Citrus Sinensis ID: 017414
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMA1 | 530 | Pentatricopeptide repeat- | yes | no | 0.916 | 0.643 | 0.588 | 1e-120 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.766 | 0.533 | 0.475 | 9e-95 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.811 | 0.443 | 0.460 | 5e-94 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.911 | 0.546 | 0.461 | 1e-93 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.951 | 0.479 | 0.426 | 2e-90 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.814 | 0.387 | 0.445 | 7e-90 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.935 | 0.607 | 0.450 | 1e-88 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.790 | 0.455 | 0.430 | 3e-88 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.825 | 0.501 | 0.429 | 1e-87 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.900 | 0.452 | 0.468 | 5e-87 |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/343 (58%), Positives = 277/343 (80%), Gaps = 2/343 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
WN ++AGY KVG+++ AR+L E+M +N +SWT +I+GYA+ + +EAI +F+RM +E
Sbjct: 185 WNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME 244
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
NV+PDE+ +LA LSACA LG++ELGE I +Y++ G+N V LNNA+IDMYAKSG I KA
Sbjct: 245 NVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKA 304
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
L VFE + ++V+TWTT+IAGLA HG G EAL MF+RM +A V+PN++TFIAILSAC HV
Sbjct: 305 LDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHV 364
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G V+LG+R FN M+S+YGI P IE YGCMIDLLGRAG L+EA+++++ MPF+ANAAIWGS
Sbjct: 365 GWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGS 424
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LLAASN++ D+ELGE AL LIKLEP+NSGNY +L+N+Y+ LGRW+ES +R +M+ +GV
Sbjct: 425 LLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGV 484
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
KKM G S IEV RV++F++GD +HP +R+++IL +++ Q++
Sbjct: 485 KKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 234/324 (72%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN++++GYA++G + A+ LF LM +K ++SWT +I+GY + EA+ FR MQ+ +
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PDEI++++ L +CAQLG++ELG+WIH Y E+ G + NALI+MY+K G I +A+Q
Sbjct: 238 EPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F M+ K VI+W+TMI+G A HG A++ F+ M+RA+VKPN ITF+ +LSAC HVG+
Sbjct: 298 LFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGM 357
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+ G RYF++M+ Y IEPKIE YGC+ID+L RAG L+ A ++ + MP + ++ IWGSLL
Sbjct: 358 WQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLL 417
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++ G++++ A+ HL++LEP + GNY +L+NIYA LG+W + ++RK++R+ +KK
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHP 335
PG S IEV+ V EFV+GD S P
Sbjct: 478 TPGGSLIEVNNIVQEFVSGDNSKP 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 235/341 (68%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W TM++GYA+ G L+ +R LF+ M EK+V+ W +I G Q + +A+ LF+ MQ N
Sbjct: 326 WTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT 385
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
KPDEI M+ LSAC+QLGA+++G WIH YIE+Y L+ V L +L+DMYAK G I +AL
Sbjct: 386 KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALS 445
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF ++ ++ +T+T +I GLALHG A+ F+ M A + P+EITFI +LSACCH G+
Sbjct: 446 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
++ GR YF+ MKSR+ + P+++ Y M+DLLGRAG L+EA++L+ MP EA+AA+WG+LL
Sbjct: 506 IQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALL 565
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++G+VELGE A + L++L+P +SG Y +L +Y W ++ + R++M + GV+K
Sbjct: 566 FGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK 625
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+PGCS IEV+ V EF+ D S P+ +++Y L + M+
Sbjct: 626 IPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMR 666
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 235/347 (67%), Gaps = 8/347 (2%)
Query: 2 FTLSRLLYK--------FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 53
F L+ LL+ WN+++ GY K G ++ A LF M EKN ISWTT+I+GY Q
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225
Query: 54 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113
D EA+ LF MQ +V+PD +++ ALSACAQLGA+E G+WIH+Y+ + + L
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285
Query: 114 NALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173
LIDMYAK G++ +AL+VF+N+K KSV WT +I+G A HG GREA+ F M++ +K
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345
Query: 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233
PN ITF A+L+AC + GLVE G+ F M+ Y ++P IE YGC++DLLGRAG L EA++
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405
Query: 234 LLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293
++ MP + NA IWG+LL A I+ ++ELGE + LI ++P++ G Y +NI+A+ +
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKK 465
Query: 294 WNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 340
W+++ + R++M++ GV K+PGCS I + HEF+AGD SHP+ +++
Sbjct: 466 WDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 238/356 (66%), Gaps = 2/356 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N 70
W TM+ GYA D AR + M +K++++W LI+ Y Q +PNEA+ +F +Q++ N
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+K ++I +++ LSACAQ+GA+ELG WIH+YI+++G+ + +ALI MY+K G + K+
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF +++ + V W+ MI GLA+HG G EA+DMF +M+ A VKPN +TF + AC H G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV+ F+ M+S YGI P+ + Y C++D+LGR+GYL++A K + MP + ++WG+L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A I+ ++ L E A L++LEP N G + +LSNIYA LG+W ++RK MR G+K
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
K PGCS IE+ +HEF++GD +HP +++Y L ++ ++K + + E S VL+
Sbjct: 601 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK-SNGYEPEISQVLQ 655
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 154/346 (44%), Positives = 227/346 (65%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WNTM+ GYA+ G ++ A+ LF+ M +++ +SW +IAGY+Q EA+ LF +M+ E
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+ + + +ALS CA + A+ELG+ +H + + G T + NAL+ MY K G I +A
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+ M K +++W TMIAG + HG G AL F M+R +KP++ T +A+LSAC H GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ GR+YF M YG+ P + Y CM+DLLGRAG L++A L++ MPFE +AAIWG+LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AS ++G+ EL E A + +EP NSG Y +LSN+YA GRW + GK+R MRD GVKK
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 357
+PG S+IE+ + H F GD HP+ D ++ L +++ +MK A ++
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYV 691
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (837), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 228/355 (64%), Gaps = 7/355 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN- 70
WN++V YAK G +++AR LF+ M E+NVISW+ LI GY + EA+ LFR MQ+
Sbjct: 131 WNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190
Query: 71 ----VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126
V+P+E M LSAC +LGA+E G+W+H YI++Y + + L ALIDMYAK G +
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 127 GKALQVFENM-KNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIAILS 184
+A +VF + K V ++ MI LA++GL E +FS M + + PN +TF+ IL
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244
AC H GL+ G+ YF +M +GI P I+ YGCM+DL GR+G ++EAE + MP E +
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304
IWGSLL+ S + GD++ E AL+ LI+L+P NSG Y +LSN+YA GRW E IR M
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEM 430
Query: 305 RDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
G+ K+PGCSY+EV VHEFV GD S + +R+Y +L +I +++ A ++ +
Sbjct: 431 EVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTD 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 231/344 (67%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN M+ GY ++GD AR LF+ M +++V+SW T+I+GY+ +A+ +FR M+ +
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
++P+ + +++ L A ++LG++ELGEW+H Y E G+ L +ALIDMY+K G I KA+
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 329
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
VFE + ++VITW+ MI G A+HG +A+D F +M +A V+P+++ +I +L+AC H G
Sbjct: 330 HVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGG 389
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE GRRYF+ M S G+EP+IE YGCM+DLLGR+G L EAE+ + MP + + IW +L
Sbjct: 390 LVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKAL 449
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A + G+VE+G+ L+ + PH+SG Y LSN+YA G W+E ++R M++ ++
Sbjct: 450 LGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIR 509
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
K PGCS I++ +HEFV D SHP + +L +I+ +++ A
Sbjct: 510 KDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (828), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 232/342 (67%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
MV A+ GD+ AR LFE M E++ I+W +I+GYAQ+ + EA+ +F MQ+E VK
Sbjct: 178 TAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVK 237
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
+ +AM++ LSAC QLGA++ G W H+YIE+ + V L L+D+YAK G + KA++V
Sbjct: 238 VNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEV 297
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F M+ K+V TW++ + GLA++G G + L++FS M++ V PN +TF+++L C VG V
Sbjct: 298 FWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFV 357
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ G+R+F+ M++ +GIEP++E YGC++DL RAG L++A ++++MP + +AA+W SLL
Sbjct: 358 DEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLH 417
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
AS +Y ++ELG A + +++LE N G Y +LSNIYA W+ +R+ M+ GV+K
Sbjct: 418 ASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQ 477
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
PGCS +EV+ VHEF GD SHP + ++ + I+ +++ A
Sbjct: 478 PGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLA 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 220/337 (65%), Gaps = 2/337 (0%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K N ++ Y+K G+L A LFE + K+VISW TLI GY M+ EA+ LF+ M
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY--GLNTIVPLNNALIDMYAKSGKIG 127
P+++ ML+ L ACA LGA+++G WIH YI++ G+ L +LIDMYAK G I
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 128 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187
A QVF ++ +KS+ +W MI G A+HG + D+FSRM + ++P++ITF+ +LSAC
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIW 247
H G+++LGR F M Y + PK+E YGCMIDLLG +G +EAE+++ M E + IW
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541
Query: 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307
SLL A ++G+VELGE ++LIK+EP N G+Y +LSNIYA GRWNE K R ++ D
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601
Query: 308 GVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
G+KK+PGCS IE+ VHEF+ GD HP +Y +L
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| 225435834 | 576 | PREDICTED: pentatricopeptide repeat-cont | 0.846 | 0.546 | 0.739 | 1e-160 | |
| 147774372 | 576 | hypothetical protein VITISV_041201 [Viti | 0.846 | 0.546 | 0.736 | 1e-160 | |
| 224073108 | 508 | predicted protein [Populus trichocarpa] | 0.956 | 0.700 | 0.714 | 1e-148 | |
| 449452775 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.838 | 0.569 | 0.679 | 1e-141 | |
| 255564780 | 538 | pentatricopeptide repeat-containing prot | 0.838 | 0.579 | 0.662 | 1e-138 | |
| 357439099 | 526 | Pentatricopeptide repeat-containing prot | 0.924 | 0.653 | 0.680 | 1e-134 | |
| 356577724 | 549 | PREDICTED: pentatricopeptide repeat-cont | 0.908 | 0.615 | 0.657 | 1e-130 | |
| 242052493 | 506 | hypothetical protein SORBIDRAFT_03g01005 | 0.916 | 0.673 | 0.592 | 1e-123 | |
| 125525262 | 499 | hypothetical protein OsI_01257 [Oryza sa | 0.930 | 0.693 | 0.578 | 1e-121 | |
| 56783979 | 503 | pentatricopeptide (PPR) repeat-containin | 0.930 | 0.687 | 0.578 | 1e-121 |
| >gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/361 (73%), Positives = 315/361 (87%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
FWN MVAGYAKVGD++NAR LFE M E+NVISWT +IAGYAQMD+PNEAIT+FRRMQ+E
Sbjct: 207 FWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEE 266
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V+PDEIAMLAALSACA LGA+ELGEWIHNYI+++GL+ IVPLNNALIDMYAK GKI KAL
Sbjct: 267 VEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKAL 326
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF+NM++KSVITWT+MI GLALHGLGREAL+MFS MER R+KPNEITF+AILSACCHVG
Sbjct: 327 EVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVG 386
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE+GR YF M ++YGI+PKI+ YGCMIDLLGRAG+LQEA++L+R MPFEANA IWGSL
Sbjct: 387 LVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSL 446
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
LAA+ I+GD ELG+ ALQHLIK+EPHNSGNY +LSNIYA +WNE+G +RKVMRD GVK
Sbjct: 447 LAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVK 506
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370
KMPG S IEV+ RVHEFVAGD HP +R++++LCKIN Q K A ++Q E +LES+
Sbjct: 507 KMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYVQKEHVEMLESNKE 566
Query: 371 S 371
S
Sbjct: 567 S 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 266/361 (73%), Positives = 315/361 (87%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
FWN MVAGYAKVGD++NAR LFE M E+NVISWT +IAGYAQMD+PNEAIT+FRRMQ+E
Sbjct: 207 FWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEE 266
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V+PDEIAMLAALSACA LGA+ELGEWIHNYI+++GL+ IVPLNNALIDMYAK GKI KAL
Sbjct: 267 VEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKAL 326
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF+NM++KSVITWT+MI GLALHGLGREAL+MFS MER R+KPNEITF+AILSACCHVG
Sbjct: 327 EVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVG 386
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE+GR YF M ++YGI+PKI+ YGCMIDLLGRAG+LQEA++L+R MPFEANA IWGSL
Sbjct: 387 LVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSL 446
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
LAA+ I+GD ELG+ ALQHLIK+EPHNSGNY +LSNIYA +WNE+G +RKVMRD GVK
Sbjct: 447 LAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVK 506
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370
KMPG S IEV+ RVHEFVAGD HP +R++++LCKJN Q K A ++Q E +LES+
Sbjct: 507 KMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYVQKEHVEMLESNKE 566
Query: 371 S 371
S
Sbjct: 567 S 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa] gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/357 (71%), Positives = 297/357 (83%), Gaps = 1/357 (0%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN M+ GYAK GDL NAR LFE M ++NVISWT LI GYAQ ++P++AI LFRRMQ+EN
Sbjct: 150 LWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLEN 209
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL-NTIVPLNNALIDMYAKSGKIGKA 129
V+PDEIAML AL+ACA+LGA+ELGEWI +YI++ GL T +PLNNALIDMYAKSG I A
Sbjct: 210 VEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSA 269
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
LQVFENM +K++ITWTTMIAGLALHGLG EAL+MFSRMERARVKPN+ITFIAILSAC HV
Sbjct: 270 LQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHV 329
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
GLV+ GR YFN M SRYGIEPKIE YGCMIDLLGRAG+L+EA+ LL +MPFE NA IWGS
Sbjct: 330 GLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGS 389
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LLAA N +GD ELGE ALQHL++LEP NSGNYA+LSNIYA GRWNES +RKVM D GV
Sbjct: 390 LLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGV 449
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
KKMPG S IEV+ RVHEF+AG+ SH FDR+ ++L KIN Q+ ++H + E +LE
Sbjct: 450 KKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVLSKINRQLGLSQHFEKESGALLE 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cucumis sativus] gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/356 (67%), Positives = 289/356 (81%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN MVAGY KVG+L +AR +F M ++NVISWTTLIAGYAQ ++P+EAI LFR+MQ+E
Sbjct: 190 LWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEE 249
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V+PDEIAMLA LSACA LGA+ELGEWIHNYIE++GL IV L NALIDMYAKSG I +AL
Sbjct: 250 VEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRAL 309
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VFENMK KSVITW+T+IA LALHGLG EA+DMF RME+A+V+PNE+TF+AILSAC HVG
Sbjct: 310 EVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVG 369
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
+V++GR YF+ M+S Y IEPKIE YGCMIDLL RAGYLQEA+KLL MPFEANA IWGSL
Sbjct: 370 MVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSL 429
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
LAASN + D EL + AL+HL KLEP NSGNY +LSN YA LG+WNESG +RK+MR+ GVK
Sbjct: 430 LAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVK 489
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
K PG S IE++ V+EF+AGD S +Y +LCKI Q+K A Q E+S L+
Sbjct: 490 KAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKMAGSYQEEWSKFLD 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/356 (66%), Positives = 298/356 (83%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN M+ YAK+ D+ NA+ LF+ M ++N+ISWT LI+GYA +++P++AI +FR MQ++N
Sbjct: 179 LWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQN 238
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V PDEI +LA LSACAQLGA+ELGEWI NYI+ +GL+ VPL+NALIDMYAKSG I +AL
Sbjct: 239 VVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRAL 298
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+FE+MK+K+++TWTTMIAGLALHGLG +AL+MFSRMER RVKPNEITFIA+LSAC HVG
Sbjct: 299 LIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVG 358
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV+L R +F M+SRY I+PKIE YGCMIDLLGRAGYLQEA++LL++MPFE NAAIWGSL
Sbjct: 359 LVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSL 418
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
LAAS +GD LGE L+HLI+LEP+NSGNYA+LSNIYA LGRW S +RK+MRD GVK
Sbjct: 419 LAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVK 478
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
K+PG S+IEV+ RV+EF+AG+TSHP FD +Y+++ KIN Q + +E L+ E +LE
Sbjct: 479 KIPGGSFIEVNNRVNEFIAGETSHPQFDEIYEVIYKINEQSRLSESLEKECFELLE 534
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/347 (68%), Positives = 282/347 (81%), Gaps = 3/347 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
N M+ Y KVGD++NAR LF+ M E K+V SWT +I+GY Q PNEAI LFRRMQ+EN
Sbjct: 180 NAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLEN 239
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
VKPDEIA+LA LSACA LGA+ LGEWIHNYIE++ L+ IVPL N+LIDMYAKSG I KAL
Sbjct: 240 VKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKAL 299
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIAILSACCHV 189
++FENMK+K++ITWTTMIAGLALHGLG+EAL +FS ME+ RVKPNE+TFIAILSAC HV
Sbjct: 300 ELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHV 359
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
GLVELGR YF M+SRYGIEPKIE YGCMIDLLGRAG+LQEA++++ RMPFEANAAIWGS
Sbjct: 360 GLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGS 419
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LLAAS GD EL E AL+HL LEP + GNY++LSN YA LGRWNES +RKVM+D GV
Sbjct: 420 LLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRKVMQDAGV 479
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 356
+K+PG S+IEV+ V+EF+AGD F +Y +L ++GQ+K H
Sbjct: 480 EKVPGVSFIEVNNIVYEFIAGDKLSIYFVDIYDVLHSLDGQIKIEIH 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/345 (65%), Positives = 277/345 (80%), Gaps = 7/345 (2%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKN--VISWTTLIAGYAQMDQPNEAITLFRRMQV 68
WN M+AGYAKVG+++NAR LFE M EK+ V+SWTTLI+GY Q PNEAITLFR M +
Sbjct: 195 LWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLL 254
Query: 69 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKI 126
+NV+PDEIA+LA LSACA LGA++LGEWIHNYIE++ L VPL N+LIDMYAKSG I
Sbjct: 255 QNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDI 314
Query: 127 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186
KA Q+F+NMK+K++ITWTT+I+GLALHG G+EALD+FS ME+ARVKPNE+T IA+LSAC
Sbjct: 315 SKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSAC 374
Query: 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAI 246
HVGLVELGR F M+S+YGIEPKIE YGCMIDLLGRAGYLQEA +L+R MP EANAA+
Sbjct: 375 SHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAAV 434
Query: 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306
WGSLL+ASN YGD L AL+HL LEPHN GNY++LSN YA LG W E+ +RKVMRD
Sbjct: 435 WGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTYAALGWWKEAAMVRKVMRD 494
Query: 307 MGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQM 351
+K+PG S++E++ RV+EF+AGD + F +L INGQ+
Sbjct: 495 TCAEKVPGVSFVELNNRVYEFIAGDKLNICF---LDVLQSINGQL 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor] gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/341 (59%), Positives = 267/341 (78%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+AGY K GDL +AR LF+ M E+NV+SWTT+I GYAQM +P EA+ +FRRMQVE +
Sbjct: 148 WNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGI 207
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PD +A+L+ LSAC LGAV+LGEW+H ++ + GL +PL N++IDMY K G I KA++
Sbjct: 208 EPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVE 267
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VFE M+ KSV+TWTT+IAG ALHGLG +A++MF RMER + PN++TF+AILSAC HVGL
Sbjct: 268 VFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGL 327
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+LGR YFNIM S+Y I+P++E YGCM+DLLGRAG L+EA+ L++ MP +ANAAIWG+LL
Sbjct: 328 TDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALL 387
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AAS +GD +LGE AL HLI+LEP NSGNY +LSNI+A RW++ K+RK M++ G++
Sbjct: 388 AASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRN 447
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+PG S IEV VHEF + D SHP ++ ++LC+IN MK
Sbjct: 448 VPGASSIEVDGMVHEFTSRDGSHPFLHKICEVLCEINTNMK 488
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/346 (57%), Positives = 258/346 (74%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+ GY K GDL AR LF++M +NV+SWT +I YAQM QP EAI +FRRMQVE +
Sbjct: 141 WNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGI 200
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PD +A+L+ LSAC LG V+LGEW+H ++ + GL +PL NA+IDMY K G + KAL+
Sbjct: 201 EPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALE 260
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VFE M+ KS++TWTTMIAG ALHGLG EA+++F RME+ V PN+ITF+A+LS C HVGL
Sbjct: 261 VFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGL 320
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+LGR YF M S+Y I+P++E YGCMIDLLGRAG L EA L++ MPF+ANAAIWG+LL
Sbjct: 321 TDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALL 380
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AA+ +GD ELGE AL HLI+LEPHNSGNY +LSNIYA RW+ ++R MRD G++
Sbjct: 381 AAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRN 440
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 357
+PG S I+V VHEF + D SHP ++ ++LC IN +K H+
Sbjct: 441 VPGASSIDVDGMVHEFTSRDGSHPSLHKIREVLCAINSNIKSVGHI 486
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/346 (57%), Positives = 258/346 (74%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+ GY K GDL AR LF++M +NV+SWT +I YAQM QP EAI +FRRMQVE +
Sbjct: 145 WNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGI 204
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PD +A+L+ LSAC LG V+LGEW+H ++ + GL +PL NA+IDMY K G + KAL+
Sbjct: 205 EPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALE 264
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VFE M+ KS++TWTTMIAG ALHGLG EA+++F RME+ V PN+ITF+A+LS C HVGL
Sbjct: 265 VFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGL 324
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+LGR YF M S+Y I+P++E YGCMIDLLGRAG L EA L++ MPF+ANAAIWG+LL
Sbjct: 325 TDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALL 384
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AA+ +GD ELGE AL HLI+LEPHNSGNY +LSNIYA RW+ ++R MRD G++
Sbjct: 385 AAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRN 444
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 357
+PG S I+V VHEF + D SHP ++ ++LC IN +K H+
Sbjct: 445 VPGASSIDVDGMVHEFTSRDGSHPSLHKIREVLCAINSNIKSVGHI 490
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.916 | 0.643 | 0.588 | 1.3e-109 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.895 | 0.623 | 0.465 | 1.6e-86 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.916 | 0.500 | 0.460 | 3.3e-86 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.884 | 0.530 | 0.474 | 4.3e-86 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.951 | 0.479 | 0.426 | 9.1e-84 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.900 | 0.452 | 0.468 | 2.4e-83 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.956 | 0.455 | 0.438 | 5e-83 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.922 | 0.530 | 0.431 | 6.5e-83 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.930 | 0.603 | 0.453 | 2e-81 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.913 | 0.555 | 0.432 | 2.2e-80 |
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 202/343 (58%), Positives = 277/343 (80%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
WN ++AGY KVG+++ AR+L E+M +N +SWT +I+GYA+ + +EAI +F+RM +E
Sbjct: 185 WNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME 244
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
NV+PDE+ +LA LSACA LG++ELGE I +Y++ G+N V LNNA+IDMYAKSG I KA
Sbjct: 245 NVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKA 304
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
L VFE + ++V+TWTT+IAGLA HG G EAL MF+RM +A V+PN++TFIAILSAC HV
Sbjct: 305 LDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHV 364
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G V+LG+R FN M+S+YGI P IE YGCMIDLLGRAG L+EA+++++ MPF+ANAAIWGS
Sbjct: 365 GWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGS 424
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LLAASN++ D+ELGE AL LIKLEP+NSGNY +L+N+Y+ LGRW+ES +R +M+ +GV
Sbjct: 425 LLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGV 484
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
KKM G S IEV RV++F++GD +HP +R+++IL +++ Q++
Sbjct: 485 KKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 155/333 (46%), Positives = 238/333 (71%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN++++GYA++G + A+ LF LM +K ++SWT +I+GY + EA+ FR MQ+ +
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PDEI++++ L +CAQLG++ELG+WIH Y E+ G + NALI+MY+K G I +A+Q
Sbjct: 238 EPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F M+ K VI+W+TMI+G A HG A++ F+ M+RA+VKPN ITF+ +LSAC HVG+
Sbjct: 298 LFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGM 357
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+ G RYF++M+ Y IEPKIE YGC+ID+L RAG L+ A ++ + MP + ++ IWGSLL
Sbjct: 358 WQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLL 417
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++ G++++ A+ HL++LEP + GNY +L+NIYA LG+W + ++RK++R+ +KK
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
PG S IEV+ V EFV+GD S P + + +L
Sbjct: 478 TPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVL 510
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 157/341 (46%), Positives = 235/341 (68%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W TM++GYA+ G L+ +R LF+ M EK+V+ W +I G Q + +A+ LF+ MQ N
Sbjct: 326 WTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT 385
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
KPDEI M+ LSAC+QLGA+++G WIH YIE+Y L+ V L +L+DMYAK G I +AL
Sbjct: 386 KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALS 445
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF ++ ++ +T+T +I GLALHG A+ F+ M A + P+EITFI +LSACCH G+
Sbjct: 446 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
++ GR YF+ MKSR+ + P+++ Y M+DLLGRAG L+EA++L+ MP EA+AA+WG+LL
Sbjct: 506 IQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALL 565
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++G+VELGE A + L++L+P +SG Y +L +Y W ++ + R++M + GV+K
Sbjct: 566 FGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK 625
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+PGCS IEV+ V EF+ D S P+ +++Y L + M+
Sbjct: 626 IPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMR 666
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 156/329 (47%), Positives = 229/329 (69%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN+++ GY K G ++ A LF M EKN ISWTT+I+GY Q D EA+ LF MQ +V
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PD +++ ALSACAQLGA+E G+WIH+Y+ + + L LIDMYAK G++ +AL+
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF+N+K KSV WT +I+G A HG GREA+ F M++ +KPN ITF A+L+AC + GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
VE G+ F M+ Y ++P IE YGC++DLLGRAG L EA++ ++ MP + NA IWG+LL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
A I+ ++ELGE + LI ++P++ G Y +NI+A+ +W+++ + R++M++ GV K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRL 340
+PGCS I + HEF+AGD SHP+ +++
Sbjct: 484 VPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 152/356 (42%), Positives = 238/356 (66%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N 70
W TM+ GYA D AR + M +K++++W LI+ Y Q +PNEA+ +F +Q++ N
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+K ++I +++ LSACAQ+GA+ELG WIH+YI+++G+ + +ALI MY+K G + K+
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF +++ + V W+ MI GLA+HG G EA+DMF +M+ A VKPN +TF + AC H G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV+ F+ M+S YGI P+ + Y C++D+LGR+GYL++A K + MP + ++WG+L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A I+ ++ L E A L++LEP N G + +LSNIYA LG+W ++RK MR G+K
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
K PGCS IE+ +HEF++GD +HP +++Y L ++ ++K + + E S VL+
Sbjct: 601 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK-SNGYEPEISQVLQ 655
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 158/337 (46%), Positives = 220/337 (65%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K N ++ Y+K G+L A LFE + K+VISW TLI GY M+ EA+ LF+ M
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY--GLNTIVPLNNALIDMYAKSGKIG 127
P+++ ML+ L ACA LGA+++G WIH YI++ G+ L +LIDMYAK G I
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 128 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187
A QVF ++ +KS+ +W MI G A+HG + D+FSRM + ++P++ITF+ +LSAC
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIW 247
H G+++LGR F M Y + PK+E YGCMIDLLG +G +EAE+++ M E + IW
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541
Query: 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307
SLL A ++G+VELGE ++LIK+EP N G+Y +LSNIYA GRWNE K R ++ D
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601
Query: 308 GVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
G+KK+PGCS IE+ VHEF+ GD HP +Y +L
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 157/358 (43%), Positives = 232/358 (64%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WNTM+ GYA+ G ++ A+ LF+ M +++ +SW +IAGY+Q EA+ LF +M+ E
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+ + + +ALS CA + A+ELG+ +H + + G T + NAL+ MY K G I +A
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+ M K +++W TMIAG + HG G AL F M+R +KP++ T +A+LSAC H GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ GR+YF M YG+ P + Y CM+DLLGRAG L++A L++ MPFE +AAIWG+LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AS ++G+ EL E A + +EP NSG Y +LSN+YA GRW + GK+R MRD GVKK
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDV 369
+PG S+IE+ + H F GD HP+ D ++ L +++ +MK A ++ + V+ DV
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSK--TSVVLHDV 701
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 148/343 (43%), Positives = 231/343 (67%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+ GY ++GD AR LF+ M +++V+SW T+I+GY+ +A+ +FR M+ ++
Sbjct: 211 WNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDI 270
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+P+ + +++ L A ++LG++ELGEW+H Y E G+ L +ALIDMY+K G I KA+
Sbjct: 271 RPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIH 330
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VFE + ++VITW+ MI G A+HG +A+D F +M +A V+P+++ +I +L+AC H GL
Sbjct: 331 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
VE GRRYF+ M S G+EP+IE YGCM+DLLGR+G L EAE+ + MP + + IW +LL
Sbjct: 391 VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
A + G+VE+G+ L+ + PH+SG Y LSN+YA G W+E ++R M++ ++K
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRK 510
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
PGCS I++ +HEFV D SHP + +L +I+ +++ A
Sbjct: 511 DPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 160/353 (45%), Positives = 227/353 (64%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN- 70
WN++V YAK G +++AR LF+ M E+NVISW+ LI GY + EA+ LFR MQ+
Sbjct: 131 WNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190
Query: 71 ----VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126
V+P+E M LSAC +LGA+E G+W+H YI++Y + + L ALIDMYAK G +
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 127 GKALQVFENM-KNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIAILS 184
+A +VF + K V ++ MI LA++GL E +FS M + + PN +TF+ IL
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244
AC H GL+ G+ YF +M +GI P I+ YGCM+DL GR+G ++EAE + MP E +
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304
IWGSLL+ S + GD++ E AL+ LI+L+P NSG Y +LSN+YA GRW E IR M
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEM 430
Query: 305 RDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 357
G+ K+PGCSY+EV VHEFV GD S + +R+Y +L +I +++ A ++
Sbjct: 431 EVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYV 483
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 147/340 (43%), Positives = 232/340 (68%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
MV A+ GD+ AR LFE M E++ I+W +I+GYAQ+ + EA+ +F MQ+E VK +
Sbjct: 180 MVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVN 239
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
+AM++ LSAC QLGA++ G W H+YIE+ + V L L+D+YAK G + KA++VF
Sbjct: 240 GVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFW 299
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
M+ K+V TW++ + GLA++G G + L++FS M++ V PN +TF+++L C VG V+
Sbjct: 300 GMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDE 359
Query: 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAAS 254
G+R+F+ M++ +GIEP++E YGC++DL RAG L++A ++++MP + +AA+W SLL AS
Sbjct: 360 GQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHAS 419
Query: 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314
+Y ++ELG A + +++LE N G Y +LSNIYA W+ +R+ M+ GV+K PG
Sbjct: 420 RMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPG 479
Query: 315 CSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
CS +EV+ VHEF GD SHP + ++ + I+ +++ A
Sbjct: 480 CSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLA 519
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMA1 | PP433_ARATH | No assigned EC number | 0.5889 | 0.9166 | 0.6433 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 372 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-97 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-85 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-48 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (787), Expect = 4e-97
Identities = 135/340 (39%), Positives = 215/340 (63%), Gaps = 2/340 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ Y+K ++ A +F + EK+VISWT++IAG ++ EA+ FR+M + +K
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P+ + ++AALSACA++GA+ G+ IH ++ + G+ L NAL+D+Y + G++ A
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F N K V++W ++ G HG G A+++F+RM + V P+E+TFI++L AC G+V
Sbjct: 547 F-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
G YF+ M+ +Y I P ++ Y C++DLLGRAG L EA + +MP + A+WG+LL
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
A I+ VELGE A QH+ +L+P++ G Y +L N+YA G+W+E ++RK MR+ G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
PGCS++EV +VH F+ D SHP + +L +MK
Sbjct: 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 2e-85
Identities = 120/326 (36%), Positives = 186/326 (57%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78
Y+K GD+ +AR +F+ M EK ++W +++AGYA EA+ L+ M+ V D+
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
+ ++L +E + H + + G + N AL+D+Y+K G++ A VF+ M
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198
K++I+W +IAG HG G +A++MF RM V PN +TF+A+LSAC + GL E G
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
F M + I+P+ Y CMI+LLGR G L EA ++RR PF+ +W +LL A I+
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508
Query: 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYI 318
++ELG A + L + P NY +L N+Y GR E+ K+ + ++ G+ P C++I
Sbjct: 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568
Query: 319 EVSKRVHEFVAGDTSHPDFDRLYQIL 344
EV K+ H F +GD HP +YQ L
Sbjct: 569 EVKKQDHSFFSGDRLHPQSREIYQKL 594
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 4e-48
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
N+++ Y +G A +F M K+ +SWT +I+GY + P++A+ + M+ +N
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V PDEI + + LSACA LG +++G +H E+ GL + V + NALI+MY+K I KAL
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF N+ K VI+WT++IAGL L+ EAL F +M +KPN +T IA LSAC +G
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIG 503
Query: 191 LVELGR 196
+ G+
Sbjct: 504 ALMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-41
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 10/244 (4%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ Y K GD+ +AR +F+ M ++ ISW +I+GY + + E + LF M+ +V
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD + + + +SAC LG LG +H Y+ + G V + N+LI MY G G+A +V
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F M+ K ++WT MI+G +GL +AL+ ++ ME+ V P+EIT ++LSAC +G +
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 193 ELGRRYFNIMKSRYGIEPKIEQY----GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
++G + + Y +I++ + + +A ++ +P E + W
Sbjct: 406 DVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWT 459
Query: 249 SLLA 252
S++A
Sbjct: 460 SIIA 463
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-37
Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 5/257 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
N ++ + K G L +AR LF+ M E+N+ SW T+I G EA LFR M +
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+ + L A A LG+ G+ +H + + G+ ++ ALIDMY+K G I A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF+ M K+ + W +M+AG ALHG EAL ++ M + V ++ TF ++ + L
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+E ++ + R G I ++DL + G +++A + RMP + N W +L+
Sbjct: 341 LEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALI 398
Query: 252 AASNIYGDVELGECALQ 268
A YG+ G A++
Sbjct: 399 AG---YGNHGRGTKAVE 412
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 7e-34
Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 2/250 (0%)
Query: 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL 62
+ L + N M++ + + G+L +A +F M E+++ SW L+ GYA+ +EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 63 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122
+ RM V+PD L C + + G +H ++ ++G V + NALI MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 123 SGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182
G + A VF+ M + I+W MI+G +G E L++F M V P+ +T ++
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 242
+SAC +G LGR + G + +I + G EAEK+ RM +
Sbjct: 295 ISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK- 352
Query: 243 NAAIWGSLLA 252
+A W ++++
Sbjct: 353 DAVSWTAMIS 362
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-20
Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 48/288 (16%)
Query: 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117
+A+ L MQ V DE A +A C AVE G + + + V L NA++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 118 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI 177
M+ + G++ A VF M + + +W ++ G A G EAL ++ RM A V+P+
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 178 TFIAILSACCHVGLVELGR-RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236
TF +L C G+ +L R R + R+G E ++ +I + + G + A +
Sbjct: 189 TFPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 237 RMP----FEANAAIWG------------------------------SLLAASNIYGDVEL 262
RMP NA I G S+++A + GD L
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 263 GECALQHLIK------LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304
G +++K + NS L +Y LG W E+ K+ M
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 4e-20
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 42/227 (18%)
Query: 13 NT-MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
NT +V Y+K G + +AR +F+ M KN+ISW LIAGY + +A+ +F RM E V
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
P+ + LA LSAC G E G W +
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQG-W----------------------------------E 447
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREAL--DMFSRMERARVKPNEITFIAILSACCHV 189
+F++M I M + LGRE L + ++ + RA KP + A+L+AC
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 190 GLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLL 235
+ELGR + YG+ P K+ Y +++L +G EA K++
Sbjct: 508 KNLELGRL---AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Query: 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK 139
A + AC L ++ + ++ ++E G + N ++ M+ K G + A ++F+ M +
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199
++ +W T+I GL G REA +F M TF+ +L A +G G++
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ-L 246
Query: 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 259
+ + G+ +ID+ + G +++A + MP E W S+LA ++G
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGY 305
Query: 260 VELGECALQHL 270
E C +
Sbjct: 306 SEEALCLYYEM 316
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 62/250 (24%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELM-------TEKNVISWTTLIAGYAQMDQPNEAITL 62
K + T+++ AK G ++ A+FE+ E NV ++ LI G A+ Q +A
Sbjct: 473 KLYTTLISTCAKSGKVD---AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 63 FRRMQVENVKPDEIAMLAALSACAQLGAV--------ELGEWIH----NYIEQYGLNTIV 110
+ M+ +NVKPD + A +SAC Q GAV E+ H ++I G
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVG----- 583
Query: 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE-----ALDMFS 165
AL+ A +G++ +A +V++ + + I T + +A++ ++ AL ++
Sbjct: 584 ----ALMKACANAGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225
M++ VKP+E+ F A++ H G ++ + + GI+ Y L+G
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYS---SLMGAC 694
Query: 226 GYLQEAEKLL 235
+ +K L
Sbjct: 695 SNAKNWKKAL 704
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 7e-11
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188
V+T+ T+I G G EAL +F+ M++ +KPN T+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 14/262 (5%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
++ G A+ G + A + +M KNV + + LI+ Q + A + M+ E
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 71 --VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128
+ PD I + A + ACA G V+ + ++ I +Y + + ++ ++ G
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 129 ALQVFENMKNKSVITWTTMIAGL---ALH-GLGREALDMFSRMERARVKPNEITFIAILS 184
AL ++++MK K V + L A H G +A ++ + +K +++ +++
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL---RRMPFE 241
AC + + + +KS + P + +I L L +A ++L +R+
Sbjct: 693 ACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 242 ANAAIWGSLLAASNIYGDVELG 263
N + LL AS D ++G
Sbjct: 752 PNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137
ML +S CA ++ + +++ GL L LI AKSGK+ +VF M
Sbjct: 442 ML--MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 138 NK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193
N +V T+ +I G A G +A + M VKP+ + F A++SAC G V+
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 194 LGRRYFNI---MKSR-YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238
R F++ MK+ + I+P G ++ AG + A+++ + +
Sbjct: 560 ---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-07
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI 76
+V+++ TLI GY + + EA+ LF M+ +KP+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 114 NALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLA 152
N LID Y K GK+ +AL++F MK + +V T++ +I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQ 52
+NT++ GY K G + A LF M ++ NV +++ LI G +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE 176
+T+ T+I GL G EAL++F M+ ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75
+++ TLI G + + EA+ LF+ M+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 142 ITWTTMIAGLALHGLGREALDMFSRMERARV 172
+T+ ++I+G G EAL++F M+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220
P+ +T+ ++ C G VE + FN MK R GI+P + Y +ID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 4e-04
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
+++ +LI+GY + + EA+ LF+ M+ + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 32/126 (25%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN ++ GY G + + A+ LF RM V
Sbjct: 557 WNILLTGYVAHG-------------------------------KGSMAVELFNRMVESGV 585
Query: 72 KPDEIAMLAALSACAQLGAVELG-EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
PDE+ ++ L AC++ G V G E+ H+ E+Y + + ++D+ ++GK+ +A
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 131 QVFENM 136
M
Sbjct: 646 NFINKM 651
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNV 40
+N++++GY K G L A LF+ M EK V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 125 KIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME-RARVKPNEITFIAIL 183
K ++ + KS ++ + I L G REAL++F +E T+ A++
Sbjct: 71 SESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALV 130
Query: 184 SACCHVGLVELG--RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241
AC + L + + + ++S G EP ++ + + G L +A +L MP E
Sbjct: 131 EAC--IALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E 186
Query: 242 ANAAIWGSLL 251
N A WG+++
Sbjct: 187 RNLASWGTII 196
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 114 NALIDMYAKSGKIGKALQVFENMKNKSV 141
N+LI Y K+GK+ +AL++F+ MK K V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.003
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73
+ ++ L+ A+ P+ A+ + M+ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.43 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.89 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.82 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.59 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.48 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.39 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.03 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.89 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.69 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.65 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.48 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.27 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.04 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.96 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.75 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.57 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.52 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.02 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.84 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.51 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.01 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.96 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.96 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.58 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.14 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.67 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.45 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.38 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.9 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 92.77 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.49 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.34 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.19 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.05 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.37 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.11 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.86 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.56 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.4 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.03 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.77 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.57 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.52 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.21 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.99 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.98 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.94 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.63 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.47 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.31 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.24 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.22 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.8 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.34 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.14 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 86.1 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.73 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.72 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.16 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.96 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 84.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.83 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.42 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.42 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.98 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 83.55 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.09 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.93 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.57 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.5 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.16 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.95 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 81.74 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 81.63 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.59 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.92 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.64 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.25 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=469.34 Aligned_cols=365 Identities=33% Similarity=0.589 Sum_probs=358.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.+|..+||+++++|++.|++++|.++|+.|.++|..+||+++.+|++.|++++|+++|++|.+.|+.||..||++++.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|++++|.+++..|.+.|++|+..+|+.|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++++..|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEE
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVH 325 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~ 325 (372)
+|+.|+.+|...|+++.|..+++++.++.|.+..+|..|+.+|.+.|+|++|.++++.|++.|+.+.|+++|+++.+.+|
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCCC
Q 017414 326 EFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370 (372)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~~ 370 (372)
.|+.++.+||+.+++++.+.++...|++.|+.||...++++++++
T Consensus 576 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 576 SFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred EEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 999999999999999999999999999999999999999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=447.50 Aligned_cols=362 Identities=38% Similarity=0.710 Sum_probs=352.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
..||..+||+++++|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
|++.|+.+.+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (372)
++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|+++||.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~ 657 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999999999999977799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRV 324 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~ 324 (372)
.+|++|+.+|...|+.+.++...+++.++.|+++..|..|...|...|+|++|.++.+.|++.|+++.|+++||++++.+
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCC
Q 017414 325 HEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDV 369 (372)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~ 369 (372)
|.|+.++.+||+.++++..++++...|++.|+.||....+ +++|
T Consensus 738 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~ 781 (857)
T PLN03077 738 HAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE 781 (857)
T ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH
Confidence 9999999999999999999999999999999999988766 4443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=399.68 Aligned_cols=347 Identities=18% Similarity=0.235 Sum_probs=319.0
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
+..||..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3458999999999999999999999999999975 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc------cCCcchHHHHHHHHHh
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK------NKSVITWTTMIAGLAL 153 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 153 (372)
.++.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 4788999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.++++|++.|++++|.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 999999999999999999999999999
Q ss_pred HHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 234 LLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
++++| +..||..+|+.+|.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|.+.|++++|.++|++|...|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999 788999999999999999999999999999998754 34778999999999999999999999999999999
Q ss_pred ccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.|+..++.. ++.++...++.+++...+ +.|.+.|+.||..++
T Consensus 751 ~Pd~~Ty~s--------LL~a~~k~G~le~A~~l~----~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 751 CPNTITYSI--------LLVASERKDDADVGLDLL----SQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCCHHHHHH--------HHHHHHHCCCHHHHHHHH----HHHHHcCCCCCHHHH
Confidence 987765543 244566677777777554 789999999998655
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=390.93 Aligned_cols=347 Identities=17% Similarity=0.261 Sum_probs=325.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
.+++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCcchHHHHHHHHHhcCChhHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999996 47899999999999999999999
Q ss_pred HHHHHHHHH--cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 161 LDMFSRMER--ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 161 ~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999986 678999999999999999999999999999999976 99999999999999999999999999999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 017414 239 ---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 239 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 314 (372)
++.||..+|+.++.+|.+.|++++|.++++.|.+.+ +++..+|+.|+.+|.+.|++++|.++|++|...|+.|+..
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 789999999999999999999999999999999966 4578899999999999999999999999999999988764
Q ss_pred eeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccc
Q 017414 315 CSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGV 364 (372)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~ 364 (372)
... .++.++...++.+++.+.+ +.|++.|+.||..++.
T Consensus 721 tyN--------~LI~gy~k~G~~eeAlelf----~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 721 TMN--------ALITALCEGNQLPKALEVL----SEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHH--------HHHHHHHHCCCHHHHHHHH----HHHHHcCCCCCHHHHH
Confidence 432 3466777888999998766 7799999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=381.79 Aligned_cols=341 Identities=25% Similarity=0.350 Sum_probs=315.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.||..+||.++.+|++.|++++|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|..+.+.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|+.|+++|++.|++++|.++|++|. +||..
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~ 392 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLI 392 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999966 999999999999999999999999999999996 58999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHh-CCCccCCceeEEEeCCE
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRD-MGVKKMPGCSYIEVSKR 323 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~ 323 (372)
+|+.+|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~------ 466 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA------ 466 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH------
Confidence 99999999999999999999999999855 34778999999999999999999999999975 68887654433
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 324 VHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.++.+....+..+++.+.+ ++.++.||..++
T Consensus 467 --~li~~l~r~G~~~eA~~~~-------~~~~~~p~~~~~ 497 (697)
T PLN03081 467 --CMIELLGREGLLDEAYAMI-------RRAPFKPTVNMW 497 (697)
T ss_pred --hHHHHHHhcCCHHHHHHHH-------HHCCCCCCHHHH
Confidence 2344555677777777554 334667776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=389.61 Aligned_cols=355 Identities=24% Similarity=0.406 Sum_probs=321.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.||+.+||+++.+|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|++++|+++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+++|++.|++++|.++|++|. ++|..
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~v 456 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVI 456 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999966 999999999999999999999999999999996 57999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCC---
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSK--- 322 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~--- 322 (372)
+|+.++.+|...|+.++|..+|++|.+..+++..+|..++.+|.+.|+.+.+.+++..|...|+.++.......+..
