+. .++..|..+|.++...... .     ..++.+...+++.    ++.++..|..+.. . +
T Consensus        96 ~--~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 A--SACVPSLLEKFKEKKP-NVVTALREAIDAIYASTSL-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H--HHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             H--HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            2  3589999999998877 9999999999999875431 1     2456677777543    6778888888544 3 2


Q ss_pred             h--HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          286 E--GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       286 ~--~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      .  ....+ .  ..++.|+.++.+.++.+|..|..++..++..
T Consensus       167 ~~~~~~~l-~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLL-K--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHH-H--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2  12222 2  3789999999889999999999999998854

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.18  E-value=0.00021  Score=56.94  Aligned_cols=210  Identities=15%  Similarity=0.160  Sum_probs=151.5

Q ss_pred             cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccc
Q 017402          130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVN  207 (372)
Q Consensus       130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~  207 (372)
                      ..++..++.+|.  ++-=.++.+|+.++.+++.. ++..+.     .+..|+-+++ +.........+++++.++..   
T Consensus        31 ~~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i---  100 (253)
T 2db0_A           31 ESVLKKLIELLD--DDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---  100 (253)
T ss_dssp             HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHh---
Confidence            356778888887  55567999999999998765 444333     3455666665 45777777788899988753   


Q ss_pred             hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCCH
Q 017402          208 KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKCK  285 (372)
Q Consensus       208 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~~  285 (372)
                      +..++.  +.+|.|..-.+-+++ +++.+-..+|..++. +++-...     ++.-+..++.+. ...=+.+|.-+..-.
T Consensus       101 ~Pe~v~--~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          101 KPELVK--SMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             CHHHHH--HHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             CHHHHH--hhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            333333  688888888888866 999999999998886 4443333     344577777655 445555566666655


Q ss_pred             hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          286 EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       286 ~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ++.-..+. + .+|.|..+|.+.++-++-.|+.+|.+++..++..|..+      ...++-+.+.++-++.+....|..+
T Consensus       173 en~~~yv~-P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          173 ENSFKYVN-P-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             TTTHHHHG-G-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             ccCccccC-c-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            56655555 2 79999999999999999999999999999988877654      3345556677888888777777644

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.11  E-value=0.00023  Score=69.78  Aligned_cols=249  Identities=15%  Similarity=0.126  Sum_probs=157.5

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      +.+...|.+...++-+|..|+-++.++...+++.   +...+.++.+.++|.  +.++.++..|+.+|..++.++..  .
T Consensus       149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~~--~  221 (621)
T 2vgl_A          149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNPE--E  221 (621)
T ss_dssp             THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhChH--H
Confidence            4566777433458999999999999999866632   222588999999998  78999999999999998754321  1


Q ss_pred             ccccCChHHHHHHHh----cC-------------ChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcCC-
Q 017402          170 LVAEGAVSRVVAALR----FG-------------SPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNGK-  229 (372)
Q Consensus       170 i~~~g~i~~lv~~L~----~~-------------~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~-  229 (372)
                      +  ...++.++..|.    .+             ++=.+......|..++..++  .+..+.   +.++.++..+.+.. 
T Consensus       222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~~~~k  296 (621)
T 2vgl_A          222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQEPPK  296 (621)
T ss_dssp             H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHHSCCS
T ss_pred             H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhccCcc
Confidence            1  234555555543    22             45567777777777765321  122121   24444444332111 


Q ss_pred             ---------chHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402          230 ---------LIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSG  296 (372)
Q Consensus       230 ---------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g  296 (372)
                               ...+.-+|+.++..+...++...     .++..|..++.+.    +-.++..|..++........+ .  .
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~--~  368 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K--T  368 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H--T
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H--H
Confidence                     12567778888888864332222     2556777777533    445777788887654322233 2  2


Q ss_pred             hHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ....++..+. +.+..++..|+.+|..++.  +++...     ++..|...+.+.+.+.+..+...+..+
T Consensus       369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          369 HIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             THHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5677778888 7888999999999999884  344333     455566666666777776666665543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.10  E-value=0.00083  Score=65.82  Aligned_cols=241  Identities=13%  Similarity=0.094  Sum_probs=158.6

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      .++-+|--|++.|.++..  ++..+     ..++.+.++|.+.+.++.++..|+-++..+....+  ..+...+.++.+.
T Consensus       123 ~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~  193 (621)
T 2vgl_A          123 RNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVV  193 (621)
T ss_dssp             CCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHH
T ss_pred             CCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHH
Confidence            377889899999999854  43332     35678888882117899999999999999865422  2222358999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH----HhhcC-C-----------chHHHHHHHHHHHhh
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS----LLQNG-K-----------LIREKKEAATALYAL  244 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~----ll~~~-~-----------~~~~~~~a~~aL~~L  244 (372)
                      ++|.+.++.++..|+.++..++..+..  .+   ...++.+++    ++..+ .           ++-.+...+..|..+
T Consensus       194 ~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~  268 (621)
T 2vgl_A          194 HLLNDQHLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY  268 (621)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS
T ss_pred             HHhCCCCccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh
Confidence            999988999999999999999765422  11   134444444    43322 1           235777788888888


Q ss_pred             cCCC--chhHHHHhcCchHHHHHHHh---------h---h---HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402          245 TSFP--ENRKRVVSCGAVPILMRLAD---------A---G---LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT  307 (372)
Q Consensus       245 ~~~~--~~~~~i~~~g~v~~L~~ll~---------~---~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~  307 (372)
                      +..+  +.+..+.+  .++.++..+.         +   +   .-.++.++..+...++    +..  .++..|..++.+
T Consensus       269 ~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~--~~~~~L~~~L~~  340 (621)
T 2vgl_A          269 PPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV--RACNQLGQFLQH  340 (621)
T ss_dssp             SSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH--HHHHHHHHHSSC
T ss_pred             CCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH----HHH--HHHHHHHHHhcC
Confidence            7643  33333333  3333433221         1   1   2234555555553322    222  367778888887


Q ss_pred             CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHh
Q 017402          308 GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       308 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~  366 (372)
                      .++.++-.|+..|..++...+..  .++ ......++..+. +.+..+|..|..+|..+.
T Consensus       341 ~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          341 RETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             SCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            88999999999999999775421  122 235677778788 888999999999987664

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=3e-06  Score=57.55  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             CCccccCCcccCCCceec-CCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      ....|.||.+++..-... .|+|.|...||.+|+... ..+||.|+....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            346799999988744433 699999999999999763 378999998765

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.06  E-value=3.6e-05  Score=67.76  Aligned_cols=150  Identities=17%  Similarity=0.088  Sum_probs=116.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      .+++..|.++  +.+.++.++..|..+-..+..+...|+..+|+..|+++..  ..+...+..++++|.+|-.+.+....
T Consensus       121 ~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          121 NAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA--AADHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH--hcChHHHHHHHHHHHHHHhccccccc
Confidence            4578888865  6777889999999944457789999999999999999998  77899999999999999888777766


Q ss_pred             cc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccc---------hHHHHHHHhhc--CCchHHHHH
Q 017402          170 LV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPY---------AINALVSLLQN--GKLIREKKE  236 (372)
Q Consensus       170 i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g---------~i~~Lv~ll~~--~~~~~~~~~  236 (372)
                      ++ ....|..+..++.+.+..+...|..+|..+....+....++. ...         -++.|+.+|.+  ..+.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            66 467889999999888899999999999999877653332222 011         25688999973  223377777


Q ss_pred             HHHHHHh
Q 017402          237 AATALYA  243 (372)
Q Consensus       237 a~~aL~~  243 (372)
                      |...|-.
T Consensus       277 amtLIN~  283 (339)
T 3dad_A          277 TVTLINK  283 (339)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.03  E-value=1.8e-06  Score=66.67  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402          130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA  209 (372)
Q Consensus       130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~  209 (372)
                      ...++.++.+|+  +.++.++..|+.+|..+...           .++.|+.+|+++++.+|..|+++|.++..      
T Consensus        11 ~~~~~~l~~~L~--~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMA--DENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CC--SSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhc--CCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456788888888  78888888888888776321           26999999999999999999999988752      


Q ss_pred             hhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHH
Q 017402          210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLS  279 (372)
Q Consensus       210 ~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~  279 (372)
                           ..+++.|+.++++++. .++..|+++|.++..          ..+++.|+.++++.    +..++.+|.
T Consensus        72 -----~~a~~~L~~~L~d~~~-~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSG-FVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCT-HHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                 3679999999998877 999999999998862          24678888888543    444554443

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.00  E-value=2.7e-06  Score=60.12  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             cccCCcccCCCce-ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402           10 KCPISLEIMSDPV-ILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus        10 ~C~ic~~~~~~Pv-~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .|++|.-.+..-. +++|+|.||..|+..|..++...||.|+.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            6999998877654 68999999999999999887889999998877

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.99  E-value=3.4e-05  Score=66.48  Aligned_cols=185  Identities=10%  Similarity=0.101  Sum_probs=127.1

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHH-HhhcChHHHHHHhh-cCCHHHHHHHH-hhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTK-LSKRDSASRRKLTE-SGAVSAVLNCL-KIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      .+-+.+.+.  +...|.+|+..|.. +..+.++....-.+ ...+..|...+ +  +.+..++..|+.+|..|+.+-  +
T Consensus        20 ~f~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l--~   93 (249)
T 2qk1_A           20 DFQERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKL--K   93 (249)
T ss_dssp             THHHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHH--C
T ss_pred             hHHHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhc--c
Confidence            566777654  89999999999999 87643321100111 13466677777 5  678889999999999998432  2


Q ss_pred             -cccc-c--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc-cccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          168 -VGLV-A--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG-DYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       168 -~~i~-~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                       ..+. .  .-.++.++..+++....++..+..++..+...-+. .... .....++.|+..+++.+. .++..++.+|.
T Consensus        94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~-~vk~~al~~l~  171 (249)
T 2qk1_A           94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTP-QIRMECTQLFN  171 (249)
T ss_dssp             TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSH-HHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCCh-HHHHHHHHHHH
Confidence             2232 2  34788999999888899999999998888754221 1111 024689999999998866 99999999999


Q ss_pred             hhcCCCch-hHH---HHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          243 ALTSFPEN-RKR---VVSCGAVPILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       243 ~L~~~~~~-~~~---i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      .+...... ...   .+....+|.|.+++++.    ++.|..+|..++.
T Consensus       172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            88753321 122   22246888899999544    6667777777664

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.94  E-value=9e-05  Score=63.84  Aligned_cols=184  Identities=11%  Similarity=0.049  Sum_probs=123.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHH-hcccc-cchhhhccccchHHHHHHHh-hcCCchHHHHHHHHHHHhhcCC---Cchh-
Q 017402          179 VVAALRFGSPDCRAIAATIITS-LAVVE-VNKATIGDYPYAINALVSLL-QNGKLIREKKEAATALYALTSF---PENR-  251 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~-ls~~~-~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~---~~~~-  251 (372)
                      +-..+.+.+-..|..|...|.. +.... +...........+..|.+.+ ++.+. .++..|+.+|..|+..   +... 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhcccccccH
Confidence            4556678888999999999998 86431 11110122236788999999 45555 8899999999999841   1111 


Q ss_pred             HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          252 KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      ....  -.++.++..+.+.    ++.+..+|..++..-.. ..... -...++.|...+++.++.+++.++.+|..++..
T Consensus       100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            2221  2677788877543    46666667766662111 00000 123677888888888999999999999998865


Q ss_pred             CHH---HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          327 SQE---ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       327 ~~~---~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      .+.   .-...+...+++.+..++.+.+.+||.+|..+|..+-
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            442   2122232468999999999999999999999987653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.90  E-value=0.00088  Score=67.43  Aligned_cols=218  Identities=15%  Similarity=0.047  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA  182 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~  182 (372)
                      +.+|..|...|+....++.       +..+++.|..+|.  +.+..+++.|+-+|..+-.+..+.      .++..|+..
T Consensus       451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~--dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~  515 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLY--NDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTY  515 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHH
Confidence            3455556666665544332       1124677888887  566666777887877654443332      245667776


Q ss_pred             Hh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402          183 LR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP  261 (372)
Q Consensus       183 L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~  261 (372)
                      +. ..+..++..++..|..+...        . ...++.+++.|....++-++..++.++.--.....+..      +|+
T Consensus       516 ~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq  580 (963)
T 4ady_A          516 SQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVK  580 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHH
T ss_pred             HhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHH
Confidence            54 45788888888888877533        2 45678888888766664666666666654444444433      456


Q ss_pred             HHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402          262 ILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDSR  335 (372)
Q Consensus       262 ~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  335 (372)
                      .|++.+.+.     +..|+-.|+.+...+.         ..++.++.++ ++.++.+|..|..+|..++.+++.      
T Consensus       581 ~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------  645 (963)
T 4ady_A          581 RLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------  645 (963)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence            677776332     5556777776654432         2466666655 568899999999999999876442      


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                       ..+++.|..++++.++.||..|..+|..+-
T Consensus       646 -~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          646 -QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence             125677888888999999999999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.89  E-value=0.00073  Score=68.69  Aligned_cols=245  Identities=13%  Similarity=0.120  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhhcCh---HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402          107 LESLTQLTKLSKRDS---ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL  183 (372)
Q Consensus       107 ~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L  183 (372)
                      ..|+..+..++....   ..-..+  .+.++.+++.+.  +....++..|-.++..+...- +...+  ...+|.|+..|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~-~~~a~--~~~~~~~~~~~  142 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAG--NKDKEIQSVASETLISIVNAV-NPVAI--KALLPHLTNAI  142 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHS-CGGGH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhC-CHHHH--HHHHHHHHHHh
Confidence            788888998885432   111222  256777777777  677888888777776654321 11222  56789999999


Q ss_pred             hcC-ChHHHHHHHHHHHHhcccccchhhh-ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402          184 RFG-SPDCRAIAATIITSLAVVEVNKATI-GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP  261 (372)
Q Consensus       184 ~~~-~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~  261 (372)
                      .+. .=..+..|+.++..|+...  ...+ .....+||.+.+.+.+... ++.+.|..++..+|..-+|+..   ...||
T Consensus       143 ~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~---~~~~~  216 (986)
T 2iw3_A          143 VETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI---ERFIP  216 (986)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT---GGGHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch---hhhHH
Confidence            765 4678889999999998654  2332 2335789999999998887 9999999999988875444432   13578


Q ss_pred             HHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC--CHHHHHHHHhc
Q 017402          262 ILMRLADAG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC--SQEICGDSRKE  337 (372)
Q Consensus       262 ~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~  337 (372)
                      .|++.+.++  ...++..|+.-....+--.....  =.+|.|.+-|...+...++.++.++-|+|+-  +|.....++-.
T Consensus       217 ~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~  294 (986)
T 2iw3_A          217 SLIQCIADPTEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK  294 (986)
T ss_dssp             HHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred             HHHHHhcChhhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence            888888665  44555544443332222111111  1366777777777888899999999999985  45444444432


Q ss_pred             ChhHHHHHHhhc-ccHHHHHHHHHHHHHHhc
Q 017402          338 GVLDICMGLLED-DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       338 g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~  367 (372)
                       .+|-+-...+. .++++|+.|.+++..|.+
T Consensus       295 -l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          295 -LLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             -THHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence             45555555544 689999999999988853

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.82  E-value=1.1e-05  Score=52.55  Aligned_cols=49  Identities=20%  Similarity=0.354  Sum_probs=39.8

Q ss_pred             CCCccccCCcccCCCceecCCc--h---HhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSSG--H---TFDRASIQRWLDS-GHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cg--h---~~c~~ci~~~~~~-~~~~CP~c~~~~~   54 (372)
                      .+...|.||++-..+|...||.  +   .|.+.|+.+|+.. ++.+||.|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3456899999887888878864  3   6899999999975 4678999998775

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.61  E-value=0.0069  Score=48.37  Aligned_cols=207  Identities=16%  Similarity=0.185  Sum_probs=136.0

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL  170 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  170 (372)
                      +++..|.++  -..++.+|+..+..++..-++....+     +..|+-+++. +....+-...+++++.++.....   +
T Consensus        36 ~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~k-sEaIpltqeIa~a~G~la~i~Pe---~  104 (253)
T 2db0_A           36 KLIELLDDD--LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKK-SEAIPLTQEIAKAFGQMAKEKPE---L  104 (253)
T ss_dssp             HHHHHTTCS--CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHCHH---H
T ss_pred             HHHHHhccH--HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhh-cccCchHHHHHHHHhHHHHhCHH---H
Confidence            466677654  56899999999999998777665554     5567777775 46666767777888877653211   1


Q ss_pred             cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch
Q 017402          171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN  250 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~  250 (372)
                      + .+.+|.+..-.+-+++.++.+...+|..++..+.  ..+   .+++.-+..++.+++. .-+-.|+..|..+..+.  
T Consensus       105 v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltskd~-~Dkl~aLnFi~alGen~--  175 (253)
T 2db0_A          105 V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSKNR-EDKLTALNFIEAMGENS--  175 (253)
T ss_dssp             H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCSSH-HHHHHHHHHHHTCCTTT--
T ss_pred             H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhccC--
Confidence            1 2345555555566899999999999999986542  222   3678888899998776 55656666665554432  


Q ss_pred             hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402          251 RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC  325 (372)
Q Consensus       251 ~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  325 (372)
                       ..-+ .-.+|.|..+|.+.    +..++.+|.+++.....-..      .+...++-+.+.|+.++......|..+..
T Consensus       176 -~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          176 -FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             -HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             -cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             2221 13577888888554    66789999999985333222      22223344556777777766666666553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.50  E-value=0.00088  Score=60.35  Aligned_cols=238  Identities=11%  Similarity=0.037  Sum_probs=137.1

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      .++.+.+.  +.+.|+=..-.+..++...++    +.  =++..+.+=+.  +.++-++-.|+++|.++...+-.     
T Consensus        73 v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~~~m~-----  137 (355)
T 3tjz_B           73 MTKLFQSN--DPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMT--GKEDSYRGPAVRALCQITDSTML-----  137 (355)
T ss_dssp             HHGGGGCC--CHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHH--SSCHHHHHHHHHHHHHHCCTTTH-----
T ss_pred             HHHHhcCC--CHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcC--CCcHhHHHHHHHHHhcCCCHHHH-----
Confidence            34455543  666776667777777764221    11  24566666677  78899999999999999644321     


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR  251 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  251 (372)
                       ....+.+.+.|.+.++.++..|+-+..+|....  .+.+ +  +.++.+-+++.+.+. -+.-+|+.+|..+...+.. 
T Consensus       138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v-~--~~~~~l~~ll~d~n~-~V~~~Al~lL~ei~~~d~~-  209 (355)
T 3tjz_B          138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV-K--RWVNEAQEAASSDNI-MVQYHALGLLYHVRKNDRL-  209 (355)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH-H--TTHHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCHH-
T ss_pred             -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH-H--HHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhhchH-
Confidence             234566777888899999999999999886433  3333 3  689999999988776 8888999999999876521 


Q ss_pred             HHHHhcCchHHHHHHHhhh---HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402          252 KRVVSCGAVPILMRLADAG---LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS  327 (372)
Q Consensus       252 ~~i~~~g~v~~L~~ll~~~---~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  327 (372)
                             ++..|+..+..+   .+- -+.+|..+......-..- .....++.|...+++.++.+.-.|+.++..+....
T Consensus       210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~  281 (355)
T 3tjz_B          210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS  281 (355)
T ss_dssp             -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred             -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence                   233344444332   111 223344333321111000 11234555556666777888888888877765421


Q ss_pred             HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ..    .. ..++..|..++.+.++++|-.|.+.|..+
T Consensus       282 ~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l  314 (355)
T 3tjz_B          282 AK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV  314 (355)
T ss_dssp             -----------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred             HH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            11    11 22355666677777777777776665544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.48  E-value=0.00092  Score=62.63  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=151.8

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHh--hc------CCChhHHHHHHHHHhcC
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLK--IH------SDGFTLQEKALSLLLNL  160 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~--~~------~~~~~~~~~a~~~L~~l  160 (372)
                      .|+.-|-+.  ..++|-.|+..|+.+.+......-.....  ...-.|+-+|.  ..      .....+|+.++.+|..+
T Consensus       178 ~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          178 QISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             HHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            344445444  78999999999999886543111111111  22223333332  11      12356899999999888


Q ss_pred             CCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402          161 SLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT  239 (372)
Q Consensus       161 ~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~  239 (372)
                       .+ ++.      ..++..++..+....=+++..+.-.|.++      ++.+....++++.++..|.+.++ +++..|+.
T Consensus       256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DD-DVRAVAAe  321 (800)
T 3oc3_A          256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDE-DIKLLSAE  321 (800)
T ss_dssp             -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSH-HHHHHHHH
T ss_pred             -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCccc-HHHHHHHH
Confidence             65 332      34455565555667788888888888888      22332246899999999999888 99999999


Q ss_pred             HHHhhcCCCchhHHHHhcCchHHHHHHH----hh------hHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC
Q 017402          240 ALYALTSFPENRKRVVSCGAVPILMRLA----DA------GLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS  309 (372)
Q Consensus       240 aL~~L~~~~~~~~~i~~~g~v~~L~~ll----~~------~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~  309 (372)
                      +|..++ .+         +.++.++..+    .+      +....+.+|+.|+..+..   .......+|.|...+.+.-
T Consensus       322 tLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtI  388 (800)
T 3oc3_A          322 LLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPV  388 (800)
T ss_dssp             HHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred             Hhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCc
Confidence            999998 22         3344444444    21      156778888888886631   1223467889999999899


Q ss_pred             hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHH-HHhhcccHHHHHHHHHHHH
Q 017402          310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM-GLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~-~ll~~~~~~v~~~a~~~L~  363 (372)
                      ..+|..++.+|..+.  ..+         .+..+. +++-..++++++.+..+-+
T Consensus       389 TSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          389 PEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999998776  111         222332 3555678888888877764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.42  E-value=1.3e-05  Score=70.21  Aligned_cols=48  Identities=19%  Similarity=0.517  Sum_probs=37.3

Q ss_pred             CCccccCCcccCCC----cee----cCCchHhhHHHHHHHHhcCC----------CCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSD----PVI----LSSGHTFDRASIQRWLDSGH----------RTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~----Pv~----~~cgh~~c~~ci~~~~~~~~----------~~CP~c~~~~~   54 (372)
                      ..-.|+||...+.+    |-.    ..|||.|+..|+.+|+....          .+||.|+.+++
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            34579999999887    422    36999999999999996411          36999998765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.19  E-value=0.076  Score=53.66  Aligned_cols=200  Identities=12%  Similarity=0.042  Sum_probs=125.0