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999998755557778888888888888888888888888887776554322111100
Q ss_pred -------------------EEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccc
Q 017414 323 -------------------RVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366 (372)
Q Consensus 323 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~ 366 (372)
....++.++..+++.+++.+.+ +.|.+.|+.||.+++..-
T Consensus 537 ~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf----~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF----NRMVESGVNPDEVTFISL 595 (857)
T ss_pred cCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCcccHHHH
Confidence 0012355566788888887655 779999999999998543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=187.10 Aligned_cols=298 Identities=14% Similarity=0.075 Sum_probs=248.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccC
Q 017414 16 VAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLG 89 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~ 89 (372)
...+...|++++|+..|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456788999999999999986 3 456889999999999999999999999987542222 246788899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc--------chHHHHHHHHHhcCChhHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV--------ITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~ 161 (372)
+++.|..+|+.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..++..+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999864 56678899999999999999999999999875322 24556777889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|...++++ ..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 334567778889999999999999999999853 21122466788999999999999999999998 55
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH---cCCchhHHHHHHHHHhCCCccCCceeE
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI---LGRWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
.|+...+..++..+...|++++|..+++++.+..|+++ .+..++..+.. .|+.+++..++++|...++.+.|.+.-
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 68777788889999999999999999999999999765 66666666554 568999999999999999999887543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-23 Score=200.99 Aligned_cols=297 Identities=12% Similarity=0.054 Sum_probs=187.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.+...+..++..|.+.|++++|..+++.+.+ .+...|..++.++...|++++|+..|+++.+.. +.+...+..+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33444444555555555555555555555442 234455555555555555555555555555432 22344455555
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 159 (372)
.++.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 55555556666665555555543 33445555555666666666666666655543 233455666666677777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 238 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 238 (372)
|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|...|++++|...|+++
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777777766653 3335556666777777777777777777764 33456677777777777888888888888776
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 239 PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 239 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
.. .++...+..+...+...|+ ++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.+.
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22 3356677777777777777 7788888888887787777778888888888888888888888876554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=198.02 Aligned_cols=297 Identities=14% Similarity=0.069 Sum_probs=264.8
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
...+.+..+|..+...|.+.|++++|...|+.+.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 34577889999999999999999999999999865 356789999999999999999999999998863 45678899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCCh
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 157 (372)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ |+..++..++.++.+.|++
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 99999999999999999999999876 66778888899999999999999999998864 5557788899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+ ..+.++..+..+...+...|+ .+|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 99999999999874 45778888999999999999999999999996 346678889999999999999 889999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+ ...| +..++..+...+...|++++|...++++.+.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7 4344 556677888899999999999999999999999999999999999999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-21 Score=168.76 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=225.4
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CC------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KN------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
....|.+..++..+...+.+.|++++|..+++.+.. ++ ...+..++..|.+.|++++|+.+|+++.+.. +++
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cch
Confidence 345677888999999999999999999999998876 22 2467889999999999999999999998753 456
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHH
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTM 147 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 147 (372)
..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|...|+++.+. +..++..+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 78899999999999999999999999988653332 224566788899999999999999998642 35578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
+..+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|+
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999998643333467788999999999999999999999853 5676677889999999999
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH
Q 017414 228 LQEAEKLLRRM-PFEANAAIWGSLLAASNI---YGDVELGECALQHLIK 272 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 272 (372)
+++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999987 667999999988887664 4588999999998887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=166.22 Aligned_cols=297 Identities=8% Similarity=-0.067 Sum_probs=203.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.+.+...+..++..+...|++++|+..|+++.+ | +...+..+...+...|++++|+..|+++.+.. +.+...+..+
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~l 150 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALH 150 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 344455555666666778888888888877765 3 44567777777778888888888888777642 2345566677
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC----cchHHHHHHHHHhcCCh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS----VITWTTMIAGLALHGLG 157 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 157 (372)
..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++++.+.+ ...+..+..++...|++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 777778888888888777776554 2233333333 33677788888888877765432 22344455677778888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH----HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVEL----GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
++|+..+++..+.. +.+...+..+...+...|++++ |...|+++.+. .+.+...+..+...+...|++++|..
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888877654 3345566667777777787775 67777777742 23345677777788888888888888
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++...|++++|...|++....
T Consensus 306 ~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 306 LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 87776 3344 34456666777778888888888888888777776655555677778888888888888777554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-19 Score=164.64 Aligned_cols=291 Identities=11% Similarity=-0.039 Sum_probs=226.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
...++..+.+.|++++|..+++.... | +...+..++.+....|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34566777888999999999888765 3 45566667777788899999999999988753 33566777788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
|++++|...++.+.+.. +.+...+..++.++...|++++|...++++.. |+ ...+..+ ..+.+.|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999888864 55677788888889999999999998887643 32 2333333 34778899999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHhhC-CC
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE----AEKLLRRM-PF 240 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~-~~ 240 (372)
.+......++......+..++.+.|++++|...++.+... .+.+...+..+...|...|++++ |...|++. ..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8877643344445555667788889999999999988853 34456777888888999998885 78888887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.| +...+..+...+...|++++|...++++.+..|.++.++..++.++.+.|++++|...++++...
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55 45678888888899999999999999999999988888888899999999999999988888654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-18 Score=158.17 Aligned_cols=249 Identities=13% Similarity=0.031 Sum_probs=184.0
Q ss_pred CccHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 017414 55 QPNEAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 132 (372)
++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.....|..+..++...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 123 23456666667777888888888888887753 33456777788888888888888888
Q ss_pred HHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 133 FENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 133 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
|++..+ .+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+ ..+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P 464 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFP 464 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 887654 345688888888888999999999998888763 23456666777888888999999999998885 334
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-A-------IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.+...+..+..++...|++++|...|++. ...|+. . .++.....+...|++++|...++++.+++|.+..+
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45778888889999999999999998886 333321 1 11222223334689999999999999999988888
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..++.++...|++++|.+.|++....
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=152.07 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=247.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML-AAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~ 82 (372)
.-..+|+.+...+...|++++|+..++.+.+ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+..... .+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchh
Confidence 3467899999999999999999999999876 3 567899999999999999999999999987 467655443 444
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 159 (372)
..+...|++.+|...|.+.++.. +--...|+.|...+-..|+...|++.|++..+-|+ .+|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 55666789999999998888763 33467788999999999999999999999886544 589999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 160 ALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
|...|.+.... .|+ ...+..+...|-..|+.+.|+..|++..+ +.|+ +..|+.|..++-..|++.+|.+.|.+
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999987765 444 56778888888999999999999999984 3554 68899999999999999999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
. ...| .....+.|...+...|.++.|..+|..+.+..|.-..+++.|+..|..+|+.++|+..|++...
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 7 4455 3557888999999999999999999999999998888999999999999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-17 Score=153.89 Aligned_cols=292 Identities=13% Similarity=0.024 Sum_probs=236.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 355778889999999999999999875 788889999999999999999999999999853 33566888899999999
Q ss_pred CChHHHHHHHHHHHHcC-----------------------------CCCchhHHHHHHH---------------------
Q 017414 89 GAVELGEWIHNYIEQYG-----------------------------LNTIVPLNNALID--------------------- 118 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~--------------------- 118 (372)
|++++|...+..+...+ .+++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 99999987654433211 0111001110100
Q ss_pred ---------HH------HhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H
Q 017414 119 ---------MY------AKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-E 176 (372)
Q Consensus 119 ---------~~------~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 176 (372)
.+ ...+++++|.+.|++..+. ....|+.+...+...|++++|+..|++..+. .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 00 1235788999999887642 3357888889999999999999999999886 344 5
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..|..+...+...|++++|...|+.+.+. .+.+...|..+...+...|++++|...|++. ...| +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 67888888899999999999999999853 3446788999999999999999999999998 5556 566778888899
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|+..++++.+..|.++.++..++.++...|++++|.+.|++....
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-19 Score=151.76 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=227.9
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-------------------------------------hhHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNV-------------------------------------ISWT 44 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------------------------~~~~ 44 (372)
+++.+..+..|..+..++...|+.+.|.+.|.+..+-|+ ..|+
T Consensus 143 iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaws 222 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWS 222 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeeh
Confidence 567778888888888889999998888888877654211 2355
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
.|...+-.+|+...|++.|++.++. .|+ ...|..|.+.|...+.++.|...|.+..... +....++..+...|...
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQ 299 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEecc
Confidence 5555555666666666666666653 343 4466667777777777777777776666543 33455566666677777
Q ss_pred CCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
|.+|-|+..|++..+.+ ..+|+.|..++-..|+..+|.+.|.+.+... +.-....+.|...|.+.|.++.|..+|.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777777765422 3688999999999999999999999888763 2345677788889999999999999998
Q ss_pred HhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 201 IMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
...+ +.|. ...++.|...|-++|++++|+..|++. .++|+. ..++.+...|-..|+.+.|.+.+.+++..+|.-
T Consensus 379 ~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 379 KALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 8883 3444 467788999999999999999999887 777864 578888889999999999999999999999988
Q ss_pred cchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 278 SGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..++..|+..|...|+..+|++-|++....
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 888999999999999999999999887554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-17 Score=160.53 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=92.2
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh---hhHH------------HHHHHHHhCCCccHHHHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV---ISWT------------TLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~~~~~~~~A~~~~~~m 66 (372)
..|.|..++..+...|.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666666666666666543 211 1111 1123455566666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC------
Q 017414 67 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS------ 140 (372)
Q Consensus 67 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 140 (372)
.+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 6542 2344455556666666666666666666666543 222333333333321 112222222222221100
Q ss_pred ------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 141 ------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 141 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
...+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0011222333444555555555555555432 1123334444455555555555555555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-16 Score=153.75 Aligned_cols=299 Identities=12% Similarity=-0.004 Sum_probs=191.6
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHH--------------------------------
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIA-------------------------------- 48 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~-------------------------------- 48 (372)
+.|.+...+..+..++...|++++|++.|++..+ | +...+..+..
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3455666666677777777777777777776654 2 2222222222
Q ss_pred ----------HHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 49 ----------GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 49 ----------~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 2333455555555555555432 1123344445555555555555555555554432 223333333333
Q ss_pred HHHhcCCHHHHHHHHHhcccCCc-------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSV-------------ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 185 (372)
.+...|+.++|...++++..... ..+..+...+...|++++|.++++. .+++...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 44445555555555554432110 0112334556667777777777661 23455566778889
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 263 (372)
+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.+ ...| +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999953 3456788899999999999999999999988 4445 455677778888999999999
Q ss_pred HHHHHHHHHhCCCCc------chHHHHHHHHHHcCCchhHHHHHHHHH-hCCCcc
Q 017414 264 ECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKVMR-DMGVKK 311 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 311 (372)
.++++++....|.++ .++..++..+...|++++|.+.|++.. ..|+.|
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 999999998776544 356667889999999999999998874 345543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-15 Score=143.71 Aligned_cols=299 Identities=12% Similarity=0.027 Sum_probs=196.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.+.+...+..+...+.+.|++++|..+|++..+ | +...+..++.++...|++++|+..++++.+.. +.+.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 455566788888888888888888888888654 3 45667777788888888888888888887752 33445 7777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----------------------
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----------------------- 138 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 138 (372)
..++...|+.++|...++++.+.. |.+...+..+..++...|..++|++.++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 778888888888888888888764 44555555566666666666555544442211
Q ss_pred --------------------------CCcch---HH----HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017414 139 --------------------------KSVIT---WT----TMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILS 184 (372)
Q Consensus 139 --------------------------~~~~~---~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 184 (372)
.++.. +. ..+.++...|++++|+..|+++.+.+.+ |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 01110 00 0022345667788888888887776432 332 2222456
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-------------C---HH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-------------N---AA 245 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-------------~---~~ 245 (372)
+|...|++++|..+|+.+.......+ .......+..++...|++++|..+++++ ...| + ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 77778888888888887764211110 1234555666777888888888887776 2222 2 12
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+..+...+...|+.++|+..++++....|.++..+..++..+...|++++|++.+++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34455567777788888888888887777877777778888888888888888877766553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-15 Score=142.93 Aligned_cols=303 Identities=9% Similarity=-0.012 Sum_probs=228.0
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
.+.|.+...+..++..+...|++++|+..+++..+ | +.. +..+..++...|++++|+..++++.+.. +-+...+.
T Consensus 77 ~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 77 SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45677888888999999999999999999999875 3 455 8888999999999999999999999853 23444555
Q ss_pred HHHHHHHccCChHHHH----------------------------------------------HHHHHHHHc-CCCCchh-
Q 017414 80 AALSACAQLGAVELGE----------------------------------------------WIHNYIEQY-GLNTIVP- 111 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~----------------------------------------------~~~~~~~~~-~~~~~~~- 111 (372)
.+..++...+..+.|. ..++.+.+. ...|+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 5666665555555443 333344432 1122211
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHhcccCC---c-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHH
Q 017414 112 LN----NALIDMYAKSGKIGKALQVFENMKNKS---V-ITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFI 180 (372)
Q Consensus 112 ~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~ 180 (372)
.+ ...+..+...|++++|+..|+++.+.+ + .....+..+|...|++++|+..|+++.+..... ......
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 11 111334567799999999999998643 2 122335778999999999999999988653211 124455
Q ss_pred HHHHHhcccCchHHHHHHHHHhHHhcC----------CCcC---HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 181 AILSACCHVGLVELGRRYFNIMKSRYG----------IEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 666778999999999999999985310 0122 234566778899999999999999998 3344 667
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+..+...+...|++++|++.++++.++.|+++..+..++..+...|++++|..+++++...
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999998653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-18 Score=143.97 Aligned_cols=256 Identities=16% Similarity=0.128 Sum_probs=111.4
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
.+...+.+.|++++|++++.+......+|+ ...|..+...+...++.+.|...++++.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777788888888888865544332343 4444555666777888889998888888765 3356667767777 688
Q ss_pred CCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
+++++|.+++++.-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999888876533 456677788888899999999999999877543 34566778888888999999999999999
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 201 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
++.+. .+.+......++..+...|+.+++.++++.. ....|+..+..+..++...|+.++|...+++..+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99953 2335778888999999999999988888776 2234566788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.....++.++...|+.++|.++.++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-14 Score=137.97 Aligned_cols=294 Identities=13% Similarity=0.036 Sum_probs=201.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-C-----ChhhHHHHHHHHHhCCC---ccHHHHH---------------
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE-K-----NVISWTTLIAGYAQMDQ---PNEAITL--------------- 62 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~A~~~--------------- 62 (372)
.+....-.+.....++|+.++|.++|+.... + +...-+-|+..|.+.+. ..+++.+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 3444555555566778888888888887765 1 22234456666666655 2233222
Q ss_pred -------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 017414 63 -------FRRMQVE-NV-KP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131 (372)
Q Consensus 63 -------~~~m~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 131 (372)
+...... +. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHH
Confidence 1111111 11 23 56667777777666 77777888777776653 444444444555568888888888
Q ss_pred HHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 132 VFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 132 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
.|+++.. ++...+..+..++.+.|++++|...+++..+.+ ++....+..+.......|++++|...+++..+ ..
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~ 606 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IA 606 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hC
Confidence 8887653 344456666777888888888888888887764 22233333333444556888888888888883 35
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
|+...+..+..++.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67778888888888888888888888887 4455 455667777788888888888888888888888888888888888
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
+...|++++|...+++....
T Consensus 687 l~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888877543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-14 Score=137.24 Aligned_cols=263 Identities=11% Similarity=0.014 Sum_probs=216.5
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+...|..+..++.. +++.+|+..|.+.... .|+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45678888888776 8999999988888774 477655555566667999999999999997664 455555667888
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMI---AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
++.+.|+.++|...|++..+.++....... ....+.|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988765544443333 3344559999999999999986 46778888999999999999999
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...+++... .-+.+...+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.++
T Consensus 629 ~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999995 33445678888999999999999999999988 4455 6678889999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
.|++..+....+....+..+++.|.+.+++--...+.
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999988876544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-14 Score=125.17 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=218.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhccCCC--Chhh-HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH--HHHHH
Q 017414 12 WNTMVAGYAK--VGDLNNARALFELMTEK--NVIS-WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML--AALSA 84 (372)
Q Consensus 12 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~ 84 (372)
+..+..+... .|++++|++.+....+. ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l 162 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 3334444443 59999999999877653 2333 433355558899999999999999874 56654333 34677
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-----------chHHHHHHHHHh
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLAL 153 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~ 153 (372)
+...|+++.|...++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+... .+|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999886 66788889999999999999999999999886422 133344444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
..+.+...++++.+-+. .+.+......+...+...|+.++|..++++..+. +++... .++.+....++.+++++
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHH
Confidence 55566677777766443 3456778888999999999999999999999853 455532 23444456699999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+++. ...| |......+...|...+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+++++-..
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99888 4456 55567888899999999999999999999999954 5788999999999999999999987643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=125.44 Aligned_cols=290 Identities=17% Similarity=0.172 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
-.....+...|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 3344445556999999999988876 356788999999999999888888775554432 446778888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc----------------------------
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---------------------------- 141 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------- 141 (372)
+++.|.-.|.++++.. |++...+-.-...|-+.|+...|...|.++.+.++
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999998888876 56666666677888888888888888877654221
Q ss_pred ----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---------------------------CCHHH
Q 017414 142 ----------------ITWTTMIAGLALHGLGREALDMFSRMERARVK---------------------------PNEIT 178 (372)
Q Consensus 142 ----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------p~~~~ 178 (372)
..++.++..|.+...++.|......+...... ++...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 23344444444444455554444444331111 11111
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAA 253 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~ 253 (372)
+ .+.-++.+.+..+....+...+..+ .+ .-++..|.-+.++|...|++.+|+.+|..+ +...+..+|..+..+
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 0 1111222333333333344444332 32 224567888899999999999999999998 222367799999999
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...|.+++|.+.+++++...|.+..+-..|...+.+.|+.++|.+++..+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999998763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=127.47 Aligned_cols=277 Identities=13% Similarity=0.046 Sum_probs=220.3
Q ss_pred cCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHH
Q 017414 22 VGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENV--KPDEIAMLAALSACAQLGAVELGEW 96 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~ 96 (372)
.-+..+|..+|..+++ + ...+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+.-+.+ +-+..
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4467889999999765 3 346677889999999999999999999987521 1256677777665432 12222
Q ss_pred HH-HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 017414 97 IH-NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARV 172 (372)
Q Consensus 97 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (372)
++ +.+.... +..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 33 3333433 5678999999999999999999999999988654 46899999999999999999999998775421
Q ss_pred CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 017414 173 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 249 (372)
Q Consensus 173 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~ 249 (372)
-+-..|..+...|.+.++++.|+-.|+++. .+.| +......+...+-+.|+.++|++++++. ...| |+..--.
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 123456677889999999999999999999 4455 4566667788899999999999999998 4444 5555555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
-+..+...+++++|...++++.++-|++..+|..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6677888999999999999999999999999999999999999999999888766443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=131.88 Aligned_cols=256 Identities=11% Similarity=0.090 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcc-CC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELM-TE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
...+ .+...+.+.|++++|+++++.. .. .|...|..+...+...++++.|++.|+++...+. -+...+..++.
T Consensus 9 ~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~ 86 (280)
T PF13429_consen 9 EEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3344 5688999999999999999643 32 2556677788888889999999999999988652 35556767777
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHHHHHHHhcCChh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 158 (372)
. ...+++++|..++....+. .++...+..++..+.+.|+++++..+++.+.. .+...|..+...+.+.|+++
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 7899999999998877664 35666777889999999999999999998652 45678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|++.+++..+.. +.|......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|+..|++.
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999873 225677888999999999999999999998864 2556677889999999999999999999998
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 239 -PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 239 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
...| |+.....+..++...|+.++|.++.+++.+
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 3345 777788888999999999999999888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-13 Score=119.67 Aligned_cols=288 Identities=11% Similarity=0.036 Sum_probs=207.8
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHhccCC--CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 017414 11 FWNTMVAGYA--KVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALS 83 (372)
Q Consensus 11 ~~~~l~~~~~--~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 83 (372)
.+..+..+.. ..|+++.|.+.+.+..+ |+. ..+-.....+.+.|+++.|.+.+.+..+.. |+. ........
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHH
Confidence 3444555554 47999999999988776 433 334455677888899999999999987753 443 34444578
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHH----HHHHHHHhcCC
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT----TMIAGLALHGL 156 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~ 156 (372)
.+...|+++.|...++.+.+.. |.+..+...+...+...|++++|.+.+..+.+. +...+. .........+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999986 557788889999999999999999999988854 222221 11112233333
Q ss_pred hhHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH---HHHHHHHHHhcCCHHH
Q 017414 157 GREALDMFSRMERARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQE 230 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 230 (372)
.+++.+.+..+..... +.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 3444445555554421 136778888889999999999999999999964 333321 1112222334578888
Q ss_pred HHHHHhhC-CCCCCH---HHHHHHHHHHHHcCChhHHHHHHHH--HHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 231 AEKLLRRM-PFEANA---AIWGSLLAASNIYGDVELGECALQH--LIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 231 a~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
+.+.+++. ...|+. ....++...+.+.|++++|.+.|+. ..+..|+ +..+..++..+.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 334533 5667888999999999999999994 5567774 456889999999999999999999875
Q ss_pred H
Q 017414 305 R 305 (372)
Q Consensus 305 ~ 305 (372)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=124.80 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=198.0
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 132 (372)
+..+|+..|.+.... +.-+......+..+|...+++++|.++|+.+.+... -.+..+|.+.+..+-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999995553 344455666788999999999999999999987531 23577888877765432211111111
Q ss_pred HHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC
Q 017414 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 211 (372)
+-.+.+..+.+|-++..+|.-+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 22223456789999999999999999999999999876 45 67888888888888899999999999998 43332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 212 -IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 212 -~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
-..|..+.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-...+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 355666788999999999999999998 7777 5666777788899999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...+++++|...+++++..
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-12 Score=121.74 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCh-hhHHHH--HHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTEKNV-ISWTTL--IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
.++..+...|+.++|+..+++...|+. ..+..+ +..+...|++++|+++|+++.+.. +-+...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 555555555666666665555554422 222222 335555566666666666655542 2233444445555555556
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCC
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGL 156 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 156 (372)
.++|...++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66666555555543 23333333333333334444445555555543 2 23344444555544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-12 Score=121.61 Aligned_cols=296 Identities=12% Similarity=0.041 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
......+...|...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++.+. .|+...+..++..+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 33334446688999999999999999986 3 4567778889999999999999999999875 56666665555555
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---------------------------
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--------------------------- 138 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------- 138 (372)
...++..+|.+.++++.+.. |.+...+..+.....+.|-...|.++..+-..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 55666666999999999875 55677777788888877776666665543220
Q ss_pred ------------------------CCcc---hH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 017414 139 ------------------------KSVI---TW----TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187 (372)
Q Consensus 139 ------------------------~~~~---~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 187 (372)
+++. .| -=.+-++...|++.++++.|+.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 0010 11 1123456778888999999999988876545567778888999
Q ss_pred ccCchHHHHHHHHHhHHhcC----CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-------------C--CHH-H
Q 017414 188 HVGLVELGRRYFNIMKSRYG----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-------------A--NAA-I 246 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-------------~--~~~-~ 246 (372)
..+++++|..+|+.+....+ .+++......|..+|...+++++|..+++++ ... | |-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999998865321 1234444577888888999999999988887 111 2 222 2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..++..+.-.|+..+|++.++++....|.|+.....+...+...|.+.+|.+.++.....
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3345566778899999999999998888999888899999999999999999988765443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-12 Score=114.96 Aligned_cols=255 Identities=14% Similarity=-0.017 Sum_probs=203.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHH--HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--KNVISWT--TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
|........+.|+++.|...|.++.+ |+..... .....+...|+++.|.+.++++.+.. +-+...+..+...+.+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33335555899999999999999886 4433222 33678899999999999999998864 3466778888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCCh
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 157 (372)
.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+ .++.....+...+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999988654332 1333444444455567777788887753 4777888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++|.+++++..+. +|+.... ++.+....++.+++.+..+...++ .+-|+..+..+.+.+.+.|++++|.+.|+.
T Consensus 280 ~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 280 DTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999885 4554322 333445669999999999999964 455677888999999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 238 M-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 238 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
. ...|+...+..+...+...|+.++|.+.+++...+
T Consensus 354 al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 354 ALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8 77899999999999999999999999999998774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=105.86 Aligned_cols=302 Identities=15% Similarity=0.098 Sum_probs=223.0
Q ss_pred cCCHHHHHHHHhccCCCChhh---HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHH
Q 017414 22 VGDLNNARALFELMTEKNVIS---WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~ 95 (372)
+++.++|.++|-+|.+-|..+ .-+|.+.|.+.|..++|+.+.+.+.++.--+. ......|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578899999999998865544 45788899999999999999999987521111 123445667788999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHH--------HHHHHHHhcCChhHHHHHHHHH
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWT--------TMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+...|+ -+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998755 344556677999999999999999999988765554444 4445556678899999999998
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
.+.+.+ ....--.+.+.....|+++.|.+.|+.+.+. +..--..+...|..+|...|+.++....+.++ ...+....
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 886422 2333335667888999999999999999865 33334567788889999999999999999887 55566666
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH---HcCCchhHHHHHHHHHhCCCccCCceeEEEeCCE
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA---ILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKR 323 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~ 323 (372)
-..+...-....-.+.|...+.+-....| +...+..|+.... .-|.+.+-..+++.|....++..|....-.++-.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~ 363 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFT 363 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCc
Confidence 66666666666777888888888888888 4445666665543 2455778888999998777777766555444433
Q ss_pred EEEE
Q 017414 324 VHEF 327 (372)
Q Consensus 324 ~~~~ 327 (372)
.|.+
T Consensus 364 a~~l 367 (389)
T COG2956 364 AHTL 367 (389)
T ss_pred ceee
Confidence 3433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-12 Score=113.44 Aligned_cols=262 Identities=12% Similarity=-0.009 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh--hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV--ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
+...|-....++.+.|+.+.|.+.|.+..+ |+. ...-.....+...|+++.|.+.++.+.+.. +-+...+..+..
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~ 195 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEE 195 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344556667888899999999999999754 443 234445888899999999999999999874 346667888999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH---Hh----cCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY---AK----SGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
.+...|+++.|.+.+..+.+.+..+.......-...+ .. ....+...+.++...+ .+...+..+...+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999987543332211111111 22 2223444555555543 377889999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEIT--F-IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
.|++++|.+++++..+.. |+... + ..........++.+.+.+.++...+...-.|+......+...+.+.|++++
T Consensus 276 ~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred CCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 999999999999999863 33331 1 112222344678888999998888642222222666789999999999999
Q ss_pred HHHHHhh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 231 AEKLLRR--M-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 231 a~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
|.+.|+. . ...|+...+..+...+...|+.++|.+++++...
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999994 3 6689999999999999999999999999999866
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=108.98 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=170.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------------------
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----------------------- 139 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 139 (372)
.++......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455555555555555555555444444445555555666666666655543
Q ss_pred --------------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 140 --------------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 140 --------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
-+.|...+..-|+-.++.++|...|++.++.+ +.....|+.+..-|....+...|..-++.+.+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 22344445566777889999999999999875 33567788888999999999999999999994
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
-.+.|-..|..|.++|.-.+...=|+-.|++. ..+| |+..|.+|..+|.+.++.++|+..|.++...+..+...+..
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 33457789999999999999999999999998 5566 88899999999999999999999999999988767789999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHh
Q 017414 284 LSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|+..|.+.++.++|...|++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-13 Score=111.67 Aligned_cols=274 Identities=11% Similarity=0.063 Sum_probs=215.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhh-----HHHHHHHHHhC-CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNVIS-----WTTLIAGYAQM-DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
..-|.++|+++.|+++++-..+.|..+ -|.-+.-|.+- .++..|.++-+..+... .-+......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 345789999999999998887754433 22222333333 46778888777666543 334444444444555678
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
++++|...|++.....-.-....|| +.-.+...|++++|+.+|-++. ..+..+.-.+...|-...+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998765444444554 5666888999999999998764 46788888899999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA 245 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~ 245 (372)
.... ++.|+.....|...|-+.|+-.+|.+.+-.--. -++.+..+...|..-|....-+++++..|++. -++|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7655 566778888999999999999999987765542 56778889888999999998999999999998 6789999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCc
Q 017414 246 IWGSLLAAS-NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 294 (372)
Q Consensus 246 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 294 (372)
-|..++..| .+.|++++|..+++...+..|.+......|.+.+...|-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999998855 6779999999999999999999999999999888877643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-11 Score=102.36 Aligned_cols=290 Identities=12% Similarity=0.107 Sum_probs=202.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 14 TMVAGYAK--VGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 14 ~l~~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.+.++..+ .|+|.+|+++..+-.+. ....|-.-+.+.-..|+.+.+-.++.+..+..-.++...+.+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 34444444 68888888888775542 33455566666777788888888888887753355666666777778888
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-----------chHHHHHHHHHhcCCh
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLALHGLG 157 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~ 157 (372)
|+.+.|..-...+.+.+ +-++.+......+|.+.|+++....++.++.+... .+|..++.-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888888888775 55667777788888888888888888888876432 3566666555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
+.-...|++.-.. .+.+...-..++.-+.+.|+.++|.++..+..++ +..|+.. .+ -.+.+-++...-.+..++
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHH
Confidence 5545555554433 3444555566777778888888888888888765 5555511 11 223345555544444444
Q ss_pred C--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 238 M--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 238 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
. ....++..+.+|...|.+.+.+.+|...|+.+.+..| +...|..+++++.+.|+..+|.+.+++-...-.+|
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3 1122447788899999999999999999999999888 55699999999999999999999998876444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-12 Score=102.54 Aligned_cols=268 Identities=12% Similarity=0.100 Sum_probs=210.6
Q ss_pred CcccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 017414 1 MFTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
|++.++....+.-+|.+.|.+.|..++|+++...+.+ ||. .+...|..-|...|-++.|+.+|..+.+.+ .-
T Consensus 61 ~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-ef 139 (389)
T COG2956 61 MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EF 139 (389)
T ss_pred HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hh
Confidence 3456777788888999999999999999999998876 543 245678888999999999999999998765 44
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTT 146 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 146 (372)
-......|+..|....+|++|+.+-+++.+.+-.+. ...|..|...+....+.++|..++.+..+. .+.+--.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 566788899999999999999999999988765543 345677777778888999999999988754 3456667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+...+...|+++.|.+.++...+.+..--..+...|..+|...|+.++...++..+.+. .+....-..+.+......
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQE 296 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhh
Confidence 78889999999999999999999876555677888999999999999999999998854 344444455555555555
Q ss_pred CHHHHHH-HHhhCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHH
Q 017414 227 YLQEAEK-LLRRMPFEANAAIWGSLLAASNIY---GDVELGECALQHLIK 272 (372)
Q Consensus 227 ~~~~a~~-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 272 (372)
-.+.|.. +.+++..+|+...+..++..-..- |...+-...++.|..
T Consensus 297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 297 GIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555555 456667789999999999865433 334555556666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=122.90 Aligned_cols=265 Identities=14% Similarity=0.132 Sum_probs=196.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 017414 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS 140 (372)
Q Consensus 61 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 140 (372)
.++-.+...|+.|+.+||..++.-||..|+.+.|- +|..|.-...+.+..+++.++.+...+++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999999 9999998888889999999999999999888776 788
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+|..|..+|...|+... ++..++ -...+...+...|.-.....++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999776 333332 222344556666766666777776554445556654 3566
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 221 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
.....|-++.+++++..+|...-......+++-+... ..+++.....+...+ .| ++.+|..+.++-...|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 6677888999999998885332111222234433322 233444444444444 34 77899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccccc
Q 017414 300 IRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVL 365 (372)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ 365 (372)
++.+|++.|++..+..+|..+- |.. ....++.+.+.|++.|+.|+.++.-.
T Consensus 226 ll~emke~gfpir~HyFwpLl~--------g~~-------~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLL--------GIN-------AAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhh--------cCc-------cchHHHHHHHHHHHhcCCCCcchhHH
Confidence 9999999999999999996543 322 22344556689999999999988643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-12 Score=105.26 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=102.1
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
++..|....+|..+|.++++--..+.|..++++-.. .+..+||.+|.+-.- ....++..+|....+.||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHh
Confidence 456788889999999999999999999999998765 466677877765432 222677888888888899999
Q ss_pred HHHHHHHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhc
Q 017414 78 MLAALSACAQLGAVEL----GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK-ALQVFENM 136 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 136 (372)
+|+++++..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ |..++.++
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 9999998888887654 55677888888999988888888888888777654 44444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-12 Score=104.08 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
...+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 455566677777777777777777765532 34566677777778888888888888777654 33455666677778
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
...|++++|...++.+......+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888753222234456677788888889999999888887 3334 4567778888888999999999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 265 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 265 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888777777888888888899999999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-11 Score=101.60 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=188.6
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVK--PDEIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.-...++++|+.+|+++.+...- -|..+|..++-+-... -. ..++. ...+.. +-.+.|...+.+-|+-.+
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~--sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK--SK--LSYLAQNVSNID-KYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--HH--HHHHHHHHHHhc-cCCccceeeehhHHHHHH
Confidence 3344566778888888887776311 1345555554332211 11 11111 111111 234556677788888999
Q ss_pred CHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHH
Q 017414 125 KIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 201 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 201 (372)
+.++|...|++..+-| ..+|+.+..-|...++...|++.|+...+-+ +.|-..|..|..+|.-.+.+.-|.-+|++
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999999987644 4689999999999999999999999999874 55788999999999999999999999999
Q ss_pred hHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-------
Q 017414 202 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK------- 272 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 272 (372)
+.. --+.|...|.+|.++|.+.++.++|...|.+. .-..+...+..|...+-+.++.++|.+.+.+..+
T Consensus 424 A~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 983 33457899999999999999999999999998 2244668899999999999999999999998887
Q ss_pred hCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 273 LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 273 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..|....+...|..-+.+.+++++|.......
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 23434445556788889999999998866544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-10 Score=95.20 Aligned_cols=258 Identities=13% Similarity=-0.010 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
....|..-+.+-.+.|+.+.+-+.+.+..++ +...+-+........|++..|..-..++.+.+ +-.+........
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r 195 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALR 195 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHH
Confidence 3455666677778899999999999998874 34567777788999999999999999999875 446677888899
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++...+ .++..-.+++.-+.+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 999999999999999999999865553 4567777777777777777778887763 567888889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
.|+.++|.++..+..+.+..|.. ..+ -.+.+.++...-++..+...+.++. ++..+..|...|.+.+.+.+|..
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred cCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999998877762 222 2466778888888888888765444 44778899999999999999999
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 234 LLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 234 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
.|+.. ...|+..+|..+..++...|+..+|.+..++...
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99987 8889999999999999999999999999999886
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=114.32 Aligned_cols=259 Identities=13% Similarity=-0.004 Sum_probs=186.3
Q ss_pred CChhhHHHHHHHHHh-----CCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 017414 38 KNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPD-EIAMLAALSACA---------QLGAVELGEWIHNYIE 102 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 102 (372)
.+...|...+.+-.. .+..++|+++|++..+. .|+ ...|..+..++. ..+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455566666555322 13467999999999885 454 455655555443 2345789999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
+.. +.+...+..+...+...|++++|...|++..+. +..++..+..++...|++++|+..+++..+.+..+ ...+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~ 409 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAG 409 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhH
Confidence 875 557888888999999999999999999987753 34678889999999999999999999999875332 2223
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI-WGSLLAASNI 256 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~-~~~l~~~~~~ 256 (372)
..++..+...|++++|...++++.+. . +| ++..+..+..++...|++++|...+.++ +..|+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566678999999999998753 2 34 4556777888999999999999999988 44555444 4445556676
Q ss_pred cCChhHHHHHHHHHHH---hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 257 YGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.| +.+...++.+.+ .++.++.. +...+.-.|+.+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 477777777766 33434322 55567777777777666 7776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=113.84 Aligned_cols=209 Identities=9% Similarity=-0.056 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCCh
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK---------SGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLG 157 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 157 (372)
+.++|...+++..+.. |.+...|..+..+|.. .+++++|...+++..+. +..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4566666666666553 2334445444444332 23356666666665532 344566666666666667
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
++|...|++..+.+ +.+...+..+...+...|++++|...++++.+ +.|+. ..+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777776666653 22344555566666666677777776666663 23332 222233334555666666666666
Q ss_pred hC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 237 RM--PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 237 ~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...| +.|...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 55 11232 3334445556666677777766666665555555555555555555555 35555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=104.02 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=146.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
|.-+..+|....+.++..+.|+...+ .|+.+|..-...+.-.+++++|..=|++..... +-+...|.-+..+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 55556666666777777777766553 356677777777777888888888888877753 22445565566666688
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---------HHHHHHHHHHHHHcCC
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---------AAIWGSLLAASNIYGD 259 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---------~~~~~~l~~~~~~~~~ 259 (372)
+.++++...|++..+ .++.-+..|+.....+..++++++|.+.|+.. .+.|. +.+...++-.-- .++
T Consensus 442 ~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KED 518 (606)
T ss_pred HHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhh
Confidence 899999999999997 56777889999999999999999999999887 44443 222223332222 389
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+..|+.+++++.+++|....+|..|+..-..+|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-11 Score=110.97 Aligned_cols=306 Identities=13% Similarity=0.096 Sum_probs=236.1
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKN------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 75 (372)
+...+.|+.+.+.|...|.-.|+++.++.+...+...+ ..+|..+.++|...|++++|..+|.+..+. .|+.
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~ 340 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDN 340 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCC
Confidence 34678899999999999999999999999988887632 346889999999999999999999888875 3444
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhcccC---CcchHHH
Q 017414 76 --IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG----KIGKALQVFENMKNK---SVITWTT 146 (372)
Q Consensus 76 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ 146 (372)
..+..+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..++ |..+|-.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 345578889999999999999999999874 666778888888888775 567888888877665 4556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC--CC------cCHHH
Q 017414 147 MIAGLALHGLGREALDMFSRME----RARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG--IE------PKIEQ 214 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~------~~~~~ 214 (372)
+...+-.. ++..++..|.... ..+-.+.....|.+...+...|+++.|...|........ .. ++..+
T Consensus 420 laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 66666544 4444477666544 345557778899999999999999999999999885311 11 22223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
-..+.+++-..++.+.|.+.|..+ ...|+-. .|..+.......++..+|...++.+...+..+|.++..++..+.+..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 455677777888999999999998 4456543 34445444455688899999999999999889999999999999999
Q ss_pred CchhHHHHHHHHHhCCCcc
Q 017414 293 RWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~ 311 (372)
.|..|.+-|......-...
T Consensus 579 ~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred hhcccccHHHHHHhhhccC
Confidence 9999999777775544333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-11 Score=101.61 Aligned_cols=234 Identities=11% Similarity=0.113 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHh
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL 153 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 153 (372)
+..+|.++|.+.|+-...+.|.+++.+......+.+..+||.+|.+-.-...-+-.-+....-..||..|+|+++++..+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 44455555555555555555555555554444445555555554443222221111111111123555555555555555
Q ss_pred cCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH-HHHHHHHhHHhc---CCCc----CHHHHHHHHHH
Q 017414 154 HGLGRE----ALDMFSRMERARVKPNEITFIAILSACCHVGLVEL-GRRYFNIMKSRY---GIEP----KIEQYGCMIDL 221 (372)
Q Consensus 154 ~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~~~~----~~~~~~~li~~ 221 (372)
.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.... .+.| +...+..-++.
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 554432 44566666677777777777766666666655533 333333333211 1111 22334445555
Q ss_pred HHhcCCHHHHHHHHhhC-------CCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHH--hCCCCcchHHHHHHHHH
Q 017414 222 LGRAGYLQEAEKLLRRM-------PFEAN---AAIWGSLLAASNIYGDVELGECALQHLIK--LEPHNSGNYAILSNIYA 289 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~-------~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~ 289 (372)
|.+..+.+-|.++-.-+ -+.|+ ...|..+..+.+.....+.....|+.+.- ..| ++.+...++++..
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p-~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP-HSQTMIHLLRALD 444 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC-CchhHHHHHHHHh
Confidence 55666666555544333 11222 12344455555555555555555555543 223 4456666666666
Q ss_pred HcCCchhHHHHHHHHHhCC
Q 017414 290 ILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~g 308 (372)
..|.++-.-+++..++..|
T Consensus 445 v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hcCcchhHHHHHHHHHHhh
Confidence 6777777777777666665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-10 Score=96.74 Aligned_cols=319 Identities=14% Similarity=0.181 Sum_probs=198.6
Q ss_pred HhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 017414 20 AKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 97 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 97 (372)
-..|++..|.++|++-.+ |+...|++.|..-.+-+.++.|..+|++.+- +.|+..+|......=.+.|....+.++
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344555555555544332 5666666666666666666666666666554 346666666555555566666666666
Q ss_pred HHHHHHc-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------------------------------------
Q 017414 98 HNYIEQY-GL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKN------------------------------------- 138 (372)
Q Consensus 98 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------- 138 (372)
|+.+++. |- ..+...+.+....=.++..++.|.-+|+-...
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6655542 10 01112222222222233334444333322110
Q ss_pred -------C---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHH---HHHhcccCchHHHHHH
Q 017414 139 -------K---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI-------TFIAI---LSACCHVGLVELGRRY 198 (372)
Q Consensus 139 -------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l---~~~~~~~~~~~~a~~~ 198 (372)
. |-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+ +-.-....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 2234555555566678888888888888765 455321 11111 1111245788888888
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHH----HHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 199 FNIMKSRYGIEPKIEQYGCMIDL----LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
|+...+ -++....|+..+--. -.++.++..|.+++... |..|-..+|...|..-.+.++++.+..++++.++.
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888884 445555665544333 34688999999999887 88999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 350 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (372)
+|.+..+|...+..-...|+++.|..+|+-..+......|...| ..++.=....++.+.+..+.++++++
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw-------kaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW-------KAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH-------HHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887654433343322 11222233456666666666666554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-11 Score=110.69 Aligned_cols=300 Identities=12% Similarity=0.068 Sum_probs=212.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-------CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCC
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE-------KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 72 (372)
+.-+...|.+...+...|++.+|...|+.... ++. .+-..+..+.-..+++..|.+.|....+.. +
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p 527 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-P 527 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-c
Confidence 35566777777778888888888877776543 122 123335555666677888888888777652 2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHH
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM 147 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 147 (372)
--+..|..++......+...+|...+....+.. ..++..+..+...+.+...+..|.+-|+.+.+ +|+.+.-+|
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 234445555544445567777777777777654 55666666677788888888888776665542 244444445
Q ss_pred HHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH
Q 017414 148 IAGLAL------------HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215 (372)
Q Consensus 148 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (372)
...|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++..|..+|.++.+. ......+|
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~ 683 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVW 683 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCcee
Confidence 554432 345678999999888874 446777778888889999999999999999964 23345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH-
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI- 290 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 290 (372)
..+..+|..+|++..|+++|+.. .-..++.+...|..++...|.+.+|.+.+..+....|.++.+-..++....+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 88999999999999999999887 3345788899999999999999999999999999999888665555444332
Q ss_pred ------------------cCCchhHHHHHHHHHhCCCc
Q 017414 291 ------------------LGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 291 ------------------~g~~~~a~~~~~~m~~~g~~ 310 (372)
.+..+.|.++|..|...+-+
T Consensus 764 a~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 764 AESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35567778888888766544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-11 Score=97.14 Aligned_cols=192 Identities=16% Similarity=0.087 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666666666666666666666665542 2234455556666666666666666666666543 3334445555555
Q ss_pred HHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 120 YAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
+...|++++|.+.|++..+. ....+..+..++...|++++|.+.+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666665554321 11233344444445555555555555444432 1123334444444444445555
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
|...+++.... .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 54444444421 12233333334444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=101.34 Aligned_cols=258 Identities=12% Similarity=0.026 Sum_probs=165.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
..-.-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++++.- |....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 33344455566677777777777777653 4555556556667777777666666666666653 555667777777777
Q ss_pred hcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHH
Q 017414 122 KSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 198 (372)
-.|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+..|...-+. ++-....+..+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 7777777777777655433 357777777777777777777777665543 111111222233456667777777777
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--C------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--P------FEA-NAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
|.++.. -.+.|+...+-+.-.....+.+.+|..+|+.. + -.+ -.++++.|..++.+.+.+++|+..+++
T Consensus 403 f~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 403 FKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 777773 22334555555555555666777777776654 1 011 234566677777777777777777777
Q ss_pred HHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 270 LIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 270 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
++.+.|.++.++..++-.|...|+++.|.+.|.+.
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 77777777777777777777777777777777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=100.52 Aligned_cols=224 Identities=13% Similarity=0.051 Sum_probs=189.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHG 155 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 155 (372)
+.+.++|.+.|.+.+|+..++...+. .|-+.||..|-+.|.+..+...|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56889999999999999999988876 56677888899999999999999999988765 3 3344455677788899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL 235 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 235 (372)
+.++|.++|+...+.. +.+......+...|.-.++++-|.++|+++..- |+ .++..|..+.-+|.-.++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988863 335566667777888889999999999999953 65 47888999999999999999999999
Q ss_pred hhC---CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 236 RRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 236 ~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++. -.+| -..+|..+.......|++..|.+.|+-++..+|++...++.|...-.+.|+.++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887 2234 35678889988999999999999999999999999999999999999999999999999887553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-10 Score=98.17 Aligned_cols=280 Identities=10% Similarity=0.034 Sum_probs=223.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
..|+.+...-.+-+...+++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.++++. .+-...+|.++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 356777788888899999999999999999874 4456777778899999999988888888885 345677899999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 159 (372)
.-|...|..++|.++|.+..... +.-...|......|+-.|..|.|...|....+ ++ -..+--+.--|.+.+..+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999988754 33467888999999999999999999887654 22 2233345556888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CC---C-cCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-GI---E-PKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998875 34466677777766777899999999998877311 01 1 1335678899999999999999999
Q ss_pred HhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+++. .. +.+..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9997 33 348888999999999999999999999999999998875555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=103.92 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhccc-------C-
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQY-----G-LNTIV-PLNNALIDMYAKSGKIGKALQVFENMKN-------K- 139 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 139 (372)
..+...+...|...|+++.|..++....+. | ..|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446667889999999999999999988765 2 12332 3334577889999999999999998763 1
Q ss_pred ---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcC--
Q 017414 140 ---SVITWTTMIAGLALHGLGREALDMFSRMERA-----RV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYG-- 207 (372)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 207 (372)
-..+++.|..+|.+.|++++|...++...+. |. .|.. ..++.+...|+..+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888889999999999998888876542 21 2222 3455677788999999999999988775432
Q ss_pred CCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-
Q 017414 208 IEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK- 272 (372)
Q Consensus 208 ~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 272 (372)
+.+ ...+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467899999999999999999999987 1122 244677888899999999999999988766
Q ss_pred ---hCCCC---cchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 273 ---LEPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 273 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+|.+ ..+|..|+.+|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44544 4578899999999999999999988875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=97.04 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=226.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcc
Q 017414 16 VAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRM----QVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.-+|++..-++.|.++++..++ .+...|-+-...--.+|+.+...++..+. ...|+..+...|..=...|-..
T Consensus 413 wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3456677778888888888776 36677877777777888888888877654 4468888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
|..-.+..+....+..|++.. ..+|..-...|.+.+.++-|..+|....+- +...|......--..|..++...+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888888888776543 567777788888888888888888877653 445677777766777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC
Q 017414 164 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~ 242 (372)
|++.... ++-....+......+-..|+...|..++..+-+. .+.+...|..-+..-.....++.|..+|.+. ...|
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 8888876 3445556666667777788888888888888753 2345677778888888888888888888887 6677
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCce
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGC 315 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 315 (372)
+..+|..-+.....+++.++|.+++++.++..|.-+..|..++..+...++.+.|.+.|. .|++.-|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~----~G~k~cP~~ 718 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL----QGTKKCPNS 718 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH----hccccCCCC
Confidence 888888888888888888888888888888888888888888888888888888888775 466655543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=97.38 Aligned_cols=290 Identities=14% Similarity=0.071 Sum_probs=197.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQL 88 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 88 (372)
-...+-|.++|.+++|++.+....+ |+ +..|.....+|...|+|+++.+.-.+.++ +.|+- -.+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445566777888888888887765 66 67788888888888888888887777776 45653 3556666777777
Q ss_pred CChHHHHHHHHHHHH-------------------------------cC--CCCchhHHHHHHHHHHh--------cC---
Q 017414 89 GAVELGEWIHNYIEQ-------------------------------YG--LNTIVPLNNALIDMYAK--------SG--- 124 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~-------------------------------~~--~~~~~~~~~~l~~~~~~--------~g--- 124 (372)
|++++|..-..-..= .+ +-|+.....+....+.. .+
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 887776543222110 00 11222222222221110 00
Q ss_pred --CHHHHHHHHHhcc------------c--------C-----Cc------chHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 125 --KIGKALQVFENMK------------N--------K-----SV------ITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 125 --~~~~A~~~~~~~~------------~--------~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
...++.+.+..-. + + |. .+...-..-+.-.|+.-.|..-|+..+...
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111110 0 0 10 111111122345678888888888888875
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 249 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~ 249 (372)
..++. .|-.+...|....+.++.+..|..+.+ --+-++.+|..-.+.+.-.+++++|..=|++. .+.| +...|..
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 44443 266777789999999999999999983 22346788888899999999999999999998 6666 5667888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..+..+.+.+++++..|++..+..|..+.+|+.....+..+++|+.|.+.|+...+.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999999999999999999999987543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-10 Score=94.60 Aligned_cols=271 Identities=10% Similarity=-0.019 Sum_probs=153.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhH---HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISW---TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
.-+.|+.....+.+.+...|+.++|+..|+....-|+.+. ..-.-.+.+.|+.+....+...+... .+.+...|..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhh
Confidence 3455566666666666666666666666665544322211 11122233455555555555555432 1234444444
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--c-CCcchHHHHHHHHHhcCCh
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK--N-KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~ 157 (372)
-+......++++.|..+-++.++.+ +.+...+..-...+...|+.+.|.-.|+... . -+...|.-|+.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 4444455556666666666655543 3344445444556666677777766666543 2 2556677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH-HHhc-ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHH
Q 017414 158 REALDMFSRMERARVKPNEITFIAIL-SACC-HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 234 (372)
.+|.-.-+...+. .+.+..+.+.+. ..|. ....-++|.++++... .+.|+- ...+.+...+...|+.+++..+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7766665554443 233445554442 2332 2233456666666665 344542 3445556666677777777777
Q ss_pred HhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 235 LRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 235 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
+++. ...||....+.|...+...+.++++...|..+..++|.+..+
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 7665 556777777777777777777777777777777777765543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=78.82 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-11 Score=95.66 Aligned_cols=229 Identities=13% Similarity=0.079 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||..|-++|.+..++..|..++.+-.+. .|.++.......+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998885 577788888999999999999999999998876 36677777788899999
Q ss_pred cCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.++.++|.++|+...+. ++.+...+...|.-.++++-|+.+|++++..|+. +...|+.+.-.|.-.++++-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988753 5566666777888999999999999999999975 6678888888888899999999999
Q ss_pred HHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 200 NIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.+.... --.|+ ...|..+.......|++.-|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 988854 22343 467888888889999999999999887 4344677899999888999999999999999999888
Q ss_pred C
Q 017414 276 H 276 (372)
Q Consensus 276 ~ 276 (372)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 6
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-10 Score=96.35 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=188.9
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA--LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.++|+++.|++++.-..+..-+.-...-+.| +..+.--.++..|.++-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999998877665433222222222 233333446777777777666543 23333333344555668999
Q ss_pred HHHHHHHHhcccCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 127 GKALQVFENMKNKSVITWTTMI---AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++... +..+.....-+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999988876554443 3577889999999999887754 34466677778888988999999999999887
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
. -++.|+.....|.+.|-+.|+-..|.+.+-.- . +..+..+..-|..-|....-+++++.+|+++.-+.|+-. -|
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kw 662 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KW 662 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HH
Confidence 4 66778899999999999999999999976655 3 334777888888888888899999999999998888544 56
Q ss_pred HHH-HHHHHHcCCchhHHHHHHHHHh
Q 017414 282 AIL-SNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 282 ~~l-~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+ ..++.+.|++++|.++|+....
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 5667789999999999998854
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=77.21 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=39.7
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 017414 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188 (372)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 188 (372)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777888888888888888888888888888888888888888877764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-09 Score=92.48 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=179.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|-....-+-..|++..|..++....+ | +...|-+-+.....+..+++|..+|.+... ..|+...|.--++.
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANL 660 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHH
Confidence 334444444444445555555555554443 1 234455555555555555555555555544 23444455444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
-.-.+..++|.+++++.++. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.|...--+.|..-.|.
T Consensus 661 er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 44455555555555555554 233344555555555555555555555554432 2 2334555555555555666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (372)
.++++.+-.+ +-+...|...|..-.+.|+.+.|..+..++.. ..+.+...|..-|....+.++-....+.+++..
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce-- 814 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-- 814 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--
Confidence 6666555443 23445555556666666666666666666554 334444555555555555555555555555542
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEE
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIE 319 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 319 (372)
-|..+...+...+-...+++.|..-|.++.+.+|++-.+|..+...+...|.-++-.++++..... .|.-|..|..
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 355666777778888889999999999999999999999999999999999999999999887554 3444445543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-09 Score=91.26 Aligned_cols=217 Identities=10% Similarity=0.010 Sum_probs=153.7
Q ss_pred CCccHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 54 DQPNEAITLFRRMQVEN-VKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 54 ~~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
+..+.++.-+.+++... ..|+ ...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777542 2222 3457778888999999999999999999875 556888999999999999999999
Q ss_pred HHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC
Q 017414 131 QVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 207 (372)
Q Consensus 131 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 207 (372)
..|++..+ | +..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998865 3 35688888889999999999999999988763 4432222222234456789999999977653 3
Q ss_pred CCcCHHHHHHHHHHHHhcCCH--HHHHHHHhhC-CCC----C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 208 IEPKIEQYGCMIDLLGRAGYL--QEAEKLLRRM-PFE----A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~-~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..|+...+ .+... ..|+. +++.+.+.+. ... | ....|..+...+...|++++|...|+++.+.+|.+.
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33433222 23333 34443 3333333322 111 1 335788889999999999999999999999997543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-10 Score=100.04 Aligned_cols=231 Identities=14% Similarity=0.099 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHc-----C--CC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVE-----NV-KPDEIA-MLAALSACAQLGAVELGEWIHNYIEQY-----G--LN 107 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 107 (372)
+...|...|...|++++|+.++.+.++. |. .|...+ .+.+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555889999999999999999888764 21 233333 334777889999999999999988753 2 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc----------CCc-chHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN----------KSV-ITWTTMIAGLALHGLGREALDMFSRMERA---RVK 173 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 173 (372)
--..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2246677888899999999999888876642 111 35677788899999999999999876642 122
Q ss_pred CC----HHHHHHHHHHhcccCchHHHHHHHHHhHHhc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-----
Q 017414 174 PN----EITFIAILSACCHVGLVELGRRYFNIMKSRY-----GIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM----- 238 (372)
Q Consensus 174 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~----- 238 (372)
++ ..+++.|...|...|++++|.++++.+.... +..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578899999999999999999999987642 11222 356788889999999999888888776
Q ss_pred ---CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 239 ---PFEANA-AIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 239 ---~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+-.|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334443 5799999999999999999999998875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-10 Score=94.21 Aligned_cols=213 Identities=15% Similarity=0.082 Sum_probs=155.0
Q ss_pred CChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHH
Q 017414 89 GAVELGEWIHNYIEQYG-LNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
+..+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777777542 122 245678888999999999999999998764 356799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CC
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PF 240 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~ 240 (372)
.|++..+.. +-+..++..+..++...|++++|.+.++...+. .|+..........+...++.++|...|.+. ..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999864 224567777888889999999999999999853 444322222233345678899999999765 32
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-------HhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLI-------KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
.|+...+ .......|+...+ ..+..+. ++.|..+.+|..++..+.+.|++++|...|++......
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 2233445666544 3444444 34566667999999999999999999999998876543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-09 Score=95.01 Aligned_cols=304 Identities=13% Similarity=0.089 Sum_probs=191.5
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
++.|.|...|-.+.+...+.|++++|.-+|.+..+. +...+--=+..|-+.|+...|...|.++.....+.|..-+.
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 345555556666666666666666666666655542 22222333445556666666666666666542211211111
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----C-----------
Q 017414 80 ----AALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----K----------- 139 (372)
Q Consensus 80 ----~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------- 139 (372)
..++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+.. +
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 2334444555556666666655542 2234455667777788887788887776655432 1
Q ss_pred -----------CcchHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 140 -----------SVITWT----TMIAGLALHGLGREALDMFSRMERARVKP--NEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 140 -----------~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
+..+|. -+.-++......+....+...+....+.| +...|.-+.+++.+.|.+..|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111 12233444444444445555555555333 4567888999999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC------
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE------ 274 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 274 (372)
... ...-+...|..+.++|...|.++.|.+.|+.. ...| +...-..|...+.+.|+.++|.+.+..+..-+
T Consensus 441 ~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 965 33335778999999999999999999999998 5556 44556667778899999999999998865222
Q ss_pred ---CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 275 ---PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+++...-......+...|+.++=..+-..|.+.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 223345566777888999999877777666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-08 Score=82.86 Aligned_cols=306 Identities=11% Similarity=-0.015 Sum_probs=221.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHhccC--C---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 017414 14 TMVAGYAK--VGDLNNARALFELMT--E---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLAALSAC 85 (372)
Q Consensus 14 ~l~~~~~~--~~~~~~A~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~ 85 (372)
..+.+++. .++...|..++-.+. + .|+.....+..++...|+.++|+..|++.... .|+..+ .....-.+
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH
Confidence 34444444 344444444433332 2 47778899999999999999999999988764 454332 22333345
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
.+.|+.+....+...+.... .-+...|..-+......+++..|+.+-++..+. +...|-.-...+...|++++|.-
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 67788888888777776543 234444544555666778899999999887654 45566666678899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHH-hcCCHHHHHHHHhhC-C
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLLG-RAGYLQEAEKLLRRM-P 239 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~-~ 239 (372)
.|+...... +-+...|..|+..|...|.+.+|.-.-+...+ -++.+..+.+.+. ..+. ....-++|..++++. .
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 999887652 34568999999999999999999988887774 4455666666663 3333 334468899999887 7
Q ss_pred CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEE
Q 017414 240 FEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYI 318 (372)
Q Consensus 240 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 318 (372)
++|+- .....+...+..-|..+.++.++++.....|+ ......|+..+...+.+++|++.|.....
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------ 499 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR------------ 499 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------
Confidence 77864 45677777899999999999999999998885 45899999999999999999998876533
Q ss_pred EeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 319 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
..|+.+....-+.++.+.|+
T Consensus 500 --------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 --------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred --------------cCccchHHHHHHHHHHhccC
Confidence 35666677766755555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-09 Score=93.02 Aligned_cols=255 Identities=11% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG--- 124 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 124 (372)
.+...|++++|++.+..-... -+|.. .+......+.+.|+.++|..+|..+++.+ |.+...|..|..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554332 23333 33345556666666666666666666665 444445555555442221
Q ss_pred --CHHHHHHHHHhcccCCc--chHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 --KIGKALQVFENMKNKSV--ITWTTMIAGLALHGLG-REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 --~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
..+...++|+++....+ .+...+.-.+.....+ ..+..++..+...|+++ +|..+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 34555566665543211 1111111111111112 33455666677777653 4555555566555555555555
Q ss_pred HHhHHhc-------------CCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 017414 200 NIMKSRY-------------GIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 200 ~~~~~~~-------------~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 262 (372)
....... .-+|+. .++..+...|-..|++++|++.+++. ...|+ +..|..-...+-..|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 5544221 113444 34466678888999999999999877 44565 5677788888999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|.+.++.+..+++.|...-.-.+..+.+.|+.++|.+++...-..+.
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999988887777888888999999999999988766555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-08 Score=85.86 Aligned_cols=302 Identities=11% Similarity=-0.049 Sum_probs=193.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChh---hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 78 (372)
+|.....|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+.. +.+...+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 466677888888888888988887777766543 2222 22333455678899999999999998753 3344444
Q ss_pred HH---HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHH
Q 017414 79 LA---ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA 152 (372)
Q Consensus 79 ~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 152 (372)
.. ........+..+.+.+.+... ....+........+...+...|++++|...+++..+ .+...+..+..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 42 222222345555555555541 111122334455667789999999999999998764 34567888999999
Q ss_pred hcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-H--HHHHHHHhcC
Q 017414 153 LHGLGREALDMFSRMERARV-KPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-G--CMIDLLGRAG 226 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g 226 (372)
..|++++|...+++...... .|+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999887532 2232 235567788999999999999999986321111222211 1 2333333444
Q ss_pred CHHHHHHH---HhhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-C---C-----CcchHHHHHHHHHH
Q 017414 227 YLQEAEKL---LRRM----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-P---H-----NSGNYAILSNIYAI 290 (372)
Q Consensus 227 ~~~~a~~~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~ 290 (372)
....+.+. .... +.............++...|+.+.|...++.+.... . . ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 32222222 1111 111112222345667788899999999999887622 1 1 23344556667789
Q ss_pred cCCchhHHHHHHHHHhCC
Q 017414 291 LGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 291 ~g~~~~a~~~~~~m~~~g 308 (372)
.|++++|.+.+......+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-09 Score=80.09 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
+.-.|...|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 35556666777777777777777776653 3344566666666777777777777777766654 445566666666666
Q ss_pred hcCCHHHHHHHHHhccc-C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 122 KSGKIGKALQVFENMKN-K----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 66666666666665542 3 224566666666666666666666666665531 12334455555556666666666
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.+++....+ ..++..+.-..|+.--+.|+.+.+.+.=.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 666666542 23555555555555555555555544333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-08 Score=83.59 Aligned_cols=346 Identities=12% Similarity=0.101 Sum_probs=240.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH----HHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AML 79 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~ 79 (372)
.|+.-.|++.|+.=.+.+.++.|..++++.. .|++.+|---...--+.|+...|..+|....+. + .|.. .+.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~-~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-L-GDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-h-hhHHHHHHHHH
Confidence 5899999999999999999999999999865 489999998888888999999999999998764 1 1222 222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc-------------------------------------------CCCCchhHHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQY-------------------------------------------GLNTIVPLNNAL 116 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~l 116 (372)
+....=.+...++.|.-+|...+.. .-+.|-.+|-..
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 2222222334444444444333211 014455667777
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCc-----chHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSV-----ITWTTMIAG--------LALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
++.-...|+.+...++|++....-+ ..|.-.|-. -....+.+.+.++|+..++. ++-...||..+=
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiW 407 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIW 407 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHH
Confidence 7888888999999999998764211 123322222 13467899999999998884 444556666443
Q ss_pred HHh----cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 017414 184 SAC----CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 257 (372)
Q Consensus 184 ~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 257 (372)
-.| .+..++..|.+++..+. |..|...++-..|..=.+.++++.+..+|++. ...| +-.+|......-...
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 333 46788999999999999 88999999999999999999999999999997 6666 677899999888999
Q ss_pred CChhHHHHHHHHHHHhCCC--CcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeC-----
Q 017414 258 GDVELGECALQHLIKLEPH--NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAG----- 330 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~----- 330 (372)
|+.+.|..+|.-++..... ....|-..|..-...|.++.|..+++.+.+..--...++++.........--.+
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~ 564 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAE 564 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhh
Confidence 9999999999999873311 123566667777789999999999999987644333333332211100000000
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHcCcc
Q 017414 331 -DTSHPDFDRLYQILCKINGQMKFAEHL 357 (372)
Q Consensus 331 -~~~~~~~~~~~~~~~~~~~~m~~~g~~ 357 (372)
.........+..++++....++..+-+
T Consensus 565 ~e~~~~~~~~AR~iferAn~~~k~~~~K 592 (677)
T KOG1915|consen 565 LEITDENIKRARKIFERANTYLKESTPK 592 (677)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHhcCcH
Confidence 001114556666677777777666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=78.51 Aligned_cols=199 Identities=16% Similarity=0.020 Sum_probs=155.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
+...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++..+ .+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45566777888899999999999988875 55677888888889999999999998887654 456788888888899
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
.|++++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+ ..+....+...+.+.....|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999988887532222 35677776667788999999999988884 33334566677888888889999998
Q ss_pred HHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 233 KLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 233 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..++.. ...++..+....|......|+.+.+-+.=..+.+..|.++
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888887 4447777777778888888888888888778877888654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-08 Score=88.34 Aligned_cols=288 Identities=14% Similarity=0.061 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-ALSACA 86 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~ 86 (372)
+.-....++...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 334456678899999999999988665 454 456778899999999999999999999975 66665554 444442
Q ss_pred c-----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccCCc-chHHHHHHHHHhcCChhH
Q 017414 87 Q-----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKNKSV-ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 87 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 159 (372)
- ..+.+...++++.+.+.- |.......+.-.+.....+ ..+..++..+.+.++ .+++.+-..|......+-
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 2 235677788888887653 3222222222112221122 234444555555555 566666666665555555
Q ss_pred HHHHHHHHHHc----C----------CCCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHH
Q 017414 160 ALDMFSRMERA----R----------VKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLL 222 (372)
Q Consensus 160 a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 222 (372)
..+++...... + -+|+. .++..+...|...|++++|.++.+...+. .|+ +..|..-.+.|
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 55666555432 1 12343 24456677788999999999999999952 455 68888889999
Q ss_pred HhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCC-------cchHHHHHHHHHHc
Q 017414 223 GRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHN-------SGNYAILSNIYAIL 291 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~ 291 (372)
-..|++.+|.+.++.. ... -|...-+..+..+.+.|++++|...+....+.+ |.. .......+.+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 333 366666777778899999999999998887644 221 12235668899999
Q ss_pred CCchhHHHHHHHHH
Q 017414 292 GRWNESGKIRKVMR 305 (372)
Q Consensus 292 g~~~~a~~~~~~m~ 305 (372)
|++..|++-|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998666553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=95.16 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=191.9
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 160 (372)
.+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- |..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888999999999998875 667899999999999999999999999887654 556777788889999999999
Q ss_pred HHHHHHHHHcCCCC--------CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 161 LDMFSRMERARVKP--------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 161 ~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
++.++.-+....+- +...-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999876643110 0000000 2233344556667777777665565678888899999999999999999
Q ss_pred HHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 233 KLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 233 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+.|+.. .++| |..+|+.|...+....+.++|+..|++++++.|.-.++...|+..|...|.|++|.+.|=.....--.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999998 6777 67789999999999999999999999999999999999999999999999999999976554332111
Q ss_pred cCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 017414 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354 (372)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 354 (372)
. .. .....++ .+.+++.|+..+-.|...
T Consensus 531 s--~~-------------~~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 531 S--RN-------------HNKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred c--cc-------------cccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 0 00 0000111 678888887777766543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-07 Score=85.17 Aligned_cols=299 Identities=19% Similarity=0.171 Sum_probs=186.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-DEIAMLAAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 82 (372)
.|..+|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+........| |...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5788999999999999999999999998765 345678889999999999889998888766543224 334443333
Q ss_pred HHHH-ccCChHHHHHHHHHHHHc--C----C-------------------------------------------CCchhH
Q 017414 83 SACA-QLGAVELGEWIHNYIEQY--G----L-------------------------------------------NTIVPL 112 (372)
Q Consensus 83 ~~~~-~~~~~~~a~~~~~~~~~~--~----~-------------------------------------------~~~~~~ 112 (372)
..|. +.+..+++..+-.++... + + +.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4343 445566655555554431 1 0 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC--------------
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERA-RVK-------------- 173 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-------------- 173 (372)
..-+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 11233334445555555555554432 24556777777777777777777777665542 110
Q ss_pred ----CCHHHHHHHHH-----------------------------------------------------------------
Q 017414 174 ----PNEITFIAILS----------------------------------------------------------------- 184 (372)
Q Consensus 174 ----p~~~~~~~l~~----------------------------------------------------------------- 184 (372)
-...|...++.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 00001111111
Q ss_pred ------------------HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CH
Q 017414 185 ------------------ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NA 244 (372)
Q Consensus 185 ------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~ 244 (372)
.+.+.+..++|...+.++.. -.+.....|......+...|+.++|.+.|... -+.| ++
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11111122222222222221 11112233344444555667777777777665 5566 56
Q ss_pred HHHHHHHHHHHHcCChhHHHH--HHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGEC--ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
....++...+...|+...+.. ++..+.+++|.++..|..|+..+.+.|+.++|.+.|......
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 678888899999999888888 999999999999999999999999999999999999877544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=91.06 Aligned_cols=248 Identities=12% Similarity=0.044 Sum_probs=151.8
Q ss_pred HHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 19 YAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
+.-.|++..++.-.+ .... +.....-+.+++...|+++.++ .+..+.. .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888886555 2221 2334566778888888876554 3343333 56666665555544443444444
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 95 EWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
..-++........ .+..+.......+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23333333445666778888888888765 45666777788888888888888888888764 3
Q ss_pred CCHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHH
Q 017414 174 PNEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIW 247 (372)
Q Consensus 174 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~ 247 (372)
.|. +..-+..++. ....+..|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++. ...| +..+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 3333444433 23468888888888875 45677778888888888888888888888775 3333 55566
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhCCCCc
Q 017414 248 GSLLAASNIYGDV-ELGECALQHLIKLEPHNS 278 (372)
Q Consensus 248 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 278 (372)
..++.+....|+. +.+.+++.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6677777777777 667778888888888665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-09 Score=89.77 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=165.9
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+.+.-.|++..++.-.+ ........+.....-+.+++...|+.+.+. ..+.... .|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556789999987666 332221223344556778888899877543 3443433 566666655555554445666
Q ss_pred HHHHHHHhcc-cC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 128 KALQVFENMK-NK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 128 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
.+..-+++.. ++ +..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666544 22 1222222334566789999999987653 35667777888999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHH----hcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 203 KSRYGIEPKIEQYGCMIDLLG----RAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
. .+..|. +...+..++. -.+++.+|..+|+++ ...+++.+.+.+..+....|++++|+.++.++.+.+|.
T Consensus 158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8 334443 3344444443 344789999999999 44578888999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCc-hhHHHHHHHHHhC
Q 017414 277 NSGNYAILSNIYAILGRW-NESGKIRKVMRDM 307 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 307 (372)
++.+...++.+....|+. +.+.+.+.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 5677788887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-07 Score=75.11 Aligned_cols=295 Identities=11% Similarity=0.077 Sum_probs=218.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHH---HHHHhCCCccHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI---AGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LAAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 82 (372)
.++.-.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++ ++||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 34444555677788889999999999998887777777665 578899999999999999988 57885432 2344
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCC--chhHH------------HHHHHHHHhcCCHHHHHHHHHhcccC---CcchHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNT--IVPLN------------NALIDMYAKSGKIGKALQVFENMKNK---SVITWT 145 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 145 (372)
..+.+.|.++.|..-|+.+++..... ....+ ...+..+...|+...|+.....+.+. |...|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 56789999999999999999864211 11111 12344566788999999998888753 556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH----HHHH---
Q 017414 146 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ----YGCM--- 218 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l--- 218 (372)
.-..+|...|.+..|+.=++..-+..- -+..++..+-..+...|+.+.++...++.. .+.|+-.. |-.|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHH
Confidence 788899999999999988877766543 344555566677788899999888888887 56676422 1111
Q ss_pred ------HHHHHhcCCHHHHHHHHhhC-CCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 219 ------IDLLGRAGYLQEAEKLLRRM-PFEANA-----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 219 ------i~~~~~~g~~~~a~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
+......+++.++++-.+.. ...|.. ..+..+-.++...+++.+|++...++++..|++..++..-..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12234567777777777665 445542 234455567778899999999999999999999999999999
Q ss_pred HHHHcCCchhHHHHHHHHHhC
Q 017414 287 IYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+|.....++.|+.-|+...+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999988877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-08 Score=94.69 Aligned_cols=201 Identities=14% Similarity=0.176 Sum_probs=172.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 178 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 178 (372)
|.+...|-..|......++.++|.+++++..+. -...|.+++..-...|.-+...++|+++.+.. . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 556778889999999999999999999988742 22478888888788888889999999988752 2 2356
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAAS 254 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~ 254 (372)
|..|...|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|..++.+. |.+.........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998766 67788999999999999999999999887 3333555667777788
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
.+.|+.+++..+|+....-.|.....|..+++.-.++|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999888864
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-08 Score=77.60 Aligned_cols=284 Identities=11% Similarity=0.073 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-ALSACAQ 87 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~ 87 (372)
+.+++..+.+..+++.|++++..-.+ | +....+.|..+|....++..|-..|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 56777778899999999999877665 3 5567889999999999999999999998763 566665543 3456678
Q ss_pred cCChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV--PLNNALIDMYAKSGKIGKALQVFENMK-NKSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.+.+..|.++...|... ++. .....-.......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 88899999888777643 221 111111223446788999999999988 466777777777788999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-------------CH--------HHHHHHHH---
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-------------KI--------EQYGCMID--- 220 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~--------~~~~~li~--- 220 (372)
+...+-+--.....|+..+. ..+.|+.+.|.++..++.++ |+.. |+ -+-+.++.
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99888654445567876654 45668999999999988865 5532 11 11233333
Q ss_pred ----HHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 221 ----LLGRAGYLQEAEKLLRRMP----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 221 ----~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
.+.+.|+++.|.+.+-.|| -..|+.|...+.-. -..+++....+-+.-+.+++|-.+.+|..++..|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 3467899999999999993 23466666554322 23456777777888888889988899999999999999
Q ss_pred CchhHHHHHHH
Q 017414 293 RWNESGKIRKV 303 (372)
Q Consensus 293 ~~~~a~~~~~~ 303 (372)
-++-|.+++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 99999988754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-08 Score=89.38 Aligned_cols=203 Identities=16% Similarity=0.152 Sum_probs=132.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.||..+|..+|.-|+..|+++.|- +|.-|.-. +...++.++.+..+.|+.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 578899999999999999999998 88887642 3445666666666666655543 4666677777
Q ss_pred HHHHHccCChHH---HHHHHHHHH----HcCC-----------------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 82 LSACAQLGAVEL---GEWIHNYIE----QYGL-----------------NTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 82 ~~~~~~~~~~~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
..+|...||... +.+.+..+. ..|+ -|+.. ..+....-.|-++.+++++..+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 777777776543 222111111 1111 11111 11222222333333333332221
Q ss_pred ---------------------------------c-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 138 ---------------------------------N-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 138 ---------------------------------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
+ ++..+|.+.+.+-..+|+.+.|..++.+|.+.|.+.+..-|..|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 1 466788888888888888888888888888888887777777766
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
-+ .++...++.++.-|.+. |+.|+..|+...+-.+..+|.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 44 67778888888888855 888888888777666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-06 Score=74.07 Aligned_cols=313 Identities=10% Similarity=-0.006 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH--
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA-- 115 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 115 (372)
...|..+...+...|+.+.+...+.+..+... .++.. ........+...|++++|...++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34677777888888999998887777665421 22322 22233445678899999999999998874 445444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 017414 116 -LIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191 (372)
Q Consensus 116 -l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 191 (372)
+.......|..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665333222 344456678899999999999999999874 3445677788889999999
Q ss_pred hHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC--C-HHHH-H--HHHHHHHHcCChhH
Q 017414 192 VELGRRYFNIMKSRYGIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA--N-AAIW-G--SLLAASNIYGDVEL 262 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~--~-~~~~-~--~l~~~~~~~~~~~~ 262 (372)
+++|..++++........++. ..|..+...+...|++++|..++++. ...| . .... . .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988532212332 34557888999999999999999986 2223 1 1111 1 22333344454443
Q ss_pred HHHH---HHHHHHhCCCCc--chHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC-CceeEEEeCCEEEEEEeCCCCCCC
Q 017414 263 GECA---LQHLIKLEPHNS--GNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM-PGCSYIEVSKRVHEFVAGDTSHPD 336 (372)
Q Consensus 263 a~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (372)
+.+. ........|... ........++...|+.+.|..+++.+.......+ .+..+..+...+-. .......++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~-A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE-ALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH-HHHHHHcCC
Confidence 3333 122111112221 2223567778899999999999999866433210 00001000000000 001123456
Q ss_pred hHHHHHHHHHHHHHHHHcC
Q 017414 337 FDRLYQILCKINGQMKFAE 355 (372)
Q Consensus 337 ~~~~~~~~~~~~~~m~~~g 355 (372)
.+++.+.+.+.......-|
T Consensus 323 ~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 323 YATALELLGPVRDDLARIG 341 (355)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7777777777666654443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-07 Score=74.98 Aligned_cols=289 Identities=12% Similarity=0.031 Sum_probs=144.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CChhhHHH-HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTE--KNVISWTT-LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
++..+.-..-.+++|++++.++.. |+-...|. +..+|.+..-++-+.+++.-.++. ++-++...+..+....+.=+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 455555566678888888888876 33334443 345667777778777777776664 23333444443333333211
Q ss_pred hHHHHHHHHH--------------HHHcC------------CCC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 91 VELGEWIHNY--------------IEQYG------------LNT-----IVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 91 ~~~a~~~~~~--------------~~~~~------------~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
-..|..-... +.+.+ +-| -+..-..|+--|.+.++.++|..+.+++...
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 1111111111 11111 001 0112233555688899999999998888765
Q ss_pred CcchHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC
Q 017414 140 SVITWTTMIAGLALHGL-------GREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 211 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 211 (372)
++.-|-.-.-.+++.|+ ..-|.+.|+-.-..+..-|. .---++..++.-..+++++..+++.+..- -...|
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 55444333333333332 33344444433222222111 11112233333344566667666666632 22223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHhCCCCcchH-HHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSL-LAASNIYGDVELGECALQHLIKLEPHNSGNY-AILSNI 287 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~ 287 (372)
... ..+.++++..|++.+|+++|-++ +.+ .|..+|.++ .++|.+.+.++.|..++-++ ..|.+.... .....-
T Consensus 394 ~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIAND 470 (557)
T ss_pred hhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHH
Confidence 332 24566777777777777777666 211 244444443 34566666666665443222 112222222 223445
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
|.+++.|=-|-+.|+.+...
T Consensus 471 CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHHHHHhhhHHHcc
Confidence 66666666666666666443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-06 Score=73.58 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=98.4
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
.+..+.+.|..+.-.+....++++|++.|..... .|...|.-|...-++.|+++.......+..+.. +-....|..
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~ 148 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIG 148 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHH
Confidence 3456667777777777777777777777776553 344555555555556666666666655555531 223345556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC-CCchhHHHHH------HHHHHhcCCHHHHHHHHHhcccC--Ccc-hHHHHHHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGL-NTIVPLNNAL------IDMYAKSGKIGKALQVFENMKNK--SVI-TWTTMIAG 150 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~ 150 (372)
+..+.--.|+...|..+.+...+... .|+...+.-. .....+.|..++|.+.+..-... |-. .-..-...
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence 66666666777777777776665431 3444433222 12334556666666655544322 111 12233445
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFI 180 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 180 (372)
+.+.+++++|..++..++.. -||...|.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 66677777777777777765 34544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-07 Score=76.75 Aligned_cols=182 Identities=13% Similarity=-0.007 Sum_probs=125.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C-c---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKNK--S-V---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITF 179 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~ 179 (372)
.....+..++..+...|++++|...|+++.+. + . .++..+..++.+.|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566677888889999999999999887642 2 2 36677888889999999999999998876322111 234
Q ss_pred HHHHHHhccc--------CchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 017414 180 IAILSACCHV--------GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250 (372)
Q Consensus 180 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 250 (372)
..+..++... |+.+.|.+.++.+.+. .|+ ...+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444555443 6788888888888854 333 223222221111 00000 0111245
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCC---cchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 251 LAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...+...|++++|...++.+.+..|++ +..+..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567889999999999999999987654 468899999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-06 Score=69.44 Aligned_cols=276 Identities=10% Similarity=0.001 Sum_probs=200.8
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH---HHHHHHhCCCccHHHHHHHHHHhCCCCCC-----
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT---LIAGYAQMDQPNEAITLFRRMQVENVKPD----- 74 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----- 74 (372)
+.+|.|..++-.-...|...|+-..|+.=|.++.+.-+..+.+ -...+.++|.+++|..-|+..+.......
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 3455666666666778888898888888888887633333333 33567899999999999999987642111
Q ss_pred -------HHHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCcc
Q 017414 75 -------EIAM--LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVI 142 (372)
Q Consensus 75 -------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 142 (372)
...+ ...+..+...|+...|+.....+++.. +-+...+..-..+|...|+..+|+.=++... ..+..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 1112 233445667789999999999999874 6688899989999999999999987666544 45667
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHH---------HHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEI----TFIAI---------LSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
++.-+-..+...|+.+.++...++-++. .||.. .|..+ +....+.+++.++..-.+...+. .
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---e 299 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---E 299 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---C
Confidence 7777888889999999999988887765 45542 22211 12234556777777777777643 4
Q ss_pred cC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 210 PK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 210 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
|. ...+..+-.++...|++.+|++.-.+. .+.|| +.++.--..+|.....++.|+.-|+.+.+.++.+..+-.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 43 223445566777889999999988776 66775 778888888999999999999999999999998765544
Q ss_pred HH
Q 017414 283 IL 284 (372)
Q Consensus 283 ~l 284 (372)
-+
T Consensus 380 Gl 381 (504)
T KOG0624|consen 380 GL 381 (504)
T ss_pred HH
Confidence 43
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-07 Score=74.01 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=92.3
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HHcCC--hhHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS-NIYGD--VELG 263 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~a 263 (372)
.++.+++...++.... .-+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777664 33567788888888888888999988888887 4455 566677777654 56676 4889
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 264 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.++++++.+.+|.++.++..++..+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999888888889889999999999999998886643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-06 Score=73.85 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC--C---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE--K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
+.+|-..+..+.++|++.....+|++... | ....|...+......+-++-++.+|++.++. .|.. -..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 34566677777888888888888877653 1 2345666666666666677777777777652 2322 344455
Q ss_pred HHHccCChHHHHHHHHHHHHc----------------------------------------CC--CCc--hhHHHHHHHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQY----------------------------------------GL--NTI--VPLNNALIDM 119 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~----------------------------------------~~--~~~--~~~~~~l~~~ 119 (372)
.++..+++++|.+.+...... |+ -+| ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 556666666665555444311 11 112 2467788889
Q ss_pred HHhcCCHHHHHHHHHhcccC--CcchHHHHHHHH----------------------------------------------
Q 017414 120 YAKSGKIGKALQVFENMKNK--SVITWTTMIAGL---------------------------------------------- 151 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~---------------------------------------------- 151 (372)
|.+.|.+++|..+|++.... .+.-++.+..+|
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999988875532 111111111111
Q ss_pred --------------------HhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 152 --------------------ALHGLGREALDMFSRMERARVKPN------EITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 152 --------------------~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
...|+..+-...|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+-
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 1122333344444444332 2221 124555666666777777777777776632
Q ss_pred cCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC-----------------CHHHHHHHHHHHHHcCChhH
Q 017414 206 YGIEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA-----------------NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 206 ~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~-----------------~~~~~~~l~~~~~~~~~~~~ 262 (372)
..+-- ..+|......=.+..+++.|++++++. |..| +...|..++...-..|-++.
T Consensus 417 -~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 417 -PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred -CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 22111 234444444555566677777777665 2111 23345555555555666677
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
...++++++++.--.|......+..+....-++++.++|+
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777776665555555555555555555666666664
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-07 Score=75.27 Aligned_cols=237 Identities=11% Similarity=0.004 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+..+-..+...++.++|+.+..++++. .|+ ..+|+....++...+ +++++...++.+.+.. +.+..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 334444455556666666666666653 333 334444444444445 4566666666666554 34444555444444
Q ss_pred HhcCCH--HHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc---Cch
Q 017414 121 AKSGKI--GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV---GLV 192 (372)
Q Consensus 121 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~ 192 (372)
.+.|+. +++..+++++.+ .|..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 444432 444555544443 23345555555555555555555555555554422 233333332222222 111
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH----cCChhHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI----YGDVELGECA 266 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~ 266 (372)
+ ...++..+...+. ...| |...|+.+...+.. .++..+|..+
T Consensus 196 ~--------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 196 E--------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred c--------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 0 0012333333222 2233 34445555554444 2334456666
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcC------------------CchhHHHHHHHHHhCCCccCCceeE
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILG------------------RWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
+.++.+.+|.++.+...|++.|.... ..++|.++++.+. ...|....+|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 66666666666666677777776532 2356777777772 4444443333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-06 Score=82.88 Aligned_cols=236 Identities=12% Similarity=0.030 Sum_probs=128.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
++.+...+..|+..|...+++++|.++.+...+ |+ ...|..+...+.+.++.+++..+ .+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 456666677777777777777777777765544 32 23344444455566655544443 2221
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
......++..+..+...+... ..+...+..|+.+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.+
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 122222222222233333332 22333455566666666666666666666554 2445666666666666 666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|++++.+.... +...+++..+..+|.++.. ..+.+...+..+.+..... .
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------R 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------h
Confidence 666666554432 3334455666666666653 2122222222222222111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 239 PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+..--..++..+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222334455556667777788888888888888888888778888887776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-07 Score=79.57 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=185.6
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
..+.+.|+..+|.-+|+..++.. +-+...|.-|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34568899999999999998874 4577899999999999999999999999999875 556788888999999999999
Q ss_pred HHHHHHHhcccCCc-chHHHHH---------HHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 128 KALQVFENMKNKSV-ITWTTMI---------AGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 128 ~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
.|...++.-..... ..|.... ..+..........++|-++.. .+..+|......|.-.|--.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999887642110 0000000 112222334455566655544 443466777777777788899999999
Q ss_pred HHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 197 RYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
..|+.+.. +.| |..+||.|.-.++...+.++|+..|.+. .++|+-+ +...|.-+|...|.+.+|...|-.++.+
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999993 455 5689999999999999999999999998 7888654 5666778899999999999999888875
Q ss_pred CCC-----C-----cchHHHHHHHHHHcCCchhHHHHH
Q 017414 274 EPH-----N-----SGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 274 ~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.+. . ..+|..|=.++...++.|.+.++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 433 1 136767766777777777555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-07 Score=82.62 Aligned_cols=212 Identities=13% Similarity=0.031 Sum_probs=149.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCcchHHHHHHHHHhcCC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK--NKSVITWTTMIAGLALHGL 156 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 156 (372)
..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+.. +|+...|..+++......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344555666666666666666543 34456777777777777777665443 3566677777776666666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+++|.++.++.-.. .-..+.....+.++++++.+.|+.-.+- -+.-..+|..+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 77777766654322 1111112223357777777777766632 23355778788888888999999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 237 RM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 237 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.. ...|| ...|+.+-.+|.+.++..+|...++++.+.+-.+..+|...+....+.|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 87 56674 56799999999999999999999999999887788889888889999999999999999886543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-07 Score=83.01 Aligned_cols=190 Identities=20% Similarity=0.217 Sum_probs=162.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017414 105 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 184 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 184 (372)
+.+|-...-..+...+.+.|-...|..+|+++. .|...|.+|...|+..+|..+..+..+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 356666677788999999999999999999865 788889999999999999999998887 3789999999999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 262 (372)
......-+++|+++.+....+ .-..+.....+.++++++.+.|+.- .++| ...+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999999887653 1122333344588999999999876 5555 66789999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|.+.|.....+.|++...|+.+..+|.+.|+..+|...+++..+-..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999877663
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-06 Score=72.81 Aligned_cols=282 Identities=17% Similarity=0.146 Sum_probs=173.9
Q ss_pred cCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 017414 22 VGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
.|+-++|......-.. .+.+.|..+.-.+....++++|++.|+.....+ +-+...+.-+.-.-.+.++++......
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444444444433333 234567777766666777777777777777653 345556666655566667777777666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHH------HHHHHhcCChhHHHHHHHHH
Q 017414 99 NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM------IAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~ 167 (372)
..+.+.. +.....|..++.++.-.|++..|..+.++..+ ++...+... .......|..+.|.+.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6666653 33455667777777777888888777776653 233333222 23345667777777776654
Q ss_pred HHcCCCCCHHHH-HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-HHHHHHHHh-cCCHHHHHHHHhhC------
Q 017414 168 ERARVKPNEITF-IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-GCMIDLLGR-AGYLQEAEKLLRRM------ 238 (372)
Q Consensus 168 ~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~-~g~~~~a~~~~~~~------ 238 (372)
... ..|...+ ..-...+.+.+++++|..++..+..+ .||..-| ..+..++.+ .+..+....+|...
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 432 1222222 23345567788999999999999854 4554333 333334331 11111111222211
Q ss_pred -----------------------------------------------------------------C------------CC
Q 017414 239 -----------------------------------------------------------------P------------FE 241 (372)
Q Consensus 239 -----------------------------------------------------------------~------------~~ 241 (372)
+ -.
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0 13
Q ss_pred CCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 242 ANAAIW--GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 242 ~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
|....| ..++..+-..|+++.|...++.+++..|.-+..|..-++.+...|+.++|...+++.+..+.+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 444444 345667788899999999999999988877777888889999999999999999988766554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-06 Score=82.16 Aligned_cols=296 Identities=15% Similarity=0.052 Sum_probs=192.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC----CC--------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----H
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE----KN--------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE----I 76 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~ 76 (372)
......+...|++++|..++..... .+ ......+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4455566678899998888876532 11 112233445566789999999999988763111121 2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC----
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGL---NT--IVPLNNALIDMYAKSGKIGKALQVFENMKN-------KS---- 140 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~---- 140 (372)
..+.+...+...|+++.|...++......- .+ .......+...+...|+++.|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345556667789999999999888774311 11 123445667788899999999998876542 11
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERAR--VKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY- 215 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 215 (372)
...+..+...+...|++++|...+.+..... ..+. ...+..+...+...|+.+.|.+.+..+..-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1234455566777899999999998876531 1122 2344445667778899999999888875321111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHhhCC-CC-CCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhC------CCCcc
Q 017414 216 ----GCMIDLLGRAGYLQEAEKLLRRMP-FE-ANAA----IWGSLLAASNIYGDVELGECALQHLIKLE------PHNSG 279 (372)
Q Consensus 216 ----~~li~~~~~~g~~~~a~~~~~~~~-~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 279 (372)
...+..+...|+.+.|...+.... .. .... .+..+..++...|++++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 112244456889999999987762 11 1111 13456667888999999999999988732 11234
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+...++.++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66778889999999999999999886644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-06 Score=71.75 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
.+.+.|++..|...|.++ ...| |...|..-.-+|.+.|.+..|..-.+..++++|+....|.--+.++....+|+.|.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666 2234 55566666667777777777777777777777766666666666666667777777
Q ss_pred HHHHHHHh
Q 017414 299 KIRKVMRD 306 (372)
Q Consensus 299 ~~~~~m~~ 306 (372)
+.|.+-..