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhh
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATI  211 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i  211 (372)
                      +..|+..+.+ +.+..++..++..|..+.....        ..++.+++.|.. .++.+|..++.++.--....      
T Consensus       509 i~~LL~~~~e-~~~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------  573 (963)
T 4ady_A          509 IHDMFTYSQE-TQHGNITRGLAVGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGT------  573 (963)
T ss_dssp             HHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------
T ss_pred             HHHHHHHHhc-cCcHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------
Confidence            4566666553 4567788888888887755433        345778888875 56667666666655322111      


Q ss_pred             ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-h----HHHHHHHHHHHhCCHh
Q 017402          212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA-G----LERAVEVLSILVKCKE  286 (372)
Q Consensus       212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-~----~e~a~~~L~~L~~~~~  286 (372)
                      +. ..+|+.|++.+.+..+..++..|+.+|..+...++        ..++.++.+|.. .    +..+..+|+.++....
T Consensus       574 Gn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~  644 (963)
T 4ady_A          574 GN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG  644 (963)
T ss_dssp             CC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             CC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence            12 35788788777765544899999999998876443        245666665532 2    5567788888876422


Q ss_pred             HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHH-HHHhcChhHHHHHHhhc--ccHHHHHHHHHHHH
Q 017402          287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG-DSRKEGVLDICMGLLED--DNEKVRRNANNLIQ  363 (372)
Q Consensus       287 ~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~  363 (372)
                      .       ..++..|..++.+.+..+++.|+.+|..+-....+... .+  .+....|.....+  .+..++-.|+-+.-
T Consensus       645 ~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqG  715 (963)
T 4ady_A          645 L-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQG  715 (963)
T ss_dssp             C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             c-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            1       22567777788888999999999999998765333200 11  1233445555543  34556665555544


Q ss_pred             HH
Q 017402          364 TL  365 (372)
Q Consensus       364 ~l  365 (372)
                      .+
T Consensus       716 ll  717 (963)
T 4ady_A          716 IM  717 (963)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.15  E-value=0.14  Score=47.40  Aligned_cols=230  Identities=14%  Similarity=0.178  Sum_probs=140.7

Q ss_pred             hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---ccccc-cccC-ChHHHHHHHhcCC-hHHHHHHHHHHHHhc
Q 017402          129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---NKVGL-VAEG-AVSRVVAALRFGS-PDCRAIAATIITSLA  202 (372)
Q Consensus       129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~i-~~~g-~i~~lv~~L~~~~-~~~~~~a~~~L~~ls  202 (372)
                      ...++..++.+|.. ..+.++....+..+..|..++.   .+..+ .+.. ....+.....+.+ .-....+..++..++
T Consensus        75 ~~~~~~~~l~lL~~-~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~  153 (480)
T 1ho8_A           75 NGKTLIPLIHLLST-SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV  153 (480)
T ss_dssp             SSTTHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHhh-cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            34578889999985 3677888888888877665543   22222 2222 2222222222333 334455555555554


Q ss_pred             ccccchhhhccccchHH------HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC--chHHHHHHHhh-----
Q 017402          203 VVEVNKATIGDYPYAIN------ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG--AVPILMRLADA-----  269 (372)
Q Consensus       203 ~~~~~~~~i~~~~g~i~------~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g--~v~~L~~ll~~-----  269 (372)
                      .....     . ...++      -++..|+.....+.+.-++.+|..|...++.|..+.+.+  .++.+++++..     
T Consensus       154 ~~~~~-----~-~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~  227 (480)
T 1ho8_A          154 QNGLH-----N-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQ  227 (480)
T ss_dssp             STTTC-----C-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             ccCCc-----c-HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccc
Confidence            22211     1 23333      344455553322556678999999999999999998663  46777765521     


Q ss_pred             -------------h---HHHHHHHHHHHhCCHhHHHHHHhccchH--HHHHHHHhc-CChhHHHhHHHHHHHHhcCCH--
Q 017402          270 -------------G---LERAVEVLSILVKCKEGREEMMRVSGCV--GVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ--  328 (372)
Q Consensus       270 -------------~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i--~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~--  328 (372)
                                   +   .=.++.+++.|+..++..+.+.. .+..  ..|+.+++. ..+++.+-++.+|.|+...++  
T Consensus       228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~  306 (480)
T 1ho8_A          228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ  306 (480)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred             cccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh
Confidence                         1   22467889999999888887776 4433  567777765 568888999999999887652  


Q ss_pred             --HHHH-HHHhcChhHHHHHHhhc---ccHHHHHHHHHHHHHHhc
Q 017402          329 --EICG-DSRKEGVLDICMGLLED---DNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       329 --~~~~-~~~~~g~~~~l~~ll~~---~~~~v~~~a~~~L~~l~~  367 (372)
                        .... .++..++++ ++..++.   +++++.+--..+...|.+
T Consensus       307 ~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~  350 (480)
T 1ho8_A          307 HKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILEN  350 (480)
T ss_dssp             HHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Confidence              2223 344455655 5555543   477777766666555543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.07  E-value=0.023  Score=47.87  Aligned_cols=169  Identities=15%  Similarity=0.107  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCC--chhHHHHhcCchHHHHH
Q 017402          192 AIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL----IREKKEAATALYALTSFP--ENRKRVVSCGAVPILMR  265 (372)
Q Consensus       192 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~  265 (372)
                      -+|...|..++++++.+..+.. +...-.|...|+..+.    .-++-.++++++.|...+  +....+.+.+.||..++
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            4667778888988899888877 5666666666665432    257778999999998754  46677778999999999


Q ss_pred             HHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH--------hcCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402          266 LADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML--------KTGSSRAVQCSLFTLSCLCCCSQEICGD  333 (372)
Q Consensus       266 ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll--------~~~~~~~~~~a~~~L~~l~~~~~~~~~~  333 (372)
                      .++.|    +-.|..++..+-.++.|-..++.+..-+..+..++        ...+++..++.+++-..++.+ +..+..
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~a  231 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREA  231 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHH
Confidence            99877    44688899999999999888777543332222222        347788889999999999976 888877


Q ss_pred             HHhcChhHHH------HHHhhcccHHHHHHHHHHHHHH
Q 017402          334 SRKEGVLDIC------MGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       334 ~~~~g~~~~l------~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      +.+.  +|.-      -.++ .+++.+|+--..++.++
T Consensus       232 L~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          232 LRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence            7652  2211      1222 25667777766666655

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.05  E-value=0.033  Score=57.45  Aligned_cols=251  Identities=11%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----CCChhHHHHHHHHHhcCCCCccccc-ccc---c-c
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH----SDGFTLQEKALSLLLNLSLDDDNKV-GLV---A-E  173 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~~~~~~~a~~~L~~l~~~~~~~~-~i~---~-~  173 (372)
                      ...|..|...|..++...+   +.+.. -.++.+...+...    +.+-..++.|+.++..++..-.... .+.   . .
T Consensus       375 ~s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~  450 (960)
T 1wa5_C          375 DTRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             cCcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            3467777888888887433   22211 1233333444421    1334578889999988865421111 111   0 0


Q ss_pred             CChHH----HHHHHhcC---ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          174 GAVSR----VVAALRFG---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       174 g~i~~----lv~~L~~~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ...+.    ++..|.+.   ++-+|..|++++..++..- .... .  ..+++.+++.|.+.+. .++..|+.+|.+++.
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-l--~~~l~~l~~~L~d~~~-~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-L--IELMPILATFLQTDEY-VVYTYAAITIEKILT  525 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-H--HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-H--HHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHh
Confidence            23333    33344555   7889999999999998642 1221 1  3678888888887654 899999999999987


Q ss_pred             CCc---------hhHHHHh--cCchHHHHHHHhh---------hHHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHH
Q 017402          247 FPE---------NRKRVVS--CGAVPILMRLADA---------GLERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKML  305 (372)
Q Consensus       247 ~~~---------~~~~i~~--~g~v~~L~~ll~~---------~~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll  305 (372)
                      ..+         .+..+..  ...++.|+.+++.         ..+.++.+|..++....  +.+.. ....++.|...+
T Consensus       526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~--~~~~p~~~~l~~~L~~~l  603 (960)
T 1wa5_C          526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE--DSIQPLFPQLLAQFIEIV  603 (960)
T ss_dssp             CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT--TTTGGGHHHHHHHHHHHH
T ss_pred             cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHH
Confidence            421         2333321  1345556666644         13556666666654211  11111 012344444444


Q ss_pred             hc-----CChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          306 KT-----GSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       306 ~~-----~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ..     .++......+.+|..++.. +++....+. ..+++.+..+++.+..+....+..++..+
T Consensus       604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence            32     2345555677777777664 344433333 34778888888776555666666665544

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.72  E-value=0.15  Score=45.79  Aligned_cols=238  Identities=14%  Similarity=0.049  Sum_probs=136.2

Q ss_pred             hhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC
Q 017402           96 LTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA  175 (372)
Q Consensus        96 L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  175 (372)
                      +++...++..+.+++..+-.+-...+.+-+.-. ...-..+++++.  +.+.+.+....-.+.+++..++.  .+   =+
T Consensus        34 fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~--s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv  105 (355)
T 3tjz_B           34 FNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQ--SNDPTLRRMCYLTIKEMSCIAED--VI---IV  105 (355)
T ss_dssp             TTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGG--CCCHHHHHHHHHHHHHHTTTSSC--GG---GG
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCHHH--HH---HH
Confidence            333333455545566555544433322211111 112344566777  78889998888888888766322  12   24


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402          176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV  255 (372)
Q Consensus       176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~  255 (372)
                      +..+.+=+.++++-+|..|.++|.++...+     +.+  ...+.+-..+.+.++ -+++.|+.+...|......   ++
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~--~l~~~lk~~L~d~~p-yVRk~A~l~~~kL~~~~pe---~v  174 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ--AIERYMKQAIVDKVP-SVSSSALVSSLHLLKCSFD---VV  174 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH--HHHHHHHHHHTCSSH-HHHHHHHHHHHHHTTTCHH---HH
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH--HHHHHHHHHcCCCCH-HHHHHHHHHHHHHhccCHH---HH
Confidence            667778888899999999999999996433     222  567777788888777 9999999999999864322   23


Q ss_pred             hcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC---ChhHHHhHHHHHHHHhcCC-
Q 017402          256 SCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG---SSRAVQCSLFTLSCLCCCS-  327 (372)
Q Consensus       256 ~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-  327 (372)
                      + +.+..+-+++.+.    .-+|+.+|..+...+.         ..+..|+..+..+   ++-.+-.-++.+..++..+ 
T Consensus       175 ~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~  244 (355)
T 3tjz_B          175 K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED  244 (355)
T ss_dssp             H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred             H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence            3 5777888888443    5578888888887531         1445555555443   2333322222222222222 


Q ss_pred             HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ++     .....++.+...+++.++-|.-.|++.+-.+..
T Consensus       245 ~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          245 GS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             -----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             hh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence            11     223466777777777777777666666654543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.68  E-value=0.066  Score=54.59  Aligned_cols=215  Identities=13%  Similarity=0.094  Sum_probs=138.0

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      |.++..+.+.  ...+|..|-.++..+...-+.+.  +  ...+|.|+..|.+ ...=..+..|+.+|..|+...  ...
T Consensus        98 ~~~~~~~~dk--~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~--~~~  168 (986)
T 2iw3_A           98 PAICTNAGNK--DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAA--KDQ  168 (986)
T ss_dssp             HHHHHHTTCS--SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHS--HHH
T ss_pred             HHHHHHhcCC--chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHh--HHH
Confidence            3344444433  56778777777777775433222  2  4468999999973 234578899999999987643  233


Q ss_pred             ccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          170 LVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       170 i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      +..  ...||.+...+-+--++++..|..++..++..-.|++.    ...||.|++.+.+++.   .-.+...|+.-+..
T Consensus       169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~---~~~~~~~l~~~tfv  241 (986)
T 2iw3_A          169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE---VPETVHLLGATTFV  241 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH---HHHHHHHHTTCCCC
T ss_pred             HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh---hHHHHHHhhcCeeE
Confidence            332  56788888888777899999999999999977777776    4689999999998743   44445555444433


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC---HhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC---KEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFT  319 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~---~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~  319 (372)
                      .+.-.-... =.+|.|.+-|...    ..+++-++.|||+-   +.....+..  ..+|.|-+.... .+|++|+.|..+
T Consensus       242 ~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~~~a  318 (986)
T 2iw3_A          242 AEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVTLRA  318 (986)
T ss_dssp             SCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred             eeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHHHHH
Confidence            331111100 0233344444221    56788889999984   444444444  467777666655 678888877777


Q ss_pred             HHHH
Q 017402          320 LSCL  323 (372)
Q Consensus       320 L~~l  323 (372)
                      +..|
T Consensus       319 ~~~l  322 (986)
T 2iw3_A          319 LKTL  322 (986)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7666

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.67  E-value=0.0006  Score=49.65  Aligned_cols=34  Identities=9%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             CCccccCCcc-cCCCcee--cCCchHhhHHHHHHHHh
Q 017402            7 DDFKCPISLE-IMSDPVI--LSSGHTFDRASIQRWLD   40 (372)
Q Consensus         7 ~~~~C~ic~~-~~~~Pv~--~~cgh~~c~~ci~~~~~   40 (372)
                      +++.|++|.+ ++.+|+.  +.|+|+||+.|+..+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4688999996 4789998  89999999999998443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.63  E-value=0.01  Score=50.04  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC---hhHHHHHHHHHhcCCCCccc--cccccccCChHHHHH
Q 017402          107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG---FTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVVA  181 (372)
Q Consensus       107 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv~  181 (372)
                      -+|+..|+-+|. +++.|..|.++++.-.|..+|...+.+   ..++-.++++++.|...++.  ..-+.+.+.+|..++
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            467777788887 778999999999888899999843333   34789999999998866442  223346889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHH-------HHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINA-------LVSLLQNGKLIREKKEAATALYALTSFPENRKRV  254 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~-------Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i  254 (372)
                      .++.|+.-.|..|+.++..+-.++.+...+.....-+..       ++.-+....++.+.++..++-..|+.++..+..+
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL  232 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL  232 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999999999998888777666553333333       3333333334488888888888888888777766


Q ss_pred             H
Q 017402          255 V  255 (372)
Q Consensus       255 ~  255 (372)
                      .
T Consensus       233 ~  233 (268)
T 2fv2_A          233 R  233 (268)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.32  E-value=0.1  Score=45.85  Aligned_cols=143  Identities=14%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh----h----HHHHHHHHHHHhCCHhHHHHH
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA----G----LERAVEVLSILVKCKEGREEM  291 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~----~----~e~a~~~L~~L~~~~~~~~~i  291 (372)
                      .+...+.+...+..+.-++++++|+..++.++..+...  ...+++.+.+    .    +-.+..++.|++.........
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~  228 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI  228 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence            44444444333467889999999999999998887753  3445555421    1    334566777777632110000


Q ss_pred             HhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHH
Q 017402          292 MRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQT  364 (372)
Q Consensus       292 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~  364 (372)
                      -.....+..+..++.. .+++....++.+|.++...+.+..+.....|+...+-.+... ...+|.+.+..+|..
T Consensus       229 ~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          229 EGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            0001133444444533 567778888899999998777777666667777766666665 477888988888754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.09  E-value=0.003  Score=53.51  Aligned_cols=47  Identities=15%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             CccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~   54 (372)
                      -..|.+|.++...-+..+ |++.|+..|+.+|+... ...||.|+...+
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            456999999877655554 99999999999999753 468999998765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.45  E-value=0.11  Score=45.65  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH-hh--cCCChhHHHHHHHHHhcCCCCcccccccccc--CChHHH
Q 017402          105 SKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL-KI--HSDGFTLQEKALSLLLNLSLDDDNKVGLVAE--GAVSRV  179 (372)
Q Consensus       105 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~l  179 (372)
                      .+.-++..++-++. ++.....+.+.+.-..++..+ ..  ....+..+-.+++++.|+..++..+..+...  .+++.+
T Consensus       118 ~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~  196 (304)
T 3ebb_A          118 IVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA  196 (304)
T ss_dssp             TCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence            34444555555444 565555565543334444322 21  1234567999999999999888887766642  344444


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402          180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS  256 (372)
Q Consensus       180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~  256 (372)
                      ...+...+..++..++.++.|++.........-....++..+..++....+.++.-.++.+|.+|...+.....+.+
T Consensus       197 ~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak  273 (304)
T 3ebb_A          197 IELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK  273 (304)
T ss_dssp             HGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            44444568999999999999999754211111111235555556666555558899999999999976544444443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.31  E-value=0.28  Score=44.67  Aligned_cols=177  Identities=16%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHH
Q 017402           86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALS  155 (372)
Q Consensus        86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~  155 (372)
                      ...+...+..|.++.+ .+.....+..|+..-.. ...--+.|+ .+|+..|+++|...         ..+...+..+++
T Consensus        65 ~~sP~~yi~~L~~~~~-~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~  142 (383)
T 3eg5_B           65 SRSAMMYIQELRSGLR-DMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR  142 (383)
T ss_dssp             CCCHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhccc-chhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence            3445668888887632 33233455555543333 344556676 78899999998631         123467888899


Q ss_pred             HHhcCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--c-hhhhcc---------ccchHHHHH
Q 017402          156 LLLNLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--N-KATIGD---------YPYAINALV  222 (372)
Q Consensus       156 ~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~~---------~~g~i~~Lv  222 (372)
                      +|..+.....+...+.+ ...+..|+..|.+.++.++..+..+|..++..++  + ...+.+         ...-+..++
T Consensus       143 CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv  222 (383)
T 3eg5_B          143 CLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL  222 (383)
T ss_dssp             HHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            99888777666665554 6789999999988999999999999988886553  2 222211         023356677


Q ss_pred             HHhhcCCchHHHHHHHHHHHh-hcCCCc---hh----HHHHhcCchHHHHH
Q 017402          223 SLLQNGKLIREKKEAATALYA-LTSFPE---NR----KRVVSCGAVPILMR  265 (372)
Q Consensus       223 ~ll~~~~~~~~~~~a~~aL~~-L~~~~~---~~----~~i~~~g~v~~L~~  265 (372)
                      +.+++....+.+. ++..+.| +....+   .|    ..+...|..+.+-+
T Consensus       223 ~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~  272 (383)
T 3eg5_B          223 DGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE  272 (383)
T ss_dssp             HTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence            7777654424444 4444444 444332   33    33445555554443

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.014  Score=52.03  Aligned_cols=64  Identities=20%  Similarity=0.367  Sum_probs=49.8

Q ss_pred             CccccCCcccCCCcee-cCCchH--hhHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHT--FDRASIQRWLD-SGHRTCPITKLPLPDQPSLIPNHALRSLISNF   72 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~   72 (372)
                      .+.||+....|..|+. ..|.|.  |+..-+..... .....||.|.+.+. ..++..+..+..++...
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQNC  316 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTTS
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHhc
Confidence            4789999999999996 569997  66554444433 34678999999998 88899998888766543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.08  E-value=0.32  Score=42.92  Aligned_cols=116  Identities=13%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             HHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402          150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK  229 (372)
Q Consensus       150 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~  229 (372)
                      ...+...|.-|..+.+...-+++.+|+..+...+.-++.++.......|...|........  .....+|.++..+....
T Consensus       260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCC
Confidence            3444555555544455667889999999999999999999999999999998754333222  22478999999988654


Q ss_pred             chHHHHHHHHHHHhhcCCCc-hhHHHHhcCchHHHHHHH
Q 017402          230 LIREKKEAATALYALTSFPE-NRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       230 ~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll  267 (372)
                      +.++.-...+.|+|...+.. .++..+..|+|+.|-+.+
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            44889999999999998775 667778899999988877

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.03  E-value=1.7  Score=44.60  Aligned_cols=207  Identities=15%  Similarity=0.071  Sum_probs=113.9

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH---h--cCChHHHHHHHHHHHHhcccccchhhhccccchHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL---R--FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN  219 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L---~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~  219 (372)
                      .+-..++.++.++..++..-....    ...++.++.++   .  +.++.++..+++++..++..-......  ...+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence            344578999999999987622111    23455555544   2  237889999999999988543211122  136788


Q ss_pred             HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh--cCchHHHHHHHhhh------HHHHHHHHHHHhCC--HhHHH
Q 017402          220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS--CGAVPILMRLADAG------LERAVEVLSILVKC--KEGRE  289 (372)
Q Consensus       220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~L~~ll~~~------~e~a~~~L~~L~~~--~~~~~  289 (372)
                      .|+..+ +  . .++..|+.++.+++..  .+..+..  .+.+..+..+++.+      .+.+..++..++..  ++...
T Consensus       550 ~l~~~l-~--~-~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~  623 (971)
T 2x1g_F          550 LLVRGL-N--S-SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP  623 (971)
T ss_dssp             HHHHHH-H--S-SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHh-C--h-HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            888888 3  3 7899999999999942  3333331  13445555556442      44566666666542  23333


Q ss_pred             HHHhccchHHHHHHHH----hcC--ChhHHHhHHHHHHHHhcCCH-------HHH------H--HHHhcChhHHHHHHhh
Q 017402          290 EMMRVSGCVGVFVKML----KTG--SSRAVQCSLFTLSCLCCCSQ-------EIC------G--DSRKEGVLDICMGLLE  348 (372)
Q Consensus       290 ~i~~~~g~i~~L~~ll----~~~--~~~~~~~a~~~L~~l~~~~~-------~~~------~--~~~~~g~~~~l~~ll~  348 (372)
                      ....  ..++.+...+    +..  ++..+......+..++..-.       +..      .  .-....+++.+..++.
T Consensus       624 ~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~  701 (971)
T 2x1g_F          624 KYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE  701 (971)
T ss_dssp             HHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence            3332  2344444433    222  33334444444444432100       000      0  0112346777777776


Q ss_pred             c--ccHHHHHHHHHHHHHH
Q 017402          349 D--DNEKVRRNANNLIQTL  365 (372)
Q Consensus       349 ~--~~~~v~~~a~~~L~~l  365 (372)
                      .  .++.+.+.+.++++.+
T Consensus       702 ~~~~~~~v~e~~~~~~~~~  720 (971)
T 2x1g_F          702 MWVEEIDVLEAACSAMKHA  720 (971)
T ss_dssp             HTTTCHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            4  3678999999988764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.94  E-value=1.7  Score=38.20  Aligned_cols=197  Identities=16%  Similarity=0.130  Sum_probs=141.7

Q ss_pred             cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-ch----hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV-NK----ATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~-~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      .+.+.+.+..|+..|..=+.+.|..++.+..++-.... .+    ..+.....++..|+.--.   .+++.-.+-..|+.
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHH
Confidence            34567889999999988899999999998888876442 11    223332445555554433   23667778888888


Q ss_pred             hcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhH
Q 017402          244 LTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       244 L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      ...++.....+...+.+-.+.+.++.+    ...|...+.. |..+..--..+..  .+..+..+-.++.+++-..++.+
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            888888888888888888888888655    3344444443 3445555455554  23467778888888888889999


Q ss_pred             HHHHHHHhcCCHHHHHHHHh----cChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          317 LFTLSCLCCCSQEICGDSRK----EGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      +..|..+-.. +.+...|.+    ..-++.++.+|++.+..++-.|=.+.+.+.-++
T Consensus       230 lKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          230 LKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            9999999876 655555543    336999999999999999999999888876554

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=94.71  E-value=0.032  Score=38.13  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             ccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      -.|.||.+-.-     +|.+.  .|+...|+.|++--..+++..||.|+..+.
T Consensus        17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            57999998532     34333  488889999999888888999999998876

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.69  E-value=1.8  Score=44.39  Aligned_cols=207  Identities=10%  Similarity=0.065  Sum_probs=117.6

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh---cCChHHHHHHHHHHHHhcccccchhhhccccchHHHH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR---FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINAL  221 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~L  221 (372)
                      .+-..++.++.+|..++..-...    ....++.++..+.   .+++.++..+++++..++..-.......  ..+++.|
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHH
Confidence            45567888999999988662211    1344566666552   2578899999999999885422111222  3688999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh--cCchHHHHHHHhhh------HHHHHHHHHHHhCC--HhHHHHH
Q 017402          222 VSLLQNGKLIREKKEAATALYALTSFPENRKRVVS--CGAVPILMRLADAG------LERAVEVLSILVKC--KEGREEM  291 (372)
Q Consensus       222 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~L~~ll~~~------~e~a~~~L~~L~~~--~~~~~~i  291 (372)
                      +..+.+  . .++..|+.+|.+++..  .+..+..  .+.++.|..++..+      .+.+..+++.++..  .+.....
T Consensus       535 ~~~l~~--~-~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          535 LHALGN--P-ELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHTTC--G-GGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHhCC--c-hHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            988865  3 8999999999999842  2233321  12334444455431      45567777777653  2334333


Q ss_pred             HhccchHHHHHHHHh----c-CChhHHH---hHHHHHHHHhcC-C---H------------------HHHHHHHhcChhH
Q 017402          292 MRVSGCVGVFVKMLK----T-GSSRAVQ---CSLFTLSCLCCC-S---Q------------------EICGDSRKEGVLD  341 (372)
Q Consensus       292 ~~~~g~i~~L~~ll~----~-~~~~~~~---~a~~~L~~l~~~-~---~------------------~~~~~~~~~g~~~  341 (372)
                      ..  ..++.+...+.    . .++..+.   ....+|..+... +   +                  +.... ....+.+
T Consensus       610 ~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  686 (963)
T 2x19_B          610 LH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQ  686 (963)
T ss_dssp             HH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHH
Confidence            33  25555555443    2 2444444   233333333221 0   0                  00111 2233566


Q ss_pred             HHHHHhhc--ccHHHHHHHHHHHHHH
Q 017402          342 ICMGLLED--DNEKVRRNANNLIQTL  365 (372)
Q Consensus       342 ~l~~ll~~--~~~~v~~~a~~~L~~l  365 (372)
                      .+..+++.  .+..+.+.+..+++.+
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~  712 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKS  712 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHH
Confidence            66666654  4678888888888765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.58  E-value=0.51  Score=39.66  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=78.0

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHh-hcChHHHHHHhhcCCHHHHHHHHhhcC---------CChhHHHHHHHHHhcC
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLS-KRDSASRRKLTESGAVSAVLNCLKIHS---------DGFTLQEKALSLLLNL  160 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~lL~~~~---------~~~~~~~~a~~~L~~l  160 (372)
                      ..++.|.++. +.+.-.+-+..|+..- .....--+.| ..||+..|++.|....         .+.+.+..++.+|..+
T Consensus         4 ~yi~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal   81 (233)
T 2f31_A            4 MYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   81 (233)
T ss_dssp             HHHHHHTTTC-CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-chHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence            4677777653 2332233444444322 3334456667 5788999999986420         1345688888999888


Q ss_pred             CCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402          161 SLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV  206 (372)
Q Consensus       161 ~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~  206 (372)
                      .....+...+.+ .+++..++..|.+.++.++..+...|..++..++
T Consensus        82 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~  128 (233)
T 2f31_A           82 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ  128 (233)
T ss_dssp             TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred             hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence            777666665554 6789999999988899999999999988886653

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.53  E-value=0.024  Score=50.36  Aligned_cols=63  Identities=19%  Similarity=0.361  Sum_probs=49.8

Q ss_pred             CccccCCcccCCCcee-cCCchH--hhHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 017402            8 DFKCPISLEIMSDPVI-LSSGHT--FDRASIQRWLD-SGHRTCPITKLPLPDQPSLIPNHALRSLISN   71 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~   71 (372)
                      .+.||+....|+.|+. ..|.|.  |+..-+..... .+...||.|++... ..++..+..+...+..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHh
Confidence            5789999999999996 569997  66655544443 34578999999998 8889988888877654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.25  E-value=0.36  Score=42.51  Aligned_cols=183  Identities=12%  Similarity=0.104  Sum_probs=134.7

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~  168 (372)
                      |+++..|-++-++++.-..+-..|+...+ .+...+.+...+.+..+++.+.  ..+-++...|..++..+ ..+.....
T Consensus       124 peil~~L~~gYe~~diAl~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lva  200 (341)
T 1upk_A          124 QNILFMLLKGYESPEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSA  200 (341)
T ss_dssp             THHHHHHHHGGGSTTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHHHhhccchhHhHHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHH
Confidence            67888888777788888888888888877 5667777778777888888888  78889999999998875 34433322


Q ss_pred             ccccc---CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh---hccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          169 GLVAE---GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT---IGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       169 ~i~~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .+...   ..+...-++|.+++.-++.++...|+.+-.+..|...   .+....-+..++.+|++.+. .++-+|..+..
T Consensus       201 efL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk-~Iq~EAFhVFK  279 (341)
T 1upk_A          201 EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR-NIQFEAFHVFK  279 (341)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH-HHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchh-chhhhhhhhee
Confidence            33332   3566777888999999999999999999887765433   23336789999999999877 89999999887


Q ss_pred             hhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCH
Q 017402          243 ALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCK  285 (372)
Q Consensus       243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~  285 (372)
                      -...++.         --+++.++|...+++.+..|.++-.+.
T Consensus       280 vFVANP~---------K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          280 VFVANPN---------KTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHHHCSS---------CCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             eeeeCCC---------CChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6555543         223445555555677777777776543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.17  E-value=1.1  Score=39.62  Aligned_cols=133  Identities=13%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh-
Q 017402          106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR-  184 (372)
Q Consensus       106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~-  184 (372)
                      ..+++..| +|...+...-+.+++.+|+..+...+.  ..+.++...+.+.|...+....... .--...+|.+++.++ 
T Consensus       260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhcc
Confidence            34444444 455556668899999999999999999  8999999999999998875433222 112467888888886 


Q ss_pred             cCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC------CchHHHHHHHHHHHh
Q 017402          185 FGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG------KLIREKKEAATALYA  243 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~  243 (372)
                      +++.++.-...+.|.|...+. ..|+.... .|+|+.|-..+...      .+..-++.|++.++|
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            578999999999999997766 45555444 59999998876532      233445555554443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.46  Score=41.01  Aligned_cols=181  Identities=16%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHH--HHHH-hhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc---
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSAS--RRKL-TES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD---  164 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i-~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~---  164 (372)
                      +-+.|.+.  +...|.+|+..|..+....+..  .... ... ...+.+-..+.  +.+..++..++.+|..++..-   
T Consensus        14 l~e~l~sk--~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~--DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           14 LEERLTYK--LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT--DSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             HHHHTTCS--SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT--CSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHhcccC--cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhh
Confidence            55677765  8999999999999887643311  1111 112 23555667777  789999999999988765431   


Q ss_pred             ccccc---ccccCChHHHHHH-HhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          165 DNKVG---LVAEGAVSRVVAA-LRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       165 ~~~~~---i~~~g~i~~lv~~-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      .....   ..-...++.|+.- |.+....++..+..++..+......     . ...++.++..+...++ .++..++..
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~-~~~~e~l~~~l~~Knp-kv~~~~l~~  162 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----I-TQSVELVIPFFEKKLP-KLIAAAANC  162 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----S-HHHHHHHGGGGGCSCH-HHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----H-HHHHHHHHHHHhccCH-HHHHHHHHH
Confidence            11111   1123466777765 6667788888888888777532211     1 2356677777777776 888888888


Q ss_pred             HHhhcCC--Cc--hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          241 LYALTSF--PE--NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       241 L~~L~~~--~~--~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                      |..+-..  ..  +....+. .+++.+..++.+.    ++.|..++..+-..
T Consensus       163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            8876431  11  1111111 2344556666433    66777777777653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.57  E-value=0.22  Score=47.06  Aligned_cols=183  Identities=10%  Similarity=0.081  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc-ccCChHHHHH
Q 017402          103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-AEGAVSRVVA  181 (372)
Q Consensus       103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~lv~  181 (372)
                      ..+|+.+++.|..+ ..-+..      ..++..|+..+.  ...=+++..++-.|..+      +..+. -.++++.++.
T Consensus       242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~  306 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLD--SGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVS  306 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGG--CSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcC--CCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHh
Confidence            35788888888887 533321      344555554445  45667889999999888      22121 2667888888


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL-IREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      -|++.+.+++..|+.+|.-++ .   ..   ....++..+-+.|.+.++ ..........|+.|+..+.+  .......|
T Consensus       307 GL~D~DDDVRAVAAetLiPIA-~---p~---~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LV  377 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP-I---TD---SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERL  377 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC-C---SS---THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGG
T ss_pred             hcCCcccHHHHHHHHHhhhhc-c---hh---hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHH
Confidence            888899999999999999998 1   11   112455555566655433 24555566677777765531  11122677


Q ss_pred             HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHH-HHHHhcCChhHHHhHHHHH
Q 017402          261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVF-VKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L  320 (372)
                      |.|...+.+.    +..++.+|..+..           ...+..+ ..+|-..++.+++.+..+.
T Consensus       378 PRL~PFLRHtITSVR~AVL~TL~tfL~-----------~~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          378 KDIFPCFTSPVPEVRTSILNMVKNLSE-----------ESIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGTGGGGTCSSHHHHHHHHHHTTTCCC-----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHhhhcCCcHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            7788888665    5667777766661           1223322 2333455666666666554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.36  E-value=1.1  Score=37.53  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=97.0

Q ss_pred             cCChHHHHHHHhc----C-------ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402          173 EGAVSRVVAALRF----G-------SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL  241 (372)
Q Consensus       173 ~g~i~~lv~~L~~----~-------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL  241 (372)
                      .+|+..|+..|..    +       +......+...|..+..+......+....+++..|+..+.+... .++..++..|
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~r~~~leLL  120 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH-HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence            4677777777743    1       24455667788888776555666665557899999999977766 8999999999


Q ss_pred             HhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHH
Q 017402          242 YALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTL  320 (372)
Q Consensus       242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L  320 (372)
                      ..+|..++.      .|..+.+++.++.           ...       ..+ ..-+..+++.+.. .+...+..++..+
T Consensus       121 ~~lc~~~~~------~G~~~~VL~Al~~-----------~~~-------~~e-~~RF~~lv~~l~~~~~~e~~~~~m~lI  175 (233)
T 2f31_A          121 SALCILPQP------EDMNERVLEAMTE-----------RAE-------MDE-VERFQPLLDGLKSGTSIALKVGCLQLI  175 (233)
T ss_dssp             HHHHTCSSS------SCHHHHHHHHHHH-----------HHH-------HHT-SCTTHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCCC------CChHHHHHHHHHH-----------HHH-------hCC-cchHHHHHHHHhcCChHHHHHHHHHHH
Confidence            999986641      1113333333332           111       111 2345566666654 3334444444444


Q ss_pred             HHHhcCCH------HHHHHHHhcChhHHHHHHhhcccHHHHHHHH
Q 017402          321 SCLCCCSQ------EICGDSRKEGVLDICMGLLEDDNEKVRRNAN  359 (372)
Q Consensus       321 ~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~  359 (372)
                      =.+....+      ..|.++...|..+.+-.+-..+++.+..+-.
T Consensus       176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          176 NALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            44443322      4566777888777776665556777665543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.29  E-value=1.9  Score=39.06  Aligned_cols=163  Identities=14%  Similarity=0.067  Sum_probs=99.6

Q ss_pred             cccccccCChHHHHHHHhc-----------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402          167 KVGLVAEGAVSRVVAALRF-----------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK  235 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~-----------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~  235 (372)
                      -..+. .+|+..|+.+|..           .+......+...|..+.-+..+...+......|..|+..+.+... .++.
T Consensus       103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~~~  180 (383)
T 3eg5_B          103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMI  180 (383)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH-HHHH
T ss_pred             HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch-HHHH
Confidence            34555 7788999998852           134566677788888876555666665557899999999988776 8999


Q ss_pred             HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHH
Q 017402          236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQ  314 (372)
Q Consensus       236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~  314 (372)
                      .|+..|..+|..++.      .|+.+.+++.++           ++..       ..+ ..-+..++..+.. .+...+.
T Consensus       181 ~aleLL~~lc~~~~~------~gG~~~VL~Al~-----------~~~~-------~~e-~~RF~~lv~~L~~~~~~e~~~  235 (383)
T 3eg5_B          181 DAAKLLSALCILPQP------EDMNERVLEAMT-----------ERAE-------MDE-VERFQPLLDGLKSGTSIALKV  235 (383)
T ss_dssp             HHHHHHHHHHTCCSS------TTHHHHHHHHHH-----------HHHH-------HHT-SCTTHHHHHTTSTTSCHHHHH
T ss_pred             HHHHHHHHHHhCcCc------CCcHHHHHHHHH-----------HHHH-------hCC-CCcHHHHHHHHHccCcHHHHH
Confidence            999999999986641      122333333332           2211       011 3345666666655 3445555


Q ss_pred             hHHHHHHHHhcCCH------HHHHHHHhcChhHHHHHHhhcccHHHHH
Q 017402          315 CSLFTLSCLCCCSQ------EICGDSRKEGVLDICMGLLEDDNEKVRR  356 (372)
Q Consensus       315 ~a~~~L~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~~~~~v~~  356 (372)
                      .++..+=.+....+      ..|.++.+.|..+.+-.+-..+++.+..
T Consensus       236 ~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          236 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            55544444444322      4456677788777666644434554443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.86  E-value=3.1  Score=42.70  Aligned_cols=173  Identities=8%  Similarity=0.118  Sum_probs=98.5

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---------ccccccc
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---------NKVGLVA  172 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~i~~  172 (372)
                      .+-+|..|++.|..++..-.  .+.+  ...++.++..|.  +.+..++..|+.+|.+++...+         .+..+..
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p  544 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN  544 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred             CceehHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence            67899999999999987421  1222  235777888887  6778899999999999876422         1233322


Q ss_pred             --cCChHHHHHHHhcCC---hH--HHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc----CCchHHHHHHHHH
Q 017402          173 --EGAVSRVVAALRFGS---PD--CRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN----GKLIREKKEAATA  240 (372)
Q Consensus       173 --~g~i~~lv~~L~~~~---~~--~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~~a~~a  240 (372)
                        ...++.|..++....   ..  ....+..+|..+.... +.-....  ...++.|+..+..    ++++.....++.+
T Consensus       545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~  622 (960)
T 1wa5_C          545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFES  622 (960)
T ss_dssp             THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence              345556666666541   11  2234555555543322 1111111  2456666655543    3344566667888


Q ss_pred             HHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHh
Q 017402          241 LYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILV  282 (372)
Q Consensus       241 L~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~  282 (372)
                      |..+... ......-++...+|.+...|...    .+.+..++..+.
T Consensus       623 l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          623 IGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            8877654 22222223444677777777443    455555555443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.47  E-value=0.91  Score=38.83  Aligned_cols=175  Identities=15%  Similarity=0.135  Sum_probs=109.9

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH--hhcCCChhHHHHHHHHHhcCCCC---c
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL--KIHSDGFTLQEKALSLLLNLSLD---D  164 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~~~~~~a~~~L~~l~~~---~  164 (372)
                      +++...|-+.  +...+.+|+..|......++  ...+.   .+..+++-+  +-.+.+..+...++.+|..+...   .
T Consensus        49 ~~~~~~lfs~--d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~  121 (266)
T 2of3_A           49 VSLMSQLFHK--DFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT  121 (266)
T ss_dssp             HHHHHHHTCS--CHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            4566666554  77888899999988766443  22222   222333311  11256888888888888776322   2


Q ss_pred             cccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          165 DNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       165 ~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                      +.+..-.+ .-.+|.|+.-+.++...+|..+-.++..+...       .....+++.+++-+++.+. .++..++..+..
T Consensus       122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~-R~R~e~l~~l~~  193 (266)
T 2of3_A          122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNA-RQRSECLLVIEY  193 (266)
T ss_dssp             TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCH-HHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHH
Confidence            22221112 34789999999888888999888888776522       2213578888888888876 999999888887


Q ss_pred             hcCCCchhHHHHhcCch---HHHHHHHhhh----HHHHHHHHHHHhC
Q 017402          244 LTSFPENRKRVVSCGAV---PILMRLADAG----LERAVEVLSILVK  283 (372)
Q Consensus       244 L~~~~~~~~~i~~~g~v---~~L~~ll~~~----~e~a~~~L~~L~~  283 (372)
                      +-..... .   ...++   +.+.+++.+.    ++.|+.++..+-.
T Consensus       194 li~~~G~-~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          194 YITNAGI-S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHCS-G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCC-C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            6432111 1   23467   8888888433    5666666654443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.28  E-value=0.014  Score=49.61  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402          299 GVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI  362 (372)
Q Consensus       299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L  362 (372)
                      +.|..++.+.+..++..++..+                 | .+.|..+ ++.+..||..|...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHHh
Confidence            3444445555555555555442                 1 4556666 888899998887543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.99  E-value=1.8  Score=37.16  Aligned_cols=181  Identities=13%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhccccc---chhh-hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC---ch-
Q 017402          179 VVAALRFGSPDCRAIAATIITSLAVVEV---NKAT-IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP---EN-  250 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~---~~~~-i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~---~~-  250 (372)
                      +-.-|.+.+=..|..|...|..+.....   .... +.......+.+-+.+.+.+. .+...++.+|..++..-   .. 
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence            4466677777788888877766543211   1111 11112344555567766666 88999999998876521   11 


Q ss_pred             hHH--HHhcCchHHHHHH-Hhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402          251 RKR--VVSCGAVPILMRL-ADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL  323 (372)
Q Consensus       251 ~~~--i~~~g~v~~L~~l-l~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  323 (372)
                      +..  ..-...++.|+.- +.+.    ++.+..++..++......      ...++.+...+.+.++.++..++..|..+
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~  166 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL  166 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            111  1223456666654 4332    455666665554321111      11344555566778999999888888876


Q ss_pred             hcC-CHHH--HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          324 CCC-SQEI--CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       324 ~~~-~~~~--~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ... +...  ....+. .+++.+..++.+.++.||..|..++-.+-.
T Consensus       167 l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          167 MAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            432 1211  111122 367778888999999999999999865543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.05  E-value=3.8  Score=37.17  Aligned_cols=144  Identities=16%  Similarity=0.084  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH
Q 017402          188 PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll  267 (372)
                      ......+...|..+.-+..+...+....+++..|+..+.+... .++..++..|..+|..++.      .|..+.+++.+
T Consensus        72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~-~~r~~vleLL~alc~~~~~------~G~~~~VL~Al  144 (386)
T 2bnx_A           72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDAAKLLSALCILPQP------EDMNERVLEAM  144 (386)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHHHHHHHHHHTCCSS------TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHcCCCC------CChHHHHHHHH
Confidence            4455667777777765555555555546889999999877666 8999999999999986541      02123333333


Q ss_pred             hhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH------HHHHHHHhcChh
Q 017402          268 DAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ------EICGDSRKEGVL  340 (372)
Q Consensus       268 ~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~~  340 (372)
                      +           +..       ...+ ..-+..|++.+.. .+...+..++..+=.+....+      ..|.++...|..
T Consensus       145 ~-----------~~~-------~~~e-~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~  205 (386)
T 2bnx_A          145 T-----------ERA-------EMDE-VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  205 (386)
T ss_dssp             H-----------HHH-------HHHT-SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred             H-----------HHH-------HhCc-hhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            2           221       1111 3345667777653 344445555544444444322      456677888877


Q ss_pred             HHHHHHhhcccHHHHHH
Q 017402          341 DICMGLLEDDNEKVRRN  357 (372)
Q Consensus       341 ~~l~~ll~~~~~~v~~~  357 (372)
                      +.+-.+-..+++.+..+
T Consensus       206 ~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          206 QVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHhccCChhHHHH
Confidence            77665555456655544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.66  E-value=4  Score=37.04  Aligned_cols=175  Identities=17%  Similarity=0.136  Sum_probs=103.7

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhh-cChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHh
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSK-RDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLL  158 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~  158 (372)
                      +...|..|.++. ..+.-.+.+..|+-.-. ....--+.|. .+|+..|+.+|...         ..+...+..++++|.
T Consensus         6 P~~yv~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLk   83 (386)
T 2bnx_A            6 AMMYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK   83 (386)
T ss_dssp             HHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-chHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            345778887763 23222234444443323 2344566664 68899999888641         013456888889998


Q ss_pred             cCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--c-hhhhcc---------ccchHHHHHHHh
Q 017402          159 NLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--N-KATIGD---------YPYAINALVSLL  225 (372)
Q Consensus       159 ~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~~---------~~g~i~~Lv~ll  225 (372)
                      .+.....+...+.. .+++..++..|.+.++.++..++.+|..++..++  + ...+..         ...-+..|++.+
T Consensus        84 almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l  163 (386)
T 2bnx_A           84 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  163 (386)
T ss_dssp             HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHT
T ss_pred             HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            88777666555554 6789999999988889999999988888876553  2 222211         022445577777