T Consensus 447 eay~eale 454 (539)
T KOG0548|consen 447 EAYQEALE 454 (539)
T ss_pred HHHHHHHh
Confidence 76665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-05 Score=71.01 Aligned_cols=283 Identities=14% Similarity=0.172 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--------
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKN-------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-------- 73 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-------- 73 (372)
-..|-.+.+.|-+.|+++.|..+|++..+.+ ..+|..-...-.+..+++.|+++.++.....-.|
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 3568888999999999999999999987732 2356666666667788999999888775421111
Q ss_pred ---C------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CC
Q 017414 74 ---D------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KS 140 (372)
Q Consensus 74 ---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 140 (372)
- ...|...+..--..|-++....+|+.+....+. ++.+.......+-...-++++.++|++-.. |+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 1 123444444455667888888888888887643 344433455555666678999999998664 34
Q ss_pred c-chHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHhcccCchHHHHHHHHHhHHhcCCCcC--H
Q 017414 141 V-ITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFIAIL--SACCHVGLVELGRRYFNIMKSRYGIEPK--I 212 (372)
Q Consensus 141 ~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 212 (372)
+ ..|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+ ..--+-|....|..+++++.. ++++. .
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l 622 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRL 622 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHH
Confidence 3 366666655543 3458999999999998 6776643332222 112245888899999999875 55554 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHHhC-CC-CcchHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW---GSLLAASNIYGDVELGECALQHLIKLE-PH-NSGNYAILSN 286 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~ 286 (372)
..|+..|.--...--+.....+|++. ..-|+...- ..+...-.+.|..++|..++....++- |. +...|...=.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 66777776555444445556666665 334555443 334445678899999999999998855 43 4556777777
Q ss_pred HHHHcCCch
Q 017414 287 IYAILGRWN 295 (372)
Q Consensus 287 ~~~~~g~~~ 295 (372)
.=.+.|+-+
T Consensus 703 FEvrHGned 711 (835)
T KOG2047|consen 703 FEVRHGNED 711 (835)
T ss_pred HHHhcCCHH
Confidence 777888843
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-07 Score=71.93 Aligned_cols=157 Identities=9% Similarity=-0.014 Sum_probs=107.9
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556666677777777766665432 23344555567777777788888888887777664 67777888888888888
Q ss_pred CCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
|+.+.|..-|.+..+ .+....+.+...+.-.|+.+.|..++......+.. |...-..+..+....|+++.|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888777776543 45667777777777788888888887777766432 44455556666777788888777665
Q ss_pred HhH
Q 017414 201 IMK 203 (372)
Q Consensus 201 ~~~ 203 (372)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-06 Score=72.25 Aligned_cols=182 Identities=15% Similarity=0.026 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhcccC---Ccc---
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNALIDMYAKSGKIGKALQVFENMKNK---SVI--- 142 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--- 142 (372)
......+..+...+.+.|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888899999999999999999998864 3222 46677899999999999999999998752 222
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH
Q 017414 143 TWTTMIAGLALH--------GLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (372)
++..+..++... |++++|.+.|+.+... .|+. .....+.... .. ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------H
Confidence 456666666654 7789999999999876 3432 2222111110 00 00000 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
....+...|.+.|++.+|...+++. +..| ....+..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124566788889999998888887 2223 346778888888999999999988888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=68.28 Aligned_cols=122 Identities=13% Similarity=0.012 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.++++..+. .|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3432 33455666777777878777777773 22345677777777777788888888877776 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
.| +...+..+..++...|++++|+..++.+.+..|.++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56667777777777788888888888888877777766666555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-05 Score=68.27 Aligned_cols=211 Identities=12% Similarity=-0.029 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCC-CccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
..+++.+-..+...++.++|+.+.+.+.+.+ ..+|+.-..++...| ++++++..++++.+.. +-+..+|+....+
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3456677777888999999999999988743 345666666667777 5799999999999864 3455567766656
Q ss_pred HHccCCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhc---CC
Q 017414 85 CAQLGAV--ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALH---GL 156 (372)
Q Consensus 85 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~---~~ 156 (372)
+.+.+.. +++..+++.+.+.. +.+..+|+....++...|+++++++.++++.+. |..+|+....++.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 6666653 67788888888876 668899999999999999999999999999864 556888877776654 22
Q ss_pred h----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh
Q 017414 157 G----REALDMFSRMERARVKPNEITFIAILSACCHV----GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224 (372)
Q Consensus 157 ~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (372)
. ++.++...+++... +-+...|+.+...+... +...+|...+.++.. .-+.+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 2 45677776666653 34566777776666652 344567777777663 223356667777787775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=70.03 Aligned_cols=108 Identities=7% Similarity=-0.030 Sum_probs=92.5
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+.++++.. .+.|+ .+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...|+++.++
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666666 23444 3556788899999999999999998 4455 7778899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|.++.++..++.++...|++++|...|+......
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999886643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-06 Score=80.40 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=118.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 218 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 218 (372)
++.++-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+.+++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4778888888889999999999999988876 454 45666777888889999999999998884 334456777778
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchh
Q 017414 219 IDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
..++.+.|++++|..+|+++ .-.| +..++..+..++...|+.++|...|+++.+...+....|+.++. +...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHH
Confidence 88888999999999999888 2234 46788888888899999999999999998866445455554432 2233
Q ss_pred HHHHHHHHHhCC
Q 017414 297 SGKIRKVMRDMG 308 (372)
Q Consensus 297 a~~~~~~m~~~g 308 (372)
-..+++.+.-.+
T Consensus 235 ~~~~~~~~~~~~ 246 (694)
T PRK15179 235 DLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHcCccc
Confidence 344555554333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=54.62 Aligned_cols=33 Identities=39% Similarity=0.678 Sum_probs=23.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 105 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
|++||..+|++|+++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-06 Score=68.17 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
+..|...|+++.+....+++..+. ..+...++.++++..++...+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877766654433221 01223566778888888877764 457778888888999999999999
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH-HhcCC--HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLL-GRAGY--LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998884 2244667777888764 67676 58999999888 4455 66777888888999999999999999999
Q ss_pred HhCCCCcchH
Q 017414 272 KLEPHNSGNY 281 (372)
Q Consensus 272 ~~~p~~~~~~ 281 (372)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9887765443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-06 Score=80.53 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CcchHHHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY-GLN---TIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIA 149 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~ 149 (372)
..|...+......++.++|.++.+++... ++. --..+|.++++.-..-|.-+...++|++..+- ....|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444455555555555555555554432 100 01233444444444444444455555554432 1234555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCC
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 227 (372)
.|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+. ++- ........+..-.+.|+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCC
Confidence 555555555555555555543 2223344555555555555555555555555531 111 12222333333344555
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
.+.+..+|+.. .-.| -...|+.++..-.++|+.+.+..+|+++..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 55555555544 1111 3334555555555555555555555555553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-05 Score=60.42 Aligned_cols=251 Identities=13% Similarity=0.036 Sum_probs=153.8
Q ss_pred HHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 17 AGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
+-+.=.|++..++..-..... .+...-.-+.++|...|.+...+.- ..... .|.......+......-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334445777766665544332 2334444556777777776654432 22222 33334443333333333443332
Q ss_pred -HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 95 -EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
.++.+.+.......+......-+..|+..|++++|++..+... +..+...-...+.+..+.+-|.+.+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 3344444443333333333334566888889999988888733 44444444566778888888888888888642
Q ss_pred CCHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHH
Q 017414 174 PNEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIW 247 (372)
Q Consensus 174 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~ 247 (372)
+..|.+-|..++. ..+.+..|.-+|+++.+ +.+|++.+.+...-++...|++++|..+++.. ....++.+.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 4556665555543 45568888888888885 56788888888888888888999998888887 333466666
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhCCCCc
Q 017414 248 GSLLAASNIYGDV-ELGECALQHLIKLEPHNS 278 (372)
Q Consensus 248 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 278 (372)
..++.+....|.. +...+.+.++....|.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6666666666655 445567777777777665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4e-06 Score=66.85 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (372)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 444555666666666666666544321 22334444566666777777777777777763 456667777777777777
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 225 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.|+++.|..-|.+. .+.| +....+.+...+.-.|+.+.|..++.......+.++.+-..|.......|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777776665 3333 334456666666677777777777777776666666677777777777777777766553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00014 Score=64.06 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA-NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
.+....+++++.......|+ -+|..++..-.+..-+..|..+|.++ +..+ ++.+..+++.-++ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44445555555544333433 34556666666777777888888777 3333 4555566665444 46777788888
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+--++..++++..-...+.-+...++-..+..+|++....++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 8777777777766667777777777777777788777766554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-05 Score=66.00 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHHHH-HHHHc-CChhHHHHHHHHHHHhCCCC-cchHHHHHHHHHHcCCchhHHHH
Q 017414 225 AGYLQEAEKLLRRM-PFEANAAIWGSLLA-ASNIY-GDVELGECALQHLIKLEPHN-SGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~~~~~~~~l~~-~~~~~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
.+.-+.+.++-... +..|... +..++. +.... ..+..+..++....+..|.+ ..+....+......|+++.|.++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666565 3334433 344444 33332 34788888888888888876 34556667788899999999999
Q ss_pred HH
Q 017414 301 RK 302 (372)
Q Consensus 301 ~~ 302 (372)
+.
T Consensus 399 l~ 400 (652)
T KOG2376|consen 399 LS 400 (652)
T ss_pred HH
Confidence 98
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-08 Score=53.10 Aligned_cols=32 Identities=38% Similarity=0.599 Sum_probs=23.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-05 Score=67.19 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH--------HhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN--------IMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
+..+.+++...-+....-........+......|+++.|.+++. .+.+ .+..|. +...+...+.+.++.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCC
Confidence 44555555554443222223344445555667788888888877 4442 133333 334556666666655
Q ss_pred HHHHHHHhhC-----CCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 229 QEAEKLLRRM-----PFEANAA----IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 229 ~~a~~~~~~~-----~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
+-|.+++.+. .-.+... ++..+...-.+.|+.++|..+++++.+.+|++..+...++.+|++. +.+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 5555554443 1112222 3333344445679999999999999999999999999999999887 6788877
Q ss_pred HHHHH
Q 017414 300 IRKVM 304 (372)
Q Consensus 300 ~~~~m 304 (372)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 76544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0001 Score=73.48 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=177.2
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHH
Q 017414 18 GYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--V----KPDE--IAMLAALSAC 85 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~ 85 (372)
.+...|+++.+..+++.++. .+..........+...|++++|...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34445666666666666532 122333344455567788999888888765421 0 1111 1122233455
Q ss_pred HccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC--cchHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKN-------KS--VITWTTMIAGLA 152 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~ 152 (372)
...|+++.|...++...+.-...+ ....+.+...+...|++++|...+++... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678899999999988776311112 12345566777889999999988887652 11 134456677788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CCCc--CHHHHHHHHHHH
Q 017414 153 LHGLGREALDMFSRMERA----RVK--P-NEITFIAILSACCHVGLVELGRRYFNIMKSRY-GIEP--KIEQYGCMIDLL 222 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~~li~~~ 222 (372)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...-. ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876652 211 1 12334445556677799999998888775421 1112 233444566777
Q ss_pred HhcCCHHHHHHHHhhC----CCCCCHHHH-----HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch----HHHHHHHHH
Q 017414 223 GRAGYLQEAEKLLRRM----PFEANAAIW-----GSLLAASNIYGDVELGECALQHLIKLEPHNSGN----YAILSNIYA 289 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~ 289 (372)
...|++++|...+.+. ........+ ...+..+...|+.+.|...+.......+..... +..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999998887776 111111111 111234455788888888877655422222211 456788899
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|...+++....
T Consensus 703 ~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 703 LLGQFDEAEIILEELNEN 720 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-05 Score=61.26 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHc---C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcccC--C-cchHHHHHHHHHhcCChhHHH
Q 017414 90 AVELGEWIHNYIEQY---G-LNTIV-PLNNALIDMYAKSGKIGKALQVFENMKNK--S-VITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+.++..+++..+... | ..++. .+|..++-+....|+.+.|..+++++... + ..+-..-..-+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 445555555555421 2 23332 33445555566677778888777776542 2 122222223345678899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
++|+.+++.+ +.|.+++..-+...-..|.--.|++-+....+ .+..|...|.-+...|...|++++|.-+++++ -+
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999998875 45667777666666667777788888888886 66789999999999999999999999999998 44
Q ss_pred CCC-HHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 241 EAN-AAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 241 ~~~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
+|. ...+..+...+... .+.+.+.++|.+..++.|.+...+..+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 564 44455555554443 456788899999999988655444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-05 Score=66.43 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=102.4
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|.++.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999985 44556677777889999999999999999998 55676 5667788889999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|+.+++.....+|+++..|..|..+|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888777663
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-05 Score=62.77 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=157.0
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+-+.-.|++..++..-...... +-+...-.-+.++|...|.+..... .+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3344567777776655544332 1233333345567777776654322 222222 333333333333333344433
Q ss_pred HHH-HHHHhcccC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 128 KAL-QVFENMKNK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 128 ~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
+-+ ++.+.+..+ +......-...|+..|++++|++....... ......+ ...+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 332 334444333 222333344568899999999999876221 1222222 33456777899999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+ + .+..+.+.|..++.+ .+++.+|.-+|+++ ...|+..+.+....++...|++++|+.+++.++..++.
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 84 2 345666667666654 45789999999999 47789999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCchhHHH-HHHHHHh
Q 017414 277 NSGNYAILSNIYAILGRWNESGK-IRKVMRD 306 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 306 (372)
+|.+...++.+-...|.-.++.. .+.+++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999988888887766544 6666644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=64.25 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
......+...+...|++++|..+|+-+ ...| +...|..|..++...|++++|+..|..+..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556777788999999999999998 4455 56678888889999999999999999999999999999999999999
Q ss_pred HcCCchhHHHHHHHHHh
Q 017414 290 ILGRWNESGKIRKVMRD 306 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~ 306 (372)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-06 Score=73.65 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
-..|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..+.. +-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 33444555555566666666666655544455555555555555556666665555432 23444444444555555666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
+.|..+.+++.+.. |.+-.+|..|..+|...|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666655542 3334455556666666666666665555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-06 Score=72.55 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 191 (372)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345667777888999999999999998888888888999988999999999999988753 3456666667777889999
Q ss_pred hHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 017414 192 VELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 242 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 242 (372)
.+.|..+.+++.+ ..| +..+|..|..+|...|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999984 345 45799999999999999999999999886444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-05 Score=73.35 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-.|.....+.|++++|+.+++...+. .|+. .....+..++.+.+++++|....++..... +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 344444444445555555555555554442 3332 233344444455555555555555544443 333344444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
++.+.|++++|..+|+++..++ ..++..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555444322 23444444444455555555555554444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-05 Score=70.50 Aligned_cols=243 Identities=15% Similarity=0.128 Sum_probs=130.0
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..+++..-+|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3457888888888888888888877443 355678888899999999999888888887776566554 46888
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA--------------------RVKPNEIT 178 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p~~~~ 178 (372)
+|++.+++.+.++++. -||.........-|...|.++.|.-+|...-.- .-..+..|
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 8888888877766543 233333344444444444444444333321100 00113345
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI 256 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 256 (372)
|.-+-.+|...+.+.-|. +. ..++-....-..-++.-|-..|-+++...+++.. |++. .-..|+.|.-.|++
T Consensus 1252 WK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHhchhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 555555554444443321 11 0011122333444555666666666666666554 3221 23334444444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
. ++++..+.++-.... - ..--+++++..+.-|.+..=+|.+-
T Consensus 1326 y-kp~km~EHl~LFwsR-v----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSR-V----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred c-CHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 223333333322220 0 1113455566666666665555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-05 Score=70.91 Aligned_cols=280 Identities=11% Similarity=0.031 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE-----------KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 75 (372)
+..+|..+..+|.+.++++-|.-.+-.|.. .|. ..-.-..-.....|-.++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 445677777777777777777666666643 011 22222223334556666666666666542
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----------------
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---------------- 139 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------- 139 (372)
..|=..|...|.+++|.++-+.--+. . -..||.....-+...++.+.|++.|++...+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 22334455666666666654432211 1 1234444555566667777777777654321
Q ss_pred -------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc----------C----------CCCCHHHHHHHHHHhcccCch
Q 017414 140 -------SVITWTTMIAGLALHGLGREALDMFSRMERA----------R----------VKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 140 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~----------~~p~~~~~~~l~~~~~~~~~~ 192 (372)
|...|.=....+-..|+.+.|+.+|....+. | -.-|......+.+.|...|++
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 3333333344444566666666666654431 0 012333444556666666666
Q ss_pred HHHHHHHHHhHHhcC---CCcCHHHHHHHHHHHHhc--CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 193 ELGRRYFNIMKSRYG---IEPKIEQYGCMIDLLGRA--GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
.+|..+|.++..-.+ +......-..|....... .+.-.|-..|++.|.. +...+..|-+.|.+.+|.++.
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHH
Confidence 666666665542100 000000001111111111 1223334444444322 122333455666666665543
Q ss_pred HHH---------H-HhCCC-CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 268 QHL---------I-KLEPH-NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 268 ~~~---------~-~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-+- . +++|. +|.....-.+.+....++++|..++...
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211 1 24443 5656666667777777788777766544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-06 Score=63.28 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
.....+...+...|++++|...++.+ ...| +...+..+...+...|+++.|...++.+.+.+|.++.++..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33444555556666666666666655 2223 445555555566666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 017414 291 LGRWNESGKIRKVMRD 306 (372)
Q Consensus 291 ~g~~~~a~~~~~~m~~ 306 (372)
.|++++|...++....
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-05 Score=70.87 Aligned_cols=240 Identities=14% Similarity=0.132 Sum_probs=157.8
Q ss_pred cHHHHHHHHH--HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-C--------CCCCHH
Q 017414 8 LYKFWNTMVA--GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N--------VKPDEI 76 (372)
Q Consensus 8 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~~~ 76 (372)
|..+--++++ .|..-|+++.|.+-...+. +...|..+.+.|.+.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 3444444443 3556788888877665544 4467888999999988888776666555321 1 1222 2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-cchHHHHHHHHHhcC
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-VITWTTMIAGLALHG 155 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~ 155 (372)
+=..+.-.....|.+++|..+|++-++. ..|=..|-..|.|++|.++-+.-.+-. -.+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222333445788999999999887764 345567888999999999877543322 246777777777788
Q ss_pred ChhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH
Q 017414 156 LGREALDMFSRM----------ERAR---------VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216 (372)
Q Consensus 156 ~~~~a~~~~~~~----------~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 216 (372)
+.+.|++.|++. +... ...|...|.--.......|+++.|+.+|..+.+ |.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 888888888753 1111 112344455555566678899999998888874 44
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
++++..|-.|+.++|-++.++-+ |......|.+.|-..|++.+|..+|.++..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56777777777777777777754 555566677777777777777777665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-05 Score=68.19 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDL 221 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~ 221 (372)
.|......+.+.+..++|...+.+.... .+-....|......+...|.+++|.+.|.... -+.| ++....++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 4556667788899999999888887765 23455566666677788899999999999888 4455 46788899999
Q ss_pred HHhcCCHHHHHH--HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 222 LGRAGYLQEAEK--LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 222 ~~~~g~~~~a~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
+.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|...|+.+.++.+.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999998777777 88777 5556 678899999999999999999999999999886655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-06 Score=76.08 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=42.0
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKN-----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
++++.|...+..+.+.|++..+++.|..+.-...+.+ ...|--..-.|.+.++...|+.-|+...+.. +-|...
T Consensus 520 eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~ 598 (1238)
T KOG1127|consen 520 ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNL 598 (1238)
T ss_pred cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHH
Confidence 3444444444444444444444444444422221111 0111122223334444444444444444322 224444
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
|..+..+|...|.+..|.++|.++..
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHh
Confidence 55555555555555555555554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=60.26 Aligned_cols=113 Identities=10% Similarity=0.008 Sum_probs=85.9
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 163 MFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 163 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+..++...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455544 33 3344556677788889999999999888752 3456778888888999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.| +...+..+...+...|++++|...++.+.+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777788888999999999999999999887664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-05 Score=68.29 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=131.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH-HH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LA 80 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ 80 (372)
..+.|+...+...+.+......-..+-.++....+ .....+.-..-.+...|++++|+..++.+.+. .|+...| ..
T Consensus 268 ~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 35667777777777766665555555555444444 23333444444466888999999999998875 4555544 45
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCCh
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 157 (372)
....+...++.++|.+.++.+.... +......-.+..+|.+.|+..+|+.++++... .|+..|..|..+|...|+.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 5678889999999999999998864 33366667788999999999999999988764 4678999999999999988
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.++.....+ .+...|+++.|...+....+.
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 877765443 445568888888888888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.9e-05 Score=67.39 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=87.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVI--TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
+.+......|.+|+.+++.+...+.. -|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44556667777777777777654332 35666677788888888887776421 24445667788888888
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
|.++-.+.. |-..+...|..-..-+-..|++.+|.++|-.++ .|+. .|..|-+.|..+..+++..+
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 777766655 445555666666666667777777777776665 3433 34556666666666655544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-05 Score=68.38 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=106.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
.+.+......+.+|+.+++.+.... .....|..+.+.|+..|+++.|.++|-+.- .++--|..|.+.|+|.+|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444556677888888887776553 234456778888899999999999887543 455667888899999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 017414 161 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF 240 (372)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 240 (372)
.++-.+.. |.......|..-..-.-+.|.+.+|+++|-.+. .|+. -|..|-+.|..++.+++.++-.-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 88766543 334444555555555667777777777765544 2332 35666677777777776666521
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQ 268 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 268 (372)
.--..|...+..-+-..|+...|+.-|-
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 2222344444444555555555554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=67.33 Aligned_cols=237 Identities=15% Similarity=0.223 Sum_probs=152.8
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
.|+..-+.-+.++...+-+.+-++++++..-.+..- .......|+-.-+-..+...+.++.+++-.-. .|+ +
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------H
Confidence 466667777888888888888888888876432111 11122222222222334555556665555433 222 2
Q ss_pred HHHHHhcCCHHHHHHHHHhccc-------------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 117 IDMYAKSGKIGKALQVFENMKN-------------------------KSVITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
...+...+-+++|..+|++... ..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 3333344445555555544321 13468999999999999999999877542
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~ 251 (372)
-|+..|.-++..+.+.|.+++-.+++..++++ .-.|.+. +.||-+|++.+++.+.++++. .|+......+.
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVG 1201 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHh
Confidence 25678999999999999999999999888865 4456554 478999999999988776653 36666677777
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.-|...|.++.|.-++... ..|..|...+...|+++.|.+.-+
T Consensus 1202 drcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777776665533 244555555666666665554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-05 Score=62.51 Aligned_cols=196 Identities=10% Similarity=0.078 Sum_probs=124.4
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 16 VAGYAKVGDLNNARALFELMTEKN----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
++-+....++..|+.+++--...+ ..+--.+..++.+.|++++|+..|..+.... .|+...+..|..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445666778888888877654321 1233445677788899999999998887754 56777777777777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
.+|.++-... +.++--...|+..-.+.|+-.+-..+-+.+... ..---+|.+.....-.+++|+++|.+.+..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8887765442 233333445556666667666655555444322 233345555555666789999999998875
Q ss_pred CCCCHHHHHHHH-HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 172 VKPNEITFIAIL-SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 172 ~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.|.-...+.-+ -.|.+..-++-+.++++.-.. .++.++...+......
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAKNLKACNL 229 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 34555555433 345577778888888888775 3344444444444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00017 Score=69.11 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=116.4
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3445666666666666666666666655543 33322 222333344444444433333 1 12
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
.......++.-...+...+.. .+..++..+..+|-+.|+.++|..+|+++++.. +-|....|.+...|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222222222222222221 122355566677777777777777777777665 33556666666666666 77777
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL- 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 273 (372)
.+++.++... |...+++.++.+++.++ ...|+. ++.-.++.+++...
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d---------------~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDD---------------FDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCccc---------------chHHHHHHHHHHhhh
Confidence 7777666632 44555666667666666 222321 12222233333221
Q ss_pred C-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 274 E-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 274 ~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+ ..-..++.-+-..|...++|+++..+++.+.+..-.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 1 112234555667788888999999999988765443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=64.80 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA-ILSACCH 188 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~ 188 (372)
+++.+..+.+..++..|++++....+. +....+.+..+|....++..|-..|+++-.. .|...-|.. -..++-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344455556666777777777655433 3456667777777888888888888887664 455444432 2345567
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID--LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
.+.+..|.++...|.+. ++...-..-+. ...+.+++..+..++++.+-+.+..+.........+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 78888888888888741 22221111122 2336788899999999986566777777777777889999999999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCce
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGC 315 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 315 (372)
|+.+.+.+--.|..-..+..+..+.|+++.|++...++.++|++..|..
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999997755666666677788899999999999999999999977754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0002 Score=62.96 Aligned_cols=248 Identities=12% Similarity=0.012 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH-------
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA------- 115 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 115 (372)
+..+.+...+..++..|++.+....+.. -+..-++....++...|.+..+...-....+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5667777888888999999999888753 44444556667788888888877777776666522 2222332
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVEL 194 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 194 (372)
+..+|.+.++++.|+..|.+...+... -....+....+++++......-. .|.. .-...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence 334566677888888888875432111 12223334455555555544433 2332 122223556778899999
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
|...|.+++++ .+.|...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|++..+
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999964 3667899999999999999999998876665 44454 34566666677788899999999999999
Q ss_pred hCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 273 LEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 273 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.+|.+......+.++.........-.++.+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 999887776666666665433444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.7e-05 Score=56.98 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALI 117 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 117 (372)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 3556666666666665542 122 12223344555666666666666666666542221 12233355
Q ss_pred HHHHhcCCHHHHHHHHHhcccC--CcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
.++...|++++|+..++....+ ....+.....+|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666666666666666554332 123444555566666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00088 Score=53.52 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=132.9
Q ss_pred CCCccHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 53 MDQPNEAITLFRRMQVE---N-VKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~---~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
..+.++.++++..+... | ..++..+ |..++-+....|+.+.|...++.+...- |.+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777776542 3 4555553 4456667777888889999998888764 555555444455566778999
Q ss_pred HHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 128 KALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 128 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988764 3456777777777788888888888887776 567888999999999999999999999999883
Q ss_pred hcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCCC
Q 017414 205 RYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~-~~~~ 242 (372)
--|.++..+..+.+.+...| +..-+.+.|.+. .+.|
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 22334455566666665554 455677788776 4444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=47.81 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
+||+++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.7e-05 Score=57.44 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
...+...|++++|...|+.. ...|+. .....+...+...|++++|...++... ..+..+..+..++.+|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCC
Confidence 34444555555555555544 111222 122233444455555555555553321 112233344555555555555
Q ss_pred chhHHHHHH
Q 017414 294 WNESGKIRK 302 (372)
Q Consensus 294 ~~~a~~~~~ 302 (372)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=47.00 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 175 (372)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-06 Score=46.94 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00015 Score=68.38 Aligned_cols=178 Identities=11% Similarity=-0.059 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 126 IGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
...|+..|-+..+.|+ .+|..|...|+..-+...|.+.|++..+.+ ..+........+.|.+..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544444333 356666666666666666666666665543 223445555666666666666666653222
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.++.....-...|....-.|...++..+|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211000001122223333455566666666666555 4444 55566666666666666666666666666666655444
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-..........|.+.+|...+...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444455566666666655544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-06 Score=58.46 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 226 GYLQEAEKLLRRM-PFEA---NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 226 g~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555554 1111 233333345555555555555555555 4344444444444555555555555555555
Q ss_pred H
Q 017414 302 K 302 (372)
Q Consensus 302 ~ 302 (372)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 4
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-05 Score=55.38 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=55.6
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLA 252 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~ 252 (372)
+..+...+.+.|++++|...|..+.....-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555556666666666666654311111 1234445566666666666666666655 22222 334555555
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
++...|+.+.|...++++.+..|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666666666666666666666655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=45.95 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKP 174 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 174 (372)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-05 Score=53.40 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...++...+..|.++.++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 3334 33556667777777888888888888888888777777888888888888
Q ss_pred CchhHHHHHHHHHh
Q 017414 293 RWNESGKIRKVMRD 306 (372)
Q Consensus 293 ~~~~a~~~~~~m~~ 306 (372)
+++.|...+.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-05 Score=63.77 Aligned_cols=257 Identities=9% Similarity=-0.016 Sum_probs=163.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
.......+.+..++..|+..+....+.. +-+..-|..-+..+...++++++.--.+.-++.. +.....+.-.-.++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 4445566777888889999998888864 2345556666666777777777665544444321 1112223333444444
Q ss_pred cCCHHHHHHHHHh---------------ccc-----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 017414 123 SGKIGKALQVFEN---------------MKN-----KSVITWTTM-IAGLALHGLGREALDMFSRMERARVKPNEITFIA 181 (372)
Q Consensus 123 ~g~~~~A~~~~~~---------------~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 181 (372)
.++..+|.+.++. +.. |....|..+ ..++.-.|++++|.++--..++.+. .+ .+..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al 206 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEAL 206 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHH
Confidence 4444444443331 111 111223222 2356678899999888777776531 12 2222
Q ss_pred HHH--HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHH-------------HHHHHHhcCCHHHHHHHHhhC-C-----C
Q 017414 182 ILS--ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC-------------MIDLLGRAGYLQEAEKLLRRM-P-----F 240 (372)
Q Consensus 182 l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~~-~-----~ 240 (372)
.++ ++--.++.+.|...|++.+ .+.|+-..-.. -..-..+.|++.+|.+.|.+. + .
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 332 3335678888999998888 44555322111 122345789999999999887 3 3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.|+...|.....+..+.|+..+|+.-.+++.+++|.-...|..-+.++...++|++|.+-+++....
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667777778888999999999999999999877778888888999999999999988877544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0047 Score=58.04 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=141.7
Q ss_pred HHhcCCHHHHHHHHhccCC--CChhhHHHHHHH--HHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 19 YAKVGDLNNARALFELMTE--KNVISWTTLIAG--YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
....+++.+|......+.+ |+. .|...+.+ ..+.|+.++|..+++.....+. -|..|...+-.+|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 3467889999998888776 433 33333333 4688999999988887766543 3888999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcccCCcchHHHHHHHHHhcCCh---------hHHH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK----ALQVFENMKNKSVITWTTMIAGLALHGLG---------REAL 161 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~a~ 161 (372)
..+|++..+. -|+......+..+|.+.+++.+ |.++++...+.--.-|+.+--.+...... .-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999886 4557666778888888887654 56666655544444454432222222222 2355
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHH-HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 162 DMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 162 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.++.+.+.+ ..-+..-...-...+...|.+++|+.++. ...+. -.+-+...-+.-++.+...+++.+..++-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5666666544 22222222233344567788999999984 44432 33334444456678888889998888877776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=55.46 Aligned_cols=96 Identities=16% Similarity=0.023 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC---cchHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAIL 284 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 284 (372)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999988 33343 3466778889999999999999999999988764 4578889
Q ss_pred HHHHHHcCCchhHHHHHHHHHhCC
Q 017414 285 SNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 285 ~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+.++.+.|++++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00071 Score=57.33 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=108.5
Q ss_pred CHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 017414 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
++++|..+|+ .....|...|++++|.+.|.+.... +-+.+ ...|.....++.+ .++++|...+
T Consensus 30 ~~e~Aa~~y~-----------~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYE-----------KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred CHHHHHHHHH-----------HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHH
Confidence 5666666643 3556666667777777776665332 11111 1223333333433 3666666666
Q ss_pred HHHHH----cCCCCc--hhHHHHHHHHHHhc-CCHHHHHHHHHhccc----CC-----cchHHHHHHHHHhcCChhHHHH
Q 017414 99 NYIEQ----YGLNTI--VPLNNALIDMYAKS-GKIGKALQVFENMKN----KS-----VITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 99 ~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
++..+ .| .++ ...+..+...|... |++++|.+.|++..+ .+ ..++..+...+.+.|++++|.+
T Consensus 98 ~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65553 22 222 23455566667666 777777777776542 11 1345566677777788888888
Q ss_pred HHHHHHHcCCC-----CCHH-HHHHHHHHhcccCchHHHHHHHHHhHHh-cCCCcC--HHHHHHHHHHHHh--cCCHHHH
Q 017414 163 MFSRMERARVK-----PNEI-TFIAILSACCHVGLVELGRRYFNIMKSR-YGIEPK--IEQYGCMIDLLGR--AGYLQEA 231 (372)
Q Consensus 163 ~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~--~g~~~~a 231 (372)
+|++....... .+.. .+...+-.+...|+.-.|.+.+++.... .++..+ ......|+.++-. ...+.++
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88777654221 1111 2222233445567777777777776632 122222 2444556666643 3456677
Q ss_pred HHHHhhCCCCCCHHHHH
Q 017414 232 EKLLRRMPFEANAAIWG 248 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (372)
..-|+.+. +.|..--.
T Consensus 257 v~~~d~~~-~ld~w~~~ 272 (282)
T PF14938_consen 257 VAEYDSIS-RLDNWKTK 272 (282)
T ss_dssp CHHHTTSS----HHHHH
T ss_pred HHHHcccC-ccHHHHHH
Confidence 77777763 33444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=64.22 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 261 (372)
..+...|+++.|...|+++.+ .-+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556777777777777774 22334566677777777778888887777776 4444 4556777777777888888
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+|...|+++++++|.++.+...+..+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888888877766655544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-05 Score=51.03 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-CchhHHHHHHHHHh
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-RWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 306 (372)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..++.++...| ++++|.+.+++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999999999999999999 79999998887654
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0056 Score=57.57 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=150.6
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 128 (372)
...+++.+|++...++.+. .|+.. |..++.+ +.+.|..++|..+++.....+. .|..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 4567899999999998875 35544 2333443 5688999999988888776653 378888999999999999999
Q ss_pred HHHHHHhcccC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----------chHHHH
Q 017414 129 ALQVFENMKNK--SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----------LVELGR 196 (372)
Q Consensus 129 A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a~ 196 (372)
|..+|++..+. +......+..+|.+.+.+.+-.+.--++-+. .+-....|-.+++.....- -..-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999999864 4445556677888888776544443333332 3334555556665554321 134566
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh-hC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR-RM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+.++.+.++.|---+..-.......+...|++++|.+++. .. ...+ +...-+.-+..+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 7777777653311122222233445567889999999983 33 2222 333444566678888999999999999999
Q ss_pred hCCCC
Q 017414 273 LEPHN 277 (372)
Q Consensus 273 ~~p~~ 277 (372)
.++++
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 99877
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=59.62 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=98.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.+|-.++....+.+..+.|..+|.+.++.+ .........+++.. ...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367778888888888999999999988543 22333333444433 3356788899999999974 4567788888999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+...|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4899999999999999999999999999887644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.9e-05 Score=66.49 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
-...+...|++++|+++|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 355667889999999999998 4455 56778888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 017414 296 ESGKIRKVMRDM 307 (372)
Q Consensus 296 ~a~~~~~~m~~~ 307 (372)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.9e-05 Score=51.12 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
+..+...+...|++++|+..+++..+.. +.+...+..+..++...++++.|...++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344445555555555555555554432 2222344444455555555555555555555443 2233344444555555
Q ss_pred cCCHHHHHHHHHhc
Q 017414 123 SGKIGKALQVFENM 136 (372)
Q Consensus 123 ~g~~~~A~~~~~~~ 136 (372)
.|++++|...+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 55555555554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=55.82 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445678888888899999999999998887533222 3567788888899999999999999888764 3456666777
Q ss_pred HHHHHhcCCHHHHHHH
Q 017414 117 IDMYAKSGKIGKALQV 132 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~ 132 (372)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788777775554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=56.51 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666777777777777777766 22222 3467777778888888888888888888888887777878888
Q ss_pred HHHHcCC
Q 017414 287 IYAILGR 293 (372)
Q Consensus 287 ~~~~~g~ 293 (372)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877666
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.9e-05 Score=63.32 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=87.1
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChh
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 261 (372)
-..+.+++.+|...|.+++ .+.| |...|..-..+|++.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567899999999999999 4454 5666777789999999999999877766 66664 568999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
+|++.|+++++++|++......|-.+-.+.+..+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998865566655555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00025 Score=52.84 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
......+...+...|++++|..+|+.+.... +-+..-|..|..++...|++++|+..|....... +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344444555555666666666666555532 2234444555555556666666666666655554 3344445555556
Q ss_pred HHhcCCHHHHHHHHHh
Q 017414 120 YAKSGKIGKALQVFEN 135 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~ 135 (372)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666666666555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=51.61 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH
Q 017414 154 HGLGREALDMFSRMERARVK-PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 231 (372)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...+ +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666654321 1233333355566666666666666655 2 1112 223333445556666666666
Q ss_pred HHHHhh
Q 017414 232 EKLLRR 237 (372)
Q Consensus 232 ~~~~~~ 237 (372)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00049 Score=49.44 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=64.4
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT---IVPLNNALIDMY 120 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 120 (372)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45556677888888888888887775543 2355567777778888888888888777652 21 223333344566
Q ss_pred HhcCCHHHHHHHHHhcccCCcchHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNKSVITWTTMIA 149 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 149 (372)
...|+.++|.+.+-...-++...|.--|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777765544333333333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=54.15 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
.....-+...|++++|..+|+-+ -.. -+..-|..|..++...++++.|...|..+..+.++||.++...+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455566899999999999988 222 3566788888899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHh
Q 017414 294 WNESGKIRKVMRD 306 (372)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (372)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00043 Score=53.73 Aligned_cols=81 Identities=6% Similarity=-0.094 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
...|..++..+...|++++|+..|++.......| ...++..+..++...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777888888888888888888887653222 23467778888888888888888888887653 33345555566
Q ss_pred HHHH
Q 017414 118 DMYA 121 (372)
Q Consensus 118 ~~~~ 121 (372)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 6665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.4e-05 Score=49.08 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+...+...|++++|...|+.+.+..|.++..+..++.++...|++++|...|++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777777777777777777777776644
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00021 Score=55.52 Aligned_cols=94 Identities=11% Similarity=-0.076 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
....|..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|...++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777888889999999988887 33332 347788888999999999999999999999888888888888
Q ss_pred HHHH-------HcCCchhHHHHHHHH
Q 017414 286 NIYA-------ILGRWNESGKIRKVM 304 (372)
Q Consensus 286 ~~~~-------~~g~~~~a~~~~~~m 304 (372)
..+. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 888888777666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00096 Score=61.18 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..|..+.-.....|++++|...++++.+++| +...|..++..+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444555555555555555555 3445555555555555555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=42.17 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVEN 70 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 70 (372)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=41.66 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0047 Score=47.11 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---CHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIW 247 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~ 247 (372)
..|+...-..|..+..+.|+..+|...|++.... -+.-|......+.++....+++..|...++.+ ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3577777777888899999999999999998852 34556777778888888899999999998887 2222 33445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+.+.+...|.+..|+..|+.+....| ++.........+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677888899999999999999999877 555666677788889988877765554433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.6e-05 Score=47.77 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
+...+...|++++|...|+++ ...| +...+..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888887 4455 556677777888888888888888888888888764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00032 Score=48.62 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCC--------hHHHHHHHHHHHHcCCCCchhH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAALSACAQLGA--------VELGEWIHNYIEQYGLNTIVPL 112 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 112 (372)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- .-....+|+.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667778999999999999999999 8999999999988776542 3456778999999999999999
Q ss_pred HHHHHHHHHh
Q 017414 113 NNALIDMYAK 122 (372)
Q Consensus 113 ~~~l~~~~~~ 122 (372)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0056 Score=50.45 Aligned_cols=184 Identities=10% Similarity=-0.009 Sum_probs=106.3
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-H---HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-A---MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 113 (372)
.+...+-.....+...|++++|++.|+++.... |+.. . ...++.++.+.++++.|...+++..+........-+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 355555556666788999999999999998853 4332 2 235668889999999999999999986422222222
Q ss_pred HHHHHHHH--hcC---------------CH---HHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 114 NALIDMYA--KSG---------------KI---GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 114 ~~l~~~~~--~~g---------------~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
...+.+.+ ..+ +. .+|+..|+++.+ -|=.+.-..+|...+..+...
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-----------~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-----------GYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-----------HCcCChhHHHHHHHHHHHHHH---
Confidence 22233222 111 22 345555555543 222233344444444433321
Q ss_pred CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 174 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.-...+ .+.+.|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+....+
T Consensus 174 la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011111 355567777777777777777776543322 2345556667777777777777665443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=63.01 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC-C-----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE-K-----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
+......+++.+....+++.+..++.+.+. | -..+..++++.|.+.|..++++.++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444455566667777777778887777664 2 1235568888888888888888888887788888888888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
+..+.+.|++..|.++...|...+.-.+..++..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=58.08 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 226 (372)
..-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+... .+.|. ..+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 445778999999999999999873 4467777788899999999999999888887 44554 578999999999999
Q ss_pred CHHHHHHHHhhC-CCCCCHHHHHHHHH-HHHHcCChh
Q 017414 227 YLQEAEKLLRRM-PFEANAAIWGSLLA-ASNIYGDVE 261 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~ 261 (372)
++++|.+.|++. .+.|+-.+|..=+. +-.+.+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999997 88887777665554 333444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=60.52 Aligned_cols=256 Identities=11% Similarity=0.016 Sum_probs=152.4
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHH--H--cCCC-CchhHHHHHHHH
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIE--Q--YGLN-TIVPLNNALIDM 119 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 119 (372)
-+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++...=+ . .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4677888888888888888766 2333 345666677777778888877653211 1 1100 011222335555
Q ss_pred HHhcCCHHHHHHHHHhcc----c-----CCcchHHHHHHHHHhcCC--------------------hhHHHHHHHHHHH-
Q 017414 120 YAKSGKIGKALQVFENMK----N-----KSVITWTTMIAGLALHGL--------------------GREALDMFSRMER- 169 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 169 (372)
+--.|.+++|.-+-.+-. + ....++..+...|...|+ ++.|.++|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 666677777765433221 1 022345555666654442 1223333332111
Q ss_pred ---cCCC-CCHHHHHHHHHHhcccCchHHHHHHHHH---hHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC---
Q 017414 170 ---ARVK-PNEITFIAILSACCHVGLVELGRRYFNI---MKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM--- 238 (372)
Q Consensus 170 ---~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~--- 238 (372)
.|-. .-...|..|...|.-.|+++.|+...+. +.+++|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 1123556666666677888888766543 2223343332 356777888888899999998888764
Q ss_pred ----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----hC--CCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 ----P-FEANAAIWGSLLAASNIYGDVELGECALQHLIK----LE--PHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 ----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+ .........+|.+.|.-..+++.|+.++.+-+. ++ .....++..|+.+|...|..++|+...+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 223455677788888888888999888776554 22 2245688889999999999998887666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.001 Score=54.83 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=87.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
+-|...|..|...|...|+++.|..-|.+. .+. ++...+..+..++... ....++..+++++.+.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557899999999999999999999999987 333 3566666776655433 34578999999999999999999999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCccCC
Q 017414 284 LSNIYAILGRWNESGKIRKVMRDMGVKKMP 313 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 313 (372)
|...+...|++.+|...|+.|.+..-...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999886554333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00046 Score=47.87 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcccC--------chHHHHHHHHHhHHhcCCCcCHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARV-KPNEITFIAILSACCHVG--------LVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666667999999999999999998 889999999988876542 244567888888865 89999999
Q ss_pred HHHHHHHHHh
Q 017414 215 YGCMIDLLGR 224 (372)
Q Consensus 215 ~~~li~~~~~ 224 (372)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.019 Score=49.20 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYG 258 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~ 258 (372)
.++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +.+-+++. ..+| +...-..+..+....|
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 4455556666666666665532 344433222 222233332 11111111 2233 3444555555666667
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH-cCCchhHHHHHHHHH
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAI-LGRWNESGKIRKVMR 305 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 305 (372)
++..|..--+.+....|. ...|..|.+.-.. .|+-.++...+.+-.