Q ss_pred             hcCCchHHHHHHHHHHHh-hcCCCc-------hhHHHHhcCchHHHHHHH
Q 017402          226 QNGKLIREKKEAATALYA-LTSFPE-------NRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       226 ~~~~~~~~~~~a~~aL~~-L~~~~~-------~~~~i~~~g~v~~L~~ll  267 (372)
                      .+....+.+ .++..+.| +...++       .|..+...|..+.+ .-+
T Consensus       164 ~~~~~~e~~-~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~L  211 (386)
T 2bnx_A          164 KSGTSIALK-VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QEL  211 (386)
T ss_dssp             STTSCHHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHH
T ss_pred             HcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHH
Confidence            655442443 44444444 444333       33444455555444 444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=90.36  E-value=3.9  Score=37.90  Aligned_cols=75  Identities=24%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402          184 RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL  263 (372)
Q Consensus       184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L  263 (372)
                      ..++...+..|+..|...-..-..   ..  ..+|..++.+..+.+. .++..|.+.|..+|.+ +...++     ++.|
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~---l~--~~Ai~a~lDLcEDed~-~IR~qaik~Lp~~ck~-~~i~ki-----aDvL  105 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPE---LA--DSAINAQLDLCEDEDV-SIRRQAIKELPQFATG-ENLPRV-----ADIL  105 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGG---GH--HHHHHHHHHHHTCSSH-HHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChh---hH--HHHHHHHHHHHhcccH-HHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence            356899999999999887544322   22  2689999999999888 9999999999999988 554443     4678


Q ss_pred             HHHHhhh
Q 017402          264 MRLADAG  270 (372)
Q Consensus       264 ~~ll~~~  270 (372)
                      +++|.+.
T Consensus       106 ~QlLqtd  112 (507)
T 3u0r_A          106 TQLLQTD  112 (507)
T ss_dssp             HHHTTCC
T ss_pred             HHHHhcc
Confidence            8888544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.55  E-value=4.7  Score=41.70  Aligned_cols=135  Identities=5%  Similarity=-0.051  Sum_probs=80.3

Q ss_pred             CChhHHHHHHHHHhcCCCCccc-cccccccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccccchhhhccccchH
Q 017402          145 DGFTLQEKALSLLLNLSLDDDN-KVGLVAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAI  218 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i  218 (372)
                      .+=..++.++.+++.++..... .+.-.=..+++.|+.++.+     ....++..++++|+..+.--.......  ..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            3456789999999999876332 1211124567778887764     123345567788887764322222221  2466


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh------cCchHHHHHHHhh-------h-HHHHHHHHHHHhCC
Q 017402          219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS------CGAVPILMRLADA-------G-LERAVEVLSILVKC  284 (372)
Q Consensus       219 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~------~g~v~~L~~ll~~-------~-~e~a~~~L~~L~~~  284 (372)
                      ..|++.+.+.++ .+...|++++.+||.  +.+..++.      ...++.++..+..       . ...+..+++.+...
T Consensus       543 ~~L~~~l~~~~~-~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHE-GVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCH-HHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCH-HHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            666666655555 799999999999995  34455542      1234555544421       1 44566667766663

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=89.16  E-value=0.27  Score=32.83  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             CCCccccCCcccCCCceecC----CchHhhHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILS----SGHTFDRASIQRWLDS   41 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~----cgh~~c~~ci~~~~~~   41 (372)
                      ...+.|.+|.+.+.|.-...    -+|.||..|-...++.
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence            45689999999999885443    3699999998887753

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.06  E-value=11  Score=34.97  Aligned_cols=97  Identities=12%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccccc
Q 017402           94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE  173 (372)
Q Consensus        94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~  173 (372)
                      ..|....++...+.=|.+.|.++...-|+..+.     .+..++++..  +.+..+|..|++.|-.++.+ ++-     .
T Consensus        33 ~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck~-~~i-----~   99 (507)
T 3u0r_A           33 VILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE--DEDVSIRRQAIKELPQFATG-ENL-----P   99 (507)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT--CSSHHHHHHHHHHGGGGCCT-TCH-----H
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh--cccHHHHHHHHHhhHHHhhh-hhh-----h
Confidence            344443447788888999998888877765443     5778999999  88999999999999999987 332     3


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAV  203 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~  203 (372)
                      .+.+.|+++|..++.......-.+|..+-.
T Consensus       100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk  129 (507)
T 3u0r_A          100 RVADILTQLLQTDDSAEFNLVNNALLSIFK  129 (507)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence            346778888888776666655566655543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=89.04  E-value=7.9  Score=32.99  Aligned_cols=168  Identities=12%  Similarity=0.084  Sum_probs=95.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh----hcCCchHHHHHHHHHHHhhcC---CCchh
Q 017402          179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL----QNGKLIREKKEAATALYALTS---FPENR  251 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~~a~~aL~~L~~---~~~~~  251 (372)
                      +...|-+.|..-+..|+..|......  +...+.   ..++.+++.+    .+.+. .+...++.+|..+..   ..+.+
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~---~~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL---SNSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH---HTHHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH---HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhcccc
Confidence            44444455666666666666654321  222221   1233344433    24444 677777777766532   11111


Q ss_pred             HHHHhc-CchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          252 KRVVSC-GAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       252 ~~i~~~-g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      ..-.++ -.+|.|+.-+.++    ++.+-.++..++.       +..-...++.++.-+++.+.+.++.++..+..+-..
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            111111 2457777766333    4555555555543       112123556667777788899999888888876432


Q ss_pred             -CHHHHHHHHhcChh---HHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          327 -SQEICGDSRKEGVL---DICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       327 -~~~~~~~~~~~g~~---~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                       +..      ...++   +.+..++.+.+..||.+|..++-.+
T Consensus       198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             112      23467   9999999999999999999888643

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=88.96  E-value=7.9  Score=40.86  Aligned_cols=129  Identities=15%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             hccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccc
Q 017402           97 TSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGL  170 (372)
Q Consensus        97 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i  170 (372)
                      -+++++.+.|.+|-..|..+-.. +         +++..+...|.+.+.+..++..|+.+|.+....      ++.+..|
T Consensus        21 ~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I   90 (1204)
T 3a6p_A           21 MDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL   90 (1204)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred             hCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            34444667788888888776442 2         245555554432256788999999999885421      2222222


Q ss_pred             cccCChHHHHHHHhc-------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402          171 VAEGAVSRVVAALRF-------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA  243 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~-------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~  243 (372)
                       +    ..++..+..       ....++...+.++..++..+-..    .-.+.++.|+.++.++ . .....++.+|..
T Consensus        91 -r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~~-~-~~~e~~L~iL~~  159 (1204)
T 3a6p_A           91 -K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQG-E-TQTELVMFILLR  159 (1204)
T ss_dssp             -H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHTC-H-HHHHHHHHHHHH
T ss_pred             -H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcCC-H-HHHHHHHHHHHH
Confidence             2    334444432       35778888899999988765221    1247899999998763 3 457778888877


Q ss_pred             hcC
Q 017402          244 LTS  246 (372)
Q Consensus       244 L~~  246 (372)
                      |+.
T Consensus       160 L~E  162 (1204)
T 3a6p_A          160 LAE  162 (1204)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=88.64  E-value=5.1  Score=41.23  Aligned_cols=206  Identities=14%  Similarity=0.071  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHhcCCCC-ccccccc-c----ccCChHHHHHHHh-----cCChHHHHHHHHHHHHhcccccchhhhccccc
Q 017402          148 TLQEKALSLLLNLSLD-DDNKVGL-V----AEGAVSRVVAALR-----FGSPDCRAIAATIITSLAVVEVNKATIGDYPY  216 (372)
Q Consensus       148 ~~~~~a~~~L~~l~~~-~~~~~~i-~----~~g~i~~lv~~L~-----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g  216 (372)
                      ..+|.++.+|..++.. ..+...+ .    -...++.+..+++     ..++.++..+++++...+..-..     . ..
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~-~~  531 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----E-SA  531 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----C-CT
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----C-ch
Confidence            3579999999998876 2211111 0    1124555566655     45788999999999988754322     1 34


Q ss_pred             hHHHHHHHhhc------CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh--------------------
Q 017402          217 AINALVSLLQN------GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG--------------------  270 (372)
Q Consensus       217 ~i~~Lv~ll~~------~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~--------------------  270 (372)
                      .++.++..+-+      ++. .++..|+.++.+++..-  +..+.  +.++.++..+..-                    
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~-~V~~~a~~af~~f~~~~--~~~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~  606 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNE-RVRPRAWYLFYRFVKSI--KKQVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS  606 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCT-TTHHHHHHHHHHHHHHT--TTTCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred             hHHHHHHHHhccccccCCCh-hHHHHHHHHHHHHHHHh--hHHhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence            55555555444      344 79999999999998632  22221  3444455444110                    


Q ss_pred             ---------HHHHHHHHHHHh---C-CHhHHHHHHhccchHHHHHHHHh----cC----ChhHH-HhHHHHHHHHhcCCH
Q 017402          271 ---------LERAVEVLSILV---K-CKEGREEMMRVSGCVGVFVKMLK----TG----SSRAV-QCSLFTLSCLCCCSQ  328 (372)
Q Consensus       271 ---------~e~a~~~L~~L~---~-~~~~~~~i~~~~g~i~~L~~ll~----~~----~~~~~-~~a~~~L~~l~~~~~  328 (372)
                               +-....+++.|.   . ..+.+...+.  ..++++..-+.    ..    .+..+ .+.+.++..+++..+
T Consensus       607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~  684 (980)
T 3ibv_A          607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFP  684 (980)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSC
T ss_pred             hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCC
Confidence                     011334444443   2 2334444444  24555444332    21    11111 245666677776532


Q ss_pred             HH------HHHHHhcChhHHHHHHhh--cccHHHHHHHHHHHHHHhc
Q 017402          329 EI------CGDSRKEGVLDICMGLLE--DDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       329 ~~------~~~~~~~g~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~  367 (372)
                      +.      ...+.. .+.+.++..+.  ..+..+|++++.+++.+-.
T Consensus       685 ~~~~~~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~  730 (980)
T 3ibv_A          685 ARGSEEVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIIN  730 (980)
T ss_dssp             SCC-CCCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            21      111111 24566666666  4688999999999987654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=88.56  E-value=12  Score=38.30  Aligned_cols=132  Identities=14%  Similarity=0.058  Sum_probs=77.5

Q ss_pred             CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh---hcC-CchHHHHHHHHHHHhhcCCC-chhHHHHhcCch
Q 017402          186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL---QNG-KLIREKKEAATALYALTSFP-ENRKRVVSCGAV  260 (372)
Q Consensus       186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~~~-~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v  260 (372)
                      .+-..++.++.++..++..-....     ...++.++.++   ... ..+.++..++++|..++..- ++...+ . .++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-P-PAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-H-HHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHH
Confidence            355678888899998875432211     12344444333   211 23489999999999887531 111111 1 234


Q ss_pred             HHHHHHHhhh-HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcC
Q 017402          261 PILMRLADAG-LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       261 ~~L~~ll~~~-~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~  326 (372)
                      +.|+..++.. ...|+.++.+++.  +.+..+.. -+..+..|..++.+  .+...+..+..++..++..
T Consensus       549 ~~l~~~l~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          549 NLLVRGLNSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            4555555422 7889999999995  33444433 13466677777776  3567788888888888754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.83  E-value=13  Score=37.92  Aligned_cols=170  Identities=12%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc-C-CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402          186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN-G-KLIREKKEAATALYALTSFPENRKRVVSCGAVPIL  263 (372)
Q Consensus       186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L  263 (372)
                      .+-..++.++.++..++..-...    . ...++.++..+.. . +.+.++..++++|...+..-........ .+++.+
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~----~-~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN----Y-SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS----C-CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCch----h-hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence            45667888999999988543221    1 2345555554422 1 2347899999999988753211112222 477777


Q ss_pred             HHHHhhh--HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcCCH-HHHHHHHhc
Q 017402          264 MRLADAG--LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCCSQ-EICGDSRKE  337 (372)
Q Consensus       264 ~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~  337 (372)
                      +..|.+.  +..|+.++.+++.  ..+..+.. -+..+..|..++..  .+...+.....++..++...+ +......+.
T Consensus       535 ~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~  612 (963)
T 2x19_B          535 LHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHS  612 (963)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            7777544  6789999999985  22332322 12345556666664  356778888888888876433 444333332


Q ss_pred             ChhHHHHHHhh----c-ccHHHHHHHHHHHHH
Q 017402          338 GVLDICMGLLE----D-DNEKVRRNANNLIQT  364 (372)
Q Consensus       338 g~~~~l~~ll~----~-~~~~v~~~a~~~L~~  364 (372)
                       +++.+...++    + .+++.+.....++..
T Consensus       613 -l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  643 (963)
T 2x19_B          613 -LISPYIQQLEKLAEEIPNPSNKLAIVHILGL  643 (963)
T ss_dssp             -HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             4444444332    2 255555544444433

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=87.04  E-value=22  Score=36.79  Aligned_cols=141  Identities=6%  Similarity=-0.033  Sum_probs=79.9

Q ss_pred             CChHHHHHHHHHHHHHhhcChHH--HHHHhhcCCHHHHHHHHhhcCC-Chh--HHHHHHHHHhcCCCC-ccccccccccC
Q 017402          101 SPLESKLESLTQLTKLSKRDSAS--RRKLTESGAVSAVLNCLKIHSD-GFT--LQEKALSLLLNLSLD-DDNKVGLVAEG  174 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~lL~~~~~-~~~--~~~~a~~~L~~l~~~-~~~~~~i~~~g  174 (372)
                      .+...+..++.+++.++..-.+.  ...+.  .+++.|+.++....+ ++.  ++..++.+|+..+.- ..+.. + =..
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRT  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHH
Confidence            46788999999999988653222  22222  356777777752111 222  445677888876532 11111 1 022


Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc-----cccchHHHHH----HHhhcCCchHHHHHHHHHHHhhc
Q 017402          175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG-----DYPYAINALV----SLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~-----~~~g~i~~Lv----~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      .+..|+..+..+++.++..|++++.+++..-  +..+.     +....++.++    ..+..-.. .....+..++..+.
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c--~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~-~~~~~lyeai~~vi  617 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQP-QQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH--HHHhhccCCCCCchhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence            3444444444567889999999999998642  22221     1112344444    43333333 66778888888877


Q ss_pred             CCC
Q 017402          246 SFP  248 (372)
Q Consensus       246 ~~~  248 (372)
                      ..-
T Consensus       618 ~~~  620 (1023)
T 4hat_C          618 SEE  620 (1023)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.66  E-value=0.12  Score=28.64  Aligned_cols=17  Identities=18%  Similarity=0.563  Sum_probs=12.7

Q ss_pred             CCCccccCCcccCCCce
Q 017402            6 PDDFKCPISLEIMSDPV   22 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv   22 (372)
                      .+.|.||+|+..+..|-
T Consensus         3 ~EGFiCP~C~~~l~s~~   19 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSAD   19 (34)
T ss_dssp             SEEEECTTTCCEESSHH
T ss_pred             CcccCCcHHHHHcCCHH
Confidence            34588999988887763

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=85.30  E-value=35  Score=35.04  Aligned_cols=206  Identities=9%  Similarity=0.030  Sum_probs=121.0

Q ss_pred             ccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCC-ChhHHHHHHHHHhcCCC--Ccc----ccccc
Q 017402           98 SKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSD-GFTLQEKALSLLLNLSL--DDD----NKVGL  170 (372)
Q Consensus        98 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~~~a~~~L~~l~~--~~~----~~~~i  170 (372)
                      +++++++.|.+|-..|..+-. ++         +++.....+|..... +..++.-|+.+|.+...  .++    .+.  
T Consensus        17 ~p~sd~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~--   84 (980)
T 3ibv_A           17 DPSVGPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ--   84 (980)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH--
T ss_pred             CCCCCHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH--
Confidence            455578889999988888765 33         256677777863222 68899999998876432  122    222  


Q ss_pred             cccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          171 VAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       171 ~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                         +.=..++.++..     +..-++...+.++..+....-..    .-.+.++.|+.++..++........+++|..++
T Consensus        85 ---~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~  157 (980)
T 3ibv_A           85 ---MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIG  157 (980)
T ss_dssp             ---HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence               222334444442     35668888888888887654211    224788999998876433134455566666332


Q ss_pred             ----CCC--c-----h-----hHHHHhcC---chHHHHHHHhh----h----HHHHHHHHHHHhCCHhHHHHHHhccchH
Q 017402          246 ----SFP--E-----N-----RKRVVSCG---AVPILMRLADA----G----LERAVEVLSILVKCKEGREEMMRVSGCV  298 (372)
Q Consensus       246 ----~~~--~-----~-----~~~i~~~g---~v~~L~~ll~~----~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i  298 (372)
                          ...  .     .     +..+.+..   +++..+.+|..    .    ...++.++......- .-..+.+ ...+
T Consensus       158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~-~~ll  235 (980)
T 3ibv_A          158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVN-EPCM  235 (980)
T ss_dssp             HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHC-HHHH
T ss_pred             HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhc-chHH
Confidence                111  0     1     12222211   13334444422    1    345666666666532 2334444 5677


Q ss_pred             HHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402          299 GVFVKMLKTGSSRAVQCSLFTLSCLCCC  326 (372)
Q Consensus       299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~  326 (372)
                      +.+.+++..  +..+..|+.+|..+...
T Consensus       236 ~~l~~~L~~--~~~r~~A~ecL~ei~~k  261 (980)
T 3ibv_A          236 NLLYSFLQI--EELRCAACETMTEIVNK  261 (980)
T ss_dssp             HHHHHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCC--hHHHHHHHHHHHHHHHc
Confidence            877777754  78899999999998765

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=85.19  E-value=2.8  Score=32.88  Aligned_cols=69  Identities=10%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l  365 (372)
                      ++..|.+-|.+.++.++..|+.+|-.+..+ +.....++.+...+..|+.++.. .++.||+++..++..-
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W  123 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW  123 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            566777888888999999999999888776 35667677777788888888875 5789999999988643

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=84.50  E-value=5.7  Score=33.09  Aligned_cols=141  Identities=12%  Similarity=0.061  Sum_probs=87.9

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC--Ccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL--DDDNKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~  169 (372)
                      +...|-.+. ..++|.-|+..|..+ ...         ...++.+...+.. +.+=.+++.++.++..++.  +++    
T Consensus        75 la~~L~~~~-~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~-D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           75 LAFLAYQSD-VYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSK-DNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHTCS-SHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGG-CSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHhCc-chHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHHHhcCHH----
Confidence            444454442 457888888877665 211         2234555542332 4556799999999988764  232    


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                          ..++.+.....+++..+|..|+..+.--+...  . .... .. +++.|-.+..+++. -+++...+.|..++..+
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~-~k~d-p~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--Y-FKEN-PNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--T-TTTC-HHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--h-hhcC-HHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhC
Confidence                15678889999999999999887775433221  1 1122 23 44444444444444 89999999999999854


Q ss_pred             -chhHHHHhc
Q 017402          249 -ENRKRVVSC  257 (372)
Q Consensus       249 -~~~~~i~~~  257 (372)
                       +-...+++.
T Consensus       210 Pd~V~~~~~~  219 (240)
T 3l9t_A          210 PDLVKIELKN  219 (240)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence             555555543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.78  E-value=3.3  Score=31.87  Aligned_cols=70  Identities=10%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|.+-+++.++.++..|+.+|-.+..+ +.....++.+...+..|+.++..      .+..||+++..++..-.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            577788888889999999999999988876 45677788777888889988863      47899999998886543

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=83.62  E-value=5  Score=30.47  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhc-ChhHHHHHHhhc--------ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKE-GVLDICMGLLED--------DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~-g~~~~l~~ll~~--------~~~~v~~~a~~~L~~l~  366 (372)
                      .++.|.+-|...++.++-.|+.+|..||.+ ++..+..+.+. ..|+.+.+.--.        ....||..|..++..|.
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~  129 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF  129 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            567788888888899999999999999965 45777777665 345555544322        13789999999999988


Q ss_pred             cCCC
Q 017402          367 GNPS  370 (372)
Q Consensus       367 ~~~~  370 (372)
                      +...
T Consensus       130 d~~~  133 (140)
T 1vdy_A          130 SEEN  133 (140)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            7653

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=82.78  E-value=3.2  Score=31.63  Aligned_cols=69  Identities=10%  Similarity=0.122  Sum_probs=53.7

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ++..|.+-|.+.++.++..|+.+|-.+..+. .....++.+...+..|+.++...++.|+++...++...
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W  112 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW  112 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            5667777888889999999998888877664 45566666666777778888778899999999998654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=82.59  E-value=25  Score=36.39  Aligned_cols=199  Identities=16%  Similarity=0.159  Sum_probs=112.4

Q ss_pred             CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccc------cchhhhccccch
Q 017402          145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVE------VNKATIGDYPYA  217 (372)
Q Consensus       145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~------~~~~~i~~~~g~  217 (372)
                      .+.+.+..|-..|..+..++         ++...+..+|.+ .+..+|..|+.+|.+.....      +.+..|      
T Consensus        28 p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i------   92 (1049)
T 3m1i_C           28 GSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI------   92 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH------
T ss_pred             CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH------
Confidence            44557777877887664433         344456666644 57889999999999876432      222222      


Q ss_pred             HHHHHHHhhcCC--------chHHHHHHHHHHHhhcCC--CchhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCC
Q 017402          218 INALVSLLQNGK--------LIREKKEAATALYALTSF--PENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKC  284 (372)
Q Consensus       218 i~~Lv~ll~~~~--------~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~  284 (372)
                      =..|+..+....        ++.++...+.++..++..  ++.-.     +.++.|+..+..+   .+.++.+|..|+..
T Consensus        93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee  167 (1049)
T 3m1i_C           93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSSSVNVCENNMIVLKLLSEE  167 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence            233444443321        125677777777777653  32221     4667777777533   56677777777742


Q ss_pred             Hh---------HH-----HHHHhc-cchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402          285 KE---------GR-----EEMMRV-SGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE  348 (372)
Q Consensus       285 ~~---------~~-----~~i~~~-~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~  348 (372)
                      -.         .|     ..+..+ ...+..+...+.. .++.++..++.++.+....-+-  ..+.+...++.+.+.+.
T Consensus       168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l  245 (1049)
T 3m1i_C          168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM  245 (1049)
T ss_dssp             HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH
T ss_pred             HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC
Confidence            11         11     122221 1233444555543 4567788888888776543221  22444566666663222


Q ss_pred             cccHHHHHHHHHHHHHHh
Q 017402          349 DDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       349 ~~~~~v~~~a~~~L~~l~  366 (372)
                       .+++++..|..+|..+-
T Consensus       246 -~~~~~~~~a~~~L~~i~  262 (1049)
T 3m1i_C          246 -TSPDTRAITLKCLTEVS  262 (1049)
T ss_dssp             -HSHHHHHHHHHHHHHHH
T ss_pred             -CCHhHHHHHHHHHHHHH
Confidence             36778888888776543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=82.26  E-value=3.2  Score=32.84  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|.+-+.+.++.++..|+.+|-.+..+. .....++.+...+..|+.++..      .+.+||+++..++..-.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            5677888888899999999999999988774 4667777777888889998862      46899999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-14
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	6e-14
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-12
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	0.001
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-07
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-06
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.004