T Consensus 344 e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 344 EFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred chHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 776666666666666663 3466666665543 377777777665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0072 Score=46.14 Aligned_cols=99 Identities=15% Similarity=-0.026 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTT 146 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 146 (372)
-|+...-..|..+....|+..+|...|++....-+..|..+...+..+....++...|...++++.+- ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444455555555555555555555554434444555555555555555555555555554321 2233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 017414 147 MIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
+...+...|++.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445555555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.1e-05 Score=48.80 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
...|++++|+..++++.+..|.++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788888888888888888887888888888888888888888776543
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.022 Score=48.88 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=82.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (372)
+.+..+.-+...|+...|.++-.+. + -|+..-|-..+.+|+..+++++-.++... +.++.-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566667778877777665544 3 37888888999999999999988877654 23456788899999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988888776 12356778889999999998765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0094 Score=53.06 Aligned_cols=148 Identities=10% Similarity=0.041 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT-IVPLNNALIDMYAKSGKIGKALQVFE 134 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 134 (372)
.+.....+++++..-..--+.+|..+++...+..-++.|..+|.++.+.+..+ .+.+.++++..|+. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555555555543211122345566666666666667777777776665555 45555666665553 55666666666
Q ss_pred hccc--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 135 NMKN--KSVI-TWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 135 ~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
--.+ +|.. --...+.-+...++-..+..+|++....++.|+ ...|..++..-+.-|++..+.++-++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4332 2322 234455555666666666666666666544443 24666666666666666666666665554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0041 Score=52.74 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=72.7
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKA 129 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 129 (372)
++++|..+|.+.- +.|...+++++|...|.+.... +-+. -...|.....+|.+. ++++|
T Consensus 30 ~~e~Aa~~y~~Aa---------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKAA---------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHHHHHHH---------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 5666766666552 3444455555555555544321 1000 112233333333333 55555
Q ss_pred HHHHHhccc-------CC--cchHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhcccCchH
Q 017414 130 LQVFENMKN-------KS--VITWTTMIAGLALH-GLGREALDMFSRMERA----RVKPN--EITFIAILSACCHVGLVE 193 (372)
Q Consensus 130 ~~~~~~~~~-------~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~ 193 (372)
...+++..+ ++ ...+..+...|... |++++|++.|++..+. + .+. ..++..+...+.+.|+++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 555544321 00 11233344555555 5666666666655432 1 111 223444555566666666
Q ss_pred HHHHHHHHhHHhcC----CCcCH-HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 194 LGRRYFNIMKSRYG----IEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 194 ~a~~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|.++|+++....- ...+. ..+...+-++...|+...|...+++.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666553210 01111 11222333444556666666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00078 Score=56.91 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2233334333333 23345555566666666655 355556666666666
Q ss_pred HhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 121 AKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
...|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665532 1235555666556666666666666665553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0072 Score=52.34 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC-------CcchHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFI 180 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 180 (372)
.+...++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......++..++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445666788888999999999988764 22233345556667 888999999988866665667777887
Q ss_pred HHHHHhcc---------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH----HHHHHHH---hh-C-----
Q 017414 181 AILSACCH---------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL----QEAEKLL---RR-M----- 238 (372)
Q Consensus 181 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~---~~-~----- 238 (372)
.+...|-. ....++|...|.+.- .+.|+..+--.++..+...|.. .+..++- .. +
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77665532 223566776666554 3344432222222223233321 1222222 11 1
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 239 -PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 239 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.-..+-..+..++.++.-.|+.++|.+.++++.++.|+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 12245556667777777778888888888887777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.019 Score=47.30 Aligned_cols=177 Identities=12% Similarity=0.025 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHHhcccCCc----chHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN---NALIDMYAKSGKIGKALQVFENMKNKSV----ITWTT 146 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ 146 (372)
+...+-.....+...|++++|...|+.+.... |-+.... -.++.+|.+.+++++|...|++..+..+ ..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445556677899999999999999864 2223222 4577899999999999999999875322 23333
Q ss_pred HHHHHHh--cC---------------C---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhc
Q 017414 147 MIAGLAL--HG---------------L---GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 206 (372)
Q Consensus 147 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 206 (372)
.+.+.+. .+ + ..+|++.|++++ .-|=.+.-..+|...+..+..+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH-
Confidence 3333321 11 1 123444444444 4444444456666555555432
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
=...-..+.+-|.+.|.+..|..-++.+ +..| .......++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225678899999998888877776 3333 44567778889999999999988876654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00077 Score=59.43 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 185 (372)
....+++.+....+++.+..++.+.... -..+..+++..|...|..++++.+++.=...|+-||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3333444444444444444444444321 1123345555555555555555555555555555555555555555
Q ss_pred hcccCchHHHHHHHHHhHH
Q 017414 186 CCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~ 204 (372)
+.+.|++..|.++...|..
T Consensus 148 fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HhhcccHHHHHHHHHHHHH
Confidence 5555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=47.01 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..+...++++.|.++++.+...+|.++..+...+.++...|++++|.+.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888877644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00078 Score=52.78 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHhcc--CCCChhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 017414 28 ARALFELM--TEKNVISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----------- 89 (372)
Q Consensus 28 A~~~~~~~--~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 89 (372)
-...|+.. ...+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|+..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 446788888888888754 667777778889999999999999999999875432
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
+-+-|+.++++|...|+-||..++..|++.+++.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34678889999999999999999999999886654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0042 Score=57.09 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW 247 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~ 247 (372)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 445565555555556788888888887773 3467777777777888888888888877775 445554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=46.13 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCC
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG-DVELGECALQHLIKLEP 275 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 275 (372)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556777777788888888888888776 3344 4556777777788887 68888888888887776
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0038 Score=44.89 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHH
Q 017414 146 TMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLL 222 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~ 222 (372)
.+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345666777888888888888877765544 23455566777778888888888887775421100 222333344566
Q ss_pred HhcCCHHHHHHHHhhC
Q 017414 223 GRAGYLQEAEKLLRRM 238 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~ 238 (372)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6778888877766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00052 Score=43.98 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=28.4
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW 247 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~ 247 (372)
.|++++|..+|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 45555555555555532 1224444555555555555555555555555 334443333
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=54.04 Aligned_cols=82 Identities=9% Similarity=-0.024 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHcCCc
Q 017414 223 GRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRW 294 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 294 (372)
.+.|++++|...|+.+ ...|+. ..+..+..+|...|++++|...|+.+.+..|+++ .++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555444 222221 2334444455555555555555555555444432 2333334445555555
Q ss_pred hhHHHHHHHH
Q 017414 295 NESGKIRKVM 304 (372)
Q Consensus 295 ~~a~~~~~~m 304 (372)
++|..+|++.
T Consensus 234 ~~A~~~~~~v 243 (263)
T PRK10803 234 AKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=50.26 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred cCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----------------CchHHHH
Q 017414 138 NKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV----------------GLVELGR 196 (372)
Q Consensus 138 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 196 (372)
..+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666653 466777788888899999999999999999887552 2346677
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
+++++|.. +|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 78888874 4888888888887777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.035 Score=44.47 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH--
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENV--KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA-- 121 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 121 (372)
....+...|++.+|++.|+++..... +--......++.++.+.|+++.|...++..++.-......-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566666666666666655311 11122344455566666666666666666655421111111111111111
Q ss_pred hc-----------CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 122 KS-----------GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 122 ~~-----------g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
.. +...+|... +..++.-|=.+....+|...+..+... =...-..+...|.+.|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~-----------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE-----------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH-----------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HhCccchhcccChHHHHHHHHH-----------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 10 011122222 233334444444444454444443321 0011112455566777
Q ss_pred chHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHH
Q 017414 191 LVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a 231 (372)
.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777654322221 13345556666666666533
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.014 Score=47.25 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH-----HHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL-----NNALI 117 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~ 117 (372)
-+.++..+.-.|.+.-...++.+..+...+.++.....|.+...+.||.+.|..+|+...+..-..+..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4555666666677777777777777765455666666777777777777777777776664322333222 22333
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 118 DMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..|.-.+++..|...|.++... |+..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455566777777777666543 3344444444455567777777777777765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0057 Score=49.03 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
+....-.....+.+.|++.+|...|+.+.. |+ ..+.-.++.++.+.|+++.|...+++..+.-.......+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 444444567778899999999999999985 43 245667888999999999999999998875211111222222
Q ss_pred HHHHHcc-------------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHH
Q 017414 82 LSACAQL-------------GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMI 148 (372)
Q Consensus 82 ~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 148 (372)
+.+.+.. +....|...|+.+++. |=.+.-..+|...+..+...=...--.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 1223445555555544 33333344444444333221111222356
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcccCchHHHH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPN----EITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 6788889999999999888876 233 235567778888888777443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00095 Score=50.42 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH-----hCCCccCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMP 313 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 313 (372)
....++..+...|+++.|...++.+...+|.+...|..++.+|...|+...|.+.|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 345566777889999999999999999999999999999999999999999999999884 45776644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.044 Score=50.12 Aligned_cols=239 Identities=14% Similarity=0.129 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC-C----------CChhhHHHHHHHHHhCCC--ccHHHHHHHHHHhCCCCCCHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMT-E----------KNVISWTTLIAGYAQMDQ--PNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~----------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.+.+=+.-|...|.+++|.++----. . .+...++..=.+|.+-.+ +-+.+.-++++++.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 34455566778888888866521100 0 122334444455555443 3344555566777777777653
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--------------CCcch
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--------------KSVIT 143 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~ 143 (372)
+...|+-.|.+.+|.++|.+ .|.+ +--+.+|...+.+|.|.++...-.. .++.-
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 34556777888888887753 3422 2345555555556666665543221 12222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH------HHHcCC---CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSR------MERARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
-.+....+...|+.++|..+.-+ +.+.+- ..+..+...+...+-+...+..|-++|..|-+.
T Consensus 706 PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 706 PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 22344555667777777665321 111111 123345555555556667777788888777632
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHH-----------HHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRMP-FEANAAI-----------WGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
..+++.....+++++|..+.++.| ..||+.. |...-.+|.+.|+-.+|.++++++.
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 346777888888888888888873 3344321 1112234455555555555555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.046 Score=50.42 Aligned_cols=128 Identities=16% Similarity=0.033 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHccCChHHH
Q 017414 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL----------SACAQLGAVELG 94 (372)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~----------~~~~~~~~~~~a 94 (372)
+++|.+..+. .|.+..|..|.......-.++.|...|-+...- |.......|- ..-+--|.+++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4444444433 356677888887777777777777777655431 2211111111 111224677777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C---cchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--S---VITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
+++|-.+-+.. .-+..+.+.|+|-...++++.--.. | ..+|+.+...+.....|++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776655442 3466677778887777777653321 1 24677777777777777777777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=49.43 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC----CHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSL 250 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~----~~~~~~~l 250 (372)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4555555555667899999999999986532111 1356778889999999999999999888 2223 24455556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 251 LAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
...+...|+.+.|...++.+.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778889999999999999999999765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=42.54 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
..|.+.+++++|.++++++ ...| +...|.....++...|++++|.+.++.+.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 4445 455666677788888888888888888888888665443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00031 Score=37.77 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=30.1
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
++++++++|+++.+|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.12 Score=48.21 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASN 255 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 255 (372)
..+.+--+.-+...|+-.+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... ++.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 3344445555667788888888777766 4788888888899999999999888887763 2345777889999
Q ss_pred HcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 256 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
+.|+.++|.+++-+...+ .....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 999999998876554221 1577889999999998886543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00079 Score=38.77 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
.++..+..+|...|++++|+++++++.+..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988887754
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.028 Score=45.51 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=96.8
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEANAAIWGS 249 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~ 249 (372)
..+.++..+...|.+.-....++++.++ .-+.++.....|++.-.+.|+.+.|...|++. +.+-+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3445666666777888888888888864 44556777778888888889998888888854 22222233333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
....+...+++..|...+.++...+|.++...+.-.-+....|+...|.+.++.|.....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344566778888888899999998888888888878888888999999999998876543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=44.79 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW-GSLLAAS 254 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~-~~l~~~~ 254 (372)
.|...+.+..+..-++.|..+|.++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| ...+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455666666667788889999998865 5 6778888888888775 45777888888765 334555444 4566667
Q ss_pred HHcCChhHHHHHHHHHHHhCC--CCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEP--HNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
...++-+.|..+|+...+.-. .-...|..++.--..-|+...+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 778888888888886655221 124578888877778888877776666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.034 Score=46.08 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc-C--CHHHHHHHHhhC-CCCC-CHHHH
Q 017414 173 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA-G--YLQEAEKLLRRM-PFEA-NAAIW 247 (372)
Q Consensus 173 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g--~~~~a~~~~~~~-~~~~-~~~~~ 247 (372)
+-|...|..|..+|...|+++.|..-|....+ -.++++..+..+..++... | ...++.++|+++ ...| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45778888899999999999999999988884 3345566677777666543 2 356788888887 5555 45556
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
..|...+...|++.+|...++.|.+..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHH
Confidence 6666788899999999999999999877654 444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0031 Score=55.39 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566677777777777777777777764 555653 24677777777777777777777777775321 221111
Q ss_pred H--HHHHcCCchhHHHHHHHHHhCCCc
Q 017414 286 N--IYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 286 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
. .+....+.++..++++.....|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112223334556666666666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.008 Score=43.68 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 017414 171 RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 221 (372)
Q Consensus 171 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 221 (372)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777788888887888888888888887777777777777777653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.21 Score=46.35 Aligned_cols=202 Identities=13% Similarity=0.039 Sum_probs=120.2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHH----------HHhCCCccHHHHHHHHHHhCCCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAG----------YAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
+.|.+..|..+.......-.++-|+..|-++.. +.+..-.-|-.. -+--|++++|.++|-.|-+..
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 468889999999999999999999999988775 333221111111 122488999999988776543
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA 149 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 149 (372)
..+....+.|++-.+.++++ ..|-..+ ...++.+.+.+.....|++|.+.|..-.. -...+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 23455566777766555443 2221222 35677778888888888888887765321 122445
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
++.+..++++-+.+-..+ +-+....-.+..++.+.|.-++|.+.|-+.. .|. .-+..|...+++.
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHH
Confidence 555555555544443332 2333445556666677777777666554332 121 2344555666666
Q ss_pred HHHHHHhhC
Q 017414 230 EAEKLLRRM 238 (372)
Q Consensus 230 ~a~~~~~~~ 238 (372)
+|.++.++.
T Consensus 896 ~avelaq~~ 904 (1189)
T KOG2041|consen 896 EAVELAQRF 904 (1189)
T ss_pred HHHHHHHhc
Confidence 666666655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00098 Score=44.07 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVE----NV-KPD-EIAMLAALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
|+.+...|...|++++|+..|++..+. |. .|+ ..++..+..++...|++++|.+.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444321 10 011 2334444455555555555555554443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.02 Score=49.40 Aligned_cols=256 Identities=13% Similarity=0.063 Sum_probs=157.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCh-------hhHHHHHHHHHhCCCccHHHHHHHHHH--h--CCCCC-CHHHHHHHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNV-------ISWTTLIAGYAQMDQPNEAITLFRRMQ--V--ENVKP-DEIAMLAALS 83 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~--~--~~~~p-~~~~~~~l~~ 83 (372)
..-+++.|+...-+.+|+...+... ..|..|..+|.-.+++.+|+++...=+ . .|-+. ....-..|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4557899999999999998887433 346666667777777888877643211 0 01110 1112223444
Q ss_pred HHHccCChHHHHHHHH----HHHHcC--CCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhcc
Q 017414 84 ACAQLGAVELGEWIHN----YIEQYG--LNTIVPLNNALIDMYAKSGK--------------------IGKALQVFENMK 137 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 137 (372)
.+--.|.+++|.-.-. ...+.| +......|| |...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN-lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYN-LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh-hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4445566666554322 222222 111223343 6777766553 233444443211
Q ss_pred c---------CCcchHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 138 N---------KSVITWTTMIAGLALHGLGREALDMFSRMER----ARVK-PNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 138 ~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+ .-..+|..|...|.-.|+++.|+..-+.-+. -|-+ .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 1224677777777788999999876654332 2222 123467778888888999999999888654
Q ss_pred H---hcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 204 S---RYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEANAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 204 ~---~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
. +.| -.....+..+|...|.-...+++|+..+.+- + .--....+.+|..++...|..++|..+.+...
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 111 1224466677888888888899998877654 1 12245678889999999999999998888776
Q ss_pred H
Q 017414 272 K 272 (372)
Q Consensus 272 ~ 272 (372)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 6
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=44.09 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHHHHHH---HHHhcCCHHHHHHHHhccCC-------CC------------------hhhHHHHHHHHHhCCCccHHH
Q 017414 9 YKFWNTMVA---GYAKVGDLNNARALFELMTE-------KN------------------VISWTTLIAGYAQMDQPNEAI 60 (372)
Q Consensus 9 ~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~-------~~------------------~~~~~~l~~~~~~~~~~~~A~ 60 (372)
...|..++. .....++.+.+...+..+.. ++ ......++..+...|++++|+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 444555533 33556788888877776653 11 012344555666778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----HcCCCCchhHH
Q 017414 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE-----QYGLNTIVPLN 113 (372)
Q Consensus 61 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 113 (372)
.+.+++.... +.+...|..++.++...|+...|.+.|+.+. +.|++|+..+-
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888887753 4466677788888888888888888877765 34777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=43.25 Aligned_cols=261 Identities=14% Similarity=0.094 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
+|..+...-...|+.+-|..+++.=+.+.. =+-.+.+.|+.+.| +.+..+.| .||.. |..++..-.+..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~-----qVplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~~~l~- 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRASK-----QVPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLKRKLS- 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChHH-----HHHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHHHhCC-
Confidence 577888888999999999999876444322 23345566666666 44566655 44433 334444332222
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
.. +++ .+... .|.. ..+...|++..+.+.-..+|.+-.+....+...+-.++.. .+.++-...+....+.
T Consensus 71 ~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~ 140 (319)
T PF04840_consen 71 LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKL 140 (319)
T ss_pred HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 11 122 23322 2221 2345556666666666666654332222222223333322 3444433333333321
Q ss_pred -CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 017414 171 -RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249 (372)
Q Consensus 171 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (372)
+-..+......++.-. -+-.++-+.+.++++......+.+..+.-+...|+...|.++-.+..+ |+..-|..
T Consensus 141 y~~~k~~~f~~~~~e~q------~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~l 213 (319)
T PF04840_consen 141 YSKSKNDAFEAKLIEEQ------IKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWL 213 (319)
T ss_pred HHhcchhHHHHHHHHHH------HHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 0011111111221111 122233333444434333333455567777889999999999999874 78999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.+.+++..+++++...+... ..+|.-|.-.+.+|.+.|+..+|..+...+
T Consensus 214 ki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 214 KIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999988877542 235678999999999999999999998874
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.041 Score=40.52 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
-.....+.|++++|.+.|+.+ +..| ....-..++.++.+.++++.|...+++.++++|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344455677777777777776 2222 3345566777777788888888888888887776654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=49.99 Aligned_cols=94 Identities=18% Similarity=0.111 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
.++..+.-+|.+.+++.+|+..-.+. .. ++|......=..++...|+++.|...|++++++.|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999988776 33 45777777778899999999999999999999999999888999888887
Q ss_pred cCCchhH-HHHHHHHHh
Q 017414 291 LGRWNES-GKIRKVMRD 306 (372)
Q Consensus 291 ~g~~~~a-~~~~~~m~~ 306 (372)
..+..+. .++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7766665 568888854
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0021 Score=42.47 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh----CCC---CcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKL----EPH---NSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+++.+...|...|++++|+..++++.++ ++. ...++..++.++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777777666652 221 13456667777777777777777776543
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.26 Score=42.55 Aligned_cols=249 Identities=15% Similarity=0.088 Sum_probs=162.5
Q ss_pred hHHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCchhH--HHH
Q 017414 42 SWTTLIAGYAQ--MDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQLGAVELGEWIHNYIEQYGLNTIVPL--NNA 115 (372)
Q Consensus 42 ~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 115 (372)
-|.+|-.++.. .|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 46666666655 46677777666555432 45566666666644 34569999999999999863 32221 233
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhc--
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEI--TFIAILSACC-- 187 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~-- 187 (372)
|.-.--+.|..+.|.++-++.-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33444578899999988887654 2 23578889999999999999999998876543 344432 2222332221
Q ss_pred -ccCchHHHHHHHHHhHHhcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 017414 188 -HVGLVELGRRYFNIMKSRYGIEPKIEQYG-CMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 188 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
-..+...|...-.+.. ++.|+...-. .-..++.+.|+..++-.+++.+ ...|.+..+..++. .+.|+ .+.
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gd--ta~ 312 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGD--TAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCC--cHH
Confidence 1234556666555554 5667654332 3457889999999999999998 66777766554443 34444 333
Q ss_pred HHHH---HHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 265 CALQ---HLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 265 ~~~~---~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.-++ ++..+.|++......+..+-...|++..|..--
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 3333 444577988888888899988899888776533
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.14 Score=46.79 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHH
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNE------ITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
..+++...=.|+-+.+++.+.+..+.+---.. ..|..++..++. ..+.+.|.+++..+..+ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 34455556679999999999887664311122 234444444433 45778899999999965 456555
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHhhC-CCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH-HH
Q 017414 215 YGC-MIDLLGRAGYLQEAEKLLRRM-PFE-----ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL-SN 286 (372)
Q Consensus 215 ~~~-li~~~~~~g~~~~a~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 286 (372)
|.. -.+.+...|++++|.+.|++. ..+ .....+.-+...+....++++|...+..+.+....+..+|..+ +.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 543 356777899999999999976 111 1233455566778889999999999999999887777676555 45
Q ss_pred HHHHcCCc-------hhHHHHHHHHHh
Q 017414 287 IYAILGRW-------NESGKIRKVMRD 306 (372)
Q Consensus 287 ~~~~~g~~-------~~a~~~~~~m~~ 306 (372)
++...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56778888 888888887743
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=44.70 Aligned_cols=152 Identities=13% Similarity=-0.053 Sum_probs=77.9
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchH---------------HHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW---------------TTM 147 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~l 147 (372)
.++...|+.++|.++-...++.. +.+....-.-..++.-.++.++|...|++..+.|+... ..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34455666666666665555543 22222222222334445666777777776665433221 112
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHH
Q 017414 148 IAGLALHGLGREALDMFSRMERA---RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLG 223 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~ 223 (372)
..-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--+... .+.+. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 22345566677777777666653 233444555555566666677776666666555 22222 122222233444
Q ss_pred hcCCHHHHHHHHhhC
Q 017414 224 RAGYLQEAEKLLRRM 238 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~ 238 (372)
..+++++|.+-|++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.12 Score=37.23 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.-.|..++..++..+..... +..-++-+|.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 345677777888877776542 3344554544444444555555666665542221 13445555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
....+-.++ .+.......+..+...|+-+...+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555543 345556667778888999999999999998766667888999999999999999999999999998885
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.29 Score=41.39 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHhccCC------CCh------hhHHHHHHHHHhCC-CccHHHHHHHHHHhC--------CCCCCH---
Q 017414 20 AKVGDLNNARALFELMTE------KNV------ISWTTLIAGYAQMD-QPNEAITLFRRMQVE--------NVKPDE--- 75 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~------~~~------~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~--------~~~p~~--- 75 (372)
.++|+++.|..++.+... |+. ..||.-.. ..+.+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 468999999999988764 221 13444444 44455 888887777665432 123332
Q ss_pred --HHHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHH
Q 017414 76 --IAMLAALSACAQLGAVE---LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTM 147 (372)
Q Consensus 76 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 147 (372)
.++..++.++...+..+ +|..+++.+.+. .+..+.++..-++.+.+.++.+.+.+++.+|... ....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 35666777777777655 444555555433 2333555555677777788888888888888753 22455555
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHcCCCCCH
Q 017414 148 IAGLAL--HGLGREALDMFSRMERARVKPNE 176 (372)
Q Consensus 148 ~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~ 176 (372)
+..+.. ......|...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 554422 23345566666666655445444
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.021 Score=49.17 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=82.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCC------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTE------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.+.|.+.|++..|..-|++... .-..+++.|..++.+.+++..|++..++.+..+ +++.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567888888888888777432 112357777788888888888888888888765 556667
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA-LQVFENMK 137 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 137 (372)
...-..++...|+++.|+..|+++.+.. |.|..+-+.|+.+-.+....... .++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7677778888888888888888888764 44555555666555554444332 45555553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.025 Score=41.10 Aligned_cols=99 Identities=7% Similarity=0.067 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
|..++.++|.++++.|+++....+.+..-..++.. -...+. .-......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 56778888888888888888888877653311100 000000 12233456777777777777777
Q ss_pred cCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHh
Q 017414 88 LGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 122 (372)
.+++..|.++.+...+. +++.+..+|..|+.-...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777766643 555566777777665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.052 Score=40.97 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=37.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---ccCCcchHHHHHHHHHhcCChhHHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM---KNKSVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
..|++++|..+|+.+.-.+ +-+...+..|..++-..+++++|...|... ...|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4445555555554444433 223334444444444455555555544422 123444444444555555555555555
Q ss_pred HHHHHH
Q 017414 164 FSRMER 169 (372)
Q Consensus 164 ~~~~~~ 169 (372)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 554444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=48.69 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 69 (372)
.|.+...|+.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788888888888888888888877654 432 34778888888888888888888888764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.23 Score=43.25 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=102.3
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCchhH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN---VKPDEIAMLAALSACAQ---LGAVELGEWIHNYIEQYGLNTIVPL 112 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (372)
+..+.-.++-+|....+++..+++++.+.... +.-+...-....-++.+ .|+.++|..++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44444466666888899999999998887641 11122222233445555 7889999999988666656788888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHhcccCCcchHHH--HHHHHHhcCCh----hHHHHHH---HH-HHHcC--
Q 017414 113 NNALIDMYAK---------SGKIGKALQVFENMKNKSVITWTT--MIAGLALHGLG----REALDMF---SR-MERAR-- 171 (372)
Q Consensus 113 ~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~--l~~~~~~~~~~----~~a~~~~---~~-~~~~~-- 171 (372)
+..++..|.. ...+++|+..|.+.-+.+...|+- +...+...|.. .+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 8888776643 224788999888765433322221 11122223321 1222222 11 22233
Q ss_pred -CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 172 -VKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 172 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
-..+--.+..++.++.-.|+.++|.+..+.+.+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 234455667888888899999999999999984
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.12 Score=38.03 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHH--Hc
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASN--IY 257 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~--~~ 257 (372)
...+.|++++|.+.|+.+..++...+- ...-..++.+|.+.|++++|...+++. |..|+.. |...+.++. ..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH
Confidence 344567777777777777765433332 244455667777777777777766665 3333322 222222221 11
Q ss_pred C---------------ChhHHHHHHHHHHHhCCCCc
Q 017414 258 G---------------DVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 258 ~---------------~~~~a~~~~~~~~~~~p~~~ 278 (372)
. ....|..-|+.+++..|++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 14566677777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.072 Score=44.85 Aligned_cols=156 Identities=12% Similarity=-0.016 Sum_probs=112.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH----HHHHHHHHhcCC
Q 017414 152 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY----GCMIDLLGRAGY 227 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 227 (372)
-..|++.+|-..++++++. .+.|...++..=.+|...|+...-...++++.. ...++...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4577888888888888876 455777777777888889998888888888874 334444322 334445567899
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC----cchHHHHHHHHHHcCCchhHHHHH
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN----SGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
+++|++.-++. .++| |.....++...+-..|++.++.+++.+-...-... ...|-.....+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887 5444 77788888888888999999998887766533221 224555666777789999999999
Q ss_pred HHHHhCCCc
Q 017414 302 KVMRDMGVK 310 (372)
Q Consensus 302 ~~m~~~g~~ 310 (372)
+.=.-..+.
T Consensus 271 D~ei~k~l~ 279 (491)
T KOG2610|consen 271 DREIWKRLE 279 (491)
T ss_pred HHHHHHHhh
Confidence 865433343
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.17 Score=43.15 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=23.0
Q ss_pred HhCCCccHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVE--NVKPDEIAMLAALSACAQLGAVELGEW 96 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 96 (372)
....+..+|+..|.+-+.. ...-.-.+|..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666655542 011112344455555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.22 Score=42.06 Aligned_cols=182 Identities=9% Similarity=-0.000 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhcccCch
Q 017414 120 YAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI----AILSACCHVGLV 192 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~ 192 (372)
....|+..+|-..++++.+ .|..+++.-=.++...|+.+.-...++++... ..|+...|. .+.-.+...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456888888888888875 36677887788899999999999999888765 234433332 333445578999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCChhHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN------AAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
++|++.-++..+ --+.|.-.-.++...+-..|++.++.++..+-...-+ ..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999888873 1133455566778888889999999999887621111 11222233344566899999999
Q ss_pred HHHHHH--hCCCCcch---HHHHHHHHHHcCCchhHHHHHHHH
Q 017414 267 LQHLIK--LEPHNSGN---YAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 267 ~~~~~~--~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+.-+- +..++..+ |..+-........+.+-..+-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 986553 66777633 333344444555555555444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.62 Score=37.49 Aligned_cols=222 Identities=16% Similarity=0.071 Sum_probs=144.9
Q ss_pred CCCccHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 53 MDQPNEAITLFRRMQVENVK-PDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666666554321 12456666777777788888877777776652 23445566666777777778888888
Q ss_pred HHHHhcccC--Cc-chHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 131 QVFENMKNK--SV-ITWTTMIA-GLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 131 ~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
..+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888876642 21 23333333 67888888888888888755321 12233444444446677888888888888884
Q ss_pred hcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 205 RYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 205 ~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
. .+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.......|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 233 3566777788888888888888888777 44444 444555555555667788888888888887775
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.77 Score=38.28 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
.....|++.+|..+|+........ +......++..|...|+.+.|..++..+..+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777766655322 233444566666777777777777766653210 111111122334444444444
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCCcchHHHHHHHHHHcCCchh
Q 017414 230 EAEKLLRRMPFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 230 ~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
+..++-.+..-.| |...-..+...+...|+.+.|...+-.+.+.+ -.+..+-..|+..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 4444444442234 55555556666666677776666655555532 3355566666666666664443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.44 Score=35.47 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 223 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (372)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....++. . ++......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 4455666666667777777777776665 245566777777776543 3333333331 0 11222234666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 224 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777652 22233333333 666777666654 234456666665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.092 Score=43.04 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGI-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLL 251 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~ 251 (372)
.|+.-+.. .+.|++..|...|....+++.- .-....+..|..++...|++++|..+|..+ |..| -+..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 3445567777666666653211 012234455666666666666666666655 2223 224455555
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+....|+.+.|...|+++.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 566666666666666666666666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.64 Score=42.98 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCHH--HHHHHHhccCCCChhh-HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHH-----HHHH
Q 017414 12 WNTMVAGYAKVGDLN--NARALFELMTEKNVIS-WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAM-----LAAL 82 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~-----~~l~ 82 (372)
++..=++|.+.++.. +.+.-++++.+..... --.+...++-.|++.+|-++|.+- |.... ...| ....
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHH
Confidence 455556777766544 3334445555433211 122345566666777776666432 22111 0111 1234
Q ss_pred HHHHccCChHHHHHHHHHHHHc--CC-CCchhHHHHHHHHHHhcCCHHHHHHH-------------HHhcccCCcchHHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQY--GL-NTIVPLNNALIDMYAKSGKIGKALQV-------------FENMKNKSVITWTT 146 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~ 146 (372)
+-+...|+.++-..+.++-.+- ++ +|. .-..++..+|+.++|..+ -+++...+..+...
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 4455556555544444332211 11 222 234555566666666554 33344445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH-----------H
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ-----------Y 215 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~ 215 (372)
+...+.+...+.-|-++|.+|-+. ..++......+++++|..+-+... .+.|++.. +
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhhhhhH
Confidence 666677777788888888877532 346777889999999999888776 34555421 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.---.+|.++|+-.+|.++++++
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHh
Confidence 11223555666666666666665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.085 Score=43.33 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHhccC--CCChhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 017414 28 ARALFELMT--EKNVISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----------- 89 (372)
Q Consensus 28 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 89 (372)
.++.|.... ++|-.+|-+.+..+... +..+-.-..+..|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 46777888888777654 556666677788999999999999999999876543
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
+-+-++.++++|...|+.||..+-..|++++.+.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224578899999999999999999999999987664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.4 Score=43.32 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=98.9
Q ss_pred HHHHhCCCccHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 48 AGYAQMDQPNEAITLFR--RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
....-.++++++.+... ++.. .+ .....+.++.-+.+.|..+.|.++-.. + ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 34455677888766664 2221 12 244567778888888888888766432 2 124566778888
Q ss_pred HHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 126 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877665 556888999999999999999888887542 344555566678877777777776643
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
|- ++....++.-.|+.++..+++.+.+
T Consensus 403 -~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 21 3445556666788888888887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.75 Score=37.01 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=157.2
Q ss_pred cCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHHHHHHHhcCChhHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
.+....+...+......... .....+......+...+++..+...+..... .....+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666665554322 1356677788889999999999998887653 34456777777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HhcccCchHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 162 DMFSRMERARVKPNEITFIAILS-ACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.+.........+. ........ .+...|+++.|...+...... .. ......+......+...++.+.+...+.+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999887644432 22222233 688999999999999998631 11 123344445555577889999999999887
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 239 -PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 239 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...++ ...+..+...+...++.+.+...+.......|.....+..+...+...+.++.+...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444 6778888888999999999999999999988875556667777777777789998888776543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.89 Score=40.60 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=89.8
Q ss_pred ccHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 56 PNEAITLFRRMQVE-NVKPD-EIAMLAALSACAQL---------GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 56 ~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|.+.-+...+.+ +.|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778887721 23444 34444444333221 23456667777777776 667777777777777788
Q ss_pred CHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 125 KIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFSRMERARV-KPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 125 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
+++.|...|++... || ..+|........-.|+.++|.+.+++..+... +-........+..|+..+ .+.|..+|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 88999999987764 33 34666666667778999999998888666421 112233444455666654 566666654
Q ss_pred H
Q 017414 201 I 201 (372)
Q Consensus 201 ~ 201 (372)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 4
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.26 Score=40.49 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=43.3
Q ss_pred hcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHH
Q 017414 153 LHGLGREALDMFSRMERARVK--PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 229 (372)
+.|++..|...|...++.... -....+..|..++...|+++.|..+|..+.++++-.|.. ..+-.|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444456666655555554210 011233345555555566666655555555544333332 44555555555555666
Q ss_pred HHHHHHhhC
Q 017414 230 EAEKLLRRM 238 (372)
Q Consensus 230 ~a~~~~~~~ 238 (372)
+|...|+++
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 665555555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=42.22 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHhcc--cCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC------------
Q 017414 130 LQVFENMK--NKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHVG------------ 190 (372)
Q Consensus 130 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 190 (372)
...|.... ++|..+|.+.+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 4566677777776653 3556767777888999999999999999998876543
Q ss_pred ----chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 191 ----LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 191 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
+-+-++.++++|. .+|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3355789999998 569999999999999999887753
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.2 Score=40.79 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC-CCCch-----hHHHHHHHHHHh----cCCHHHHHHHHHhccc--CCcchHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYG-LNTIV-----PLNNALIDMYAK----SGKIGKALQVFENMKN--KSVITWTTM 147 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~l 147 (372)
.++....=.||.+.+.+.+....+.+ +.-.. -.|+..+..++. ....+.|.++++.+.+ |+...|...
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 44555555566666666665554422 11111 112222222222 3355666666666655 444433322
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHH
Q 017414 148 -IAGLALHGLGREALDMFSRMERAR---VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLL 222 (372)
Q Consensus 148 -~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~ 222 (372)
...+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.+.... +...|.-+. -++
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHH
Confidence 234455666666666666544211 0111223333444455566666666666666643222 222232222 233
Q ss_pred HhcCCH-------HHHHHHHhhC
Q 017414 223 GRAGYL-------QEAEKLLRRM 238 (372)
Q Consensus 223 ~~~g~~-------~~a~~~~~~~ 238 (372)
...|+. ++|.++|.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 345555 6666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.58 Score=35.65 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=90.3
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-H--H
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP-L--N 113 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~ 113 (372)
.+...|..-+. +.+.+..++|+..|..+.+.|...-++ ..........+.|+...|...|+++-.....|-+. - -
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34456666665 467788899999999988876543322 22234455678888999999998887754334322 0 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKNKS----VITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 175 (372)
.--.-.+...|.++....-.+-+..+. ...-.+|.-+-.+.|++.+|.+.|.++......|-
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 111234667888888888887776432 13456677777889999999999998876544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.3 Score=39.61 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=101.9
Q ss_pred chH--HHHHHHHHhcC-----ChhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhc---------ccCchHHHHHHHHHhH
Q 017414 142 ITW--TTMIAGLALHG-----LGREALDMFSRMER-ARVKPNE-ITFIAILSACC---------HVGLVELGRRYFNIMK 203 (372)
Q Consensus 142 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 203 (372)
..| ..++.+..... ..+.|+.+|.+... ....|+- ..|..+...+. ......+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 55555544422 24678888888872 2245553 33333332221 1234556677777777
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+ --+.|+.....+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.++++.++.|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 23456777777888888888899999999998 666754 4555555667788999999999999999999754333
Q ss_pred H--HHHHHHHHcCCchhHHHHHH
Q 017414 282 A--ILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 282 ~--~l~~~~~~~g~~~~a~~~~~ 302 (372)
. ..+..|.. ...+.|+++|-
T Consensus 410 ~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcC-CchhhhHHHHh
Confidence 2 22334444 45777887663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.3 Score=40.73 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhH----HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTEKNVISW----TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
..-++.+.+..-++-|+.+-+.-.. +.... ..-.+.+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4567777788888888887765443 22222 23334456789999999888776543 2332 245556666
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcc--hHHHHHHHHHhcCChhHHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI--TWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
.....-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 67777788888888888654 4444679999999999999988888766 2222 245566777777777777766554
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
... .......++ -..+++++|.+++..+.
T Consensus 489 ~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 489 FKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred hcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 332 233344433 45688888888887664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1 Score=36.48 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-C------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH----hCCCCcchHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-P------FEANA-AIWGSLLAASNIYGDVELGECALQHLIK----LEPHNSGNYA 282 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~ 282 (372)
+....+.+.+..++++|-..+.+- . .-++. ..|...|-.+.-..++..|+..++...+ .++.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 333444555555665555444433 1 11221 2234444445555677777777776554 3355556666
Q ss_pred HHHHHHHHcCCchhHHHH
Q 017414 283 ILSNIYAILGRWNESGKI 300 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~ 300 (372)
.|+.+|- .|+.+++..+
T Consensus 233 nLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhc-cCCHHHHHHH
Confidence 6666553 4455555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.1 Score=43.47 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|++.|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555666666666666666666666666666666666666666666666666654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.061 Score=28.48 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
.|..+...+...|++++|++.++++.++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777778888888888888888777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.74 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555444 24444555555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.044 Score=29.15 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+|..+..++...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888887774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.5 Score=39.96 Aligned_cols=283 Identities=13% Similarity=0.032 Sum_probs=165.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCCCc--cHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQP--NEAITLFRRMQVENVKPDEIAMLAALSACA 86 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 86 (372)
-..+++-+...+.+..|+++-..+..|. ...|......+.+..+. +++++...+=..... -....|..+.+...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 3567778888888888888888877664 45667777777766432 233333333222222 23345666666667
Q ss_pred ccCChHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-Cc--------------chHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLN----TIVPLNNALIDMYAKSGKIGKALQVFENMKNK-SV--------------ITWTTM 147 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--------------~~~~~l 147 (372)
..|+.+.|..+++.=...+.. .+..-+..-+.-+...|+.+-...++-.+.+. +. ..|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 788888888776643332211 11222334455566677777666666555431 11 111111
Q ss_pred HH--------HHHhcCChhHHHHHHH--HHHH----cCCCCCHHHHHHHHHHhcccCc----------hHHHHHHHHHhH
Q 017414 148 IA--------GLALHGLGREALDMFS--RMER----ARVKPNEITFIAILSACCHVGL----------VELGRRYFNIMK 203 (372)
Q Consensus 148 ~~--------~~~~~~~~~~a~~~~~--~~~~----~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~ 203 (372)
+. .+.+.++-.++...|. ...+ .+..|+. .....+|.+... ..+-+.+.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222222222221 1000 1222332 223333443322 223345556666
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
.+++..-..-+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++.+++-+.. . .|.-|.-
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---k--sPIGy~P 749 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---K--SPIGYLP 749 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---C--CCCCchh
Confidence 666655555556666777888999999999999986 478888888899999999988877665443 2 2456777
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
....|.+.|+.++|.+++.+.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHhcccHHHHhhhhhcc
Confidence 888999999999999998755
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.29 Score=35.27 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=23.0
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
....|+.+.|++.|.+... -.+.....||.-.+++.-+|+.++|++=+++
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHH
Confidence 3444555555555554442 2223344455555555445555544444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.6 Score=36.96 Aligned_cols=242 Identities=14% Similarity=0.017 Sum_probs=147.4
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHc
Q 017414 29 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV----ELGEWIHNYIEQY 104 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~ 104 (372)
..+++.+..+|.......+..+...|. .++...+..+.. .+|...-...+.++...|+. +++...+..+...
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 344455566788777778888877775 444455555544 34556666677777777764 4566666655333
Q ss_pred CCCCchhHHHHHHHHHHhcCCH-----HHHHHHHHh-cccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 017414 105 GLNTIVPLNNALIDMYAKSGKI-----GKALQVFEN-MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 178 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 178 (372)
.++..+....+.++...+.. ..+...+.. +..++..+-...+.++.+.++ .+++..+-.+... ++...
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 45666665566666555421 233444433 344566677777788877776 4567777666653 34444
Q ss_pred HHHHHHHhcccC-chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 017414 179 FIAILSACCHVG-LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 179 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (372)
-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|...-.-.+.+.+. .++ .....+.++...
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhc
Confidence 444555555543 23456666666663 3566667778888888888544444445554 233 345677788888
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
|.. +|...+..+.+..| |..+-...+.++.
T Consensus 249 g~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred CCH-hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 885 68888888887677 5555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.4 Score=36.13 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKS------VITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAIL 183 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~ 183 (372)
..|+. +..-.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+..+++....- -.|| ..|..-|
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 34443 333456688888888888776532 2344556667778888888888888877653 2333 2233333
Q ss_pred HHhc---cc----Cch---HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 017414 184 SACC---HV----GLV---ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253 (372)
Q Consensus 184 ~~~~---~~----~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~ 253 (372)
.+.+ .. .+. ..|..-|+.+..++ +-+..+ .+|..-+..+... -...=..+.+-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya--------------~dA~~~i~~~~d~-LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYA--------------PDAKARIVKLNDA-LAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcch--------------hhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3322 11 222 23334444444321 111111 1111111111000 00001234556
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSG---NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|.+.|.+-.|..-++.+++.-|..+. .+..+..+|...|-.++|.+.-+-+..+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 78888888888888888886665443 4556677888889888888877766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.2 Score=38.46 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+|.-.-+..+++.-+++-.+.++ +.||-.+.-.++ +--......++++++++..+.| +.. +........
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-E~~------lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-EAS------LGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-HHh------hchhhhhhc
Confidence 445555566666666666666665 345543322222 1223445778888888877654 100 000000000
Q ss_pred CHHHHHHHHHhcccCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 KIGKALQVFENMKNKS----VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
. -..++....++ ..+-..+..+..+.|+.++|++.+++|.+....- .......|+.++...+.+.++..++
T Consensus 243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 00111111222 2333456667778888888888888887653211 2335556778888888888888888
Q ss_pred HHhH
Q 017414 200 NIMK 203 (372)
Q Consensus 200 ~~~~ 203 (372)
.+--
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7764
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.81 Score=33.18 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
...-+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344566777888888888888887753 3667777778888888888888888888888765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.1 Score=38.00 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=105.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 218 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 218 (372)
-..+|...+....+..-.+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... ++.++.-.+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777888888888999999999999988 67788888999886654 7888999999987753 33333444566
Q ss_pred HHHHHhcCCHHHHHHHHhhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM--PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.-+...++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788899999999999965 22333 5678899988899999999999988888888754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.8 Score=36.22 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc----chHHHHHHHHHhcCChh
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV----ITWTTMIAGLALHGLGR 158 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 158 (372)
......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..+..... ....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556777778888777777664 33455556677888888888888888877763211 11222334444444444
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 159 EALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44443333332 23 44444455566666667666665444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.68 Score=35.31 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHhhC--CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 224 RAGYLQEAEKLLRRM--PFEANAA-IWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
.+|-+++.....+.+ .-+|-.. .-..|.-+-.+.|++..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 455555555555554 1112111 122233344455555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.34 Score=34.95 Aligned_cols=88 Identities=16% Similarity=-0.028 Sum_probs=51.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHHhc
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRA 225 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 225 (372)
-+++..|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|..=+++..+-.|-. +. ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3556677777777777776665 23455677777777777777777777777666432322 21 1222223344455
Q ss_pred CCHHHHHHHHhhC
Q 017414 226 GYLQEAEKLLRRM 238 (372)
Q Consensus 226 g~~~~a~~~~~~~ 238 (372)
|+.+.|..=|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 5666665555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.4 Score=41.29 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
.++.-.+.|-+++|+.++.-=.+.-...|.+....+.....+++|--.|+..-+ ..-.+.+|...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333334444445554444322222223444444445555566666555553221 11234555666666666
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..+..++.. +-..-..+-..|+..+...+++-+|-++..+.
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 666665542 11111222245566666666666666666555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.4 Score=37.24 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=127.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC---CC-CCHHHHHHHHHHHHcc
Q 017414 15 MVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN---VK-PDEIAMLAALSACAQL 88 (372)
Q Consensus 15 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~-p~~~~~~~l~~~~~~~ 88 (372)
.+.+.-+.|+|+...+....... ++...|.++... +.++++++....+++...- .. .....|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35566788999997777777765 344455555543 7888888888887765421 00 0111222222222222
Q ss_pred CChHHHHHHHHHHHHc-------------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcccCCcchHHHH
Q 017414 89 GAVELGEWIHNYIEQY-------------------GLNTIVPLNNALIDMYAKSGKIGKALQVFE--NMKNKSVITWTTM 147 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~l 147 (372)
..+.+..++.+..... ...++..++..++..-. .++. .+......+|..+
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~ 152 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKF 152 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHH
Confidence 2222222222221111 11233333333222110 0111 1112234577788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHH
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLL 222 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 222 (372)
+..+.+.|+++.|...+..+...+..+ .......-++..-..|+..+|...++...+. .+... ......+...+
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISNAELKSGL 231 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccHHHHhhcc
Confidence 888888888888888888877643111 2223333445556678888888888777752 11111 11111111110
Q ss_pred HhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 223 GRAGYLQEAEKLL-RRMPFEANAAIWGSLLAASNIY------GDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 223 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.. ..+.....- .......-...+..+..-+... +..+.+...|+.+.+..|.....|..++..+.+.
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 232 LE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00 000000000 0000000112223333333333 7778888999999998888777777777666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.2 Score=36.77 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc----cCC-CC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC-CCCCC---HH
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFEL----MTE-KN----VISWTTLIAGYAQMDQPNEAITLFRRMQVE-NVKPD---EI 76 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~----~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~---~~ 76 (372)
.+|..+.++.++.|.+++++..--. ..+ .| -.+|-.+.+++-+.-++.+++.+-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3566666677777776666543211 111 11 234555666665556666666655444332 22221 12
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC---C--CchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CCcc--
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGL---N--TIVPLNNALIDMYAKSGKIGKALQVFENMKN-------KSVI-- 142 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-- 142 (372)
...++..++...+.++++.+.|+...+... . ....++..|...|.+..++++|.-+..+..+ .|..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233466777777788888888887765321 1 1346778888888888888887766554331 2322
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 143 ----TWTTMIAGLALHGLGREALDMFSRMER----ARVKPN-EITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 143 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
....|.-++...|+.-+|.+..++..+ .|-+|. ......+.+.|...|+.+.|+.-|+.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344566677777777777766543 332222 2344566777888888888887777665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.086 Score=30.12 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 69 (372)
++..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555566665555555553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.80 E-value=3 Score=37.67 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHH--HHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-F-EANAA--IWGSLLAAS 254 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~-~~~~~--~~~~l~~~~ 254 (372)
-..+...+.+.|+.++|.+.++++.+.............|+.++...+.+.++..++.+-. + -|.+. .|+..+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3456666778999999999999998653322244677889999999999999999998872 2 24433 344443333
Q ss_pred HHcCC---------------hhHHHHHHHHHHHhCCCCc
Q 017414 255 NIYGD---------------VELGECALQHLIKLEPHNS 278 (372)
Q Consensus 255 ~~~~~---------------~~~a~~~~~~~~~~~p~~~ 278 (372)
...++ -..|.+.++++.+.+|.-+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 32332 1245577888888777533
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.65 Score=42.02 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
..-.+.++..+-+.|..+.|+.+-.. + ..-.....+.|+.+.|.++.++ .++...|..|.....+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 34488899999999999999988543 1 2234455678888888765432 24677888999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
|+++-|+..+.+... +..|+-.|.-.|+.++-.++.+.....+. ++....++...|+.++..+++.+
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888876543 45677778888888777777766554332 45555566667888888777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.16 Score=39.54 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
+.+++.++.|+.-..++++++|....+...-..+|.+...+++|+.-|+++
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334444444444444444444433333333334444444444444444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.034 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNAR 29 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~ 29 (372)
++.|.|..+|+.+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567888888888888888888888875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.1 Score=34.77 Aligned_cols=26 Identities=4% Similarity=0.082 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
.|.--..+|....++++|-..+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445555556666666666555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.1 Score=36.46 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC----CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEP----HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
....+|..++..+.+.|.++.|...+..+....+ ..+.+...-++.+...|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566788899999999999999999999888552 2466777888999999999999999888876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.5 Score=34.25 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH--HH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG--CM 218 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 218 (372)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+..++......+++..+.....++..-..-..+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445555556666666666666665554333322 2334455555556666666655555543211111111111 11
Q ss_pred H--HHHHhcCCHHHHHHHHhhC
Q 017414 219 I--DLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 219 i--~~~~~~g~~~~a~~~~~~~ 238 (372)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1223456777777766665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.2 Score=35.22 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 90 AVELGEWIHNYIEQYGLNTIVP---LNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
.+++|..-|.+..+...+.... ....++..+.+.|++++....|.++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5556666666555532222211 1223344555555555555554444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.09 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m 66 (372)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.6 Score=37.29 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhcccC-------CcchHHHHHHHHHhcCC-
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAK--SG----KIGKALQVFENMKNK-------SVITWTTMIAGLALHGL- 156 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~- 156 (372)
++....+++.+.+.|+.-+..+|.+..-.... .. ...+|.++|+.|++. +-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888887777666543333222 11 356788888888863 23355555443 3333
Q ss_pred ---hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCc--hHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 157 ---GREALDMFSRMERARVKPNE--ITFIAILSACCHVGL--VELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 157 ---~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.+.++.+|+.+.+.|...+. .....++..+..... ..++.++++.+.++ ++++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 36677888888887766543 333344433333222 44778888888876 88888877766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.14 E-value=4.7 Score=37.20 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=71.6
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCCh---hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
++.+++..+|+.-++.-.+.|+++.+.-+|+++.-|-+ ..|---+......|+.+-|-.++....+.-++-...+..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 45667777788888888888888888888877765422 233333333334477777776666555543322222222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.-...+-..|+++.|..+++.+.+.- +.-..+-..-+..-.+.|+.+.+.
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 22233344567777777777777653 222222233344455556655555
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.8 Score=40.18 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcC
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 155 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (372)
...-+..+.+...++.|..+- ...+..++ ........+.+.+.|++++|...|-+-..-- --..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHHHHhcCHH
Confidence 344555566666666665543 23333332 2333444556667788888877776543211 1123455566666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... + |.. -|. ...+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHH
Confidence 667777777777777754 44455567778888888877776666554 2 221 133 2355666666777777777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 235 LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
-.+.+. +...... .+-..+++++|.+++..+
T Consensus 486 A~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 766642 2333333 334567788887776544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.9 Score=34.31 Aligned_cols=55 Identities=20% Similarity=0.107 Sum_probs=32.7
Q ss_pred HHhCCCccHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 017414 50 YAQMDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 50 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
-.+.|++++|.+.|+.+.... -+-...+...++-++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 446677777777777766541 1123344455556666667777777666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.15 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.86 Score=38.11 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCchhHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-----YGLNTIVPLNNAL 116 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 116 (372)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777653 44667777777777777777777777776654 4666666555443
Q ss_pred HH
Q 017414 117 ID 118 (372)
Q Consensus 117 ~~ 118 (372)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.2 Score=34.79 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCCcch----H
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGN----Y 281 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~ 281 (372)
..+..+.+.|++.|+.+.|.+.|.++ ...+ -...+..++......+++..+...+.++...- +.+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 55677888888888888888888887 1122 23456777888888888888888888877622 222211 1
Q ss_pred HHHHHHHHHcCCchhHHHHHHHH
Q 017414 282 AILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..-+..+...++|..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12233456678899888877543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.57 Score=32.12 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+-++.+.+.. ...|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34566777777778889999999999999999999999999999999865543 336666664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.63 Score=34.52 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 225 AGYLQEAEKLLRRM-PFEANAAIWGSL-LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
.++++++..++..+ -++|+..-...+ ...+...|++++|.++++.+.+-.+..+..-..+..++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555555 223322221111 1123455566666666666555444333333333334444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.69 Score=31.35 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777788888888999999999999999999999999999998865443 4446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.54 E-value=4.1 Score=34.50 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=13.9
Q ss_pred HhCCCccHHHHHHHHHHhC
Q 017414 51 AQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~ 69 (372)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4677888888888777653
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.22 Score=26.33 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
+|..+...+...|++++|...|+++.++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566667777777777777777777666
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.3 Score=39.17 Aligned_cols=150 Identities=17% Similarity=0.084 Sum_probs=101.8
Q ss_pred HhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
.-.|+++.|..++-.+.+ ...+.++.-+.+.|..++|+++ .+|...-. ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 345667777666655542 2344556666677777777654 23322211 22346788888888776
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 201 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 655 55668899999999999999999998863 256677777788887777677666666665554
Q ss_pred HHHHHHHHHHcCCchhHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
-..+|...|+++++.+++.+
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 33467788999999988854
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.81 Score=34.57 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 214 QYGCMIDLL---GRAGYLQEAEKLLRRM-PFEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 214 ~~~~li~~~---~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+.+.|+..+ .+.++.+++..++..+ -.+|.......+- ..+...|++.+|.++++.+.+..|..+..-..+..++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334444433 4567777777777777 3445444333322 2456778888888888887776666655555555555
Q ss_pred HHcCCch
Q 017414 289 AILGRWN 295 (372)
Q Consensus 289 ~~~g~~~ 295 (372)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 5555443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=8 Score=37.14 Aligned_cols=267 Identities=10% Similarity=-0.032 Sum_probs=133.2
Q ss_pred CHHHHHHHHhccCC-CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 101 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 101 (372)
..++...++++-.. |-. ..-......+.+.+++...+..+. . .+.+...-.....+....|+.++|......+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46666666666554 322 222333344455666666655221 1 1334444455666666777766665555555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHH------------------HHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHH
Q 017414 102 EQYGLNTIVPLNNALIDMYAKSGKIG------------------KALQVFENMKNKSVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~g~~~------------------~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
=..| ...+..++.+++.+.+.|.+. .|..+...+..........++..+ .++..+...
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~ 231 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETF 231 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHH
Confidence 4444 333445556666665555432 232222222110011111122211 112222221
Q ss_pred HHHHHHcCCCCCHH--H-HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 164 FSRMERARVKPNEI--T-FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 164 ~~~~~~~~~~p~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.. +.|+.. . ....+.-+ ...+.+.|..++.......++.+.. ..+..+.......+..++|.+.+...
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 111 122221 1 11122222 2345688888888775543443332 22334443444443356677777765
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 -PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+...+......-+......++++.+...+..+.........-..=+++++...|+.++|...|+...
T Consensus 306 ~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 306 IMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2223444455555555578888887777777655333455566777888777888888888888763
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.2 Score=31.85 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 60 ITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 60 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
.++.+-+.+.+++|+...+..++..+.+.|.+.... .+.+.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 344455556677777777777777777777655433 3334444444333222221111 1223333333333333
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
=...+..+++.+...|++-+|+++.+...... . .....++.+..+.+|...-..+++-..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22345556666777777777777766542221 1 112234445455555444444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.90 E-value=6.6 Score=35.10 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=76.5
Q ss_pred hcccCc-hHHHHHHHHHhHHhcCCCcCHHHHHHHH----HHHHhc---CCHHH---HHHHHhhCCCCC----CHHHHHHH
Q 017414 186 CCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMI----DLLGRA---GYLQE---AEKLLRRMPFEA----NAAIWGSL 250 (372)
Q Consensus 186 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~~---a~~~~~~~~~~~----~~~~~~~l 250 (372)
+-+.|. -++|.++++.+..- .+-|...-+.+. .+|.+. ..+.. -...+++.++.| +...-+.|
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 344454 77888888888742 122333333222 233321 22222 233444446555 34455555
Q ss_pred HHH--HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 251 LAA--SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 251 ~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..| +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 554 4678999999988888889999 8999999999999999999999999754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.13 Score=36.77 Aligned_cols=45 Identities=38% Similarity=0.581 Sum_probs=35.6
Q ss_pred ceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCCC
Q 017414 314 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370 (372)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~~ 370 (372)
+++|+.+ +.|++|+.+||+. ++...+...|+.|+.....++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e 46 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEE 46 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhh
Confidence 5677665 8999999999988 3335677889999998888877764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=4.5 Score=32.32 Aligned_cols=180 Identities=15% Similarity=0.044 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 19 YAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
|-..|-+.-|.-=|.+... |+ +.+||-|.-.+...|+++.|.+.|+...+....-+ .+...-.-++.-.|++..|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhH
Confidence 3344445555544544332 43 46788888888889999999999998887542222 22222222344567888887
Q ss_pred HHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHH-HHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 96 WIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
+-+...-+.. -.|-...|.-+. ...-+..+|.. +.++..+.|..-|..-|-.|.- |+.. ...+++++.+.. .
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~ 227 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-T 227 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-c
Confidence 7766666553 122222222222 22334555544 4455555554444443333321 1111 122333333221 1
Q ss_pred CC-------HHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 174 PN-------EITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 174 p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.+ ..||..+.+.+...|+.++|..+|+-....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 357888999999999999999999988854
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.24 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.43 E-value=19 Score=39.28 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
-...|....+.....|.++.|...+-.+.+.++ +..+...++.....|+...|+.++++......+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 346788888999999999999999888888774 468999999999999999999999988765544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.35 Score=41.03 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=75.8
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCC
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~ 259 (372)
..-|.+.|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..=.... .+. .=...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 346889999999999999888 3455 8888888899999999888776544443 211 112345555666667788
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhH
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 297 (372)
..+|.+-++.++++.|.+. .|-..+.......++
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 9999999999999999754 344444444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.2 Score=37.50 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=51.5
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666777777777777777665455566777777777777766666666551 111222345666666666
Q ss_pred HHHHHHHHHhcc
Q 017414 126 IGKALQVFENMK 137 (372)
Q Consensus 126 ~~~A~~~~~~~~ 137 (372)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.4 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=10.1
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
|..++.+.++++.+.++.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 334445555555555554444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.5 Score=32.99 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
......|...|.+.+|.++.++++.++|-+...+..|+..++..|+--.|.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344578899999999999999999999999999999999999999888888888774
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.48 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555666666555555554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.55 Score=24.36 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+..++...|++++|...|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555566666666666666665553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.37 E-value=5.3 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..+++.+...|++-+|+++.++.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34555666666666666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.31 E-value=11 Score=33.92 Aligned_cols=115 Identities=7% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHhcCCHHHHHHHHhccCC---CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHc
Q 017414 19 YAKVGDLNNARALFELMTE---KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQ 87 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~ 87 (372)
+-+++++.+|.++|.++-+ .++ ..-+-++++|... +.+..........+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 4466777777777776654 111 1233444555432 344444444444432 22 2233333333 335
Q ss_pred cCChHHHHHHHHHHHHc--CCCCc------------hhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 88 LGAVELGEWIHNYIEQY--GLNTI------------VPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.+++.+|.+.+..-.+. +..+. -..=+..++++...|++.+++.+++++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 56666666665544433 11111 1111334455566666666666665554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.11 E-value=5.1 Score=29.92 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=35.2
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-chHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-ITWTTMIAGLA 152 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~ 152 (372)
...++.+.+..++..+.-.. |.....-..-...+...|++++|..+|+++.+... ..|..-+.++|
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34566677777766666532 11222222234456667777777777777765432 24444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.10 E-value=5.9 Score=31.25 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=59.3
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcC
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYG 258 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~ 258 (372)
+...|++++|..-|..+.+- +++. ...|..-.-++.+.+.++.|+.-..+. .+.|+- .....-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45667777777777777742 2222 123333445666777777777655444 444422 22223344677778
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
.++.|+.-|+++.+.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888865544444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.44 Score=25.00 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555556666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=7 Score=31.32 Aligned_cols=177 Identities=11% Similarity=0.038 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcc-hHHHHHH--HHHhcCChhHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI-TWTTMIA--GLALHGLGREALDMFS 165 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~ 165 (372)
|-+..|.--|.+..... |.-+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=. ++.--|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33444444444444432 334677887877788888888888888887765543 2332222 2334677887777766
Q ss_pred HHHHcCC-CCCHHHHHHHHHHhcccCchHHHHH-HHHHhHHhcCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHhhCCCC-
Q 017414 166 RMERARV-KPNEITFIAILSACCHVGLVELGRR-YFNIMKSRYGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRMPFE- 241 (372)
Q Consensus 166 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~- 241 (372)
+.-+.+. .|=...|..+.. ..-++.+|.. +.++.. + .+..-|.. ++.-|...=..+.+.+-...-...
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 6665531 222223333322 2334555544 333333 2 23333332 223332222222222222221100
Q ss_pred -----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 242 -----ANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 242 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.-..||-.+..-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 123466667777778888888888888777654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.86 E-value=7.6 Score=31.49 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=33.0
Q ss_pred HHHHHHhc-CCHHHHHHHHhhC-----CCCCCHHHHHHHHH---HHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 218 MIDLLGRA-GYLQEAEKLLRRM-----PFEANAAIWGSLLA---ASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 218 li~~~~~~-g~~~~a~~~~~~~-----~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+...|-.. .++++|+..|++. +-+.+...-..++. --...+++.+|+.+|+++....-++
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444332 4566666666665 22222222222332 3356688999999999988754433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.66 E-value=2.4 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 356 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 356 (372)
...+..++.+.|++++|.+..+.+.+. .|+...+..+-..+.+.|+++|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778999999999999999988653 56666777777777788888874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.56 E-value=14 Score=34.20 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=66.6
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHH---HHHhhC-CCCCCHHH----HHHHHH-HHHHc
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAE---KLLRRM-PFEANAAI----WGSLLA-ASNIY 257 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~~-~~~~~~~~----~~~l~~-~~~~~ 257 (372)
..|++..|..+++.+.++ . |+. ..-..-+....+.|+.+.+. .++... ...-+... +....+ .+...
T Consensus 378 ~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 457888888888888864 2 443 22223344455677777777 444443 21222222 222233 34456
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++.+.|..++.++.+..|++...|..++......+.
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 888999999999999999998899999888777653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.7 Score=28.64 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-++... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555666666777888888888888888888888888888776331 22334454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.16 Score=37.95 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
++..+.+.+.++....+++.+...+...+...++.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677788888888899888776566788889999999999888888888773332 3334556666667777777
Q ss_pred HHHHHHHH
Q 017414 161 LDMFSRME 168 (372)
Q Consensus 161 ~~~~~~~~ 168 (372)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 76666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.87 E-value=5 Score=31.71 Aligned_cols=67 Identities=13% Similarity=-0.046 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCcchHHHHHHHHHhcCChhHH
Q 017414 93 LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
.|...|-.+...+.--++.....|+..|. ..+.+++..++.+.. +.|+..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444544443344444444444444 345555555555433 23455566666666666666555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.6 Score=36.73 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
+++++.++..=+.-|+-||..+++.++..+.+.+++..|.++...++.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555444444444443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.5 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCchhHHHHHH
Q 017414 280 NYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.2 Score=35.93 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHH-HHHHHcCChhH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLL-RRMPFEANAAIWGSLL-AASNIYGDVEL 262 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 262 (372)
|.....++.|...|.+.. -+.|++ .-|+.-+.++.+..+++.+..=- ..+.+.||..--..++ .+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666666666665 335555 33445566666666666655432 3335555554433333 34455566677
Q ss_pred HHHHHHHHHH
Q 017414 263 GECALQHLIK 272 (372)
Q Consensus 263 a~~~~~~~~~ 272 (372)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777655
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.5 Score=28.98 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=47.5
Q ss_pred CHHHHHHHHhccCC-CChhhHHH--HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNVISWTT--LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~~~~~~--l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 100 (372)
..++|..+-+.+.. ++..-.-. -+..+...|++++|..+.+.+ ..||...|..|. -.+.|-.+....-+..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555555554443 21111122 234566778888887776655 367877775543 3466777777777777
Q ss_pred HHHcCCCCchhHH
Q 017414 101 IEQYGLNTIVPLN 113 (372)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (372)
+...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 77666 4544444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.63 E-value=25 Score=35.63 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAI--WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
-+.+|..+|++.+|+.+..++....+... -..|+.-+...+++-+|-+++.+... +| ... +..|++...|+
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~--~~a----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DP--EEA----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CH--HHH----HHHHhhHhHHH
Confidence 35566667777777777766642333322 25667777777887777777666543 11 122 33445555778
Q ss_pred hHHHHHHHH
Q 017414 296 ESGKIRKVM 304 (372)
Q Consensus 296 ~a~~~~~~m 304 (372)
+|.++-..-
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 887765433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=7.2 Score=35.15 Aligned_cols=123 Identities=8% Similarity=-0.005 Sum_probs=82.9
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 262 (372)
--...|+.-.|.+-+.....++.-.|+ ........+...|.++.+.+.+... .+.....+...+++...+.|+++.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 334557776665544444433333333 3333444566788999998888776 234556677888888889999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|......+....-.++.+...........|-++++.-.+++.....-
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99988888876666666665555566677888888888888754433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.5 Score=28.42 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555666666777888888888888888888888888888777542 222335554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.37 E-value=7.9 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=25.0
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
-.+.++.+.+..++..+.-.. |.....-..-...+...|++.+|..+|+++..
T Consensus 20 al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344455555555555555432 11122222233445555556666666555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.8 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666665554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.99 E-value=9.1 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=21.9
Q ss_pred chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++++++.++..=. .+|+-||..+...+++.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444444444444 235555555555555555555555554444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=20 Score=32.79 Aligned_cols=175 Identities=8% Similarity=0.046 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 109 IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 109 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
|.....+++..+...-+++-...+-.+|.. .+...|..++.+|..+ ..+.-..+|+++.+... +......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 333344455555555555555555555543 3444555566666555 44555556666555432 222222222222
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHH
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNI 256 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~ 256 (372)
...++.+.+..+|.++..+ +-|. ...|..++... ..+.+..+.+..++ +...-...+..+..-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2335556666666665542 2221 12233333211 23344444444444 222333444445555666
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
..++++|++++..+.+.+..+..+...++..+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6677777777777766665555555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.98 E-value=6.3 Score=31.16 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a 231 (372)
|+..+..|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.94 E-value=21 Score=32.54 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCHHHHH-HHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHhhC--CCCCCHHHH
Q 017414 174 PNEITFI-AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GRAGYLQEAEKLLRRM--PFEANAAIW 247 (372)
Q Consensus 174 p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~--~~~~~~~~~ 247 (372)
|+..|+. .+++.+-+.|-..+|..++..+.. --+|+...|..+|+.= ..+| ...+..+|+.+ .+..|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 3443332 445555566666666666666663 3344555555555432 2233 55566666665 222566666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH-hCC
Q 017414 248 GSLLAASNIYGDVELGECALQHLIK-LEP 275 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~p 275 (372)
...+.--..+|..+.+-.++.++.+ ++|
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 6666666666776666666655554 444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.3 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 017414 12 WNTMVAGYAKVGDLNNARALFE 33 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~ 33 (372)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.4 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998754
|
... |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.2 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45568899999999999999999999988643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.31 E-value=13 Score=29.33 Aligned_cols=114 Identities=9% Similarity=-0.031 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH----HHHHHHHHHHhcCCHHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFI--AILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~ 232 (372)
+.....+++........-.++. .+...+...|++++|...++..... +.|.. .--.|.+.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555555565543222222222 3345677888899998888877732 22221 1223456677888899998
Q ss_pred HHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 233 KLLRRMP-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.+++... -.-.......-...+...|+.++|...|++..+..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 8888763 111222233334578888888888888888888764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.24 E-value=2.5 Score=36.13 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
..-|.+.|.+++|+..|...... .| +.+++..-..+|.+...+..|+.=...+..- -..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999987775 45 8888888888999999998887766655521 0111233444444444456
Q ss_pred CHHHHHHHHhhC-CCCCCH
Q 017414 227 YLQEAEKLLRRM-PFEANA 244 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~~~ 244 (372)
+..+|.+=++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666666555 566763
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.22 E-value=24 Score=32.37 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
.-+++..+..+.++.-...+..+|..-| -+...|..++.+|... ..+.-..+|+++.+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 3344444444444555555555555432 3334444455555444 334444455554444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.80 E-value=14 Score=29.16 Aligned_cols=53 Identities=9% Similarity=-0.073 Sum_probs=22.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
......|.+|+|+.+++.....+.. ......-.+.+...|+-++|..-|+...
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 3344445555555554443332211 1112222344444555555555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.1 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=19 Score=30.49 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH----HHHHHHHHhc--ccCCcchHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI----GKALQVFENM--KNKSVITWT 145 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~~~~~ 145 (372)
.+|.......+.++...|..+-... +..+.+ .++...-...+.++...|+. +++...+..+ ..++..+-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3455555555555655554333222 222332 23444444555666666652 4566666654 345555555
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 146 TMIAGLALHGLG-----REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 146 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+.++...+.. ..+...+..... .++...-...+.++.+.++ +.+...+-.+.+ .++...-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 555555544321 223333333222 2344444455566666665 344555555543 233344444444
Q ss_pred HHHhcC-CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 221 LLGRAG-YLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 221 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
++.+.+ ....+...+..+-..++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hHHH
Confidence 454432 1334444444442245666666666666666663 3444444443321 1 344566666677664 5666
Q ss_pred HHHHHHh
Q 017414 300 IRKVMRD 306 (372)
Q Consensus 300 ~~~~m~~ 306 (372)
.+..+.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 6666654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.14 E-value=7.5 Score=35.99 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=57.8
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a 263 (372)
-.|+...|...+..+.. ..|- ......|.....+.|...+|-.++.+. .+ ...+-++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34666666666665552 2332 122334555555666666666665543 22 22334556666777777778888
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHH
Q 017414 264 ECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
++.|+.+.++.|+++..-+.|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888777777666665443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=42 Score=34.07 Aligned_cols=257 Identities=9% Similarity=-0.073 Sum_probs=141.4
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 017414 27 NARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 106 (372)
Q Consensus 27 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 106 (372)
....+...+..+|+......+..+.+.+.. .+...+..+.+ .++...-...+.++.+.+........+..+.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 334555666678888888888888777754 45555556654 345444445555555443221122233333332
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
++..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-...+.++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 45555556666665543221 2345556667777766677777776655432 22222 234555555556666
Q ss_pred cccCchHH-HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 017414 187 CHVGLVEL-GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGEC 265 (372)
Q Consensus 187 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 265 (372)
...+..+. +...+..+.. .++...-...+.++...|....+...+...-..++..+-...+.++...+.. ++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHH
Confidence 66555432 3344445543 3566677778888888887655544343332245666666677777777653 3444
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 266 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 266 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+-.+.+ +| +..+-...+.++.+.+.-..+...+....
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4444432 23 45566666667766533345555555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.98 E-value=2.2 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
|..+...+...|+++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.73 E-value=6.6 Score=32.94 Aligned_cols=60 Identities=20% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+.+-.+|.+.++++.|.++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 445556788889999999999999999999988888888899999999999988876644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.72 E-value=13 Score=34.62 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=62.1
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.+.|+.+.|.++..+. -+..-|..|..+..+.+++..|.+.+...... ..|+-++...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 3456666665554333 34566888888888889998888888776543 34666666667665444
Q ss_pred HHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+-...++.. ..|.-.-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG--KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4443333221 1223334567788888888887653
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.16 E-value=3.3 Score=26.97 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=26.5
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHH
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 234 (372)
.....++|+..|..+.++..-+++. .+...++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666542222222 3455566666666666666553
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.96 E-value=21 Score=29.70 Aligned_cols=258 Identities=14% Similarity=0.151 Sum_probs=152.1
Q ss_pred CCccHHHHHHHHHHHH-hcCCHHHHHHHHhccCCC----C---hhhHHHHHHHHHhCCCccHHHHHHHHHHhC---CC--
Q 017414 5 SRLLYKFWNTMVAGYA-KVGDLNNARALFELMTEK----N---VISWTTLIAGYAQMDQPNEAITLFRRMQVE---NV-- 71 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~-- 71 (372)
+.||+..=|..-..-+ +..+.++|+.-|.++.+. . -.+...++....+.|++++..+.|.+++.- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4567666554433322 455889999999988752 2 235667888999999999999999888531 11
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcccC-------
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIV----PLNNALIDMYAKSGKIGKALQVFENMKNK------- 139 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 139 (372)
.-+....++++.-...+.+.+....+++.-... .-..+. .+-+.|...|...|.+.+..+++.++.+.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 223445667776666666666666665543321 001121 23356888899999999988888887631
Q ss_pred -----C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHh-----cccCchHHHHHHHHHhHHh
Q 017414 140 -----S---VITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSAC-----CHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 140 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~ 205 (372)
+ ...|..-|..|....+-..-..+|++.+... -.|.+... .+|+-| .+.|.+++|..=|-++-+.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 2477778888888888888888888766432 23444433 344444 4568888886544433322
Q ss_pred c---CCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHhhC-C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 206 Y---GIEPKI--EQYGCMIDLLGRAGY--LQEAEKLLRRM-P--FEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 206 ~---~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
+ |-+... --|..|...+.+.|- ++. ++. | ..|.......++.+|.. ++..+-+++++.
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 2 222111 224445555555541 110 011 2 23445566777777754 444444444443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.83 E-value=31 Score=31.44 Aligned_cols=152 Identities=17% Similarity=0.086 Sum_probs=94.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHH-HHhcccCchHHHHHHHHHhHHhcCCCcCHH--HHHH
Q 017414 149 AGLALHGLGREALDMFSRMERAR-VKPN-------EITFIAIL-SACCHVGLVELGRRYFNIMKSRYGIEPKIE--QYGC 217 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~-------~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 217 (372)
.+=.-.|++.+|++-..+|.+-- -.|. ......++ -.|+..|.++.|+.-|..+.+. .-..|.. .-..
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nln 409 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLN 409 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHh
Confidence 33345799999999999998632 1233 11222333 3455778999999998887753 2222322 2234
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH--------HHHH--HHHcCChhHHHHHHHHHHHhCC-C-----CcchH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS--------LLAA--SNIYGDVELGECALQHLIKLEP-H-----NSGNY 281 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~p-~-----~~~~~ 281 (372)
+.-.|.+.|+-+.-.++++.++ .++..++.. ++.+ ....+++.+|..++++..+... . ..-..
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 5678899999998888888883 122211111 2222 2467999999999999887431 1 22234
Q ss_pred HHHHHHHHHcCCchhHHHHHH
Q 017414 282 AILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~ 302 (372)
..|...+...|+..++.....
T Consensus 489 vLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHhcchHHHHhccc
Confidence 455667777888888776443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.83 E-value=21 Score=34.29 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCC
Q 017414 222 LGRAGYLQEAEKLLRRMPFEA 242 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~ 242 (372)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999997777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.65 E-value=11 Score=26.03 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
.++|..+-+.+...+- ....+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|..+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3555555555554331 122222223344566677777777766666666666655533 3555555555555555555
Q ss_pred CCCCCHHHH
Q 017414 171 RVKPNEITF 179 (372)
Q Consensus 171 ~~~p~~~~~ 179 (372)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=7.7 Score=34.97 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 151 LALHGLGREALD-MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 151 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
-...|+...|-+ ++..+....-.|+.+...+. .....|+++.+.+.+..... -+.....+..++++.....|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 344566555544 44444444445555544443 35678999999998888774 34455677788899999999999
Q ss_pred HHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 230 EAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 230 ~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+|..+-+.| +.+ .+..............|-++++...++++..++|+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999988887 322 24444444444556678889999999999887765
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.42 E-value=7.3 Score=28.07 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 219 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 219 (372)
+..+-++.+...++.|+......-+.+|.+.+++..|.++|+-++.+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 456666777777889999999999999999999999999999998753 34444555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.98 E-value=6.4 Score=31.52 Aligned_cols=72 Identities=24% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSN 286 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 286 (372)
....++.+.+.+.+.+++...++- .-+| |...-..++..++-.|++++|..-++-+-++.|... ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344567778888999998877665 4455 555667788899999999999999999988888643 24444443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.55 E-value=27 Score=32.48 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=82.0
Q ss_pred ccCchHHHHHHHHHhHHhcCC----------CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----------CC-------
Q 017414 188 HVGLVELGRRYFNIMKSRYGI----------EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----------PF------- 240 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~------- 240 (372)
.+..+++|.+-|......+.. +-.+.+.-.+...+..+|+.+.|.+++++. .+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 455678888888777753311 112334445566788888888777766654 11
Q ss_pred -----CC-CHHHHHHH---HHHHHHcCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHH-HcCCchhHHHHHHHHHh
Q 017414 241 -----EA-NAAIWGSL---LAASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIYA-ILGRWNESGKIRKVMRD 306 (372)
Q Consensus 241 -----~~-~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 306 (372)
.| |...|..| +..+.+.|-+..|.+..+.+..++|. ||.....+++.|+ +..+|+=-+++++..+.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 12 33333333 44667789999999999999999998 8888888888774 77888888888887743
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.29 E-value=45 Score=32.09 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHH-hCCCccHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHcCCC----Cc
Q 017414 40 VISWTTLIAGYA-QMDQPNEAITLFRRMQVENVKPDEI-----AMLAALSACAQLGAVELGEWIHNYIEQYGLN----TI 109 (372)
Q Consensus 40 ~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~ 109 (372)
..++--+...+. ...+++.|...+++.....-+++-. .-..++..+.+.+... |...++..++.--. +-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345666666666 6688999999998875543233322 1224456666666555 88888776654211 22
Q ss_pred hhHHHHH-HHHHHhcCCHHHHHHHHHhccc-----CCc--chHHHHHHHH--HhcCChhHHHHHHHHHHHcCC-------
Q 017414 110 VPLNNAL-IDMYAKSGKIGKALQVFENMKN-----KSV--ITWTTMIAGL--ALHGLGREALDMFSRMERARV------- 172 (372)
Q Consensus 110 ~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~------- 172 (372)
...+..+ +..+...++...|.+.++.+.. .+. .++-.++.+. .+.+.++++++.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2333333 3333344788889988887653 122 2333344333 345667778887777643221
Q ss_pred --CCCHHHHHHHHHHhc--ccCchHHHHHHHHHhHH---hcCCC--------------------------cCHH------
Q 017414 173 --KPNEITFIAILSACC--HVGLVELGRRYFNIMKS---RYGIE--------------------------PKIE------ 213 (372)
Q Consensus 173 --~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~---~~~~~--------------------------~~~~------ 213 (372)
.|...++..+++.++ ..|+++.+...++++.. ...-. +...
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 234556666666554 55666666555444432 10000 1011
Q ss_pred ---HHHHHHH--HHHhcCCHHHHHHHHhhC-------C----CCCC--------HHHHHHHH---------HHHHHcCCh
Q 017414 214 ---QYGCMID--LLGRAGYLQEAEKLLRRM-------P----FEAN--------AAIWGSLL---------AASNIYGDV 260 (372)
Q Consensus 214 ---~~~~li~--~~~~~g~~~~a~~~~~~~-------~----~~~~--------~~~~~~l~---------~~~~~~~~~ 260 (372)
...-++. ..+..+..++|.+++++. . ..+. ...|...+ ...+..+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 1111122 223345444555555443 2 0111 11222211 223456889
Q ss_pred hHHHHHHHHHHHhC---CC------CcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 261 ELGECALQHLIKLE---PH------NSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 261 ~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
..+...++.+.+.. |. .+..+...+..+...|+.+.|...|.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999888732 21 24455666666778899999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.8 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 282 AILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
..|..+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999887543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.93 E-value=15 Score=27.47 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVEN-----VKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
.|.++.-....+++...+.+++.+.... -..+...|.+++.+..+... --.+..+|..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 02344566777776655554 34455566666666666777777777
Q ss_pred HHHHHhc
Q 017414 117 IDMYAKS 123 (372)
Q Consensus 117 ~~~~~~~ 123 (372)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.57 E-value=3.7 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.50 E-value=35 Score=30.25 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=49.8
Q ss_pred CHHHHHHH---HHHHHHcCChhHHHHHHHHHHHhCCC-CcchHHHHHHHH-HHcCCchhHHHHHHHHHh
Q 017414 243 NAAIWGSL---LAASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIY-AILGRWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 306 (372)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||......|+.| .+.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 45778889999999999999999998 887777777776 478888888888887654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.16 E-value=22 Score=29.17 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCCCHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 219 IDLLGRAGYLQEAEKLLRRM---------PFEANAA-----------IWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~---------~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..-+.+.|++.+|...|.+. .-+|..+ .+..+..++...|++-++++....++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 33455667776666655543 2234322 333444566677888889999999999999998
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+|..-+.+.+..=+.++|..-|.....
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 8998888888888777888877776644
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.95 E-value=12 Score=31.41 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 101 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 101 (372)
+...+.|..+|.+.+|.++.++.+... +.+...+..+++.+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 333455666666666666666665542 345555556666666666654444444443
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=81.74 E-value=13 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHH
Q 017414 94 GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+.+++....+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|..+++++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3445666666652 233333333322235577888888888888 77778888888887777655543
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=81.63 E-value=16 Score=26.64 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 262 LGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 262 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
.+..+|+.|.. ++...+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888877 4456677888888888889999999888864
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.59 E-value=23 Score=27.57 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+++|...|+++.+.+|.+. .|..-+... .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 4667777777788889765 777666655 3577777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.92 E-value=52 Score=31.22 Aligned_cols=269 Identities=11% Similarity=0.014 Sum_probs=140.0
Q ss_pred HHHHHHHHhccCCC-ChhhHHHHHHH-----HHhCCCccHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC--
Q 017414 25 LNNARALFELMTEK-NVISWTTLIAG-----YAQMDQPNEAITLFRRMQV-------ENVKPDEIAMLAALSACAQLG-- 89 (372)
Q Consensus 25 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 89 (372)
...|.+.++...+. +...-..+..+ +....+.+.|+..|..+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766653 33333333322 3345678888888888866 44 2224455666665543
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcccC-CcchHHHHHHHHH----hcCChh
Q 017414 90 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS---GKIGKALQVFENMKNK-SVITWTTMIAGLA----LHGLGR 158 (372)
Q Consensus 90 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~ 158 (372)
+.+.|..++....+.| .|+.... +..+|... .+...|.++|....+. ...++-.+...|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888877 4554443 33333322 3567888888877654 3333333333332 234678
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---Hh----cCCHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GR----AGYLQEA 231 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~a 231 (372)
.|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+- +.+.....-..+.... .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888888877 3332222223333333 6666666555555532 3322111111111111 11 1245556
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH----cCCchhHHHHHHH
Q 017414 232 EKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKV 303 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 303 (372)
...+.+....-+......+...|.. ..+++.+...+..+.... ......++..+-. .. +..|.++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 6666665333344444444443322 234666766666666554 3344444444432 22 5666666665
Q ss_pred HHh
Q 017414 304 MRD 306 (372)
Q Consensus 304 m~~ 306 (372)
...
T Consensus 535 ~~~ 537 (552)
T KOG1550|consen 535 ASE 537 (552)
T ss_pred HHh
Confidence 544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.64 E-value=14 Score=29.94 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCChhHHH-------HHHHHHHHhC--CC----CcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 246 IWGSLLAASNIYGDVELGE-------CALQHLIKLE--PH----NSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~-------~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.+..+...|...|+.+... ..|.++.+.. |. .......++....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4455555666666644443 4444444322 21 12455667788888899998888888875543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.25 E-value=58 Score=31.35 Aligned_cols=178 Identities=12% Similarity=0.039 Sum_probs=93.8
Q ss_pred HHHHHHHHH-HcCCCCc--hhHHHHHHHHHH-hcCCHHHHHHHHHhccc----CCc-----chHHHHHHHHHhcCChhHH
Q 017414 94 GEWIHNYIE-QYGLNTI--VPLNNALIDMYA-KSGKIGKALQVFENMKN----KSV-----ITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 94 a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a 160 (372)
|++.++.+. +..++|. ..++-.++..+. ...+++.|+..+++... ++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 344455555 2233332 334455566555 56778888887776531 211 12334555666666555 7
Q ss_pred HHHHHHHHHcC----CCCCHHHHHHH-HHHhcccCchHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHH--hcCCHHHH
Q 017414 161 LDMFSRMERAR----VKPNEITFIAI-LSACCHVGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLG--RAGYLQEA 231 (372)
Q Consensus 161 ~~~~~~~~~~~----~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~--~~g~~~~a 231 (372)
...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+..... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 77777765431 11222333333 2233333788888888887775432 2333444444444433 44555666
Q ss_pred HHHHhhC-----C-------CCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHH
Q 017414 232 EKLLRRM-----P-------FEANAAIWGSLLAAS--NIYGDVELGECALQHLIK 272 (372)
Q Consensus 232 ~~~~~~~-----~-------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 272 (372)
.+.++++ + ..|...+|..++..+ ...|+++.+...++.+.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6555544 1 123455666666644 455776677766666544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 7e-14
Identities = 25/202 (12%), Positives = 65/202 (32%), Gaps = 9/202 (4%)
Query: 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 101
+ T + ++ A L + P E + L ++++ +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 102 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLALH 154
Q L+ A + ++ A + + ++ + ++ G A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVG-LVELGRRYFNIMKSRYGIEPKIE 213
G +E + + ++ A + P+ +++ A L R M + G++ +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQAL 237
Query: 214 QYGCMIDLLGRAGYLQEAEKLL 235
++ RA L+ K+
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 1e-06
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFR 64
L A L + + + + ++ G+A+ E + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 65 RMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123
++ + PD ++ AAL + E + Q GL L+ ++
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 124 GKIGKALQVFENMK 137
+ +V
Sbjct: 250 TVLKAVHKVKPTFS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 65/408 (15%), Positives = 117/408 (28%), Gaps = 123/408 (30%)
Query: 29 RALFELMTEKNVI---------SWTTLIAGYAQMDQPNEAITLFRRMQV------ENVKP 73
+AL EL KNV+ +W + + + ++ P
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW--VALDVCL----SYKVQCKMDFKIFWLNLKNCNSP 195
Query: 74 DEI-AMLAALSACAQLGA--VELGEWIHNYI-----EQYGLNTIV---PLNNALI---DM 119
+ + ML L Q+ + N Q L ++ P N L+ ++
Sbjct: 196 ETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 120 YAKSGKIGKALQVFENMKNKSVITWTTMIAGLA----------------LHGLG-REALD 162
KA F N+ K ++ TT + L E
Sbjct: 254 QNA-----KAWNAF-NLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 163 MFSRMERARVK--PNEIT-----FIAILSACCHVGLVELGR-RYFNIMKSRYGIEPKIEQ 214
+ + R + P E+ ++I++ GL ++ N K IE +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 215 YGCMIDLLGRAGYLQEAEKLLRRM-----PFEANAAI--------WGSLLAASNIYGDVE 261
L+ AE R+M F +A I W + I DV
Sbjct: 366 -------------LEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDV-----IKSDVM 405
Query: 262 --LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIE 319
+ + L++ +P +I S + + + + + D Y
Sbjct: 406 VVVNKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYALHRSIVD---------HY-- 453
Query: 320 VSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQ--NEFSGVL 365
+ + D P + Y I +K EH + F V
Sbjct: 454 ---NIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 48/383 (12%), Positives = 110/383 (28%), Gaps = 110/383 (28%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWT-----TLIAGYAQM---DQPNEAITLFRRMQVEN 70
+ +V D +A + + + ++ T +L+ Y D P E +T
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--------- 324
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIH--NYIEQYG---LNTIV-----PLNNALI-DM 119
P ++++A + + + + + L TI+ L A M
Sbjct: 325 TNPRRLSIIAES----------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 120 YAKSGKIGKALQVF-ENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175
+ L VF + + + W +I
Sbjct: 375 F-------DRLSVFPPSAHIPTILLSLIWFDVI--------------------------- 400
Query: 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK-L 234
+ + +++ LVE ++ S I ++L + + +
Sbjct: 401 KSDVMVVVNKLHKYSLVE--KQPKE---STISI------PSIYLELKVKLENEYALHRSI 449
Query: 235 LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 294
+ + + Y +G HL +E + + ++ R+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIE--HPERMTLFRMVFLDF-RF 502
Query: 295 NESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDR----LYQILCKINGQ 350
E KIR + ++ K ++ + P ++R + L KI
Sbjct: 503 LEQ-KIRHDSTAWNASG-SILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLPKIEEN 558
Query: 351 MKFAEH-------LQNEFSGVLE 366
+ +++ L E + E
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE 581
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 16/205 (7%)
Query: 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLALHGLGR 158
L + L A D K K ++ + + + + +
Sbjct: 92 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151
Query: 159 EALDMFSR-MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 217
+F + E AR + + A++ C + + F + +YG P+
Sbjct: 152 SGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEY--VLA 208
Query: 218 MIDLLGRAGYLQEAEKLLRR------MPFEANAAIWGSLLAASNIYGDVELGECALQHLI 271
ID L L R +P E + IW LA + GD+ +
Sbjct: 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268
Query: 272 KLEPHNSGN--YAILSNIYAILGRW 294
A+L + Y + +
Sbjct: 269 TAFREEYEGKETALLVDRYKFMDLY 293
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 7e-04
Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 21/249 (8%)
Query: 57 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN--N 114
+ I +R++ + P+ A L + G +++ ++ L
Sbjct: 16 QQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGV----VLDEIKPSSAPELQAVR 69
Query: 115 ALIDMYAKSGKIGKALQVFENMKNKSVI---TWTTMIAGLALHGLGR--EALDMFSRMER 169
+ A + + + ++SV T ++A AL + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229
+ + ++L R+ M+ + + + L LQ
Sbjct: 130 LECMAMTV------QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 230 EAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287
+A + + M + A G E E LQ + + + L +
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 288 YAILGRWNE 296
LG+ E
Sbjct: 244 SQHLGKPPE 252
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.17 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.11 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.04 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.01 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.99 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.95 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.88 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.85 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.82 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.79 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.72 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.71 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.66 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.39 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.37 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.88 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.87 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.09 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.65 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.64 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.61 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.82 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.81 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.67 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.48 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.33 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.05 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.45 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.35 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.64 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.31 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 89.18 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.92 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.26 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.8 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.34 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.5 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 82.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.06 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.77 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.44 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=241.48 Aligned_cols=197 Identities=11% Similarity=0.095 Sum_probs=172.6
Q ss_pred HHHHHhccCC----CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHH
Q 017414 28 ARALFELMTE----KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA---------VEL 93 (372)
Q Consensus 28 A~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~ 93 (372)
+..+.+.+.+ +. ...++.+|..|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4455555554 22 346888999999999999999999999999999999999999999987664 678
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 94 GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
|.++|++|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999974 6889999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (372)
.|+.||..||+.||.+|++.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999966 9999999999999988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=241.31 Aligned_cols=293 Identities=11% Similarity=0.035 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
.+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 3455567888899999999999999988 789999999999999999999999999999865 4477789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999765 66788999999999999999999999998864 45779999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC------
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM------ 238 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------ 238 (372)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 457789999999999999999999999999963 3457899999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 239 -PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 239 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..|+ ..+|..++.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44777 7899999999999999999999999999999999999999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=241.42 Aligned_cols=338 Identities=10% Similarity=-0.011 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC---------------CCC
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE---------------NVK 72 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------~~~ 72 (372)
.++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|+++|+++... +.+
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 444444444444444444444444442 234445555555555555555555555422111 112
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH------------------------------------
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL------------------------------------ 116 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 116 (372)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+...+..+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 234555555555555555555555555555443 1122222111
Q ss_pred --HHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCch
Q 017414 117 --IDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 117 --~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 192 (372)
+..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++..+.+.|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 2333444555555555555544 456677778888888888888888888887764 23556777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
++|..+++.+.+ ..+.+..++..++..|.+.|++++|.++|+++ ...| +..+|..++.++...|++++|.++++++
T Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888874 33556778888888888888888888888887 3333 5778888888888888888888888888
Q ss_pred HHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 017414 271 IKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 350 (372)
Q Consensus 271 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (372)
.+..|.+..+|..++.+|.+.|++++|.++|+++...... ....|. .++......++.+++...+.++.+.