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.7 bits (196), Expect = 2e-19
 Identities = 37/69 (53%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
          +FP+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++  L     L PN+
Sbjct: 4  EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA-GLTPNY 62

Query: 64 ALRSLISNF 72
           L+SLI+ +
Sbjct: 63 VLKSLIALW 71

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (200), Expect = 1e-17
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 153 ALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212
           A+  L+N   D +     +A  A+  +   L          AA ++  L+  E ++  I 
Sbjct: 1   AVVNLINYQDDAE-----LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-- 270
             P  ++A+V  +QN   +   +  A  L+ L+   E    +   G +P L+++  +   
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 271 --LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ 328
             L  A+  L  L+  +EG +  +R++G +   V +L   + + +  +   L  L   +Q
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 329 EICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSGNPSMQ 372
           E        G     + ++     EK+    + +++ LS   S +
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-11
 Identities = 41/282 (14%), Positives = 93/282 (32%), Gaps = 4/282 (1%)

Query: 92  LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQE 151
           L  +L  +        ++   + +LSK++++    +     VSA++  ++ +++      
Sbjct: 22  LTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ-NTNDVETAR 78

Query: 152 KALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI 211
                L NLS   +  + +   G +  +V  L          A T + +L + +      
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMR-LADAG 270
                 +  +V+LL    +                  E++  +++ G    L+  +    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEI 330
            E+ +   S ++K               G    +    +  + +     L  L   S   
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 331 CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSMQ 372
                 EG+L   + LL  D+  V   A  ++  L+ N    
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 8e-09
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 2/128 (1%)

Query: 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209
           ++ A+  L+ L +              ++          +        +  LA    N+ 
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA 269
            I      I   V LL +      ++ AA  L  L    E  + + + GA   L  L  +
Sbjct: 455 VIRGLN-TIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 512

Query: 270 GLERAVEV 277
             E     
Sbjct: 513 RNEGVATY 520

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 9e-08
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 119 RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSR 178
           RD  +R  +     +   +  L    +   +Q  A  +L  L+ D +    + AEGA + 
Sbjct: 448 RDVHNRIVIRGLNTIPLFVQLLYSPIE--NIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505

Query: 179 VVAALRFGSPDCRAIAATIITSLA 202
           +   L   +      AA ++  ++
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 18/195 (9%)

Query: 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLI 231
               +  VV  L   S      A   +     +            AI  LV LL      
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-Q 411

Query: 232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEM 291
             ++  +            R   +  G    L  LA     R V                
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV---------------- 455

Query: 292 MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN 351
           +R    + +FV++L +      + +   L C     +E       EG       LL   N
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVL-CELAQDKEAAEAIEAEGATAPLTELLHSRN 514

Query: 352 EKVRRNANNLIQTLS 366
           E V   A  ++  +S
Sbjct: 515 EGVATYAAAVLFRMS 529

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 5  FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPN 62
               +CPI LE++ +PV     H F +  + + L+   G   CP+ K  +  + SL  +
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQES 76

Query: 63 HALRSLISNF 72
               L+   
Sbjct: 77 TRFSQLVEEL 86

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (156), Expect = 6e-14
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 4  QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
            PD     IS E+M +P I  SG T+DR  I+  L       P+T+ P   Q  LIPN 
Sbjct: 3  DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSP-LTQEQLIPNL 61

Query: 64 ALRSLISNF 72
          A++ +I  F
Sbjct: 62 AMKEVIDAF 70

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 1  MATQFPDDFK----CPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQ 56
          +A  FP  F     C I   I++DPV  S  H F R  I R L      CP  + P    
Sbjct: 12 LAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

Query: 57 PSLIPNHALRSLISN 71
              P  +  +++++
Sbjct: 72 DLESPVKSFLNILNS 86

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 7  DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
              C I  E   D  I   GH    + +  W +S  + CP  +  +     ++ +
Sbjct: 22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 77

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 6  PDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
           D+F  PI   +M DPV+L S   T DR++I R L S  +T P  + P      + PN  
Sbjct: 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSP-LTMDQIRPNTE 77

Query: 65 LRSLISNF 72
          L+  I  +
Sbjct: 78 LKEKIQRW 85

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVEVNK 208
           +E AL LL +L  + DN         +  +V   L  G+   R  AA +I + +      
Sbjct: 34  REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI 93

Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLA 267
                   A+  L+ LL        + +A  A+  L         + +      +LMR  
Sbjct: 94  QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM 153

Query: 268 DAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323
                    ++  +L  L+      +  +   G V   V +++T  S   +  L  L  L
Sbjct: 154 QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 213

Query: 324 CCCSQEICGDSRK-----EGVLDICMGLLE--DDNEKVRRNANNLIQTL 365
                +   + R+     E +L     LL+  ++ ++       L+QT 
Sbjct: 214 VTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 262

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC 331
           E A+E+L+ L +  +   +  ++SG   +  + L+ G++     +   +         I 
Sbjct: 35  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 332 GDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS 366
                 G L   + LL+    + VR  A   I  L 
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 52/281 (18%), Positives = 101/281 (35%), Gaps = 12/281 (4%)

Query: 99  KSSPLESKLESLTQLTK-LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLL 157
            S+ LES+L++     K LS+        +  +G +   ++ L   +D   +Q ++   L
Sbjct: 23  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-KTDCSPIQFESAWAL 81

Query: 158 LNL-SLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY 216
            N+ S   +    +V  GA+   ++ L          A   + ++A        +     
Sbjct: 82  TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG 141

Query: 217 AINALVSLLQNGKLIREKKEAA-TALYALTSFPENRKRVVSC----GAVPILMRLADAG- 270
           AI+ L++LL    L            + L++   N+            +P L+RL     
Sbjct: 142 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201

Query: 271 ---LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327
              L  +   +S L      R EM+   G V   VK+L       V  +L  +  +   +
Sbjct: 202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261

Query: 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368
            E        G L +   LL +    +++ A   +  ++  
Sbjct: 262 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 277 VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS-- 334
           + +        +   +   G +   + +L    ++ +Q  L  +S +   ++++      
Sbjct: 338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 397

Query: 335 ----RKEGVLDICMGLLEDDNEKVRRNANNLIQT 364
                + G LD    L   +NE V + + NLI+ 
Sbjct: 398 SIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 11 CPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPL---PDQPSL 59
          C         P +L   HT     ++         CPI + P     D P+L
Sbjct: 9  CQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPAL 56

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 149 LQEKALSLLLNLSL-DDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EV 206
            Q      + +    D+  K  +   G + ++V  LR  + + +  AA  + +L      
Sbjct: 18  YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77

Query: 207 NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266
           NK         I   VSLL+       +K+    L+ L+S  E ++ +++     +  R+
Sbjct: 78  NKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136

Query: 267 ADAG-------------------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT 307
                                     A   L  L     GR+ M   SG +   +  ++ 
Sbjct: 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196

Query: 308 GSSRAVQCSLFTLSCLCCCS 327
             + +        +C+C   
Sbjct: 197 CVAASRCDDKSVENCMCVLH 216

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 19/226 (8%)

Query: 81  QLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL 140
           QLE+   N  T  S     S+  +  + +        +  +                  L
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291

Query: 141 KIHSDGFTLQEKALSLLLNLSLD------DDNKVGLVAEGAVSRVVAALRFGSPDCRAIA 194
              S      E     L NL+          +++  + E  + ++   L+ G+ D     
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

Query: 195 ATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKE-----AATALYAL-TSFP 248
           A+++++++   +    +G+       +  LL +        E     A   +  L  S P
Sbjct: 352 ASLLSNMSRHPLLHRVMGNQ--VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409

Query: 249 ENRKRVVSCGAVPILMRLA-----DAGLERAVEVLSILVKCKEGRE 289
           +  K+  S   +  ++ L          E A  +LS +   KE + 
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 10/68 (14%), Positives = 24/68 (35%)

Query: 301 FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360
            V+ L +   +      + +   C   +       + G +   + LL   N+ V++ A  
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 361 LIQTLSGN 368
            ++ L   
Sbjct: 67  ALRNLVFR 74

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 22/337 (6%)

Query: 46  CPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES 105
            P+    L      +   A+ +L +    +   +  +   N     L       +S   S
Sbjct: 164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL----FNSNKPS 219

Query: 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165
            + + T       R    +   +        L  L    D  TL +   ++        +
Sbjct: 220 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 279

Query: 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL 225
               ++      R+V  L   S   +  A   + ++      +  +      + AL  LL
Sbjct: 280 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 339

Query: 226 QNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLER----AVEVLSIL 281
            + K   +K+   T         E  + V+    +P L++L +    +    A   +S  
Sbjct: 340 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 399

Query: 282 VKCKEGREEMMRV---SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC-----------CS 327
                 R +++R     GC+     +L+   +R ++ +L  L  +               
Sbjct: 400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 459

Query: 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364
            E      K G ++      +++N+K+   A  +I+T
Sbjct: 460 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 6e-07
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 4  QFPDDFKCPISLEIMSDPVILSS-GHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
          +     +C     I+ +PV L    H F    +   + +G   C     P      L  N
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPA-WIQDLKIN 73

Query: 63 HALRSLISNFTR 74
            L S+I   ++
Sbjct: 74 RQLDSMIQLCSK 85

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 10 KCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPD 55
          +CPI LE  S+  + L   H F    I RW+   + TCP+ K+P+  
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 7  DDFKCPISLEIMSDP-----VILSSGHTFDRASIQRWLDSGHRTCPITKLPL 53
          DD  CP              ++   GHT   + +      G   CP    PL
Sbjct: 2  DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 11 CPISLEIMSD----PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD 55
          CP+ +E +          + G+   R    R     +  CP  + P P+
Sbjct: 3  CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7  DDFKCPISLEIMSDP----VILSSGHTFDRASIQRWLDSGHRTCPITKLPL 53
          D  +C + L  + D      +   GH F    +  WL S H TCP+ +L +
Sbjct: 4  DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 11 CPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
          C IS ++   PV+   S   F+++ +++++       PIT  PL  +  ++ 
Sbjct: 3  CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE-EIVE 52

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 34/255 (13%), Positives = 85/255 (33%), Gaps = 23/255 (9%)

Query: 130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL-VAEGAVSRVVAALRFGSP 188
           S  +S +L   K+ S     +  A + L+     D  K+        V  ++  L   + 
Sbjct: 2   SYHISNLLE--KMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG 59

Query: 189 DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-- 246
           + + +A   +  L    V+K         ++ L + + + K    +  ++  L  +    
Sbjct: 60  EVQNLAVKCLGPL----VSKVKEYQVETIVDTLCTNMLSDKEQ-LRDISSIGLKTVIGEL 114

Query: 247 -FPENRKRVVSCGAVPILMRLADAGLER--------AVEVLSILVKCKEGREEMMRVSGC 297
               +   + +     I  RL  A  ++        A+++++ ++  + G   +      
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ-GGLLVNFHPSI 173

Query: 298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRN 357
           +   +  L +    AV+    T+  L             + +  +   L ++D+    R 
Sbjct: 174 LTCLLPQLTSPRL-AVRKR--TIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRT 230

Query: 358 ANNLIQTLSGNPSMQ 372
               I  +S     +
Sbjct: 231 YIQCIAAISRQAGHR 245

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.91
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.82
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.72
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.63
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.6
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.52
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.51
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.25
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.15
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.13
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.89
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.81
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.73
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.73
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.71
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.69
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.62
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.51
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.51
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.32
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.3
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.29
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.21
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.11
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.07
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.91
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.86
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.82
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.79
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.73
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.69
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.28
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.81
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	94.68
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.4
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.46
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.68
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.55
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.22
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.51
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.2
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.4
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	83.49
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.45
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.7
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	81.69
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.29

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.7e-25  Score=211.05  Aligned_cols=276  Identities=17%  Similarity=0.170  Sum_probs=242.8

Q ss_pred             CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402           88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN  166 (372)
Q Consensus        88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~  166 (372)
                      ..|.|+..|.+. .+.+.+..|++.|.+++..++.....+.+.|+++.++.+|.  +.+.++++.++++|.|++.+ +..
T Consensus       120 ~i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~--s~~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         120 VVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             CHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ChHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc--CCChhHHHHHHHHHHHHhhhhHHH
Confidence            347788888754 46789999999999999988888889999999999999999  78899999999999999876 677


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      +..+.+.|+++.++.++.+.+..++..++++|.+++.............++++.|+.++.+.+. +++..++++|.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHhhcc
Confidence            8888999999999999999999999999999999997765444333325899999999998877 999999999999998


Q ss_pred             CC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402          247 FP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS  321 (372)
Q Consensus       247 ~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  321 (372)
                      .. +....+++.|+++.++.++.++    ...++.++.+++.+.......+...|+++.|..++.+.++.++..++++|.
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            65 4567888999999999999655    678999999999876666555544899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +++.++++....+.+.|+++.++.++.+++.+++..|.++|.++..
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence            9999889999999999999999999999999999999999988764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.2e-26  Score=216.54  Aligned_cols=270  Identities=20%  Similarity=0.248  Sum_probs=235.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      .|.|+++|++.  +.+++..|+..+.+++.. +..+..+.. .|+++.|+++|+. ..+.++++.++.+|.+|+.+++++
T Consensus        19 ip~L~~lL~~~--~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~-~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          19 IPELTKLLNDE--DQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             HHHHHHHHTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhH
Confidence            58899999865  889999999999999985 446666655 4789999999984 367899999999999999999999


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc-hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN-KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..+++.|+++.|+.+|++++++++..|+++|.+++.+.+. +..+.. .|+|+.|+.++++++. +++..++.+|.+++.
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHccCh-HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999987765 445556 7999999999998877 999999999999997


Q ss_pred             CC-chhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402          247 FP-ENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL  320 (372)
Q Consensus       247 ~~-~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  320 (372)
                      .+ +.+..+.+.|+++.|+.++...     .+.+..++.+++.+++.+..+.+ .|+++.|+.++.++++.++..++.+|
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhh-hhhhhhHHHHhcccchhhhhhhhhHH
Confidence            55 5777888999999999999543     56789999999999999999998 79999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .+++....   ......|+++.|+.++++++.+++..|.++|.+|..+
T Consensus       252 ~~ls~~~~---~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         252 RNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHHHTTCT---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             Hhcccccc---chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence            99875532   2223357899999999999999999999999998754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=213.46  Aligned_cols=272  Identities=19%  Similarity=0.200  Sum_probs=236.6

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc-cc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~-~~  167 (372)
                      .+.++..|.+. ++++.+..|+..|.+++. +++++..+.+.|+++.|+.+|+  +++++++..|+++|.+++.+.+ .+
T Consensus        61 v~~l~~~L~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          61 VSAIVRTMQNT-NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhC--CCCHHHHHHHHHHHHHhhcccchhh
Confidence            35677788764 478899999999999997 6779999999999999999999  8999999999999999988744 56


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      ..+.+.|+++.|+.+|++++.+++..++++|.+++..+ +++..+.. .|+++.|+.+++......++..+++++.+++.
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHh-cccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            67778999999999999999999999999999999765 45555666 79999999999887665889999999999999


Q ss_pred             CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHH
Q 017402          247 FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC  322 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  322 (372)
                      +++++..+++.|+++.|+.++.++    ...++.++.+++......  ... .|+++.|++++.++++.+++.|+.+|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~-~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhh-hhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            999999999999999999999554    677889999998644322  222 5789999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHHHhcC
Q 017402          323 LCCCSQEICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       323 l~~~~~~~~~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~  368 (372)
                      ++..+++.+..+.+.|+++.++.++..  +++.+++.|..+|+++...
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence            999889999999999999999998853  5788999999999988754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.2e-24  Score=198.07  Aligned_cols=281  Identities=19%  Similarity=0.200  Sum_probs=236.6

Q ss_pred             CCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChH-HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 017402           85 ANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA-SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD  163 (372)
Q Consensus        85 ~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~  163 (372)
                      .....++++..|.++  +++.+.+|+..++++...+.. ..+.+.+.|++|.|+++|++ +.+++++..++++|.+++.+
T Consensus        11 ~~~~i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_          11 VNWSVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             SSCCHHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTC-GGGHHHHHHHHHHHHHHHTS
T ss_pred             hhhhHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcC
Confidence            344568899999887  899999999999998753331 25678899999999999973 35678999999999999876


Q ss_pred             -ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCc----hHHHHHH
Q 017402          164 -DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKL----IREKKEA  237 (372)
Q Consensus       164 -~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~~a  237 (372)
                       ++.+..+.+.|+++.++.+|.+++.++++.|+++|.+++..+ +.+..+.. .|+++.|+.++.....    ......+
T Consensus        88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (434)
T d1q1sc_          88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNL  166 (434)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred             ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHH-hhhhhHHHHHHHhcccccchHHHHHHH
Confidence             566778889999999999999999999999999999998765 45666666 6999999999987653    2455678


Q ss_pred             HHHHHhhcCCCchh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhH
Q 017402          238 ATALYALTSFPENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRA  312 (372)
Q Consensus       238 ~~aL~~L~~~~~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~  312 (372)
                      ++++.+++...... ......++++.|+.++.++    ...++.+|.+++..+..+..+....|+++.|+.++.+.++.+
T Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~  246 (434)
T d1q1sc_         167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI  246 (434)
T ss_dssp             HHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred             HHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhh
Confidence            88999999866433 3445667899999998554    677999999999887666665555899999999999999999


Q ss_pred             HHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          313 VQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       313 ~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      +..|+.+|.+++.++++.+..+.+.|+++.++.++++.++++++.|.++|.++..+.
T Consensus       247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  303 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence            999999999999988899999999999999999999999999999999999987653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=8.7e-24  Score=197.08  Aligned_cols=277  Identities=19%  Similarity=0.245  Sum_probs=236.6

Q ss_pred             CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402           87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD  165 (372)
Q Consensus        87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~  165 (372)
                      ...|.|+++|.+. .++++|..|++.|.+++..+++.+..+.+.|+++.++.+|.  +.+.++++.|+++|.|++.+ +.
T Consensus        56 g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~--~~~~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          56 GLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TCHHHHHHHTTCG-GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccc--cCCHHHHHHHHHHHHHHhccchH
Confidence            3457899999754 46789999999999999888889999999999999999999  78999999999999999876 56


Q ss_pred             ccccccccCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402          166 NKVGLVAEGAVSRVVAALRFGS-----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA  240 (372)
Q Consensus       166 ~~~~i~~~g~i~~lv~~L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a  240 (372)
                      .+..+.+.|+++.++.++...+     ......+++.+.+++........+....++++.|+.++.++++ +++..++++
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcccc-chhhhHHhh
Confidence            6777888999999999997643     3455677888999987664444433335899999999998877 999999999


Q ss_pred             HHhhcCCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHH
Q 017402          241 LYALTSFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQ  314 (372)
Q Consensus       241 L~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~  314 (372)
                      |.+++..+. ....+.+.|+++.|++++.++    ...++.+|.+++... ..+..+.+ .|+++.|+.++.+.++.+++
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~  290 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQK  290 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHh-ccccchHHHhhcccchhhhH
Confidence            999998764 556667889999999999655    678899999999855 45566666 78999999999999999999


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .|+.+|.+++..+++....+.+.|+++.++.++.+++.+++..|.++|.++..+
T Consensus       291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence            999999999998889999999999999999999999999999999999887643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.9e-24  Score=196.64  Aligned_cols=278  Identities=17%  Similarity=0.224  Sum_probs=224.5

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK  167 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~  167 (372)
                      .|.|+++|.++  +++++..|++.|.++|.+++++|..+.+.|+||.|+++|+  +++++++..|+++|.+|+.+ ++++
T Consensus         4 ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            47899999876  8999999999999999988889999999999999999999  89999999999999999865 7788


Q ss_pred             ccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhccccc----------------------------------------
Q 017402          168 VGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEV----------------------------------------  206 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~----------------------------------------  206 (372)
                      ..+.+.|+++.++.++.+ .+.+++..++++|.+++..+.                                        
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            899999999999999865 577788888888877765332                                        


Q ss_pred             ----------------chhhhccccchHHHHHHHhh--------------------------------------------
Q 017402          207 ----------------NKATIGDYPYAINALVSLLQ--------------------------------------------  226 (372)
Q Consensus       207 ----------------~~~~i~~~~g~i~~Lv~ll~--------------------------------------------  226 (372)
                                      ++..+....|+++.|+.+++                                            
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence                            11222222456666655442                                            


Q ss_pred             ------------------------------------------------------cCCchHHHHHHHHHHHhhcCCCc---
Q 017402          227 ------------------------------------------------------NGKLIREKKEAATALYALTSFPE---  249 (372)
Q Consensus       227 ------------------------------------------------------~~~~~~~~~~a~~aL~~L~~~~~---  249 (372)
                                                                            ...++.....+.+++.+++....   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                  11122455567778888876543   


Q ss_pred             ---hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC------ChhHHHhH
Q 017402          250 ---NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG------SSRAVQCS  316 (372)
Q Consensus       250 ---~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~------~~~~~~~a  316 (372)
                         .+..+.+.|+++.|++++.++    ++.++.++.+|+.+++++..+..  ++++.++.++...      ++.++..|
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a  397 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSA  397 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHH
Confidence               234555779999999999654    67899999999999999887765  5799999998642      34678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHhcCCCCC
Q 017402          317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLSGNPSMQ  372 (372)
Q Consensus       317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~  372 (372)
                      +.+|.+++..+++.++.+++.|+++.|+.++.+ +++.+++.|+.+|.+|..++..|
T Consensus       398 ~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            999999999889999999999999999999987 57899999999999998777643

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.9e-23  Score=195.58  Aligned_cols=275  Identities=16%  Similarity=0.144  Sum_probs=234.1

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhh-cChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc-cc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSK-RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-DN  166 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~  166 (372)
                      .+++++.+.++  +.+.+..|+..++++.. ......+.+.+.|+++.|+.+|+. +.+.+++..|+++|.|++.++ ..
T Consensus        78 l~~~~~~~~s~--~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~-~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          78 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHH
Confidence            36788877655  88899999999998764 233346788999999999999984 356789999999999998774 45


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT  245 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~  245 (372)
                      ...+...|+++.++.+|.+++.+++..++++|.+++... +.+..+.. .|+++.|+.++.+... .++..++++|+|++
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~-~~~~~~L~~ll~~~~~-~~~~~~~~~l~nl~  232 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKP-SLIRTATWTLSNLC  232 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHh-hcccccchhhcccCCH-HHHHHHHHHHHHHh
Confidence            566778999999999999999999999999999998765 67777777 7999999999998877 89999999999999


Q ss_pred             CCCch-hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402          246 SFPEN-RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT  319 (372)
Q Consensus       246 ~~~~~-~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~  319 (372)
                      .+... .......|+++.|+.++.++    ...++++|.+++..... ...+.. .|+++.++.++.+.+..++..|+.+
T Consensus       233 ~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         233 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHHHH
Confidence            86643 34445668999999999544    66789999999985544 455666 7999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      |.+++.++.+....+.+.|+++.+..+++++++.+++.+.++|.++..+.
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            99999988888888999999999999999999999999999999986543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.2e-20  Score=159.35  Aligned_cols=219  Identities=20%  Similarity=0.165  Sum_probs=179.4

Q ss_pred             CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHH
Q 017402          144 SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINAL  221 (372)
Q Consensus       144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~L  221 (372)
                      ..+.+.+..|+.+|.+|+.+.+++..+...|+++.++. ++++++.+++..|+++|.+++.++ ..+..+.. .|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHH
Confidence            35577899999999999999899999999999999986 677899999999999999999866 45666777 7999999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhcc
Q 017402          222 VSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVS  295 (372)
Q Consensus       222 v~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~  295 (372)
                      +.++.+..++.++..|+++|.+++.+. .++..+.+.|+++.|++++.++    ...++.+|.+++. .+..+..+.. .
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-M  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-T
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH-h
Confidence            999987665589999999999999865 5777888999999999999665    6779999999986 5677777777 7


Q ss_pred             chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcC--h---hHHHHHHhhcc--cHHHHHHHHHHHHH
Q 017402          296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEG--V---LDICMGLLEDD--NEKVRRNANNLIQT  364 (372)
Q Consensus       296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~---~~~l~~ll~~~--~~~v~~~a~~~L~~  364 (372)
                      |+++.|+.++.++++.+++.|+.+|++++..+++....+...+  .   +..+...+...  ..+..+.+..+++.
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~  261 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT  261 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888877776543  2   23333333332  33445666666654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.5e-21  Score=135.87  Aligned_cols=74  Identities=50%  Similarity=1.001  Sum_probs=68.6

Q ss_pred             CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      +++++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+.++. ..++.+|+.++++|+.|.+.+
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~-~~~l~pN~~L~~~I~~~~~~~   75 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHHHHS
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCC-cccccchHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999877778999999999 888999999999999998753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.9e-21  Score=134.28  Aligned_cols=73  Identities=37%  Similarity=0.595  Sum_probs=68.3

Q ss_pred             CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP   76 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~   76 (372)
                      .++|++|.||||+++|+|||+++|||+||+.||.+|+..++.+||.|+.++. ..++.+|..++++++.|.+.+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~-~~~l~pN~~L~~~I~~~l~~~   74 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFISEN   74 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHTTC
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCcccccc-ccccccHHHHHHHHHHHHHHC
Confidence            3689999999999999999999999999999999999887788999999998 788999999999999999774

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-18  Score=158.11  Aligned_cols=236  Identities=19%  Similarity=0.198  Sum_probs=177.0

Q ss_pred             CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccch
Q 017402          131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNK  208 (372)
Q Consensus       131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~  208 (372)
                      +.||.|+++|+  +++++++..|+.+|.||+.+ ++++..|.+.|+|+.|+++|++++++++..|+++|.+|+.. ++++
T Consensus         2 ~~ip~lv~~L~--~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45899999999  89999999999999999875 78899999999999999999999999999999999999954 4677


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh------------------h
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA------------------G  270 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~------------------~  270 (372)
                      ..+.+ .|+++.|+.++....+..++..|+++|++++..+..+..+...|..+.+..++..                  .
T Consensus        80 ~~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          80 LETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            88888 7999999999987666588999999999999877666655554333222222100                  0


Q ss_pred             -HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHH---------------------------------------------
Q 017402          271 -LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKM---------------------------------------------  304 (372)
Q Consensus       271 -~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~l---------------------------------------------  304 (372)
                       .+.++.++.+++.+++++.......|+++.++.+                                             
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence             3345556666666555555544444444444443                                             


Q ss_pred             -----------------------------------------------------Hhc-CChhHHHhHHHHHHHHhcCCH--
Q 017402          305 -----------------------------------------------------LKT-GSSRAVQCSLFTLSCLCCCSQ--  328 (372)
Q Consensus       305 -----------------------------------------------------l~~-~~~~~~~~a~~~L~~l~~~~~--  328 (372)
                                                                           +.. .++..++.+..++.+++....  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                                 322 234445566677777765432  


Q ss_pred             ---HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          329 ---EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       329 ---~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                         ..+..+.+.|+++.|+.+++++++.++..|.++|.+|..+.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence               23344567899999999999999999999999999998654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.7e-18  Score=150.55  Aligned_cols=181  Identities=19%  Similarity=0.201  Sum_probs=158.8

Q ss_pred             cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH-HhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHH
Q 017402          185 FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS-LLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPI  262 (372)
Q Consensus       185 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~  262 (372)
                      ..+.+.+..|+.+|.+++.+.+++..+.. .|+++.|+. ++++++. +++..|+.+|++++.++ ..+..+++.|+++.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~-~gg~~~ll~~ll~s~~~-~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHH-cCCHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            34678889999999999988788888888 699999986 5656555 99999999999999865 57778889999999


Q ss_pred             HHHHHhhh-----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh
Q 017402          263 LMRLADAG-----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK  336 (372)
Q Consensus       263 L~~ll~~~-----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  336 (372)
                      |+.++++.     +..++.+|.+++.+. .++..+.. .|+++.|++++.+.++.++..++.+|++++..+++.+..+.+
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999643     678999999999754 55666666 899999999999999999999999999999988999999999


Q ss_pred             cChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402          337 EGVLDICMGLLEDDNEKVRRNANNLIQTLSGN  368 (372)
Q Consensus       337 ~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  368 (372)
                      .|+++.|+.+++++++++++.|.++|..|...
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988653

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-18  Score=124.06  Aligned_cols=73  Identities=34%  Similarity=0.499  Sum_probs=65.9

Q ss_pred             CCCCCCccccCCcccCCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402            3 TQFPDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL   77 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~   77 (372)
                      ..+|++|.||||+++|.|||+++|| |+||+.||.+|+.. +.+||.|++++. ..++.+|..++..|+.|.+...
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~-~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHHHHHST
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCccccccccc-chhhcchHHHHHHHHHHHHHHH
Confidence            4578999999999999999999866 59999999999976 568999999999 8999999999999999998643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.7e-17  Score=115.54  Aligned_cols=62  Identities=29%  Similarity=0.473  Sum_probs=51.8

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-ccHHHHHHH
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI-PNHALRSLI   69 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~-~n~~l~~~i   69 (372)
                      +++.||||.++|.+|++++|||+||+.||.+|+..+..+||.||.++. ..++. |...+.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~-~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF-PTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCC-hhhccCHHHHHHHHh
Confidence            457899999999999999999999999999999876778999999988 55543 555555544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.5e-17  Score=117.52  Aligned_cols=68  Identities=24%  Similarity=0.516  Sum_probs=58.4

Q ss_pred             CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      .+.+.||||.++|.+|++++|||+||+.||.+|+...  ...||.||.++. ..++.+|..+..+++.+.+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC-hhhCCcCHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999653  358999999998 7888888877777776653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.3e-16  Score=112.62  Aligned_cols=66  Identities=23%  Similarity=0.424  Sum_probs=58.2

Q ss_pred             CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402            5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR   74 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~   74 (372)
                      +++.+.||||.++|.+||++ +|||+||+.||.+|+..   .||.||.++. ..++.+|..++.+++.+..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~-~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAW-IQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCS-CSSCCCCHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCc-hhhCcccHHHHHHHHHHHH
Confidence            34678999999999999986 79999999999999843   5999999988 7889999999999987754

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.3e-15  Score=97.59  Aligned_cols=51  Identities=24%  Similarity=0.486  Sum_probs=44.6

Q ss_pred             ccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402            9 FKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP   61 (372)
Q Consensus         9 ~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~   61 (372)
                      +.||||+++|++||.+ .|||+||+.||.+|+.. +.+||.||+++. ..++.+
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~-~~dLip   52 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS-IEEIVE   52 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC-GGGCEE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCC-HHhcee
Confidence            5799999999999987 59999999999999987 557999999998 666544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-14  Score=97.82  Aligned_cols=48  Identities=23%  Similarity=0.397  Sum_probs=43.9

Q ss_pred             CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD   55 (372)
Q Consensus         8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~   55 (372)
                      ...||||.+.+.+|++++|||+||+.|+.+|+..+..+||.||..+..
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            356999999999999999999999999999998767789999999883

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.8e-14  Score=89.51  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=39.6

Q ss_pred             CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +.+.|+||++.+.+|++++|||+||+.|+.+|    ..+||.||++++
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCccc
Confidence            45799999999999999999999999999754    557999999887

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-13  Score=90.46  Aligned_cols=52  Identities=25%  Similarity=0.493  Sum_probs=42.3

Q ss_pred             CCccccCCcccCC-Cc----eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402            7 DDFKCPISLEIMS-DP----VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL   59 (372)
Q Consensus         7 ~~~~C~ic~~~~~-~P----v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~   59 (372)
                      |+..||||++.+. .|    ++.+|||+||..||.+|+..+...||.||+++. ..++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~-~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS-SCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc-cccc
Confidence            5789999998642 22    456899999999999999877778999999987 5444

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.25  E-value=1.5e-12  Score=86.74  Aligned_cols=44  Identities=39%  Similarity=0.778  Sum_probs=39.4

Q ss_pred             cccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402           10 KCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus        10 ~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .||||++.+.+|++ ++|||+||..|+.+|+.. +.+||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            49999999988865 799999999999999986 678999998876

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.1e-12  Score=79.49  Aligned_cols=46  Identities=22%  Similarity=0.437  Sum_probs=38.7

Q ss_pred             ccccCCcccCCCc----eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            9 FKCPISLEIMSDP----VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         9 ~~C~ic~~~~~~P----v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +.||||++.|.++    +..+|||.||+.|+.+|+..++.+||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            3699999988533    345899999999999999876778999999886

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.13  E-value=6.1e-12  Score=79.47  Aligned_cols=48  Identities=33%  Similarity=0.776  Sum_probs=40.5

Q ss_pred             CCCCccccCCcccCCCc---eec-CCchHhhHHHHHHHHhcCCCCCCCCCCCC
Q 017402            5 FPDDFKCPISLEIMSDP---VIL-SSGHTFDRASIQRWLDSGHRTCPITKLPL   53 (372)
Q Consensus         5 ~~~~~~C~ic~~~~~~P---v~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~   53 (372)
                      ++++..|+||++.|.+.   +++ .|||.||..|+.+|+.. +.+||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            56788999999998753   445 59999999999999986 67899999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.9e-10  Score=82.87  Aligned_cols=49  Identities=18%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             CCCccccCCcccCCCc------------------eecCCchHhhHHHHHHHHhcC----CCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDP------------------VILSSGHTFDRASIQRWLDSG----HRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~P------------------v~~~cgh~~c~~ci~~~~~~~----~~~CP~c~~~~~   54 (372)
                      ..+..|+||++.|.++                  ..++|||.||..||..|+...    ..+||.||..+.
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            3456799999987653                  346899999999999999753    357999998776

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=5.2e-07  Score=76.60  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=147.3

Q ss_pred             chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402           89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV  168 (372)
Q Consensus        89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  168 (372)
                      .+.|+..|+++  ++.+|..|+..|..+..  +         ..++.|+++++  +.++.++..|+.+|..+........
T Consensus        21 ~~~L~~~L~d~--~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~--d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          21 DDELFRLLDDH--NSLKRISSARVLQLRGG--Q---------DAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHc--CCCHHHHHHHHHHHHHhcccccccc
Confidence            35688999876  89999999999987643  2         24799999999  8999999999999999865433222


Q ss_pred             cccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          169 GLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       169 ~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                           ..++.+.. ++++.+..++..++.+|..+.....    ... ...++.+...+.+... .++..|+.++..... 
T Consensus        86 -----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~-~~~~~~l~~~~~d~~~-~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYS-PKIVEQSQITAFDKST-NVRRATAFAISVIND-  153 (276)
T ss_dssp             -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHTTCSCH-HHHHHHHHHHHTC---
T ss_pred             -----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhh-HHHHHHHHHHhcCcch-HHHHHHHHHHhhcch-
Confidence                 12333444 4567899999999999999865432    112 3578888888887766 888888887776542 


Q ss_pred             CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH--------------hCC--HhHHHHH------HhccchHHHH
Q 017402          248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL--------------VKC--KEGREEM------MRVSGCVGVF  301 (372)
Q Consensus       248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L--------------~~~--~~~~~~i------~~~~g~i~~L  301 (372)
                               ...++.++.++...    ...+..++..+              ..+  ...+...      .....+++.|
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L  224 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL  224 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHH
Confidence                     22344444444221    11111111111              111  1111111      1124578888


Q ss_pred             HHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHH
Q 017402          302 VKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQ  363 (372)
Q Consensus       302 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~  363 (372)
                      +..+.+  +.++..|+.+|..+..           .+.++.|..++.+ ++.+++..|...|+
T Consensus       225 ~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            888764  4577888888877642           3478888888876 47789999988874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.1e-07  Score=85.63  Aligned_cols=211  Identities=10%  Similarity=0.050  Sum_probs=111.8

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcC--hHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRD--SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG  169 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  169 (372)
                      |+..|++.  +..+|..|++.|..++..-  +..+     ...+|.|.+.++   .+.+++..++..|.++...-.+.+ 
T Consensus        15 l~~~l~~~--~~~~R~~a~~~l~~ia~~lg~~~~~-----~~lip~l~~~~~---~~~ev~~~~~~~l~~~~~~~~~~~-   83 (588)
T d1b3ua_          15 LIDELRNE--DVQLRLNSIKKLSTIALALGVERTR-----SELLPFLTDTIY---DEDEVLLALAEQLGTFTTLVGGPE-   83 (588)
T ss_dssp             HHHHTTCS--CHHHHHHHHHTHHHHHHHSCHHHHH-----HTHHHHHHHTCC---CCHHHHHHHHHHHTTCSGGGTSGG-
T ss_pred             HHHHhcCC--CHHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHcCChh-
Confidence            56666664  8899999999998887532  2222     345788888876   345677778888887764311111 


Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE  249 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~  249 (372)
                       .-...++.+..++.+++..+|..|+.+|..++...... .+..  -.+|.+..+..+... ..+..|+..+..+...-.
T Consensus        84 -~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~-~~~~--~l~p~i~~L~~~~~~-~~r~~a~~ll~~~~~~~~  158 (588)
T d1b3ua_          84 -YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-DLEA--HFVPLVKRLAGGDWF-TSRTSACGLFSVCYPRVS  158 (588)
T ss_dssp             -GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-HHHH--THHHHHHHHHTCSSH-HHHHHHGGGHHHHTTTSC
T ss_pred             -HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH-HHHH--HHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhh
Confidence             11345677777777788889999999888886443221 1111  234433344443333 455555555555544221


Q ss_pred             hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402          250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC  324 (372)
Q Consensus       250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  324 (372)
                      ...   ....++.+..++.+.    ++.++..+..++..-... .+ . ...++.+..++.+.++.++..|+.++..++
T Consensus       159 ~~~---~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~-~~-~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~  231 (588)
T d1b3ua_         159 SAV---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NV-K-SEIIPMFSNLASDEQDSVRLLAVEACVNIA  231 (588)
T ss_dssp             HHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HH-H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH-HH-H-HHHHHHHHHHhcCCchhhHHHHHHHHHHhh
Confidence            110   111234444444322    444555555554421111 11 1 123444444444444455555555544443

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.73  E-value=2.8e-09  Score=68.57  Aligned_cols=49  Identities=18%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             CCCccccCCcccCCCceecCC-----chHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402            6 PDDFKCPISLEIMSDPVILSS-----GHTFDRASIQRWLDS-GHRTCPITKLPLP   54 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~c-----gh~~c~~ci~~~~~~-~~~~CP~c~~~~~   54 (372)
                      ++...|+||++.+.++...+|     +|.||+.|+.+|+.. ++.+||.||.++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            456789999999988876655     599999999999964 5678999999876

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.1e-09  Score=74.18  Aligned_cols=46  Identities=24%  Similarity=0.456  Sum_probs=37.6

Q ss_pred             CccccCCcccCCCc------------------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMSDP------------------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~~P------------------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      +-.|+||.+.+.+|                  +.++|||.||..||.+|+.. +.+||.||+++.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            34599998877652                  34689999999999999986 568999999875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.6e-07  Score=87.74  Aligned_cols=247  Identities=15%  Similarity=0.115  Sum_probs=163.8

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV  180 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv  180 (372)
                      .+..+|..|+..+..++....  ... .+.-.+|.+..+..  +.....+..|+..+..+...-....   ....++.+.
T Consensus        99 ~~~~Vr~~a~~~l~~i~~~~~--~~~-~~~~l~p~i~~L~~--~~~~~~r~~a~~ll~~~~~~~~~~~---~~~l~~~~~  170 (588)
T d1b3ua_          99 EETVVRDKAVESLRAISHEHS--PSD-LEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYPRVSSAV---KAELRQYFR  170 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSC--HHH-HHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTTTSCHHH---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCC--HHH-HHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHH
Confidence            377899999999999986432  112 23334555556665  5566778888877777754422111   133577888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402          181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAV  260 (372)
Q Consensus       181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v  260 (372)
                      +++.+.++.+|..++.++..++..-... .+ . ...++.+..+++++++ .++..|+.++..++..-...  -.....+
T Consensus       171 ~l~~D~~~~VR~~a~~~l~~~~~~~~~~-~~-~-~~l~~~l~~l~~d~~~-~vr~~a~~~l~~i~~~~~~~--~~~~~i~  244 (588)
T d1b3ua_         171 NLCSDDTPMVRRAAASKLGEFAKVLELD-NV-K-SEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQE--DLEALVM  244 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSCHH-HH-H-HTHHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhcHH-HH-H-HHHHHHHHHHhcCCch-hhHHHHHHHHHHhhccCCHH--HHHHHHH
Confidence            8888899999999999999987643222 11 2 3578888888888777 89999999999887532211  1122356


Q ss_pred             HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHH
Q 017402          261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSR  335 (372)
Q Consensus       261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~  335 (372)
                      +.+..++.+.    +..++.+|.+++..-..  .+.. ...++.+..++.+.++.++..|+..+..++..- .+......
T Consensus       245 ~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~-~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~  321 (588)
T d1b3ua_         245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI  321 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhh-hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            7777777443    56677777777653221  1222 347889999999999999999999998887642 22222222


Q ss_pred             hcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402          336 KEGVLDICMGLLEDDNEKVRRNANNLIQT  364 (372)
Q Consensus       336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~  364 (372)
                      -..+++.+...+.+.+..+|..+...+..
T Consensus       322 ~~~i~~~l~~~~~d~~~~vr~~~~~~l~~  350 (588)
T d1b3ua_         322 MSQILPCIKELVSDANQHVKSALASVIMG  350 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHhh
Confidence            34467777777777777777776665543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.3e-07  Score=81.46  Aligned_cols=271  Identities=12%  Similarity=0.090  Sum_probs=164.6

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc--c
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN--K  167 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~--~  167 (372)
                      +.+++.+.+...+...+..++..+..++.........-.-...++.++..+.+.+.+.+++..++.++.++......  .
T Consensus       130 ~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~  209 (458)
T d1ibrb_         130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD  209 (458)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            45777777766677778888888888775433222222223456777778874445678999999999887654221  1


Q ss_pred             ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .........+.+...+.+++.+++..++.++..+....... ..... ....+.+.....+..+ .++..|+..+..++.
T Consensus       210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~-~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDID-EVALQGIEFWSNVCD  287 (458)
T ss_dssp             SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSH-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccH-HHHHHHHHHHHHHHH
Confidence            11222345666777777889999999999999987544221 11112 2344445555666655 888888888877753


Q ss_pred             CCch-----------------hHHHH----hcCchHHHHHHHhh-------h----HHHHHHHHHHHhCCHhHHHHHHhc
Q 017402          247 FPEN-----------------RKRVV----SCGAVPILMRLADA-------G----LERAVEVLSILVKCKEGREEMMRV  294 (372)
Q Consensus       247 ~~~~-----------------~~~i~----~~g~v~~L~~ll~~-------~----~e~a~~~L~~L~~~~~~~~~i~~~  294 (372)
                      ....                 .....    -...++.+...+..       .    +..+..++..++.....  .+.. 
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~-  364 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-  364 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH-
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhhh-
Confidence            2110                 00000    01122333333311       0    33455555555542111  1121 


Q ss_pred             cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          295 SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       295 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                       ..++.+...+.+.+...++.|+.+|..++... ++.....+ ..+++.++..+++.++.||..|.++|..+.+
T Consensus       365 -~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         365 -HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             -HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             24566667777788899999999999988542 22212222 3488999999999999999999999987654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=2.8e-06  Score=76.28  Aligned_cols=262  Identities=12%  Similarity=0.057  Sum_probs=171.0

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRV  179 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~l  179 (372)
                      +.-....+...+..++..+..+....-...-...+...|.. .++.+.+..++..+..+...++.|..+.+  ...++.+
T Consensus       135 d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~-~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l  213 (477)
T d1ho8a_         135 FQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQN-IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTL  213 (477)
T ss_dssp             HHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHC-TTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhc-ccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHH
Confidence            44456666777777776443222211111111122222322 56788888999999999889999987754  4567777


Q ss_pred             HHHHhc--C---------------ChHHHHHHHHHHHHhcccccchhhhccc-cchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402          180 VAALRF--G---------------SPDCRAIAATIITSLAVVEVNKATIGDY-PYAINALVSLLQNGKLIREKKEAATAL  241 (372)
Q Consensus       180 v~~L~~--~---------------~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL  241 (372)
                      +..|+.  +               ..+.+-.++-.++-|+...+....+... .+.|+.|+.+++...-..+..-++.+|
T Consensus       214 ~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l  293 (477)
T d1ho8a_         214 FKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISII  293 (477)
T ss_dssp             HHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            777754  1               2355678899999999877766666541 256999999998654338999999999


Q ss_pred             HhhcCCCc--h----hHHHHhcCchHHHHHHHhhh---HHHHH---HHH--------HHHhCCHhHHHH-----------
Q 017402          242 YALTSFPE--N----RKRVVSCGAVPILMRLADAG---LERAV---EVL--------SILVKCKEGREE-----------  290 (372)
Q Consensus       242 ~~L~~~~~--~----~~~i~~~g~v~~L~~ll~~~---~e~a~---~~L--------~~L~~~~~~~~~-----------  290 (372)
                      .|+.....  +    ...++..++++. +..|...   .+...   ..|        ..++..++...+           
T Consensus       294 ~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~  372 (477)
T d1ho8a_         294 LQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPP  372 (477)
T ss_dssp             HHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGG
T ss_pred             HHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCC
Confidence            99987532  2    334555566544 5555221   11111   111        112222222221           