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLN-------ELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHH-------HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888764322 111111 1122233467788888888777776
Q ss_pred HHHcCccccc
Q 017414 351 MKFAEHLQNE 360 (372)
Q Consensus 351 m~~~g~~p~~ 360 (372)
..+.|..|+.
T Consensus 505 ~~~~~~~p~~ 514 (597)
T 2xpi_A 505 VKKTQSNEKP 514 (597)
T ss_dssp HHHSCCCSGG
T ss_pred hhccccchhh
Confidence 6666777763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=232.96 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------HH
Q 017414 58 EAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK---------IG 127 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 127 (372)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4556667777777665544 5788999999999999999999999999999999999999999988765 68
Q ss_pred HHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 128 KALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 128 ~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999974 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHc
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~ 257 (372)
+. |+.||..+|+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 168 ~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 76 99999999999999999999999999999999 8899999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=203.71 Aligned_cols=296 Identities=14% Similarity=0.076 Sum_probs=156.4
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.|.+...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 107 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINL 107 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 444555555555555556666666555555443 234455556666666666666666666555532 2233445555
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 158 (372)
..++.+.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ | +..+|..+...+...|+++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666655555543 23344445555555555666666555555442 1 2345555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|+..|+++.+.+ +.+...+..+...+...|++++|...++++... .+.+..++..+..+|...|++++|.+.|+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555542 123344555555555555555555555555432 1223445555555555555555555555554
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 -PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
...| +..+|..+..++...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.
T Consensus 264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223 344455555555555555555555555555555555555555555555555555555555553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=196.62 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=265.6
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
...|.+..+|..+...|.+.|++++|+..|+++.+ | +..+|..++.++.+.|++++|++.|+++.+.. +.+...+.
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 139 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS 139 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 35678899999999999999999999999999875 4 45689999999999999999999999999853 23455677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGL 156 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 156 (372)
.+...+...|++++|...++++.+.. +.+..+|..+..++...|++++|...|+++.+ .+...|..+...+...|+
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88899999999999999999999875 55678899999999999999999999998874 345688999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+++|+..|++..... +.+..++..+...+...|++++|...|+++.+. .+.+..+|..+..++.+.|++++|...|+
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998864 335788889999999999999999999999953 34467889999999999999999999999
Q ss_pred hC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 237 RM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 237 ~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++ ..+.+..++..+...+...|++++|...++++.+..|+++.++..++.++.+.|++++|.+.++++..
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 22357889999999999999999999999999999999999999999999999999999999999865
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-25 Score=198.85 Aligned_cols=301 Identities=12% Similarity=0.054 Sum_probs=258.8
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 78 (372)
+..+|.+..++..+...|.+.|++++|+.+|+.+.+ .+..+|..++.++...|++++|+..|+++.+.+ +.+..++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 345778899999999999999999999999999875 467899999999999999999999999999864 4567889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNAL------------IDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..++.+.|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|..+|+++.+ .+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999864 3344 555555 4458999999999999998864 46
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH--
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM-- 218 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 218 (372)
..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+++... .+.+...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQ 253 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHH
Confidence 6789999999999999999999999998863 456788999999999999999999999999853 23344555444
Q ss_pred ----------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 219 ----------IDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 219 ----------i~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+..+...|++++|...|+++ ...|+ ...+..+..++...|++++|...++++.+..|.++.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999998 43454 447888889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.++.+|...|++++|.+.+++....
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-22 Score=174.96 Aligned_cols=295 Identities=12% Similarity=0.045 Sum_probs=250.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
|+..+..+...+.+.|++++|+..|+.+.+ .+..++..+..++...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 577889999999999999999999999875 357789999999999999999999999998863 3467889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCC---CchhHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCcchHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLN---TIVPLNNAL------------IDMYAKSGKIGKALQVFENMKN---KSVITWTT 146 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 146 (372)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.++|+++.+ .+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999864 3 345555555 6889999999999999998764 45678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH----------
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG---------- 216 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 216 (372)
+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 456788889999999999999999999999864 233333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 217 --CMIDLLGRAGYLQEAEKLLRRM-PFEAN-A----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 217 --~li~~~~~~g~~~~a~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
.+...+.+.|++++|...+++. ...|+ . ..+..+..++...|++++|...++++.+..|.++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999987 33343 2 23555778899999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.+++....
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999988653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=185.96 Aligned_cols=295 Identities=12% Similarity=0.030 Sum_probs=248.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE---- 75 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---- 75 (372)
...|.+..+|..+...|.+.|++++|+..|+++.+ .+..++..++.+|.+.|++++|++.|+++.+. .|+.
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 131 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEK 131 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 35678899999999999999999999999999875 35778999999999999999999999999985 4543
Q ss_pred HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 76 IAMLAA------------LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 76 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..+ ...+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|..+|+++.+ .+
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 455544 445889999999999999999875 66788899999999999999999999998864 46
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI------------LSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
..+|..++.+|...|++++|+..|+++.... +.+...+..+ ...|...|++++|..+|+.+.+.
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--- 286 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 286 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 7899999999999999999999999998763 2234444444 78899999999999999999864
Q ss_pred CcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 209 EPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 209 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
.|+ ...+..+..++.+.|++++|...++++ ...| +...|..+..+|...|++++|...++++.++.|.++.++
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 343 457888999999999999999999997 4345 688999999999999999999999999999999999898
Q ss_pred HHHHHH------------HHHcC-----CchhHHHHHHHH
Q 017414 282 AILSNI------------YAILG-----RWNESGKIRKVM 304 (372)
Q Consensus 282 ~~l~~~------------~~~~g-----~~~~a~~~~~~m 304 (372)
..+..+ |...| +.+++.+.++++
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 888844 44445 445566666653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=180.02 Aligned_cols=295 Identities=10% Similarity=-0.029 Sum_probs=252.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
+...+......+.+.|++++|+..|+++.+ |+..+|..++.++.+.|++++|+..|+++.+.+ +.+..++..+..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456788889999999999999999999875 888999999999999999999999999999864 45677899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCC---------------------------------------------------------
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNT--------------------------------------------------------- 108 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~--------------------------------------------------------- 108 (372)
.+.|++++|...|+.+.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988765211
Q ss_pred ---------------------chhHHHHHHHHHHh---cCCHHHHHHHHHhccc-----C------------CcchHHHH
Q 017414 109 ---------------------IVPLNNALIDMYAK---SGKIGKALQVFENMKN-----K------------SVITWTTM 147 (372)
Q Consensus 109 ---------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~l 147 (372)
+...+..+...+.. .|++++|..+|+++.+ . +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12233333344443 8999999999998765 1 34578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
...+...|++++|...++++.+... +...+..+...+...|++++|...++.+.+ ..+.+...+..+...|...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998753 377888899999999999999999999985 334467889999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999987 3334 567888899999999999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 017414 306 DM 307 (372)
Q Consensus 306 ~~ 307 (372)
..
T Consensus 400 ~~ 401 (514)
T 2gw1_A 400 EL 401 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=167.85 Aligned_cols=286 Identities=11% Similarity=0.060 Sum_probs=193.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.|..++..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556666777777777777777777777654 234556666677777777777777777777643 33556666777
Q ss_pred HHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 83 SACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 83 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
..+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+ .+..++..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777777777777654 44566677777777777777777777776653 23456666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC-------CCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG-------IEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
+|.+.+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777777653 33456667777777777777777777777764311 123345677777777777777777
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH-HHcCCc
Q 017414 232 EKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY-AILGRW 294 (372)
Q Consensus 232 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 294 (372)
...+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 7777766 2222 4556677777777777777777777777777777777777777766 344443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=177.52 Aligned_cols=225 Identities=9% Similarity=-0.069 Sum_probs=161.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
+..+...+...|++++|...++.+.+.... ...+..++.+|...|++++|...|++..+ .+..+|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 334444445555555555555555544311 44555555555555555555555555443 2445777788888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|...+++..+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887764 234567777888888888888888888888753 234567788888888889999999888
Q ss_pred HhhC----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 235 LRRM----PFEAN----AAIWGSLLAASNI---YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 235 ~~~~----~~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|...|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8877 22222 3378888888888 89999999999999998888888888999999999999999999888
Q ss_pred HHhC
Q 017414 304 MRDM 307 (372)
Q Consensus 304 m~~~ 307 (372)
....
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=168.55 Aligned_cols=281 Identities=11% Similarity=-0.005 Sum_probs=228.8
Q ss_pred HHHhcCCHHHHHH-HHhccCC--C-----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 18 GYAKVGDLNNARA-LFELMTE--K-----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 18 ~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.+.-.|++++|.. .|++..+ | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445688999998 8886654 1 34678899999999999999999999999864 457788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---cchHHH---------------HHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS---VITWTT---------------MIAGL 151 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~---------------l~~~~ 151 (372)
++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+.+ ...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999999886 5678899999999999999999999999886432 222221 13334
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 152 ALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+..++...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999999874321 5788899999999999999999999999853 24467889999999999999999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-----------cchHHHHHHHHHHcCCchhH
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-----------SGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 297 (372)
|...|+++ ...| +...+..+..++...|++++|...++++.+..|.+ ..+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999997 3334 67789999999999999999999999999988776 78999999999999999999
Q ss_pred HHHHH
Q 017414 298 GKIRK 302 (372)
Q Consensus 298 ~~~~~ 302 (372)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 99876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=161.23 Aligned_cols=264 Identities=11% Similarity=0.016 Sum_probs=229.8
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778889999999999999999999998864 3455667778888999999999999999999875 56788889999
Q ss_pred HHHHhcC-CHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 118 DMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 118 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
..+...| ++++|...|++..+ .+..+|..+...+...|++++|++.+++..+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 3567899999999999999999999999998743 34566777889999999999
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----------CCCHHHHHHHHHHHHHcCChhH
Q 017414 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----------EANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~~~~ 262 (372)
+|...++++.+ ..+.+...+..+...+...|++++|...+++. .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999995 33556788999999999999999999999887 11 2345788999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...++++.+..|.++.++..++.++...|++++|.+.+++...
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-20 Score=161.07 Aligned_cols=283 Identities=9% Similarity=-0.031 Sum_probs=237.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC----CH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP----DE 75 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p----~~ 75 (372)
...|.+..++..+...+...|++++|...|+.+.+ | +...|..+...+...|++++|+..|+++.+. .| +.
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 108 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEK 108 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChH
Confidence 35677899999999999999999999999999875 3 5678999999999999999999999999885 35 34
Q ss_pred HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 76 IAMLAA------------LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 76 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..+ ...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+ .+
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 444444 578889999999999999999875 56788899999999999999999999998865 35
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH------------HHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI------------AILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|...++.+.+..
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 264 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 264 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 67899999999999999999999999988642 2333332 23566889999999999999999642
Q ss_pred CcCH----HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 209 EPKI----EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 209 ~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+.+. ..+..+..++...|++++|...+++. ...| +...+..+...+...|++++|...++++.++.|.++..+.
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 2233 33556788999999999999999988 3344 7788999999999999999999999999999999998888
Q ss_pred HHHHHHHHc
Q 017414 283 ILSNIYAIL 291 (372)
Q Consensus 283 ~l~~~~~~~ 291 (372)
.+..+....
T Consensus 345 ~l~~~~~~~ 353 (359)
T 3ieg_A 345 GLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-20 Score=169.63 Aligned_cols=299 Identities=11% Similarity=0.019 Sum_probs=234.7
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHH-------------
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRM------------- 66 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m------------- 66 (372)
...|.++.+|..+...|.+.|++++|++.|+++.+ | +..++..+..++...|++++|+..|+.+
T Consensus 53 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 132 (537)
T 3fp2_A 53 ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------C
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHH
Confidence 35677888888888888888888888888888764 3 5567777888888888888777766422
Q ss_pred --------------------------------------------------------------------------------
Q 017414 67 -------------------------------------------------------------------------------- 66 (372)
Q Consensus 67 -------------------------------------------------------------------------------- 66 (372)
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence
Q ss_pred ----------------HhCCCCCC--------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 67 ----------------QVENVKPD--------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 67 ----------------~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
.+ ..|+ ..++..+...+...|++++|...++.+.+.. |+...+..+...|..
T Consensus 213 ~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 11 1122 1234555566777788888888888888864 447778888888888
Q ss_pred cCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.|++++|...|++..+ .+..+|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887764 356788889999999999999999999988864 234567888888999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCC----CCHHHHHHHHHHHHHc----------CChh
Q 017414 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFE----ANAAIWGSLLAASNIY----------GDVE 261 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~----~~~~~~~~l~~~~~~~----------~~~~ 261 (372)
+.+.+. .+.+...+..+...+...|++++|...|+++ +.. .....+......+... |+++
T Consensus 368 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 368 NETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 999864 3445678888999999999999999999886 111 1223344555677777 9999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|...++++.+..|.++.++..++.+|...|++++|.+.|++.....
T Consensus 446 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999986653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=169.36 Aligned_cols=295 Identities=11% Similarity=0.064 Sum_probs=241.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|..+...+.+.|++++|+..|+++.+ .++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788899999999999999999999875 367899999999999999999999999999864 4567889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCC-------------------------------------Cchh----------------
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLN-------------------------------------TIVP---------------- 111 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------~~~~---------------- 111 (372)
+...|++++|...++.+ ..... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998633 21101 0000
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcccCCc----------chHHHHHHHHHhcCChhH
Q 017414 112 --------------LNNALIDMYAK--------SGKIGKALQVFENMKNKSV----------ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 112 --------------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~ 159 (372)
....+...+.. .|++++|..+|+++.+.++ .++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11222222211 2478899999998876432 257777788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 238 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 238 (372)
|...+++..+. .|+...+..+...+...|++++|...++.+.+. .+.+..++..+...+...|++++|...+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999986 455788889999999999999999999999864 2456788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 239 PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 239 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
...| +...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++....
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 467888899999999999999999999999999999999999999999999999999999986543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-19 Score=151.50 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=221.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
+.-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3456678999999999988766432 3556688999999999999987654 2 366778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 92 ELGEWIHNYIEQYGLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
++|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999999876434 567778888999999999999999999 567789999999999999999999999999987
Q ss_pred CCCCCHHHH---HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 171 RVKPNEITF---IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 171 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| +..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 543211 22334455679999999999999964 4668899999999999999999999999997 4345 677
Q ss_pred HHHHHHHHHHHcCChhH-HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 246 IWGSLLAASNIYGDVEL-GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
++..++..+...|+.++ +.++++++.+.+|+++.+ .....+.+.|+++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 89999999999999875 678999999999998843 34556666666665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=163.63 Aligned_cols=261 Identities=8% Similarity=-0.074 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568999999999999999999999999864 4578899999999999999999999999999875 566888999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCC-------------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKS-------------VITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILS 184 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 184 (372)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887421 123344588899999999999999999987432 15788999999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|...|++. ...| +..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999863 3456889999999999999999999999988 3345 57889999999999999999
Q ss_pred HHHHHHHHHHhCCC------------CcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 263 GECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 263 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
|...++++.++.|. +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997765 367899999999999999988887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=156.20 Aligned_cols=259 Identities=9% Similarity=-0.058 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666677777777777777777776643 3356666677777777777777777777777664 44566677777777
Q ss_pred HhcCCHHHHHHHHHhcccC---CcchHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNK---SVITWTTM--------------IA-GLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766532 22223222 22 3777889999999999998874 3467888889
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2446788999999999999999999999987 3334 677899999999999999
Q ss_pred hHHHHHHHHHHHhCCC------------CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 261 ELGECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
++|...++++.+..|. ++.++..++.++...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999888 6789999999999999999999988643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=158.76 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=203.8
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHccCChHHHH
Q 017414 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAIT-LFRRMQVENV-KP--DEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
...+.|+.+...|+.+.+.+.. ++...|++++|++ .|++...... .| +...+..+...+.+.|++++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 84 (368)
T 1fch_A 12 SDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84 (368)
T ss_dssp -----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666666666554332 3345588999998 8887765321 11 3456778899999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV 172 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (372)
..++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...|...|++++|++.++++.....
T Consensus 85 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 85 LLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999875 56788899999999999999999999998764 4667899999999999999999999999998642
Q ss_pred CCCHHHHH-H--------------HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 173 KPNEITFI-A--------------ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 173 ~p~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
.. ...+. . .+..+...|++++|...++++.+.....++..++..+...|...|++++|...+++
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 AY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 11221 1 13333488999999999999996422222578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+ ...| +...+..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++....
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7 3334 67889999999999999999999999999999999999999999999999999999999988654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=161.33 Aligned_cols=259 Identities=13% Similarity=-0.007 Sum_probs=214.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
.+...+..+...+.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455688999999999999999999999875 467899999999999999999999999999864 446889999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhH----------HHHHHHHHHhcCCHHHHHHHHHhccc--C---CcchHHHHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPL----------NNALIDMYAKSGKIGKALQVFENMKN--K---SVITWTTMI 148 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~ 148 (372)
++...|++++|...++++.+.. +.+... +..+...+...|++++|..+|+++.+ | +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998864 222222 33458899999999999999998874 3 567899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
..|...|++++|++.|++..+.. +.+..++..+..+|...|++++|...|+++.+. .+.+..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999874 446789999999999999999999999999863 244578899999999999999
Q ss_pred HHHHHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 229 QEAEKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
++|...|++. ...| +...|..+..++...|+.+.+..+.++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999987 1111 2577899999999999999888876653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=163.23 Aligned_cols=251 Identities=14% Similarity=0.087 Sum_probs=119.4
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 017414 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 99 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 99 (372)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999653 677799999999999999999999888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 017414 100 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 4557788899999999999999998886 477789999999999999999999999976 378
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (372)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 999999999999999999999882 7889999999999999999998777766544544 5578899999999
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+++|..+++..+.+++.+...|+.|..+|++- +.++..+-++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999999999999999999999998876 3444444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=154.07 Aligned_cols=261 Identities=11% Similarity=0.017 Sum_probs=218.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
+...+..+...+.+.|++++|..+|+++.+ .+...+..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 456677889999999999999999999865 366789999999999999999999999998864 4577889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhccc---CCcchHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL--------------ID-MYAKSGKIGKALQVFENMKN---KSVITWTT 146 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 146 (372)
+...|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999999864 3344444433 33 47788999999999998764 35678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..+|...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874 346778889999999999999999999999863 2446788999999999999
Q ss_pred CHHHHHHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 227 YLQEAEKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
++++|...+++. ...| +...|..+..++...|++++|..++++..+.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999987 2223 3678888999999999999999998876653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=146.40 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=202.5
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 47 IAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
++.....|++..|+..+++.... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34566789999999999887553 4543 3556678999999999999986654 2 3667888899999999999
Q ss_pred CHHHHHHHHHhccc----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 KIGKALQVFENMKN----K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
+.++|++.++++.. | +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998752 3 456778888999999999999999987 457788889999999999999999999
Q ss_pred HHhHHhcCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 200 NIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
+.+.+. .|+... ...++..+...|++++|..+|+++ ....+...++.+..++...|++++|+..++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999964 354321 122344455669999999999998 323578889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCchh-HHHHHHHHHhC
Q 017414 275 PHNSGNYAILSNIYAILGRWNE-SGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 307 (372)
|.++.++..++..+...|+.++ +.++++++...
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=158.44 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=136.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.+++...+. .++..+.+.++.+|.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHH
Confidence 3469999999999999999999999664 67779999999999999999999988777663 4567888899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 999999988874 467779999999999999999999999987 48999999999999999999999987
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++++|..+++.. +..+ ...
T Consensus 175 ------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 175 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred ------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 27789999999999999999996544432 234444567899999999999999999987 5444 567
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 246 IWGSLLAASNIY--GDVELGECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 246 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.|..|..++++. ++..+..+.|..-..+.| .+...|..+...|...++|+.|..+.
T Consensus 243 ~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 243 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 788887777766 333444444433322334 46779999999999999999888744
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=136.38 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCc----hhHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTI----VPLNNA 115 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 115 (372)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555443 4444555555555555555555555555444210 001 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
+..+|...|++++| +..|++.... .|+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A-------------------------------~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKT-------------------------------IEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHH-------------------------------HHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHH-------------------------------HHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 44444444444444 4444444432 1221 122333444555
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...++.+.. ..+.+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555442 11222344444555555555555555555544 111 23444555555555555555555555555555
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.|.++.++..++.++...|++++|.+.+++.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555555555555555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=132.95 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARV--KPN----EITFIAI 182 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 182 (372)
..+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|++.+++..+... .|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444555555566666666665554432 3445566666666666666666666666655321 122 4678889
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999954 4553 4566778899999999987 4445 556788888899999999
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
++|...++++.+..|.++.++..++.++...|++++|.+.+++.....
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=142.58 Aligned_cols=307 Identities=10% Similarity=-0.022 Sum_probs=206.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CChhhHHHHHHHHHh--CCCccHHHHHHHHHHhCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-----------KNVISWTTLIAGYAQ--MDQPNEAITLFRRMQVENV 71 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~ 71 (372)
.+....+|+.+..+|...|++++|...+++..+ ....+++.+..++.. .+++++|++.|++..+.
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-- 167 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-- 167 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--
Confidence 345577899999999999999999999887642 123566666655554 45799999999999885
Q ss_pred CC-CHHHHHHHHHH---HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc---CC
Q 017414 72 KP-DEIAMLAALSA---CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 72 ~p-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~ 140 (372)
.| +...+..+..+ +...++.++|.+.+++..+.. +.+..++..+...+.. .|++++|.+++++..+ .+
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 246 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence 45 44455555444 445677888999999988875 4566666666655554 4678899999987653 35
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-------------------CchHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV-------------------GLVELGRRYFNI 201 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~ 201 (372)
..++..+...|...|++++|+..+++..+.. +-+..++..+...|... +..+.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5688999999999999999999999998864 23455666555554321 345677888888
Q ss_pred hHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH----HHHHHH-HHHHcCChhHHHHHHHHHHHh--
Q 017414 202 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI----WGSLLA-ASNIYGDVELGECALQHLIKL-- 273 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~----~~~l~~-~~~~~~~~~~a~~~~~~~~~~-- 273 (372)
+.+. -+.+...+..+...|...|++++|...|++. ...|+... +..+.. .....|+.++|+..++++.++
T Consensus 326 a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 326 ADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred Hhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 7753 2344567788999999999999999999987 44444332 233332 234678899998888777653
Q ss_pred ----------------------CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeE
Q 017414 274 ----------------------EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 274 ----------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
+|.++.+|..|+.+|...|++++|.+.|++..+.|-..+...+|
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 57778899999999999999999999999988766544333333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-19 Score=164.77 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMT-------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
..+||++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcC
Q 017414 82 LSACAQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHG 155 (372)
Q Consensus 82 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 155 (372)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998777654333333332222211 1234445555565544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=129.41 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=145.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
|++...+..+...+.+.|++++|...|++..+. +..++..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666677777777777777777777766542 44567777777778888888888888777763 33456677777
Q ss_pred HHhccc-----------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 017414 184 SACCHV-----------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 251 (372)
Q Consensus 184 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~ 251 (372)
..+... |++++|...++++.+. -+.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999999853 2345788889999999999999999999987 2127788899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.++...|++++|...++++.+..|.++.++..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=133.08 Aligned_cols=242 Identities=10% Similarity=-0.031 Sum_probs=185.3
Q ss_pred HhCCCccHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 51 AQMDQPNEAITLFRRMQVENV--KP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
...|++++|+..|+++.+... +| +..++..+..++...|++++|...++++.+.. +.+..++..++.+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345778889999988887532 11 35567788888888999999999999888875 556788888899999999999
Q ss_pred HHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 128 KALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 128 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+|...|++..+ .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988764 356788889999999999999999999988863 4444444444555677999999999988875
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 205 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
. .+++...+ .++..+...++.++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 23444444 4777788888889999999886 33332 56788889999999999999999999999998765
Q ss_pred chHHHHHHHHHHcCCchhHHHHH
Q 017414 279 GNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 443 56778888888888765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=131.74 Aligned_cols=244 Identities=9% Similarity=-0.053 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQ 87 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~ 87 (372)
......+...|++++|+..|+...+ | +...+..+..++...|++++|++.|++..+.+..|+ ...|..+..++..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344445555555555555554432 1 233444455555555555555555555544211111 1224444444445
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.|++++|...++.+.+.. +.+.. +|..+...|...|++++|++.|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLD-------------------------------MYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTH-------------------------------HHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHHhcC-cccHH-------------------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555444432 22334 4444444444555555555555444
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC----CC
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM----PF 240 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~----~~ 240 (372)
.+.. +.+...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++. ..
T Consensus 135 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 135 IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 4431 222333333331222223555555555555532 12234444455555555554 44444444443 11
Q ss_pred CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 241 EAN------AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 241 ~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.|+ ...|..+...+...|++++|...++++.+++|.++.++..+.......
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 122 245666777888889999999999999999998887777766554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-18 Score=159.43 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 017414 109 IVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 181 (372)
Q Consensus 109 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 181 (372)
-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997764 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCch-HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 182 ILSACCHVGLV-ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 182 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
+|.++++.|+. +.|.++|++|.++ |+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999998874 7888999999977 9999999999888766665444444333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-14 Score=129.20 Aligned_cols=253 Identities=10% Similarity=-0.043 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhhHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 7 LLYKFWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.|+..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 355666666666666 6777777777766554 355666666666666 667777777777766643 4445
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCcchHHHHH
Q 017414 78 MLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN-KSVITWTTMI 148 (372)
Q Consensus 78 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 148 (372)
+..|...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+ .+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555566655 566677777777666654 34445556666655 5666666666665543 3445555555
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|..+|++..+. .+...+..+..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 263 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 55655 566666666666655543 23344444444443 45555555555555432 12333344444
Q ss_pred HHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHH
Q 017414 221 LLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-----GDVELGECALQHLIK 272 (372)
Q Consensus 221 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~ 272 (372)
.|.. .+++++|...|++.-..-+...+..+...+... +++++|...++++.+
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 4444 445555555554441112333333344444333 444444444444433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-14 Score=130.41 Aligned_cols=287 Identities=10% Similarity=-0.015 Sum_probs=180.7
Q ss_pred ccHHHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhhHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 7 LLYKFWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.++..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|+..|++..+.| +...
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 456667777777777 7788888888877655 356667777777777 677788888888777654 4555
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCcchHHHHH
Q 017414 78 MLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN-KSVITWTTMI 148 (372)
Q Consensus 78 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 148 (372)
+..+...|.. .++.++|...|++..+.| +...+..|...|.. .++.++|.++|++..+ .+..++..+.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666665 667777777777777654 45566667777776 6777777777776554 3445666666
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|.++|++..+.| +...+..+...|.. .++.++|..+|++..+. + +...+..+..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHH
Confidence 66665 667777777777766543 23344444444544 56677777777666632 2 3445555566
Q ss_pred HHHhc-----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH--
Q 017414 221 LLGRA-----GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG---DVELGECALQHLIKLEPHNSGNYAILSNIYAI-- 290 (372)
Q Consensus 221 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 290 (372)
.|... +++++|...|++.-...+...+..+...+...| +.++|.+.++++.+. .++..+..|+..|..
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 66555 666666666666511123444555555555444 556666666666554 244566666666666
Q ss_pred --cCCchhHHHHHHHHHhCC
Q 017414 291 --LGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 291 --~g~~~~a~~~~~~m~~~g 308 (372)
.+++++|.+.|++..+.|
T Consensus 378 g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 566666666666665544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-15 Score=134.96 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=138.4
Q ss_pred chHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC
Q 017414 142 ITWTTMIAGLAL-------HGLGR-------EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 207 (372)
Q Consensus 142 ~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 207 (372)
..|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--- 349 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--- 349 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---
Confidence 344445555554 57776 7888888877521233567777788888888899999999988884
Q ss_pred CCcC-H-HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 208 IEPK-I-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 208 ~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
..|+ . ..|..++..+.+.|++++|..+|++. ...|+ ...|...... +...|+.++|..+|+++.+..|+++..|.
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 2443 2 47888888888888899999988887 33332 2333322222 33689999999999999999999999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCc-cC-CceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDMGVK-KM-PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
.++..+.+.|+.++|..+|++....+.. |. ....|. .++.-...+++.+.+..+..+..+...
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~-------~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-------RFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999998776422 21 111220 011112346777777766666555554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=133.57 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=204.4
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
...|+.+...+.+.|++++|++.|+++++.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3578888999999999999999999999853 3467788899999999996 999999999999986 567889999999
Q ss_pred HHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-cCchHH
Q 017414 119 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH-VGLVEL 194 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 194 (372)
++...|++++|+..|+++.+ .+..+|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998874 466789999999999999999999999999875 3367788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--------
Q 017414 195 G-----RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG--YLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYG-------- 258 (372)
Q Consensus 195 a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 258 (372)
| ...++++... -+-+...|..+..++...| ++++|.+.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 4788888753 2345678888888898888 6889999888874444 5667888888888764
Q ss_pred C-hhHHHHHHHHH-HHhCCCCcchHHHHHHHHHHc
Q 017414 259 D-VELGECALQHL-IKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 259 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 291 (372)
+ .++|..+++++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888888776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-16 Score=124.78 Aligned_cols=192 Identities=15% Similarity=0.035 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555555555555555554432 2234444444455555555555555555555443 33344444455555
Q ss_pred Hhc-----------CCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 121 AKS-----------GKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 121 ~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
... |++++|+..|++..+ | +..+|..+..++...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 544 555555555555442 2 33455555556666666666666666665554 4555555566666
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
...|++++|...|+++.+. -+.+...+..+..++...|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666532 1234455555666666666666666665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-15 Score=124.65 Aligned_cols=200 Identities=10% Similarity=-0.105 Sum_probs=149.2
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI 76 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 76 (372)
...|.+..++..+...|...|++++|+..|++..+ ++. .+|..+...+...|++++|+..|++..+.. +.+..
T Consensus 31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 109 (272)
T 3u4t_A 31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLD 109 (272)
T ss_dssp HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTH
T ss_pred HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHH
Confidence 45667788899999999999999999999998876 232 248999999999999999999999999864 34667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 153 (372)
++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|++..+ | +...+..+..++..
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 88899999999999999999999888763 45566777777344444588888888887654 2 34566666777777
Q ss_pred cCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 154 HGL---GREALDMFSRMERAR-VKPN------EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 154 ~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
.|+ +++|...+++..+.. ..|+ ..++..+...|...|++++|...|+++.+
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776 777777777766531 1122 13555666666777777777777777764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-15 Score=121.53 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=111.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 22334444444445555555555554444332 1334445555555555
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
|++++|.++++++...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666665555422233 3345555666666667777777777666642 13345666667777777777777777
Q ss_pred HHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 234 LLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 234 ~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.++++ ... .+...+..+...+...|+.++|...++++.+..|.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77665 222 345556666667777777777777777777777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-14 Score=120.11 Aligned_cols=223 Identities=10% Similarity=-0.073 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNA 115 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (372)
+.++..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344555555555555666666666555552 233444555555555 556666666666555543 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcccC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 116 LIDMYAK----SGKIGKALQVFENMKNK-SVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 116 l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
+...|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.+ +...+..+...|
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 55666666655554432 33455555555555 666666666666666543 334444555555
Q ss_pred cc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHH-
Q 017414 187 CH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEANAAIWGSLLAASNI- 256 (372)
Q Consensus 187 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~- 256 (372)
.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 54 66666666666666642 134455556666666 66666666666655 212 24455555556665
Q ss_pred ---cCChhHHHHHHHHHHHhCCC
Q 017414 257 ---YGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 257 ---~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+++++|...++++.+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=126.12 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=108.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+ .+..++..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333334444444444444444444322 22334444444444444444444444444332 1334445555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555542 234455556666666666677777666666642 233455666666777777777777777
Q ss_pred HhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+++. ... .+..++..+..++...|++++|...++++.+..|.++.++..+....
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 7665 222 34566777777777778888888888888887777776666554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=128.34 Aligned_cols=240 Identities=8% Similarity=-0.133 Sum_probs=190.2
Q ss_pred HHhcCCHHHHHHHHhccCCC-------ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 19 YAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
+...|++++|+..|+.+.+. +..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999988762 35678999999999999999999999999864 45688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+.......+..+...|++++|...+++...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999875 55688899999999999999999999998874 4444444555566778999999999988877
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
.. +++...+ .++..+...++.++|...+..+... .|+ ...+..+...|...|++++|...|++. ...|+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 63 3343344 3667778888889999999888732 332 577888999999999999999999998 55664
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHH
Q 017414 244 AAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
. +.....++...|++++|...+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677788888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-15 Score=129.53 Aligned_cols=246 Identities=10% Similarity=-0.009 Sum_probs=205.6
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCC-ccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQ-PNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
+.+.+..+|+.+..++.+.|++++|+..|++..+ | +..+|+.+..++...|+ +++|+..|+++++.. +-+...|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 4556788899999999999999999999999875 3 56789999999999997 999999999999864 34778999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh-cC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL-HG 155 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-~~ 155 (372)
.+..++...|++++|...++++++.. +.+...|..+..++...|++++|+..|+++.+ .+..+|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999986 66788999999999999999999999999875 356799999999999 66
Q ss_pred ChhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHhcccC--chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC--
Q 017414 156 LGREA-----LDMFSRMERARVKPNEITFIAILSACCHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-- 226 (372)
Q Consensus 156 ~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 226 (372)
..++| +..|++.+... +-+...|..+...+...| ++++|.+.+..+ + ..+.+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcc
Confidence 66888 58898888864 335678888888888888 689999999887 3 44556788889999998874
Q ss_pred -------CHHHHHHHHhhC--CCCCC-HHHHHHHHHHHH
Q 017414 227 -------YLQEAEKLLRRM--PFEAN-AAIWGSLLAASN 255 (372)
Q Consensus 227 -------~~~~a~~~~~~~--~~~~~-~~~~~~l~~~~~ 255 (372)
.+++|.++|+++ ...|. ...|..+...+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 358999999998 56664 345666655544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-14 Score=117.16 Aligned_cols=202 Identities=10% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444445555555555555444432 22344444445555555555555555544432 123344455555555
Q ss_pred c-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 154 H-GLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 154 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 5 555555555555554222222 344555555566666666666666666532 122355555666666666666666
Q ss_pred HHHHhhC-CCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 232 EKLLRRM-PFE--ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 232 ~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
...+++. ... .+...+..+...+...|+.+.+..+++.+.+..|.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 6666655 111 2444455555555666666666666666666666555433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-14 Score=117.95 Aligned_cols=225 Identities=9% Similarity=-0.076 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcccC-CcchHHHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKNK-SVITWTTMI 148 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~ 148 (372)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .|++++|...|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888889999999999999999999983 345677889999999 99999999999987654 667889999
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66788888888888 99999999999999963 3 5677888888
Q ss_pred HHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH--
Q 017414 221 LLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI-- 290 (372)
Q Consensus 221 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 290 (372)
.|.. .+++++|...|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987212456778888899999 9999999999999999876 6688999999999
Q ss_pred --cCCchhHHHHHHHHHhCCCc
Q 017414 291 --LGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 291 --~g~~~~a~~~~~~m~~~g~~ 310 (372)
.+++++|.+.+++..+.|..
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999998776643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=120.11 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
...|..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4568888888999999999999999988753 4467788888899999999999999999988875 4567788888999
Q ss_pred HHhcCCHHHHHHHHHhccc--C---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 120 YAKSGKIGKALQVFENMKN--K---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
|...|++++|.++|+++.+ . +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998765 2 34577888888999999999999999988764 3357778888889999999999
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
|...++.+.+ ..+.+...+..+...+...|++++|.+.++++ ...|+...
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999884 33456777888888999999999999999887 33454333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=137.97 Aligned_cols=292 Identities=12% Similarity=0.008 Sum_probs=224.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-N----VISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP 73 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p 73 (372)
++.....+......+...|++++|...|++..+ | + ...|..+...+...|++++|+..|++.... +..|
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345677788899999999999999999998865 3 2 357888999999999999999999987543 2222
Q ss_pred -CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-chhHHHHHHHHHHhcCC--------------------HH
Q 017414 74 -DEIAMLAALSACAQLGAVELGEWIHNYIEQYG----LNT-IVPLNNALIDMYAKSGK--------------------IG 127 (372)
Q Consensus 74 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~--------------------~~ 127 (372)
...++..+...+...|++++|...++++.+.. -++ ...++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24467788889999999999999999887541 111 14477888999999999 99
Q ss_pred HHHHHHHhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchH
Q 017414 128 KALQVFENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVE 193 (372)
Q Consensus 128 ~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~ 193 (372)
+|...+++..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99998887643 1 134788889999999999999999998875311 112 237778888999999999
Q ss_pred HHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCChh
Q 017414 194 LGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~ 261 (372)
+|...+++..+...-..+ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988743111111 467788899999999999999999887 11122 456778888999999999
Q ss_pred HHHHHHHHHHHhC------CCCcchHHHHHHHHHHcCCchh
Q 017414 262 LGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 262 ~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
+|...++++.++. +....++..++..+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999998853 2234577788888888887754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=133.06 Aligned_cols=267 Identities=10% Similarity=-0.015 Sum_probs=210.3
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-c
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-I 109 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 109 (372)
....+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...++++.+. +.+| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44567778889999999999999999998863 223 356778889999999999999999987643 2122 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCC--------------------hhHH
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREA 160 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a 160 (372)
..++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 56778899999999999999999988764 22 3478889999999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHH
Q 017414 161 LDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 161 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 231 (372)
.+.+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887642 1111 1346778888999999999999999988753211122 24788889999999999999
Q ss_pred HHHHhhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC------cchHHHHHHHHHHcCCchhH
Q 017414 232 EKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 232 ~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 297 (372)
...+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999886 11122 4577888889999999999999999998854322 55788999999999999999
Q ss_pred HHHHHHHHh
Q 017414 298 GKIRKVMRD 306 (372)
Q Consensus 298 ~~~~~~m~~ 306 (372)
.+.+++...
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=135.37 Aligned_cols=265 Identities=9% Similarity=-0.050 Sum_probs=204.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchhH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQY----GL-NTIVPL 112 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 112 (372)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+..++...|++++|...++++.+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45567778899999999999999998863 2233 46778888899999999999999888754 11 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---------CcchHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNK---------SVITWTTMIAGLALHGL-----------------GREALDMFSR 166 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 166 (372)
+..+...|...|++++|...|++..+. ...++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788899999999999999999876531 23478888899999999 9999998888
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 167 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 167 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
..+. +..+ ...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1111 2346777888899999999999999988753211112 23778889999999999999999987
Q ss_pred C-CC---CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 238 M-PF---EA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 238 ~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. .. .. ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 11 2456788888999999999999999999885432 234888999999999999999999998
Q ss_pred HHhC
Q 017414 304 MRDM 307 (372)
Q Consensus 304 m~~~ 307 (372)
....
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-13 Score=126.50 Aligned_cols=194 Identities=8% Similarity=0.024 Sum_probs=153.1
Q ss_pred chhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 109 IVPLNNALIDMYAK-------SGKIG-------KALQVFENMKN---K-SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 109 ~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 34445555555554 68876 89999998764 3 4578999999999999999999999999985
Q ss_pred CCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHH-HHhcCCHHHHHHHHhhC-CCCC-CH
Q 017414 171 RVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDL-LGRAGYLQEAEKLLRRM-PFEA-NA 244 (372)
Q Consensus 171 ~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~-~~~~g~~~~a~~~~~~~-~~~~-~~ 244 (372)
.|+ ...|..++..+.+.|++++|..+|++..+. +| +...|...+.. +...|+.++|..+|++. ...| +.
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 444 247888888888999999999999999953 33 33334333322 34689999999999987 3334 57
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc----hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG----NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..|..++..+...|+.++|..+|+++....|.++. .|...+......|+.+.+..+++++...
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998776655 7878888888999999999999988654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-14 Score=128.49 Aligned_cols=297 Identities=7% Similarity=-0.098 Sum_probs=213.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-----
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE-----------K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVE----- 69 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----- 69 (372)
....+||.+..++...|++++|++.|++..+ + ...+|+.+..+|...|++++|+..+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3466799999999999999999999987532 2 3467999999999999999999999887652
Q ss_pred C-CCC-CHHHHHHHHHHHHc--cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH---HhcCCHHHHHHHHHhccc---C
Q 017414 70 N-VKP-DEIAMLAALSACAQ--LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY---AKSGKIGKALQVFENMKN---K 139 (372)
Q Consensus 70 ~-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~ 139 (372)
+ ..+ ...++.....++.. .+++++|...|+++.+.. |.++..+..+..++ ...++.++|++.|++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 112 34566666555544 457899999999999875 44566666665553 456777888888887653 3
Q ss_pred CcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH
Q 017414 140 SVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215 (372)
Q Consensus 140 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (372)
+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...++++.+. .+.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 44566666555544 467889999999988764 445677888899999999999999999999853 24456677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 216 GCMIDLLGRA-------------------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 216 ~~li~~~~~~-------------------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
..+..+|... +.++.|...+++. ...| +...+..+...+...|++++|+..|+++++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7776665432 2356677777766 2233 45567888889999999999999999999988
Q ss_pred CCCcc---hHHHHHH-HHHHcCCchhHHHHHHHHHhC
Q 017414 275 PHNSG---NYAILSN-IYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|++.. .+..++. .+...|++++|+..|++....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 75432 2334443 345789999999999887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=116.34 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=173.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
+.+...+..++..+...|++++|.+.|++..+ .+..++..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34567788899999999999999999998764 356789999999999999999999999998874 34677888899
Q ss_pred HHhccc-CchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC
Q 017414 184 SACCHV-GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD 259 (372)
Q Consensus 184 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 259 (372)
..+... |++++|...++.+.+ .+..|+ ...+..+..++...|++++|...++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999986 233343 578888999999999999999999987 3334 57888999999999999
Q ss_pred hhHHHHHHHHHHHhCC-CCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 260 VELGECALQHLIKLEP-HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+++|...++++.+..| .++..+..+...+...|+.+.|..+++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88889999999999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=128.65 Aligned_cols=263 Identities=10% Similarity=-0.009 Sum_probs=165.1
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNN 114 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 114 (372)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.++ ...++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555666666666666655532 112 234445555566666666666665554432 1111 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCC--------------------hhHHHHHHH
Q 017414 115 ALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREALDMFS 165 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 165 (372)
.+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 566666666666666666665432 11 2256666666667777 677777766
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 166 RMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 166 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65432 1111 1345666777788888888888888877642111111 2367778888888899998888887
Q ss_pred hC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 237 RM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 237 ~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+. +..++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11112 456777788888999999999999988875432 13477888999999999999999998
Q ss_pred HHHhC
Q 017414 303 VMRDM 307 (372)
Q Consensus 303 ~m~~~ 307 (372)
+....
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-15 Score=121.59 Aligned_cols=197 Identities=9% Similarity=0.042 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 184 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 184 (372)
.....+..+...+...|++++|...|++..+ .+..++..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677888999999999999999998865 356788899999999999999999999998874 346778888999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 3456788899999999999999999999987 323 467788899999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|...++++.+..|.++.++..++.+|...|++++|.+.+++....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=131.53 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=210.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h----hhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-V----ISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 75 (372)
....+..+...+...|++++|+..|++..+ |+ . ..|..+...+...|++++|+..|++..+. +..| ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566788889999999999999998875 33 2 47889999999999999999999988653 1122 34
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY----GL-NTIVPLNNALIDMYAKSGK-----------------IGKALQVF 133 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 133 (372)
..+..+...+...|++++|...++++.+. +- +....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57778889999999999999999988754 11 2235578889999999999 99999998
Q ss_pred Hhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCchHHHHHHH
Q 017414 134 ENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARVK-PN----EITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 134 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
++..+ . ...++..+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 87643 1 2347888999999999999999999998764211 12 236778889999999999999999
Q ss_pred HHhHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CC----CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 200 NIMKSRYGIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EA----NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 200 ~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
+++.....-.. ...++..+...|...|++++|...+++. .. .+ ...++..+...+...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98875321111 1467788899999999999999999887 11 11 2346778888999999999999999
Q ss_pred HHHHHhCC
Q 017414 268 QHLIKLEP 275 (372)
Q Consensus 268 ~~~~~~~p 275 (372)
+++.++.+
T Consensus 367 ~~al~~~~ 374 (411)
T 4a1s_A 367 EQHLQLAX 374 (411)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99999765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=125.32 Aligned_cols=268 Identities=11% Similarity=0.005 Sum_probs=206.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-----VISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 75 (372)
+...+......+...|++++|...|++..+ |+ ...+..+...+...|++++|++.+++..+. +..| ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445666778889999999999999999865 32 357889999999999999999999987653 2122 24
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHHHHHHHHHHhcCC--------------------HHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQYGL-NTI----VPLNNALIDMYAKSGK--------------------IGKAL 130 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 130 (372)
.++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677888999999999999999998875421 111 3477888999999999 99999
Q ss_pred HHHHhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchHHHH
Q 017414 131 QVFENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 131 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..+++..+ . ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99887642 1 234788889999999999999999998875311 111 236778888999999999999
Q ss_pred HHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CC----CHHHHHHHHHHHHHcCChhHHH
Q 017414 197 RYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EA----NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
..+++..+...-..+ ..++..+...|...|++++|...+++. .. .. ...++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988743111111 467788889999999999999999887 11 11 2446778888999999999999
Q ss_pred HHHHHHHHhCC
Q 017414 265 CALQHLIKLEP 275 (372)
Q Consensus 265 ~~~~~~~~~~p 275 (372)
..++++.++.+
T Consensus 324 ~~~~~a~~~~~ 334 (338)
T 3ro2_A 324 HFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-13 Score=129.58 Aligned_cols=264 Identities=11% Similarity=0.094 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
+..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 4556666666666777777776666443 455566666666667777777777666655532 222222236666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+++++...+. + .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 66666433332 1 234444555677777777777777777664 36777777777777777777777654
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.. +..+ ...