Q ss_pred             -----HHh--------c-cchHHHHHHHHhc----------CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHH
Q 017402          291 -----MMR--------V-SGCVGVFVKMLKT----------GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGL  346 (372)
Q Consensus       291 -----i~~--------~-~g~i~~L~~ll~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~l  346 (372)
                           |..        . ...+..|+++|.+          .++.+.--|+.=+..++.+.|+.+..+.+.|+=..++++
T Consensus       373 H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~L  452 (477)
T d1ho8a_         373 HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMEL  452 (477)
T ss_dssp             GGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHH
T ss_pred             cCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHH
Confidence                 221        1 1257889999962          245556678888899999999999999999999999999


Q ss_pred             hhcccHHHHHHHHHHHHHH
Q 017402          347 LEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       347 l~~~~~~v~~~a~~~L~~l  365 (372)
                      +.+.+++||..|..+++.+
T Consensus       453 m~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         453 LNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             TSCSSHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999755

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.4e-05  Score=65.88  Aligned_cols=204  Identities=12%  Similarity=0.036  Sum_probs=123.5

Q ss_pred             hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402          129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK  208 (372)
Q Consensus       129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~  208 (372)
                      +....+.|+++|.  +.++.++..|+.+|..+..          ...++.++.++++.++.++..|+.+|..+.......
T Consensus        17 ~~~~~~~L~~~L~--d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~   84 (276)
T d1oyza_          17 KKLNDDELFRLLD--DHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   84 (276)
T ss_dssp             HTSCHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             ccCCHHHHHHHhc--CCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            3456778999999  8999999999999987632          346899999999999999999999999885432221


Q ss_pred             hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402          209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC  284 (372)
Q Consensus       209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~  284 (372)
                            ...++.|...+.+..++.++..|+.+|.+++.......    ...++.+...+.+.    +..++.++..... 
T Consensus        85 ------~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          85 ------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ------cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence                  23455666655544444899999999999876433211    12344555555332    2223333322211 


Q ss_pred             HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH---------------HH----H---HhcChhHH
Q 017402          285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC---------------GD----S---RKEGVLDI  342 (372)
Q Consensus       285 ~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---------------~~----~---~~~g~~~~  342 (372)
                                ...++.+..++...+...+..+..++..+........               ..    +   ....+++.
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  223 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV  223 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence                      2344445555544444444444444433332211111               00    1   11336788


Q ss_pred             HHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          343 CMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       343 l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      |+..+++  +.+|..|..+|..+.+
T Consensus       224 L~~~l~d--~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         224 LCDELKK--NTVYDDIIEAAGELGD  246 (276)
T ss_dssp             HHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred             HHHHhCC--hHHHHHHHHHHHHcCC
Confidence            8887775  3578888888887653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.1e-05  Score=78.06  Aligned_cols=257  Identities=12%  Similarity=0.079  Sum_probs=152.2

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--ccccccccccCChHH
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNKVGLVAEGAVSR  178 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~  178 (372)
                      .+...|..|+.++..++.+..+...... ...++.|+..|.  +.++.++..++++|..++..  +...... -...++.
T Consensus       407 ~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~  482 (888)
T d1qbkb_         407 HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTE  482 (888)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTT--SSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHH
T ss_pred             chhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHH
Confidence            3678899999999998875443222211 135677788887  78999999999999988753  1211111 2467888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC---CchhHHHH
Q 017402          179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF---PENRKRVV  255 (372)
Q Consensus       179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~---~~~~~~i~  255 (372)
                      ++..+.++++.++..|+++|.++....... ..--...+++.|+..+..... ..+..+..++..++..   .-....++
T Consensus       483 ll~~l~d~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~-~~~~~~~~al~~l~~~~~~~~~~~~~~  560 (888)
T d1qbkb_         483 LLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYI  560 (888)
T ss_dssp             HHHHHSSSCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhhhccccchHHH
Confidence            999998899999999999999997543211 111113577777777776554 4444444444444321   00011100


Q ss_pred             hcCchHHH-------------------------------------------HHHHhhh---------------------H
Q 017402          256 SCGAVPIL-------------------------------------------MRLADAG---------------------L  271 (372)
Q Consensus       256 ~~g~v~~L-------------------------------------------~~ll~~~---------------------~  271 (372)
                      + ..++.+                                           +.++...                     .
T Consensus       561 ~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  639 (888)
T d1qbkb_         561 Q-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  639 (888)
T ss_dssp             H-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             H-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            0 001111                                           1111000                     0


Q ss_pred             HHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc
Q 017402          272 ERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD  350 (372)
Q Consensus       272 e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~  350 (372)
                      ..++.++..+...- ..-..++.....++.+...+++.++.+++.|..++..++...+......++ ..++.+...+++.
T Consensus       640 ~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~  718 (888)
T d1qbkb_         640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE  718 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC
Confidence            11222223332210 111122222345677778888888999999999999888764443322222 2677788888888


Q ss_pred             cHHHHHHHHHHHHHH
Q 017402          351 NEKVRRNANNLIQTL  365 (372)
Q Consensus       351 ~~~v~~~a~~~L~~l  365 (372)
                      ...++..|.+++-.+
T Consensus       719 ~~~v~~~a~~~ig~i  733 (888)
T d1qbkb_         719 FISVCNNATWAIGEI  733 (888)
T ss_dssp             GHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            889999999988654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=2.5e-05  Score=76.38  Aligned_cols=265  Identities=15%  Similarity=0.093  Sum_probs=166.6

Q ss_pred             hhHHHHhhc--cCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402           90 QTLISVLTS--KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK  167 (372)
Q Consensus        90 ~~li~~L~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  167 (372)
                      .++.+.|..  .+.|+++|.+|-+.|..+...+.        .+.+..|.+.+.+.+.+..++..|+-.|.|........
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~   75 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV   75 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccch
Confidence            345555543  23488999999999988876443        24677888888754456788999999998865432110


Q ss_pred             c----------ccc---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHH
Q 017402          168 V----------GLV---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREK  234 (372)
Q Consensus       168 ~----------~i~---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~  234 (372)
                      .          .+-   ....-..++..+.+++..++..++.++..++..+-...   .-...++.|+..+.+.++...+
T Consensus        76 ~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~---~wpeli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC---chHHHHHHHHHHhcCCCcHHHH
Confidence            0          010   12234567777888899999999999999876542111   1146899999999887664677


Q ss_pred             HHHHHHHHhhcCCCchh-HHHHhc--CchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHH-HHHhccchHHHHHHH
Q 017402          235 KEAATALYALTSFPENR-KRVVSC--GAVPILMRLADAG------LERAVEVLSILVKCKEGRE-EMMRVSGCVGVFVKM  304 (372)
Q Consensus       235 ~~a~~aL~~L~~~~~~~-~~i~~~--g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~-~i~~~~g~i~~L~~l  304 (372)
                      ..|+.+|..++..-... ..+...  ..+..++..+.+.      +..++.++.++...-.... ........++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            88889998887432211 111110  1233333333211      4567777777766322211 111113356778888


Q ss_pred             HhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          305 LKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       305 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      +...++.++..+..+|..++...++.....+..-+...+....++.++.++..+...+..+
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l  293 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI  293 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            8888999999999999998865444322222232344455566677889998888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-08  Score=97.79  Aligned_cols=268  Identities=15%  Similarity=0.140  Sum_probs=165.2

Q ss_pred             hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHH--HHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc
Q 017402           91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASR--RKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN  166 (372)
Q Consensus        91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~  166 (372)
                      .+++.+.++  ++..+..|+..|..++.+.....  .....  ...++.++..+.  +.++.++..|+.++..+......
T Consensus       130 ~L~~~l~s~--~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~--~~~~~vr~~al~~l~~~~~~~~~  205 (888)
T d1qbkb_         130 KLCSLLDSE--DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQ  205 (888)
T ss_dssp             TTTTSSTGG--GSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGG--SSSSCSSSTTTHHHHGGGGCCCS
T ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhhH
Confidence            344445443  45566678888888886433211  11111  236788888888  67788899999998876544221


Q ss_pred             cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      .....-...++.+.....+.+.+++..++.+|..+......+.. -...++++.++..+.+.++ +++..|+..+..++.
T Consensus       206 ~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~-~~l~~i~~~~l~~~~~~~e-~v~~~a~ef~~~~~e  283 (888)
T d1qbkb_         206 ALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQDE-NVALEACEFWLTLAE  283 (888)
T ss_dssp             TTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTT-TTTTTTTTTTTTTTTSSCH-HHHHHHHHHHCCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHH
Confidence            11111135667777777778889999999999888654322211 1113566666666666555 777777766554442


Q ss_pred             CCch----------------------------------------------------------------------------
Q 017402          247 FPEN----------------------------------------------------------------------------  250 (372)
Q Consensus       247 ~~~~----------------------------------------------------------------------------  250 (372)
                      ....                                                                            
T Consensus       284 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (888)
T d1qbkb_         284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEID  363 (888)
T ss_dssp             GGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhh
Confidence            1100                                                                            


Q ss_pred             ----------hHHH-------H---hcCchHHHHHHHh----hh----HHHHHHHHHHHhCCHh-HHHHHHhccchHHHH
Q 017402          251 ----------RKRV-------V---SCGAVPILMRLAD----AG----LERAVEVLSILVKCKE-GREEMMRVSGCVGVF  301 (372)
Q Consensus       251 ----------~~~i-------~---~~g~v~~L~~ll~----~~----~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L  301 (372)
                                |...       .   ....++.++..+.    +.    ++.++.+++.++.... ......  ...++.|
T Consensus       364 ~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l--~~li~~l  441 (888)
T d1qbkb_         364 DDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHL  441 (888)
T ss_dssp             CCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH--HHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc--hhhhHHH
Confidence                      0000       0   1124556665552    22    6678888888876422 222222  2467888


Q ss_pred             HHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          302 VKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       302 ~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      +..+.+.++.+|..|+++|..++.... ...... -..+++.++..+.+.+++|+.+|+++|..+-+
T Consensus       442 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         442 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888888999999999999988875321 111111 24578888998999999999999999987754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.8e-06  Score=87.15  Aligned_cols=263  Identities=13%  Similarity=0.115  Sum_probs=161.1

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402           92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV  171 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  171 (372)
                      +++.+.+.  |++.|.-|+..|.+....+......-....+++.|++.|.  +.++++|..|+.+|..+...-....   
T Consensus         8 ll~k~~~~--D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~--D~~~~Vq~~A~k~l~~l~~~~~~~~---   80 (1207)
T d1u6gc_           8 LLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKEYQ---   80 (1207)
T ss_dssp             HHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCHHH---
T ss_pred             HHHhcCCC--CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCcHhh---
Confidence            45555554  8999999998888765322111111112236788999998  8999999999999988865522111   


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHhccc----ccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402          172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVV----EVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTS  246 (372)
Q Consensus       172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~----~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~  246 (372)
                      -...++.|+..+.+++...+..+..+|..+...    ......... ....++.|...+....+..++..|+.+|..+..
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            134567777777777888888777777655321    111111100 023455555555555555788899999988765


Q ss_pred             CCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHH
Q 017402          247 FPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTL  320 (372)
Q Consensus       247 ~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L  320 (372)
                      .-. .-... ....++.++..+.++    ++.|+.+|..++..-..  ...  ...++.++..+.. .+...+..++.++
T Consensus       161 ~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l  235 (1207)
T d1u6gc_         161 RQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCI  235 (1207)
T ss_dssp             HTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            221 11100 112445555555443    67789999998874322  111  2356777766643 4556677788888


Q ss_pred             HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      ..++...+.....- -..+++.++..+.+.++++|+.+..++..+..
T Consensus       236 ~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         236 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            88876543221111 14588999999999999999999999876643

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.9e-07  Score=63.69  Aligned_cols=44  Identities=16%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             CccccCCcccCC--C-ceecCCchHhhHHHHHHHHhc----CC---CCCCCCCC
Q 017402            8 DFKCPISLEIMS--D-PVILSSGHTFDRASIQRWLDS----GH---RTCPITKL   51 (372)
Q Consensus         8 ~~~C~ic~~~~~--~-Pv~~~cgh~~c~~ci~~~~~~----~~---~~CP~c~~   51 (372)
                      ...||||.+.+.  + |...+|||.||+.|+..|+..    +.   ..||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457999998774  3 445689999999999999963    22   26998654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00024  Score=69.34  Aligned_cols=269  Identities=13%  Similarity=0.097  Sum_probs=155.8

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc-
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN-  166 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~-  166 (372)
                      |.+++.+.+++.+...+..++..|..++..-.  ...+..  ...++.++..+.+.+.+.+++..++.++.+....-.. 
T Consensus       131 ~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~--~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         131 PQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            55667777765567788889999998876322  111211  2457778888864445678999999998775433111 


Q ss_pred             -cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          167 -KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       167 -~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                       .......-.++.+...+.+++.+++..++..+..+....... ..... ....+.+...+.+..+ ++...+...+..+
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~-~~~~~~~~~~~~i  286 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDID-EVALQGIEFWSNV  286 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCSSH-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccH-HHHHHHHHHHHHH
Confidence             111111224556666667789999999999999887544221 11122 2355556666666655 7777777776666


Q ss_pred             cCCCchh---------------------HHHHhcCchHHHHHHHhh-------h----HHHHHHHHHHHhCCHhHHHHHH
Q 017402          245 TSFPENR---------------------KRVVSCGAVPILMRLADA-------G----LERAVEVLSILVKCKEGREEMM  292 (372)
Q Consensus       245 ~~~~~~~---------------------~~i~~~g~v~~L~~ll~~-------~----~e~a~~~L~~L~~~~~~~~~i~  292 (372)
                      +......                     ........++.+...+..       .    ...+..++..++.....  .+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~  364 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV  364 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--hhh
Confidence            5321100                     000011122233333210       0    23344445444432111  111


Q ss_pred             hccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402          293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG  367 (372)
Q Consensus       293 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  367 (372)
                      .  ..++.+...+.+.+...++.+..++..+.... .+...... ..+++.++..+.+.++.+|..|.+++..+.+
T Consensus       365 ~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         365 P--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             H--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             h--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            1  13444455555667788888888888876542 33323322 3378899999999999999999999976643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.91  E-value=3.4e-05  Score=55.64  Aligned_cols=105  Identities=20%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA  181 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~  181 (372)
                      ++.+|..|++.|..+.            ...++.|+..|.  +.++.++..|+.+|.++.          ..+.++.|+.
T Consensus         5 ~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~--d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~   60 (111)
T d1te4a_           5 NKWVRRDVSTALSRMG------------DEAFEPLLESLS--NEDWRIRGAAAWIIGNFQ----------DERAVEPLIK   60 (111)
T ss_dssp             CCCSSSSCCSSTTSCS------------STTHHHHHHGGG--CSCHHHHHHHHHHHGGGC----------SHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC------------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhcc----------hhhhHHHHHh
Confidence            5566766666665432            135788999999  889999999999998764          2346899999


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      +|++.++.+|..|+.+|..+.          . .++++.|..++++++. .++..|+.+|.
T Consensus        61 ~l~d~~~~VR~~a~~aL~~i~----------~-~~~~~~L~~ll~d~~~-~vr~~A~~aL~  109 (111)
T d1te4a_          61 LLEDDSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTG-FARKVAVNYLE  109 (111)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCT-HHHHHHHHHGG
T ss_pred             hhccchhHHHHHHHHHHHHhC----------c-cchHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence            999999999999999998763          2 4789999999998877 99999988773

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.7e-05  Score=66.71  Aligned_cols=261  Identities=13%  Similarity=0.070  Sum_probs=157.3

Q ss_pred             HHHHhhcc-CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc-cc
Q 017402           92 LISVLTSK-SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN-KV  168 (372)
Q Consensus        92 li~~L~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~  168 (372)
                      +++.|..- +.|.++|.+|-+.|..+...++        .+.+..|...+.+.+.+..++..|+-.|.|.... ... ..
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            34444431 2378899999999999887442        2347778888874334567888888888774332 111 11


Q ss_pred             c-------c---cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-hHHHHHH
Q 017402          169 G-------L---VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL-IREKKEA  237 (372)
Q Consensus       169 ~-------i---~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~~a  237 (372)
                      .       +   ......+.++..+.+.+.. +..++.++..++..+....   ...+.++.++..+.+... ...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCcc---cCcchhHHHHHHHHhhcchHHHHHHH
Confidence            1       0   0123445566666555433 3445566666554332221   114789999999887543 3567778


Q ss_pred             HHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHH--HHHhccchHHHHHHHHhcC
Q 017402          238 ATALYALTSFP-ENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGRE--EMMRVSGCVGVFVKMLKTG  308 (372)
Q Consensus       238 ~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~--~i~~~~g~i~~L~~ll~~~  308 (372)
                      +.++..++..- .....-.-...++.++..+.++      +..++..+.++........  .... ....+.+..++.+.
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  228 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCP  228 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhcCC
Confidence            88888776432 2211111223556677777332      4557777777776433221  1111 23556677777778


Q ss_pred             ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          309 SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      ++.++..++.+|..++...++.-..-+.....+.+.....+.+++++..|...+..+
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            899999999999999876554433223334555566677788889999888887665

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.5e-05  Score=75.48  Aligned_cols=223  Identities=13%  Similarity=0.095  Sum_probs=138.7

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCC----CCcc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLS----LDDD  165 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~----~~~~  165 (372)
                      +.+++.|++.  ++++|..|++.|..++..-++.  .+  ...++.|...+.  +.+...+..+..+|..+.    ....
T Consensus        48 ~~ll~~L~D~--~~~Vq~~A~k~l~~l~~~~~~~--~~--~~l~~~L~~~l~--~~~~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          48 KMILKLLEDK--NGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHHHHhCcHh--hH--HHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHhcccccc
Confidence            5577777765  8999999999999998754322  11  234666777676  566777777776665532    2211


Q ss_pred             cccc--ccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          166 NKVG--LVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       166 ~~~~--i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      ....  ......++.+...+.. .+..++..++.+|..+......... .....+++.|+..+.+... .+++.|+.+|.
T Consensus       120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~-~~~~~il~~l~~~l~~~~~-~vR~~A~~~l~  197 (1207)
T d1u6gc_         120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLPQLTSPRL-AVRKRTIIALG  197 (1207)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSH-HHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhH-HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence            1110  0111233333343333 4678888889888888654322111 1113688888888888877 89999999999


Q ss_pred             hhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhH
Q 017402          243 ALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCS  316 (372)
Q Consensus       243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a  316 (372)
                      .++..-...  . -...++.++..+...     +..++.++..++.....  .+.. -...++.+.+.+...++.+++.+
T Consensus       198 ~l~~~~~~~--~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~a  272 (1207)
T d1u6gc_         198 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYC  272 (1207)
T ss_dssp             HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred             HHHHHCCHH--H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence            998643211  1 113566777766332     44566777777652211  1222 24578899999988889999999


Q ss_pred             HHHHHHHhcCC
Q 017402          317 LFTLSCLCCCS  327 (372)
Q Consensus       317 ~~~L~~l~~~~  327 (372)
                      ..++..++...
T Consensus       273 l~~l~~l~~~~  283 (1207)
T d1u6gc_         273 IQAFESFVRRC  283 (1207)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHHHhC
Confidence            99998887653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.73  E-value=3.6e-06  Score=61.05  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402          232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT  307 (372)
Q Consensus       232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~  307 (372)
                      .++..|+.+|..+.           ..+++.|+.+|+++    +..++.+|.++..           .+.++.|..++.+
T Consensus         7 ~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d   64 (111)
T d1te4a_           7 WVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLED   64 (111)
T ss_dssp             CSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhcc
Confidence            56666666655432           23678888888654    5567777765543           4578999999999


Q ss_pred             CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402          308 GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ  363 (372)
Q Consensus       308 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~  363 (372)
                      .++.++..|+.+|..+..           .+.++.|..++++.++.||+.|..+|.
T Consensus        65 ~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999988642           236888889999999999999998875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00083  Score=65.13  Aligned_cols=258  Identities=12%  Similarity=0.075  Sum_probs=144.0

Q ss_pred             CChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc-cccccccCCh
Q 017402          101 SPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN-KVGLVAEGAV  176 (372)
Q Consensus       101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~i~~~g~i  176 (372)
                      ++...+..|+..|..++......-..+..  ...+..++..+.....+..++..++.++.++... +.+ .........+
T Consensus       147 ~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  226 (861)
T d2bpta1         147 QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM  226 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHH
Confidence            34567778899999888643322111111  1223334444432345678999999999886544 211 1111123456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHH-HHhhcCCchHHHHHHHHHHHhhcCCCchh-HH
Q 017402          177 SRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALV-SLLQNGKLIREKKEAATALYALTSFPENR-KR  253 (372)
Q Consensus       177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~  253 (372)
                      +.+...+.+++.+++..+...+..+....... ....  ...+..+. ...++.++ .++..+...+..++...... ..
T Consensus       227 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~  303 (861)
T d2bpta1         227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM--EQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYE  303 (861)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH--HHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888899999999999999987543211 1111  12344443 33344444 88888888887765432111 11


Q ss_pred             HHh----------------cCchHHHHHHHhhh-----------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh
Q 017402          254 VVS----------------CGAVPILMRLADAG-----------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK  306 (372)
Q Consensus       254 i~~----------------~g~v~~L~~ll~~~-----------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~  306 (372)
                      ..+                ...++.+...+...           ...+..++..++.....  .+..  -..+.+...+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~  379 (861)
T d2bpta1         304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HILE--PVLEFVEQNIT  379 (861)
T ss_dssp             HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHTT
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--hhhh--hhcchhhhhhh
Confidence            110                01233334443110           22233444444332111  0111  12233334445


Q ss_pred             cCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402          307 TGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS  366 (372)
Q Consensus       307 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~  366 (372)
                      +.+...++.|..++..+..... ........ .+++.++..+.+.++.+|..|.+++..+.
T Consensus       380 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            5677888899999988876533 33233333 37889999999999999999999987654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00065  Score=66.17  Aligned_cols=262  Identities=12%  Similarity=0.061  Sum_probs=161.3

Q ss_pred             HHHHhhcc-CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc-cc
Q 017402           92 LISVLTSK-SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN-KV  168 (372)
Q Consensus        92 li~~L~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~  168 (372)
                      |++.|... +.|.+.|..|-+.|..+...+.        .|.+..|.+.+.+.+.+..+|..|+-.|.|.... ... +.
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~   74 (876)
T d1qgra_           3 LITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhh
Confidence            44455432 2377889999999988776432        3467888888875445677999999999885422 111 10


Q ss_pred             -------ccc---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-hHHHHHH
Q 017402          169 -------GLV---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL-IREKKEA  237 (372)
Q Consensus       169 -------~i~---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~~a  237 (372)
                             .+-   +...-..++..+.+++. .+..++.++..++..+-..   ..-.+.++.|+..+.+++. ..++..+
T Consensus        75 ~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~---~~Wpeli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          75 QYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCc---cccHHHHHHHHHHhcCCCCcHHHHHHH
Confidence                   111   12344667777766553 4556778888887554211   1114789999999987653 3677788


Q ss_pred             HHHHHhhcCCCchhH-HHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHHH-HHhccchHHHHHHHHhcCC
Q 017402          238 ATALYALTSFPENRK-RVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGREE-MMRVSGCVGVFVKMLKTGS  309 (372)
Q Consensus       238 ~~aL~~L~~~~~~~~-~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~~-i~~~~g~i~~L~~ll~~~~  309 (372)
                      +.+|..++..-.... .-.-...++.++..+.+.      +..++.++.+.......... .....-.++.+...+...+
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            999988875322111 111123567777777332      34466666655543221111 0111124556666667788


Q ss_pred             hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      +.++..++.+|..++...++.....+...+.+.+.....+.+++++..+...+..+
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            89999999999999876665544445555677777777888888888877666544

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.0072  Score=53.80  Aligned_cols=230  Identities=14%  Similarity=0.119  Sum_probs=149.0

Q ss_pred             CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc----c--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc
Q 017402          132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV----A--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE  205 (372)
Q Consensus       132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~  205 (372)
                      ++..++.+|.. ....++....+..+..|..+++....+.    +  .-.-+++...+..++.-....+..++..++...
T Consensus        75 ~~~~~l~lL~~-~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLST-SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHS-CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhh-cCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            58889999985 3567788888887777655544333222    1  112344444454455556666777777776554


Q ss_pred             cchhhhccccchHHH---HHHHh-hcCCchHHHHHHHHHHHhhcCCCchhHHHHh--cCchHHHHHHHhhh---------
Q 017402          206 VNKATIGDYPYAINA---LVSLL-QNGKLIREKKEAATALYALTSFPENRKRVVS--CGAVPILMRLADAG---------  270 (372)
Q Consensus       206 ~~~~~i~~~~g~i~~---Lv~ll-~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~L~~ll~~~---------  270 (372)
                      .......   +.++.   +...+ ...+. .....|+.+|..|...++.|..+..  ...+++|++.|...         
T Consensus       154 ~~~~~~~---e~l~~~~~~l~~l~~~~~~-~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~  229 (477)
T d1ho8a_         154 LHNVKLV---EKLLKNNNLINILQNIEQM-DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  229 (477)
T ss_dssp             TCCHHHH---HHHHHCHHHHHHHHCTTCH-HHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             ccccchH---HHHHHhhHHHHHhhccccc-chHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchh
Confidence            3322211   22222   22223 33444 7777888899999999999998863  45688888888331         


Q ss_pred             ------------HHHHHHHHHHHhCCHhHHHHHHhcc-chHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH-----HHH
Q 017402          271 ------------LERAVEVLSILVKCKEGREEMMRVS-GCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ-----EIC  331 (372)
Q Consensus       271 ------------~e~a~~~L~~L~~~~~~~~~i~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~-----~~~  331 (372)
                                  .=.++-+++-|+..++....+..+. +.++.|+.+++. ..+++.+-++.+|.|++....     ...
T Consensus       230 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~  309 (477)
T d1ho8a_         230 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  309 (477)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             hcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence                        1147788999999998888887732 458899998865 567888999999999986422     234


Q ss_pred             HHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHHHh
Q 017402          332 GDSRKEGVLDICMGLLED--DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       332 ~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~  366 (372)
                      ..|+..++++.+..+...  .++++.+.-..+-..|.
T Consensus       310 ~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~  346 (477)
T d1ho8a_         310 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE  346 (477)
T ss_dssp             HHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            567777877665555543  47777766655554444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.15  Score=42.41  Aligned_cols=196  Identities=16%  Similarity=0.129  Sum_probs=145.7

Q ss_pred             ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cch----hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402          170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNK----ATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL  244 (372)
Q Consensus       170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L  244 (372)
                      +.+.+.+..|+..|..-+-+.|..++.+..++-... ..+    +.+.....++..|+.-...   +++.-.+...|+..
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~---~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC---cchhhhhhHHHHHH
Confidence            445788889999998889999999999999887654 222    3344435566666655433   36777888889999


Q ss_pred             cCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhHH
Q 017402          245 TSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCSL  317 (372)
Q Consensus       245 ~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a~  317 (372)
                      ..++.....+.....+..+.+.++.+    ...|..++.. |..+..-...+..  .+..+..+-.+|.+++-..++.++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            99998888888888888888888665    3345555543 3456555555554  245677788888888888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHh---c-ChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402          318 FTLSCLCCCSQEICGDSRK---E-GVLDICMGLLEDDNEKVRRNANNLIQTLSGNP  369 (372)
Q Consensus       318 ~~L~~l~~~~~~~~~~~~~---~-g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  369 (372)
                      ..|..+-.. +.+...|.+   . .-+..++.++++.+..++-.|=.+.+.+.-++
T Consensus       222 KLLgelLld-r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         222 KLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            999999876 655555533   2 36999999999999999999999988876655

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.074  Score=44.32  Aligned_cols=180  Identities=12%  Similarity=0.108  Sum_probs=134.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKV  168 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~  168 (372)
                      |+++..|-.+-++++.-..+-..|+...+ .+...+.+........+++...  .++-++...|..++..+ ..++....
T Consensus       115 ~eil~~L~~gye~~eiAl~~G~mLREcik-~e~lak~iL~s~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~hk~~~a  191 (330)
T d1upka_         115 QNILFMLLKGYESPEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSA  191 (330)
T ss_dssp             THHHHHHHHGGGSTTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHHhhcCCcchhhhhhHHHHHHHh-hHHHHHHHHccHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHhCHHHHH
Confidence            67888887777788888888888998887 5667888888878888888888  78889999999999874 44443333


Q ss_pred             ccccc---CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh---hccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          169 GLVAE---GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT---IGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       169 ~i~~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .+...   -.+...-.+|.+++.-++.++...|+.+-.+..|...   .+....-+..++.+|++.+. .++-.|..+..
T Consensus       192 efl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk-~Iq~EAFhVFK  270 (330)
T d1upka_         192 EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR-NIQFEAFHVFK  270 (330)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH-HHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchh-hHHHHhhhHhh
Confidence            33332   3566677888999999999999999999887766544   34436789999999998877 89999999887


Q ss_pred             hhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHh
Q 017402          243 ALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILV  282 (372)
Q Consensus       243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~  282 (372)
                      -...++.-         -+.+.++|...+++.+..|..+-
T Consensus       271 vFVANpnK---------p~~I~~IL~~Nr~kLl~fl~~f~  301 (330)
T d1upka_         271 VFVANPNK---------TQPILDILLKNQAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHCSSC---------CHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             hhhcCCCC---------CHHHHHHHHHhHHHHHHHHHhCC
Confidence            66665532         23444555444666666666654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.81  E-value=0.0015  Score=53.20  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             HHHHhhccCCChHHHHHHHHHH-----HHHhh-cChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHH-----HhcC
Q 017402           92 LISVLTSKSSPLESKLESLTQL-----TKLSK-RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSL-----LLNL  160 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L-----~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~-----L~~l  160 (372)
                      |+.++++.  ++++|..+++.|     ..+.. .+...|....+.-..+.|..++.  +.+..++..++..     |..+
T Consensus        71 L~~Ll~D~--d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~--D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          71 LTPLIRDS--DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--DRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGTTCS--SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTT--CSSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHhcCC--CHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhc--CCCHHHHHHHHhccchhHHHHH
Confidence            55566654  788888777653     23332 23344555554434566667777  6777777777664     2223


Q ss_pred             CCCcc--ccccccccCChHHHHHHHhcCChHHHHHHHHH
Q 017402          161 SLDDD--NKVGLVAEGAVSRVVAALRFGSPDCRAIAATI  197 (372)
Q Consensus       161 ~~~~~--~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~  197 (372)
                      ..+++  .+..+...-..+.|..++++.+..++..++..
T Consensus       147 ~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            33321  22233333344555666666677777766654

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.68  E-value=0.016  Score=37.50  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=36.8

Q ss_pred             CccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402            8 DFKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP   54 (372)
Q Consensus         8 ~~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~   54 (372)
                      .-.|.||.+-.-     +|.+.  .|+-..|+.|++--..+++..||.|+..+.
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            357999997542     44333  388889999998888888999999999887

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.40  E-value=0.0064  Score=49.33  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHH
Q 017402          133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAAT  196 (372)
Q Consensus       133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~  196 (372)
                      +..|..+++  +.+++++..++..|   .              .+.+..++.+++..++..++.
T Consensus        68 ~~~L~~Ll~--D~d~~VR~~AA~~L---p--------------~~~L~~L~~D~d~~VR~~aa~  112 (233)
T d1lrva_          68 VEALTPLIR--DSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD  112 (233)
T ss_dssp             GGGGGGGTT--CSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHc---C--------------HHHHHHHhcCCChhHHHHHHh
Confidence            556667777  77788887776532   1              123445555666777665554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.46  E-value=0.21  Score=42.49  Aligned_cols=132  Identities=14%  Similarity=0.044  Sum_probs=69.5

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC---CchHHHHHHHHHHHhhc----C
Q 017402          174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG---KLIREKKEAATALYALT----S  246 (372)
Q Consensus       174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~----~  246 (372)
                      ..+..+.+++.++..... .|...|..++....     -. ...+..+.+++.+.   +++.+...+..++++|.    .
T Consensus        88 ~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~-----Pt-~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSA-EATQIVASTLSNQQ-----AT-RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCC-----CC-HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCC-----CC-HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            366777788876654433 24445555543321     11 24566677777643   23356666666666553    3


Q ss_pred             CCchhHHHHhcCchHHHHHHHhh----h----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-------CChh
Q 017402          247 FPENRKRVVSCGAVPILMRLADA----G----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-------GSSR  311 (372)
Q Consensus       247 ~~~~~~~i~~~g~v~~L~~ll~~----~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-------~~~~  311 (372)
                      ....+.    ...++.+...+..    +    .-.++.+|+|+-.           .+.++.|..++..       .+..
T Consensus       161 ~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHH
Confidence            332221    2345566666532    2    2236778888753           3345555555532       1345


Q ss_pred             HHHhHHHHHHHHhcCC
Q 017402          312 AVQCSLFTLSCLCCCS  327 (372)
Q Consensus       312 ~~~~a~~~L~~l~~~~  327 (372)
                      ++..|+.+|..++...
T Consensus       226 vR~aAi~Alr~~~~~~  241 (336)
T d1lsha1         226 VQAEAIMALRNIAKRD  241 (336)
T ss_dssp             HHHHHHHTTTTGGGTC
T ss_pred             HHHHHHHHHHHhhhcC
Confidence            6666666666665543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.68  E-value=2.2  Score=35.90  Aligned_cols=143  Identities=19%  Similarity=0.150  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh
Q 017402          189 DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD  268 (372)
Q Consensus       189 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~  268 (372)
                      .....+...|..+.....+...+....+++..|+..+.+... .++..|+..|..+|..++..      ++         
T Consensus        71 ~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~-~tr~~a~elL~~lc~~~~~~------~g---------  134 (343)
T d2bnxa1          71 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDAAKLLSALCILPQPE------DM---------  134 (343)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHHHHHHHHHHTCCSST------TH---------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch-HHHHHHHHHHHHHHhccCCC------ch---------
Confidence            345566777777766666666665557899999999988877 89999999999998654211      11         


Q ss_pred             hhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCH------HHHHHHHhcChhH
Q 017402          269 AGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQ------EICGDSRKEGVLD  341 (372)
Q Consensus       269 ~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~~~  341 (372)
                        -+.++.++.+..       ...+ .+-+..++..++.+ +...+..++..+-.+....+      ..|.++...|..+
T Consensus       135 --~~~vL~Al~~~~-------~~~e-~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~  204 (343)
T d2bnxa1         135 --NERVLEAMTERA-------EMDE-VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ  204 (343)
T ss_dssp             --HHHHHHHHHHHH-------HHHT-SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH
T ss_pred             --HHHHHHHHHHHH-------HhcC-CCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH
Confidence              112222222211       1122 34566777777553 34555555555555554433      4566778888777


Q ss_pred             HHHHHhhcccHHHHHH
Q 017402          342 ICMGLLEDDNEKVRRN  357 (372)
Q Consensus       342 ~l~~ll~~~~~~v~~~  357 (372)
                      .+-.+-..+++.+..+
T Consensus       205 il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         205 VLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHHHHTTCCCHHHHHH
T ss_pred             HHHHHHccCChHHHHH
Confidence            6665555556555443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.55  E-value=1.2  Score=37.71  Aligned_cols=172  Identities=17%  Similarity=0.160  Sum_probs=105.3

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHH-HhhcChHHHHHHhhcCCHHHHHHHHhhc-------C--CChhHHHHHHHHHhcCC
Q 017402           92 LISVLTSKSSPLESKLESLTQLTK-LSKRDSASRRKLTESGAVSAVLNCLKIH-------S--DGFTLQEKALSLLLNLS  161 (372)
Q Consensus        92 li~~L~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~--~~~~~~~~a~~~L~~l~  161 (372)
                      .|..|.++. ..+.....+..|+- |-.....--+.| ..+|+..|+.+|..-       .  .+...+..++++|..+.
T Consensus         7 yv~~l~~~~-~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           7 YIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC-CccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            566676653 33333445555532 333334445566 567888899888531       1  12457788899999888


Q ss_pred             CCcccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc---chh----------hhccccchHHHHHHHhhc
Q 017402          162 LDDDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV---NKA----------TIGDYPYAINALVSLLQN  227 (372)
Q Consensus       162 ~~~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~---~~~----------~i~~~~g~i~~Lv~ll~~  227 (372)
                      ....+...+. ..+++..++..|.++...++..|..+|..++...+   +..          ...+ .+-+..+++.+++
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS  163 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTST
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHHHHHHhc
Confidence            7766655555 57899999999999999999999999988875421   111          1122 3456777887877


Q ss_pred             CCchHHHHHHHHHHHhhcCCC-c------hhHHHHhcCchHHHHHHH
Q 017402          228 GKLIREKKEAATALYALTSFP-E------NRKRVVSCGAVPILMRLA  267 (372)
Q Consensus       228 ~~~~~~~~~a~~aL~~L~~~~-~------~~~~i~~~g~v~~L~~ll  267 (372)
                      ....+.+..++..+-.+.... +      .|..+...|..+ ++..+
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l  209 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQEL  209 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHH
Confidence            655344444444443454433 2      334455666554 44445

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.22  E-value=2.6  Score=40.34  Aligned_cols=250  Identities=11%  Similarity=0.102  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh----cCCChhHHHHHHHHHhcCCCCcccccccc----c-cC
Q 017402          104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI----HSDGFTLQEKALSLLLNLSLDDDNKVGLV----A-EG  174 (372)
Q Consensus       104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~-~g  174 (372)
                      ..|..|...+..++....+.   +. ....+.+...+..    .+.+...++.++.++..++..........    . ..
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~---~~-~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~  451 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVL---VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHhcccc---ch-HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhh
Confidence            44556666677777644321   11 1122233333321    12344556666666665543221111111    1 12


Q ss_pred             ChHHHHH----HHhc---CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402          175 AVSRVVA----ALRF---GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF  247 (372)
Q Consensus       175 ~i~~lv~----~L~~---~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~  247 (372)
                      ..+.+..    .+..   ....++..+++++...+.... ....   ..+++.+++.|.+.+. .++..|+.+|..++..
T Consensus       452 ~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-~~~~---~~~~~~l~~~L~~~~~-~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQL---IELMPILATFLQTDEY-VVYTYAAITIEKILTI  526 (959)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHH---HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-HHHH---HHHHHHHHHHhCCCch-hHHHHHHHHHHHHHHh
Confidence            2333333    3333   245678888899988865322 1221   3689999999988766 8999999999998764


Q ss_pred             Cchh---------HHHHh--cCchHHHHHHHhhh---------HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHh
Q 017402          248 PENR---------KRVVS--CGAVPILMRLADAG---------LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLK  306 (372)
Q Consensus       248 ~~~~---------~~i~~--~g~v~~L~~ll~~~---------~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~  306 (372)
                      ....         ..+..  ...+..|+..+...         .+.++.++..+...-.. -....  ...++.|...+.
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~--~~i~~~l~~~~~  604 (959)
T d1wa5c_         527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVT  604 (959)
T ss_dssp             BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHH
T ss_pred             hcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3211         11110  01233444444221         23355555555432110 00111  113344444432


Q ss_pred             c-----CChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402          307 T-----GSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL  365 (372)
Q Consensus       307 ~-----~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l  365 (372)
                      .     .++........+|..+... +++....+ ...++|.+...++.........+..++..+
T Consensus       605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~  668 (959)
T d1wa5c_         605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (959)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            2     2334445555666665433 24443333 344678887877766555566666666544

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.078  Score=32.80  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             CCCccccCCcccCCCceecC----CchHhhHHHHHHHHh
Q 017402            6 PDDFKCPISLEIMSDPVILS----SGHTFDRASIQRWLD   40 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~Pv~~~----cgh~~c~~ci~~~~~   40 (372)
                      ...+.|.+|.+.+.|.-...    -+|.||-.|-...+.
T Consensus         6 ~~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           6 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CCceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence            34589999999999985443    379999999888775

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.065  Score=26.63  Aligned_cols=14  Identities=14%  Similarity=0.456  Sum_probs=10.1

Q ss_pred             CCccccCCcccCCC
Q 017402            7 DDFKCPISLEIMSD   20 (372)
Q Consensus         7 ~~~~C~ic~~~~~~   20 (372)
                      ..|.||||.+.|+.
T Consensus         2 kp~~cpic~qrfkr   15 (32)
T d2epqa1           2 KPYSCPVCGLRFKR   15 (32)
T ss_dssp             CSSEETTTTEECSC
T ss_pred             CCcccchHHHHhhc
Confidence            45778888887764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=0.72  Score=44.48  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC---ccc
Q 017402           90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD---DDN  166 (372)
Q Consensus        90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~---~~~  166 (372)
                      +.+.++|... .+++.|++|=..|..+.. +|         |.+..|++++.+.+.+..+|..|+-.|.|....   +..
T Consensus         5 ~~l~~ll~~s-~~~~~~k~Ae~~L~~~~~-~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           5 ETVAKFLAES-VIASTAKTSERNLRQLET-QD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHT-TSGGGHHHHHHHHHHHHT-ST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHC-CChHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            3566777654 577888888888888754 33         678888888885444567888888888775422   111


Q ss_pred             cc-ccc---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402          167 KV-GLV---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY  242 (372)
Q Consensus       167 ~~-~i~---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~  242 (372)
                      .. .+-   +...-..++..|.+.+..++...+.++..++..+-...    -.+.++.|+..+++++. .....++.+|.
T Consensus        74 ~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~----Wp~ll~~l~~~l~s~~~-~~~~~~L~~l~  148 (959)
T d1wa5c_          74 GNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR----WPTLLSDLASRLSNDDM-VTNKGVLTVAH  148 (959)
T ss_dssp             SCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHTTCCSSCT-THHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc----cHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence            11 111   12233556777777888999999999999987552211    14789999999988766 67777888888


Q ss_pred             hhcC
Q 017402          243 ALTS  246 (372)
Q Consensus       243 ~L~~  246 (372)
                      .++.
T Consensus       149 ~i~k  152 (959)
T d1wa5c_         149 SIFK  152 (959)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            7764

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=83.49  E-value=11  Score=31.23  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-----CCChhHHHHHHHHHhcCCCCccccccccccCCh
Q 017402          102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-----SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAV  176 (372)
Q Consensus       102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i  176 (372)
                      +.+.+.-++++|+|+-.  +         +.++.|..++...     .....++..|+.+|.+++..+...       +.
T Consensus       185 ~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~  246 (336)
T d1lsha1         185 KEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQ  246 (336)
T ss_dssp             CHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HH
T ss_pred             chHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HH
Confidence            56667778888888753  2         2467777777531     124678999999999987654321       23


Q ss_pred             HHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402          177 SRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP  248 (372)
Q Consensus       177 ~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~  248 (372)
                      +.+..++.+  .+.++|..|..+|...-  +       . ...+..+...+..+.+.++.......|.+++...
T Consensus       247 ~~l~~i~~n~~e~~EvRiaA~~~lm~t~--P-------~-~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         247 EIVLPIFLNVAIKSELRIRSCIVFFESK--P-------S-VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHTC--C-------C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcC--C-------C-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            456666655  47899988888876631  1       1 2456677777766555589999999999998754

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.45  E-value=2.6  Score=30.50  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHH
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTL  365 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l  365 (372)
                      ++..|.+-+.++++.++..|+.+|-.+..+ ++....++.+.+.+..|+.++..      .+..|++++..++..-
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W  121 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW  121 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHH
Confidence            566677778889999999999999998887 47888888888899999998852      4678999999998754

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.70  E-value=0.43  Score=30.45  Aligned_cols=35  Identities=14%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             CCCCCCccccCCcccCCCceecC---CchHhhHHHHHHH
Q 017402            3 TQFPDDFKCPISLEIMSDPVILS---SGHTFDRASIQRW   38 (372)
Q Consensus         3 ~~~~~~~~C~ic~~~~~~Pv~~~---cgh~~c~~ci~~~   38 (372)
                      +++..+-.|+|| +++.--..++   |+..|+..|+.+.
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            347778899999 6665555554   7888999999886

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.69  E-value=0.23  Score=24.10  Aligned_cols=16  Identities=19%  Similarity=0.445  Sum_probs=12.7

Q ss_pred             CCCccccCCcccCCCc
Q 017402            6 PDDFKCPISLEIMSDP   21 (372)
Q Consensus         6 ~~~~~C~ic~~~~~~P   21 (372)
                      ++-|+|.+|.+.|+..
T Consensus         2 eqvftcs~cqe~f~rr   17 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRR   17 (30)
T ss_dssp             CCCEECSSSCCEESSH
T ss_pred             cceEEeHHHHHHHHHH
Confidence            4568999999988764

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=2.1  Score=30.89  Aligned_cols=70  Identities=10%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402          297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS  366 (372)
Q Consensus       297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  366 (372)
                      ++..|.+-++++++.++..|+.+|-.+..+. +....++.+...+..|+.++..      .+..||+++..++....
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa  115 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            5667778888899999999999998888764 6788888888889999998863      47889999999887543