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 244666666677777777777666554322 35556678888888899999999988776 5444 344
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHcCCchhHHH
Q 017414 246 IWGSLLAASNIY--GDVELGECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 246 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
.|..+..++.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+|+.|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 566666666654 344445555554433333 355678888999999999998884
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=132.10 Aligned_cols=208 Identities=9% Similarity=-0.071 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
++++...++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555432 44677888888999999999 999999988764 3467899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhccc---------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc--------CCHH
Q 017414 167 MERARVKPNEITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--------GYLQ 229 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 229 (372)
..+. .|+...+..+...+... |++++|...++++.+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9886 46678888899999999 9999999999999853 244678899999999988 9999
Q ss_pred HHHHHHhhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 230 EAEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 230 ~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
+|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4445 7788999999999999999999999999999999999999999999999999999875543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-13 Score=128.38 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-------------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE-------------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
.-+...+...|.+++|..+|++... .+..+|..+..++.+.|++++|+..|.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 3355666666666666666666532 23456777777777777777777777543
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHH
Q 017414 68 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTM 147 (372)
Q Consensus 68 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 147 (372)
-|...|..++.++.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 355667777777777777777777777766653 33333334777777777777544332 34455566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +..+|..+..+|...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 77777788888888877763 367777777777788888877777664 45677777777777888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 228 LQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
+..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|.+. +.++..+.+
T Consensus 1266 f~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEhl 1336 (1630)
T 1xi4_A 1266 FRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 1336 (1630)
T ss_pred HHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHHH
Confidence 87777766643 345566778888999999999999999999999998888998888888775 333333333
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=108.60 Aligned_cols=165 Identities=15% Similarity=0.076 Sum_probs=123.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 219 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 219 (372)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34567777777777777777777777777653 235566777777777888888888888777743 234556666777
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 297 (372)
..+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877776 2233 5667777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 017414 298 GKIRKVMRDM 307 (372)
Q Consensus 298 ~~~~~~m~~~ 307 (372)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888877553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-13 Score=117.86 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-Ccc-hHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVI-TWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
++|..+|++.++.-.+.+...|..++..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|.++|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555521122344555555555555555555555555443 2 122 5555555555666666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHh-cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C---CCC
Q 017414 168 ERARVKPNEITFIAILSAC-CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA 242 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~---~~~ 242 (372)
.+.+ +++...|....... ...|+.++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5542 12222332222221 12466666666666666431 234556666666666666666666666665 1 233
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 243 --NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 243 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
....|..++......|+.+.|..+++++.+..|.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 34456666666666666666666666666666653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=125.62 Aligned_cols=286 Identities=8% Similarity=-0.037 Sum_probs=203.1
Q ss_pred HHHhcCCHHHHHHHHhccCC------CC--hhhHHHHHHH--HHhCCCccHHH-----------HHHHHHHhCCCCCCHH
Q 017414 18 GYAKVGDLNNARALFELMTE------KN--VISWTTLIAG--YAQMDQPNEAI-----------TLFRRMQVENVKPDEI 76 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~------~~--~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~m~~~~~~p~~~ 76 (372)
.+.+.+++++|..+++++.+ .| ...|..++.. ..-.+..+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 34679999999999988753 22 3333443322 11223333333 6666665421 2222
Q ss_pred HH------HHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC
Q 017414 77 AM------LAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS 140 (372)
Q Consensus 77 ~~------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 140 (372)
.+ ......+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 22 22566778899999999999999864 2112 346788899999999999999999987653 11
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchHHHHHHHHHhHHh---cC
Q 017414 141 -----VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSR---YG 207 (372)
Q Consensus 141 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 207 (372)
..+++.+..+|...|++++|++.+++..+... .++ ..++..+...|...|++++|...+++..+- .+
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 24788899999999999999999998875311 111 247788899999999999999999988751 12
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-----CC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCCC
Q 017414 208 I-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-----EA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH 276 (372)
Q Consensus 208 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-----~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~ 276 (372)
. +....++..+..+|...|++++|...+++. .. .| ....+..+...+...|+ .++|..++++. ...|.
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~ 337 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD 337 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH
Confidence 2 334577889999999999999999999887 11 12 22335666777888888 66666666665 22233
Q ss_pred CcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 277 NSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
....+..++..|...|++++|...+++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455788999999999999999999998854
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-12 Score=111.54 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHHHhc----CCH----HHHHHHHhccCC---CChhhHHHHHHHHH-------hCCCc-------cHHHH
Q 017414 7 LLYKFWNTMVAGYAKV----GDL----NNARALFELMTE---KNVISWTTLIAGYA-------QMDQP-------NEAIT 61 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~A~~ 61 (372)
.+...|...+....+. ++. ++|..+|++..+ .++..|..++..+. +.|++ ++|..
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3445566666654443 222 556666666654 24556666666554 24665 66777
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hh-HHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 62 LFRRMQVENVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI-VP-LNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 62 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
+|++..+. +.| +...|..++..+.+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+
T Consensus 86 ~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 86 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77766652 123 4446666666666667777777777766663 232 32 566666666667777777777766554
Q ss_pred C---CcchHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc--CH
Q 017414 139 K---SVITWTTMIAGLA-LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KI 212 (372)
Q Consensus 139 ~---~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 212 (372)
. +...|...+.... ..|++++|.++|++..+.. +-+...+..++..+.+.|++++|..+|+++.....++| ..
T Consensus 163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 2 2223332222211 2566777777777666542 22455566666666666777777777777664312343 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..|..++..+.+.|+.+.|..+++++
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666667777777666665
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=123.02 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=121.9
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL 106 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 106 (372)
..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++++.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777777788888888888888777662 11223455666777777777777777777776653 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 017414 107 -NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA---- 170 (372)
Q Consensus 107 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 170 (372)
+....++..+...|...|++++|...|++..+. ...++..+...+...|++++|++++++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223455666667777777777777766654421 1234455555555555566665555555442
Q ss_pred --CCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhc------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 017414 171 --RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY------GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241 (372)
Q Consensus 171 --~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (372)
+..|. ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11111 2344445555555555555555555555310 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
....+..+...+...+.+.++...++......|....++..++.+|...|++++|.+.+++..
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111122223333444555555555555555555666666666666666666666666553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-13 Score=105.04 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
++.+|..+...|.+.|++++|+..|++..+ | +..+|..+..++.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677777777777777777777776654 2 45566777777777777777777777766543 3345555566666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+...++++.+...+....+.. +.+...+..+..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 667777777777777766653 44556666666677777777777776666543 23456666666666666666666
Q ss_pred HHHHHHHHc
Q 017414 162 DMFSRMERA 170 (372)
Q Consensus 162 ~~~~~~~~~ 170 (372)
+.|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=121.38 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=78.5
Q ss_pred HHHHHhcccCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----CchHHHHHHHHHh
Q 017414 130 LQVFENMKNKSVITWTTMIAGLALHG---LGREALDMFSRMERARVKPNEITFIAILSACCHV----GLVELGRRYFNIM 202 (372)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~ 202 (372)
..+++.....++.++..+...|...| ++++|++.|++..+.| .++...+..+...|... +++++|..+|++.
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 33344444445555666666666666 5666666666665554 23333333344444333 4555555555554
Q ss_pred HHhcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHhC
Q 017414 203 KSRYGIEPKIEQYGCMIDL-L--GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG-----DVELGECALQHLIKLE 274 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 274 (372)
. . + ++..+..|... | ...+++++|...|++.-..-+...+..|...|. .| ++++|...|+++.
T Consensus 244 a-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 244 A-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp G-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred c-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 4 1 1 23333334433 2 234555555555554411123344444444443 23 4555555555544
Q ss_pred CCCcchHHHHHHHHHH----cCCchhHHHHHHHHHhC
Q 017414 275 PHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 307 (372)
|.++..+..|+..|.. ..++++|...|++..+.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 4444455555544443 22455555555544443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-11 Score=108.15 Aligned_cols=264 Identities=14% Similarity=0.032 Sum_probs=171.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AMLAALSACAQLGAVELGEWIHNYIEQYGL-NTI----VPLN 113 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 113 (372)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344455667788888888887776653222222 345556667777888888887777664311 011 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C--CHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKN----------K-SVITWTTMIAGLALHGLGREALDMFSRMERARVK--P--NEIT 178 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~ 178 (372)
..+...+...|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5677778888888888888776542 1 1134566777788888888888888887754221 1 2345
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH-----HHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-----CMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIW 247 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~ 247 (372)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888899999888888764311111111111 2334467889999999988887 22221 2245
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCC-----C-cchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPH-----N-SGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+...+...|++++|...++.+.+..+. . ..++..+..++...|++++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888889999999998888764321 1 13666778888899999999988887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=117.49 Aligned_cols=300 Identities=8% Similarity=-0.034 Sum_probs=206.7
Q ss_pred CccHHHHHHHHHHH--HhcCCHHHHHHHHhccCC------C--ChhhHHHHHHHH--HhCCCccHHH---------HHHH
Q 017414 6 RLLYKFWNTMVAGY--AKVGDLNNARALFELMTE------K--NVISWTTLIAGY--AQMDQPNEAI---------TLFR 64 (372)
Q Consensus 6 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~--~~~~~~~~A~---------~~~~ 64 (372)
-|+..+-+.|-+.| .+.+++++|..+++++.+ . +...|..|+..- .-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35666667777777 789999999999987643 2 233444444321 1112233333 6666
Q ss_pred HHHhCCCCCCH-H---HHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 65 RMQVENVKPDE-I---AMLAALSACAQLGAVELGEWIHNYIEQYG--LN---TIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 65 ~m~~~~~~p~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
.+.....+.+. . .+......+...|++++|...++++.+.. ++ ....++..+..+|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65442211111 1 22334556778999999999999988642 11 1246778899999999999999999887
Q ss_pred ccc-----CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 136 MKN-----KS-----VITWTTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 136 ~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
..+ ++ ..+++.+..+|...|++++|++.|++..+. +..+ ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 12 347888999999999999999999988763 1111 23467788899999999999999999
Q ss_pred HhHHhc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHH
Q 017414 201 IMKSRY---GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PF--EAN-AAIWGSLLAASNIYGD---VELGECAL 267 (372)
Q Consensus 201 ~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~--~~~-~~~~~~l~~~~~~~~~---~~~a~~~~ 267 (372)
+..+-. +.+....++..+..+|.+.|++++|...+++. .. .|. ...+..+...+...++ ..+|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 988511 22233677888999999999999999999887 11 222 3345555556667777 66666666
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++.. ..|.....+..++..|...|++++|...|++...
T Consensus 327 ~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6521 1233445778899999999999999999988743
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=120.01 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=164.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--------K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVE---- 69 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 69 (372)
++.+..++..+...+...|++++|..+|+++.+ . ...++..+...+...|++++|+..|++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999998765 1 2357888999999999999999999998764
Q ss_pred --CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 70 --NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQY------GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 70 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
+-.| ...++..+...+...|++++|...++++.+. +..| ....+..+...|...|++++|.++|++..+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2223 3567888999999999999999999998865 2222 4567888999999999999999999887532
Q ss_pred --------C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 140 --------S---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 140 --------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
+ ..++..+...|...|++++|.+.++++.+.. |+. .+..+- .......
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~--------------- 241 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW--------------- 241 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH---------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH---------------
Confidence 2 3478889999999999999999999998751 110 000000 0000000
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.....+..+...+...+.+.++...++.. ...| +..++..+..++...|++++|...++++.++.|
T Consensus 242 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 242 -MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 00111122222333344444445555444 2222 334566666666777777777777777666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-13 Score=120.29 Aligned_cols=208 Identities=8% Similarity=-0.036 Sum_probs=147.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 134 (372)
+++++..+++..... +.+...+..+..++...|++ ++|...++++.+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666776665532 34666777777777778888 88888888777764 4456777777888888888888888887
Q ss_pred hccc--CCcchHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc--------CchHHH
Q 017414 135 NMKN--KSVITWTTMIAGLALH---------GLGREALDMFSRMERARVKPNEITFIAILSACCHV--------GLVELG 195 (372)
Q Consensus 135 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a 195 (372)
+..+ |+..++..+...|... |++++|++.|++..+.. +.+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 7654 4456677777777777 78888888888877763 33466777777777777 778888
Q ss_pred HHHHHHhHHhcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 017414 196 RRYFNIMKSRYGIE---PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQ 268 (372)
Q Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 268 (372)
...|+++.+. -+ .+...|..+..+|...|++++|...|++. ...| +...+..+..++...|++++|...+.
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887743 12 36677778888888888888888888776 3334 45567777777777777777776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-13 Score=124.64 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=121.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...|+++.+- -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3466667777777777777777777776653 224566777777777777777777777777742 1234677777788
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..|+.++...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888776 4444 56678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHH
Q 017414 299 KIRKVMR 305 (372)
Q Consensus 299 ~~~~~m~ 305 (372)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-12 Score=111.49 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=181.1
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC------CCchhHH
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL------NTIVPLN 113 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 113 (372)
.....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... +....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3667788999999999999999764 1112 235788889999999999999999999886411 1124578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA----RV-KPNEITF 179 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~ 179 (372)
+.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|++.+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8899999999999999999988763 11 147888999999999999999999998872 23 3345678
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhc---CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCC-HHHHHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEAN-AAIWGSLLA 252 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~l~~ 252 (372)
..+...+...|++++|...+++..+-. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 889999999999999999999887431 112223345678888889999 8999999999854443 346777888
Q ss_pred HHHHcCChhHHHHHHHHHHHhC
Q 017414 253 ASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.|...|++++|...++++.++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998844
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-12 Score=99.97 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 188 (372)
.+..+...+...|++++|...|+++.+. +..++..+...+...|++++|...++++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 3444555555556666666655555432 23344444445555555555555555544431
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
+.+...+..+...+...|++++|.+.++++ . ...+...+..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 223344444445555555555555555444 1 112344555555556666666666666
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++++.+..|.++.++..++.++...|++++|.+.+++...
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=96.87 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 355677788888888888888888888775 355677778888888888888888888877653 3456677777777
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+ .+..++..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888887777664 44566666667777777777777777666543 23445566666666666666666
Q ss_pred HHHHHHHH
Q 017414 162 DMFSRMER 169 (372)
Q Consensus 162 ~~~~~~~~ 169 (372)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-12 Score=101.57 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHH
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIA 149 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 149 (372)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888899999999999999999999999864377777777999999999999999999988753 4468889999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC---HHHHHHHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNE-------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 219 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 219 (372)
+|...|++++|++.+++..+.. +.+. ..+..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998864 2234 4577778888899999999999999984 3554 56777888
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
.+|...|+. .++++ . ...+...+.... ....+.+++|...++++.++.|.++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888766543 22222 1 122344444433 3345678999999999999999988776666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=106.44 Aligned_cols=263 Identities=11% Similarity=-0.024 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C--Ch----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCH----HH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--K--NV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDE----IA 77 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~ 77 (372)
.+......+...|++++|...+++... | +. .+++.+...+...|++++|...+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445556677789999999999887543 2 22 2567778889999999999999998865311 1122 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C------Ccc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQY----GLN--T-IVPLNNALIDMYAKSGKIGKALQVFENMKN--K------SVI 142 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~ 142 (372)
+..+...+...|++++|...++...+. +.+ | ....+..+...+...|++++|...+++..+ + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778889999999999999988753 222 2 245567788999999999999999987653 1 124
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhcccCchHHHHHHHHHhHHhcCCCc---CHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFI----AILSACCHVGLVELGRRYFNIMKSRYGIEP---KIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 213 (372)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++..... ...+ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~ 254 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHH
Confidence 677888899999999999999999876421211 11111 2334477899999999999998742 2111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.+..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++....
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5667888999999999999999876 111122 255666778899999999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=117.44 Aligned_cols=279 Identities=16% Similarity=0.071 Sum_probs=188.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHHHHhCCCc---cHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQP---NEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.+...+.+.|++++|.++|.+..+ .+..++..|...|...|++ ++|++.|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 367788899999999999999876 4566777788888888888 8999999998753 4555666666455554
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHhcc-cCCcchHHHHHHHHHhcCChhHH
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK---ALQVFENMK-NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
+.++|...|++..+.|. ++ .+..|...|...+..++ +.+.+.... ..+..++..+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 78899999999999763 33 56668888887765444 444444443 34677888999999998866655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcccC---chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc----CCHHHHHH
Q 017414 161 LDMFSRMERARVKPNEITFIAILSACCHVG---LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA----GYLQEAEK 233 (372)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 233 (372)
........+.-...+...+..+...|...| +.++|...|++..+. + +++...+..+...|... +++++|..
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 555333332211222236777888888899 999999999999863 3 55666667788888655 79999999
Q ss_pred HHhhCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-----CchhHHHHHHHHH
Q 017414 234 LLRRMPFEANAAIWGSLLAA-S--NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-----RWNESGKIRKVMR 305 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~ 305 (372)
.|++.- .-+...+..+... + ...+++++|...|+++.+.+ ++.++..|+..|. .| ++++|.+.|++..
T Consensus 239 ~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 999986 4567777777776 4 56899999999999998765 6778999999988 55 9999999998765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=120.85 Aligned_cols=163 Identities=11% Similarity=0.040 Sum_probs=144.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.|.+..+|+.+..+|.+.|++++|+..|++..+ | +..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 466789999999999999999999999999875 4 57789999999999999999999999999853 3357789999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
..++...|++++|.+.|+++.+.. +.+...|+.+..+|.+.|++++|++.|++..+ .+..+|..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999999875 55688899999999999999999999998764 35678999999999999999
Q ss_pred HHHHHHHHHHH
Q 017414 159 EALDMFSRMER 169 (372)
Q Consensus 159 ~a~~~~~~~~~ 169 (372)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-12 Score=103.04 Aligned_cols=190 Identities=12% Similarity=-0.044 Sum_probs=137.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
.++..+..+...+...|++++|...|++..+ ++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3557777788888889999999998887653 455667778888888999999999998888763 22456777788
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHH
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKI-------EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLA 252 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~ 252 (372)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|...|++. ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8888889999999988888853 22334 45777778888888888888888887 55665 345666666
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++... +...++++..+.+.++..|..+ .....+.+++|...+++....
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 66543 4455667777766555455443 344556789999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-11 Score=103.85 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=178.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CC-chh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL-----NT-IVP 111 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~ 111 (372)
|......+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455667889999999999999876411 122 34677888999999999999999998875411 11 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMER-----ARVKPNEI 177 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~ 177 (372)
+++.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|++.+++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 678899999999999999999987753 12 24788899999999999999999999887 42 22367
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCC---CcCHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCH-HHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEANA-AIWGSL 250 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~l 250 (372)
++..+...+.+.|++++|...+++..+-..- +.....+..+...|...|+ +.+|+..+++.+..|+. ..+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888999999999999999999998864222 2223455666677778888 89999999987544433 456678
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh
Q 017414 251 LAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...|...|++++|...++++.+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-12 Score=104.92 Aligned_cols=153 Identities=11% Similarity=0.033 Sum_probs=83.5
Q ss_pred HhCCCccHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNAL 116 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 116 (372)
...|++++|+..|++..+. ..+....++..+..++...|++++|...++.+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 11123445666777777777777777777776643 11 1234556666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA------RVKP-NEIT 178 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~ 178 (372)
..+|...|++++|...|++..+. ...++..+...|...|++++|+..+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 67777777777777666654321 1234455555555555555555555555443 1111 1234
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+..+...|...|++++|..+++++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=102.42 Aligned_cols=191 Identities=12% Similarity=-0.035 Sum_probs=88.1
Q ss_pred HHccCChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----cchHHHHHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQY----GLNTI-VPLNNALIDMYAKSGKIGKALQVFENMKNK-----S----VITWTTMIAG 150 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~ 150 (372)
+...|++++|...+.+..+. |-++. ..+|+.+..+|.+.|++++|+..|++..+- + ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555444432 11111 234445555555555555555555444321 1 1245555555
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-----HHHHHHH
Q 017414 151 LALH-GLGREALDMFSRMERARVK-PN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-----EQYGCMI 219 (372)
Q Consensus 151 ~~~~-~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li 219 (372)
|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|+++.+...-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6554 6666666666655542100 00 2345555566666666666666666665321111111 1345555
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCHH------HHHHHHHHHH--HcCChhHHHHHHHHHHHhCC
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEANAA------IWGSLLAASN--IYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p 275 (372)
.++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|...|+.+..++|
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 5666666666666666665 3333221 1223333332 23445555555555544444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-10 Score=92.58 Aligned_cols=241 Identities=10% Similarity=-0.002 Sum_probs=169.5
Q ss_pred HHHHhcCCHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 17 AGYAKVGDLNNARALFELMTEKN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
.-..-.|++..++.-...+...+ ...-.-+.+++...|++... ..-.|....+..+.. |...+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 33445789999888666665422 23334455888888888752 122445444433333 33322 66
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..+++..+.+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777777665 455556668889999999999999999987543 4467888899999999999999999999876
Q ss_pred CCCC-----CHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 171 RVKP-----NEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 171 ~~~p-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.| +..+...++.++. ..++...|..+|+++.++ .|+..+-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56 3555666665532 234899999999999854 455333344445889999999999999865 21
Q ss_pred ----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 241 ----------EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 241 ----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.| ++.+...+|......|+ +|.++++++.+..|+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 55666577776777786 889999999999998873
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=97.67 Aligned_cols=206 Identities=14% Similarity=0.031 Sum_probs=153.6
Q ss_pred CHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 017414 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
++++|...|+. .+..|...|++++|++.|.+..+. |-+++ ..+|+.+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46777766655 466788899999999999988653 32222 467889999999999999999999
Q ss_pred HHHHHcCC---CC--chhHHHHHHHHHHhc-CCHHHHHHHHHhcccC-----C----cchHHHHHHHHHhcCChhHHHHH
Q 017414 99 NYIEQYGL---NT--IVPLNNALIDMYAKS-GKIGKALQVFENMKNK-----S----VITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 99 ~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
++..+... .+ ...+++.+..+|... |++++|+..|++..+. + ..++..+...+.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 98876421 11 145788899999996 9999999999987641 1 34688899999999999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH------HHHHHHHHHHH--hcCCHH
Q 017414 164 FSRMERARVKPNE------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI------EQYGCMIDLLG--RAGYLQ 229 (372)
Q Consensus 164 ~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~ 229 (372)
|++..+....... ..+..+..++...|++++|...|++.. .+.|+. ..+..++.++. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999986433222 156677788889999999999999998 334432 13444566664 467899
Q ss_pred HHHHHHhhC-CCCCC
Q 017414 230 EAEKLLRRM-PFEAN 243 (372)
Q Consensus 230 ~a~~~~~~~-~~~~~ 243 (372)
+|+..|+++ ...|.
T Consensus 258 ~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHTTSSCCCHH
T ss_pred HHHHHhccCCccHHH
Confidence 999999887 54443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-10 Score=93.62 Aligned_cols=239 Identities=7% Similarity=-0.015 Sum_probs=169.5
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+-..-.|++..++.-..++.. ........-+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344567889888874433321 22223333456788888877642 112333334443333 34433
Q ss_pred HHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 128 KALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 128 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
|+..|++... ++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7788887663 44556678888999999999999999998776532 355677788899999999999999999998
Q ss_pred HhcCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 204 SRYGIEP-----KIEQYGCMIDL--LGRAG--YLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 204 ~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+...++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 56 35555666655 33334 899999999999 44566444445555889999999999999988775
Q ss_pred ----------CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 274 ----------EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 274 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|.++.+...++.+....|+ +|.+++++++...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899899888888888887 8899999997753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-11 Score=98.90 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=104.7
Q ss_pred HhcCCHHHHHHHHhccCC-------C----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 017414 20 AKVGDLNNARALFELMTE-------K----NVISWTTLIAGYAQMDQPNEAITLFRRMQVE------NVKP-DEIAMLAA 81 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l 81 (372)
...|++++|+..|++..+ + ...++..+...+...|++++|+..|+++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666655442 2 2456778888888888888888888887653 2123 34567777
Q ss_pred HHHHHccCChHHHHHHHHHHHHc------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C---cch
Q 017414 82 LSACAQLGAVELGEWIHNYIEQY------G-LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------S---VIT 143 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~ 143 (372)
..++...|++++|...++++.+. . .+....++..+...|...|++++|...|++..+. + ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888877754 1 1223566777888888888888888888776532 2 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
+..+...|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-10 Score=93.02 Aligned_cols=207 Identities=8% Similarity=-0.010 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN-EITF 179 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~ 179 (372)
.+...+..+...+.+.|++++|...|+++.+ | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456666778888888888888888888764 2 2 35677788888888888888888888887532 122 3455
Q ss_pred HHHHHHhcc--------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 017414 180 IAILSACCH--------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251 (372)
Q Consensus 180 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~ 251 (372)
..+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 666667777 888888888888887542 22222222221111111111 11256677
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHc----------CCchhHHHHHHHHHhCCCccCCceeEE
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAIL----------GRWNESGKIRKVMRDMGVKKMPGCSYI 318 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ 318 (372)
..+...|++++|+..++++.+..|.++ ..+..++.+|... |++++|...++++.....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999998744 4788888999876 889999999998865421
Q ss_pred EeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 017414 319 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354 (372)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 354 (372)
.++...++...+.++.+.+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2455667777777777666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=95.71 Aligned_cols=203 Identities=11% Similarity=0.030 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---cc
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VI 142 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 142 (372)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777888899999999999999999999874 333 66788899999999999999999999875 3 2 24
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH
Q 017414 143 TWTTMIAGLAL--------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (372)
++..+..++.. .|++++|+..|+++.+.. |+. ..... ...+..+... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67788888988 999999999999998863 332 11111 1111111111 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhCCCCc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+..+...|...|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556788888999999999999887 22333 44667777777766 888999999999999999876
Q ss_pred c---hHHHHHHHHHHcCCchh
Q 017414 279 G---NYAILSNIYAILGRWNE 296 (372)
Q Consensus 279 ~---~~~~l~~~~~~~g~~~~ 296 (372)
. +...+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 3 33344444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-10 Score=89.23 Aligned_cols=184 Identities=12% Similarity=-0.001 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCc----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CH-HHHHH
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKN--KSV----ITWTTMIAGLALHGLGREALDMFSRMERARVKP-NE-ITFIA 181 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~-~~~~~ 181 (372)
...+..++..+.+.|++++|...|+++.+ |+. .++..+..+|.+.|++++|+..|+++.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455677888888999999999998764 322 467778888899999999999999988763221 11 23444
Q ss_pred HHHHhcc------------------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 017414 182 ILSACCH------------------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 243 (372)
Q Consensus 182 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 243 (372)
+..++.. .|++++|...|+++.+. .+-+...+........ .. ..+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~------~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LK------DRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HH------HHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HH------HHH-----
Confidence 4444433 45667777777776642 1222222221111000 00 000
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 244 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
......+...+...|++++|...++++++..|.++ .++..++.++.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999875 56889999999999999999999998876554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=92.25 Aligned_cols=142 Identities=9% Similarity=-0.023 Sum_probs=101.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|...|+++.+. -+-+...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445566777777777765543 232 334556777788888888888888887743 2345677888888888888
Q ss_pred CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH-HHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 227 YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGEC-ALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++++|...|++. .+.| +...+..+...+...|+++++.. +++++.+++|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888876 4445 56678888888888888876554 4688888999888888888888777764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-10 Score=81.76 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCC
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 259 (372)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444421 1223334444444444444444444444444 11 1233444455555555555
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+++|...++++.+..|.++.++..++.++...|++++|.+.++++..
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55566666555555555555555566666666666666666555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=80.41 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45666777777777777777777776653 235566666777777778888888888777743 234566677777788
Q ss_pred HhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 223 GRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
...|++++|.+.++++ .. ..+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 22 235667777777888888888888888888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.6e-10 Score=92.53 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=137.4
Q ss_pred HHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 126 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3445555555555556677788888899999999999999988864 335677888888999999999999999998743
Q ss_pred cCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC--cch
Q 017414 206 YGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGN 280 (372)
Q Consensus 206 ~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 280 (372)
.|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233466777788888888776 3344 67788889999999999999999999999999987 778
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+..++..+...|+.++|...+++-.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=102.97 Aligned_cols=166 Identities=11% Similarity=-0.034 Sum_probs=83.8
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 86 AQLGAVELGEWIHNYIE--------QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|...|++..+ .+..+|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 221 33344455555555555555555555555442 2334555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555542 1133444555555555555555 5555555532 122345555555555556666666655
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHHH
Q 017414 235 LRRM-PFEAN-AAIWGSLLAASNI 256 (372)
Q Consensus 235 ~~~~-~~~~~-~~~~~~l~~~~~~ 256 (372)
|++. ...|+ ...+..+..++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 5555 34443 2334444444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=87.45 Aligned_cols=127 Identities=11% Similarity=-0.014 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL- 191 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 191 (372)
+..+|.+.|++++|+..|++..+ .+..+|..+..++...|++++|+..|++..+.. +.+..++..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 44444444555555444444432 123344444445555555555555555544432 1223344444444333322
Q ss_pred -hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 192 -VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 192 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
.+.+...++... ...|....+.....++...|++++|...|++. ...|+...
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 222333333332 11121222223333444445555555555544 44444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=86.92 Aligned_cols=158 Identities=10% Similarity=0.011 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHH----------------HHHHHHhCCCccHHHHHHHHHHhCC
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTT----------------LIAGYAQMDQPNEAITLFRRMQVEN 70 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~ 70 (372)
..+-.....+.+.|++++|+..|+...+. +...|.. +..++.+.|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444555666777777777777766542 2233444 5555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHHhcccCCcc--hHHH
Q 017414 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK--IGKALQVFENMKNKSVI--TWTT 146 (372)
Q Consensus 71 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~ 146 (372)
+-+...+..+..++...|++++|...|+++.+.. |.+...+..+..+|...|+ ...+...++....++.. .+..
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 2244455555555555555555555555555543 3344455555555443332 23334444444433322 2222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
...++...|++++|+..|++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33334444555555555555444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=85.18 Aligned_cols=157 Identities=14% Similarity=0.020 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-C 85 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~ 85 (372)
..+......+.+.|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4456678889999999999999999886 356789999999999999999999999887653 454433322222 1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----cchHHHHHHHHHhcCChhHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-----VITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a 160 (372)
...+....+...++...+.. |.+...+..+..++...|++++|...|+++.+.+ ...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677888888764 4567788888888888999999998888876432 34788888888888888888
Q ss_pred HHHHHHHHH
Q 017414 161 LDMFSRMER 169 (372)
Q Consensus 161 ~~~~~~~~~ 169 (372)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-09 Score=101.74 Aligned_cols=169 Identities=11% Similarity=-0.053 Sum_probs=125.7
Q ss_pred HhcCCHHHHHHHHHhcc-----------cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 121 AKSGKIGKALQVFENMK-----------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
...|++++|++.|++.. ..+...+..+..++...|++++|++.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888766 2345677788888888888888888888887763 33566777777788888
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
|++++|...|+++.+. -+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888743 13356777788888888888888 8888776 3334 5667778888888888888888888
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
+++.+++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877788888777765444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.3e-09 Score=82.59 Aligned_cols=173 Identities=8% Similarity=-0.136 Sum_probs=117.6
Q ss_pred HHHHHHhccc-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----chHHHHHHHHHhH
Q 017414 129 ALQVFENMKN-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----LVELGRRYFNIMK 203 (372)
Q Consensus 129 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 203 (372)
|.+.|++..+ .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 345566666666666777777777777776654 44556666666666 5 7778888887776
Q ss_pred HhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNI----YGDVELGECALQHLI 271 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 271 (372)
+. -++..+..|...|.. .+++++|...|++. ...|+ ...+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 255666677777766 67788888888776 33343 6677777777777 678888888888888
Q ss_pred HhCCCCcchHHHHHHHHHHc-C-----CchhHHHHHHHHHhCCCc
Q 017414 272 KLEPHNSGNYAILSNIYAIL-G-----RWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 272 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~~ 310 (372)
+. |.++..+..|+.+|... | ++++|...|++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77 44666778888887654 3 788888888887766643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=93.12 Aligned_cols=179 Identities=12% Similarity=-0.002 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-----C----cchHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKNK-----S----VITWTTMIAGLALHGLGREALDMFSRMERAR---VKPN--EITFIAIL 183 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~ 183 (372)
..|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666665554321 1 2356667777777777777777777765431 0111 34666777
Q ss_pred HHhcccCchHHHHHHHHHhHHhcC---CCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CCC----HHHHHHHH
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYG---IEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EAN----AAIWGSLL 251 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~~----~~~~~~l~ 251 (372)
..|.. |++++|...|++..+-.. ..+ ...++..+...|...|++++|+..|++. .+ .++ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77877 888888888888774311 000 1456777888888999999998888876 11 111 22555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcch-----HHHHHHHHHHcCCchhHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGN-----YAILSNIYAILGRWNESGK 299 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 299 (372)
.++...|++++|...++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777899999999999998 87754432 33444444 5666665555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=84.91 Aligned_cols=122 Identities=10% Similarity=-0.067 Sum_probs=102.0
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 258 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 258 (372)
|...+...|++++|...+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45667788999999999998873 344 3456677899999999999999999998 4455 6788999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH-HHHHHh
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI-RKVMRD 306 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 306 (372)
++++|+..++++.+++|.++.++..++.+|.+.|++++|.+. +++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=85.68 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=47.0
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC--cchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|...+++. ...| +...+..+..++...|++++|...++++.+.+|.. +..+..++.++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 34444443 2233 45566666666777777777777777777766643 4466777777777777777777666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-09 Score=99.86 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998875 345789999999999999999999999998864 345778888999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhC
Q 017414 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLE 274 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 274 (372)
+++.+. .+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2446788999999999999999999999997 3344 577888899999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 017414 275 PHNSGNYAILS 285 (372)
Q Consensus 275 p~~~~~~~~l~ 285 (372)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888887765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-09 Score=83.65 Aligned_cols=129 Identities=15% Similarity=-0.053 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
+...+..+...+...|++++|+..|++...++...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 344566677778888888888888888877777788888888888888888888888887753 3456677777788888
Q ss_pred cCChHHHHHHHHHHHHcCCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV----------------PLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
.|++++|...++.+.+.. +.+. ..+..+..+|...|++++|...|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888888888877753 2222 4444555555555555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-07 Score=78.40 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=169.0
Q ss_pred hCCC-ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc-
Q 017414 52 QMDQ-PNEAITLFRRMQVENVKPDEIAMLAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLNNALIDMY----AKS- 123 (372)
Q Consensus 52 ~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 123 (372)
+.|. .++|++++.+++..+ +-+...|+.--.++...+ +++++...++.+.... +.+..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 468999999998853 234556787777888888 8999999999999875 55667776655555 555
Q ss_pred --CCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-----
Q 017414 124 --GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR--EALDMFSRMERARVKPNEITFIAILSACCHVGL----- 191 (372)
Q Consensus 124 --g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----- 191 (372)
+++++++.+++++.+ .+..+|+.-..++.+.|.++ ++++.++++.+.+. -|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 788999999988875 35567777778888888888 99999999988754 366677665555556665
Q ss_pred -hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH-HHHHHHhhC-CC----CCCHHHHHHHHHHHHHcCChhHHH
Q 017414 192 -VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ-EAEKLLRRM-PF----EANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 192 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++++.+.++.+... -+-|...|+.+...+.+.|+.. .+..+..++ .. ..++..+..+...+.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 78888888888853 3557788888888887777744 355566665 22 236777888888888889999999
Q ss_pred HHHHHHHH-hCCCCcchHHHHH
Q 017414 265 CALQHLIK-LEPHNSGNYAILS 285 (372)
Q Consensus 265 ~~~~~~~~-~~p~~~~~~~~l~ 285 (372)
++++.+.+ .+|.....|...+
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHH
Confidence 99999886 7887766666544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=84.46 Aligned_cols=185 Identities=11% Similarity=-0.061 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCc-c---hHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV-I---TWT 145 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~ 145 (372)
+...+..+...+.+.|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+ |+. . ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677888999999999999999999864211 135677889999999999999999999874 332 2 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCchHHHHHHHHHhHHhc
Q 017414 146 TMIAGLAL------------------HGLGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRY 206 (372)
Q Consensus 146 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 206 (372)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 56666654 57899999999999886 34432 2211110 001111111
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678888999999999999987 33343 246778888999999999999999999888887543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-07 Score=88.47 Aligned_cols=134 Identities=4% Similarity=0.055 Sum_probs=91.4
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCC---ccHHHHHHHHHHhCC-CCCCHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQ---PNEAITLFRRMQVEN-VKPDEI 76 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~-~~p~~~ 76 (372)
-.|.|..+|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.++ ++.+.++|++.+... .+|+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3567899999999999999999999999999886 3 45677777887888888 999999999998753 137888
Q ss_pred HHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhc
Q 017414 77 AMLAALSACAQLGAV--------ELGEWIHNYIEQ-YGL-NT-IVPLNNALIDMYAK---------SGKIGKALQVFENM 136 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 136 (372)
.|..-+....+.++. +.+.++|+.++. .|. .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777655554443 334467776654 355 44 34566666654332 23345555555554
Q ss_pred c
Q 017414 137 K 137 (372)
Q Consensus 137 ~ 137 (372)
.
T Consensus 221 L 221 (679)
T 4e6h_A 221 L 221 (679)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.1e-09 Score=86.85 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=83.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI-AIL 183 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~ 183 (372)
.+...+..+...+...|++++|...|++..+ .+..++..+...+.+.|++++|...++++... .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3344444555555556666666666555442 23345555555566666666666666555443 23322211 112
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNIYGD 259 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~ 259 (372)
..+...++.+.|...+++.... -+.+...+..+...|...|++++|...|+++ ...|+ ...+..+...+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2234445555556666555532 2334555566666666666666666666655 22232 4456666666666666
Q ss_pred hhHHHHHHHHHH
Q 017414 260 VELGECALQHLI 271 (372)
Q Consensus 260 ~~~a~~~~~~~~ 271 (372)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666665554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-08 Score=93.70 Aligned_cols=216 Identities=9% Similarity=0.007 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE-WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
++..+|++.+.. .+-....|...+..+.+.|+.++|. .+++..... .|.+...|..++....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667777664 3456777888888888889999996 999999875 3667777888999999999999999999987
Q ss_pred cc-------------CC------------cchHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhccc
Q 017414 137 KN-------------KS------------VITWTTMIAGLALHGLGREALDMFSRMERA-R-VKPNEITFIAILSACCHV 189 (372)
Q Consensus 137 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 189 (372)
.+ |+ ..+|...+....+.|..+.|.++|.+..+. + ..+......+.+...+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-S 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-C
Confidence 64 21 236788888888899999999999999876 2 2222333333333222 3
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC----CHHHHHHHHHHHHHcCChhHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 56999999999999753 446667778888888899999999999997 3334 3467888888889999999999
Q ss_pred HHHHHHHHhCCCCc
Q 017414 265 CALQHLIKLEPHNS 278 (372)
Q Consensus 265 ~~~~~~~~~~p~~~ 278 (372)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-09 Score=97.36 Aligned_cols=147 Identities=8% Similarity=-0.129 Sum_probs=111.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+. +..+|..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 456788899999999999999999999987653 4568899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHhhC
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---GYLQEAEKLLRRM 238 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~ 238 (372)
++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998874 345778888999999999999999999999853 244678888999999999 9999999999887
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-08 Score=80.70 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCcchHHHHHHHH----Hhc---CC
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGL----ALH---GL 156 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 156 (372)
...++|....+.++..+ |-+..+|+.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34578999999999876 556788888888898988 99999999998875 3456777665555 555 78
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH--HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC------H
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVE--LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY------L 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 228 (372)
+++++++++++.+.. +-+..+++.-.-.+.+.|.++ ++.++++++.+. -+-+...|+.-...+...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999875 346777776666667778887 999999999964 24577788777777777776 8
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHhC---CCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 229 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHLIKLE---PHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+++++.++++ ...| |...|+.+...+...|+. +.+..++.++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999998877 3344 788898888888888875 44666777777665 7788899999999999999999999999
Q ss_pred HHHh
Q 017414 303 VMRD 306 (372)
Q Consensus 303 ~m~~ 306 (372)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=80.75 Aligned_cols=169 Identities=8% Similarity=-0.034 Sum_probs=105.7
Q ss_pred HHHHHhccCC-CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 017414 28 ARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----AVELGEWIHNYIE 102 (372)
Q Consensus 28 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 102 (372)
|.+.|++..+ .++.++..|...|...+++++|++.|++..+.| +...+..+...+.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 456667777777777777777777777776654 44555566666665 5 6777777777776
Q ss_pred HcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcccCC-----cchHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKNKS-----VITWTTMIAGLAL----HGLGREALDMFSRMER 169 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 169 (372)
+.| +...+..|...|.. .+++++|..+|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 644 34455566666665 667777777777666543 3566677777766 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHhccc-C-----chHHHHHHHHHhHHh
Q 017414 170 ARVKPNEITFIAILSACCHV-G-----LVELGRRYFNIMKSR 205 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 205 (372)
.+ .+...+..|...|... | +.++|..+|+...+.
T Consensus 158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 51 2223444455555432 2 677777777777643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=90.94 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=147.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
..|++++|.+++++..+.. +.. .+...++++.|...|++. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 3567788888888777642 111 011157899999888764 5678899999999999998
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhc---CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 167 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 167 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
..+. +-.+ ...+|..+...|...|++++|...|++..+-+ +-.. ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 1111 13578888889999999999999999877432 1111 13577888889988 999999999988
Q ss_pred C-CCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc------chHHHHHHHHHHcCCchhHHHHHHH
Q 017414 238 M-PFEA-------NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 238 ~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. .+.| ...++..+...+...|++++|+..++++.++.|.+. ..+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 145788888999999999999999999998665432 3667778888889999999999998
Q ss_pred HH
Q 017414 304 MR 305 (372)
Q Consensus 304 m~ 305 (372)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=80.29 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|.++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3466777888888999999999999887 4445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhCC
Q 017414 289 AILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~g 308 (372)
...|++++|...|++.....
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998886643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-08 Score=83.30 Aligned_cols=163 Identities=9% Similarity=-0.023 Sum_probs=114.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCchHHHHHHHHHhHHhcC--CCcC--HH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE-----ITFIAILSACCHVGLVELGRRYFNIMKSRYG--IEPK--IE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 213 (372)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888777665322111 2233455666778889999988888774211 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-------CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------Cc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-------PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NS 278 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 278 (372)
+++.+...|...|++++|...|++. +..+ ...++..+...|...|++++|...++++.++.+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888889999999988888775 2111 1257788888999999999999999998875421 14
Q ss_pred chHHHHHHHHHHcCCchhH-HHHHHHHH
Q 017414 279 GNYAILSNIYAILGRWNES-GKIRKVMR 305 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 305 (372)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77677653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-07 Score=79.55 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=116.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMERARV-KPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGC 217 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 217 (372)
.+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888888888888888776421 2221 13334666777888999999999988852111222 336888
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-----CC--C-C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-----PF--E-A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYA 282 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-----~~--~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~ 282 (372)
+..+|...|++++|...|+++ .. . + ...++..+...|...|++++|...++++.++.+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999998888876 11 1 1 1236778888999999999999999999885422 256889
Q ss_pred HHHHHHHHcCC-chhHHHHHHHHH
Q 017414 283 ILSNIYAILGR-WNESGKIRKVMR 305 (372)
Q Consensus 283 ~l~~~~~~~g~-~~~a~~~~~~m~ 305 (372)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-09 Score=74.69 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+......|.+.|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666777777777777777777642 2345667777777777777777777777776 3333 566677777777
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
...|++++|...|+++++++|.++.++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 788888888888888888888777766666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-08 Score=79.23 Aligned_cols=123 Identities=12% Similarity=-0.009 Sum_probs=79.7
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY 257 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~ 257 (372)
..+...+...|++++|...|+++. .|+...+..+..+|...|++++|...|++. ... .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556666666666666553 345566666666666666666666666665 222 2455666666677777
Q ss_pred CChhHHHHHHHHHHHhCCCCc----------------chHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 258 GDVELGECALQHLIKLEPHNS----------------GNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|++++|...++++.+..|.+. .++..++.++...|++++|.+.+++....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777666555 67777777777777777777777776544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=74.46 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=65.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
++|.....+......|.+.|++++|+..|++..+ .+...|..+..++.+.|++++|+..|++.++.. +.+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 4445555666666666666666666666666543 245566666666666666666666666666542 234555666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 115 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (372)
+..++...|++++|...|++..+.. |.+...+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~ 120 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREG 120 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 6666666666666666666666653 333444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=75.86 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556667777788888888888887753 2345677788888888888888888888876 3233 567788888899
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH--HHHcCCchhHHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKVMR 305 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 305 (372)
...|++++|...++++.+..|.++..+..+..+ +...|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999888777554444 788899999999888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.6e-09 Score=77.63 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456677788888888888888888877 3334 6777888888888889999999999998888888888888888889
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.|++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999998888877543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-08 Score=78.94 Aligned_cols=192 Identities=11% Similarity=-0.079 Sum_probs=120.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHhcccC---------C----------
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNAL-------IDMYAKSGKIGKALQVFENMKNK---------S---------- 140 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~---------~---------- 140 (372)
..++...|.+.|.++.+.. |-....|..+ ...+.+.++..+++..+.+-..- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666666776666654 3345556555 34444444445554444443321 1
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC--HH
Q 017414 141 -----VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IE 213 (372)
Q Consensus 141 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 213 (372)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0123445666777888888888887776543 44434445555777888888888888755521 1 121 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC--C-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM--P-FEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~--~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
.+..+..++...|++++|+..|++. + ..|. .........++...|+.++|...|+++...+|. +.++..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5667778888888888888888877 2 1143 335666667788888888888888888888886 5544444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-08 Score=71.32 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455666777777888888888888888753 2345677778888888888888888888876 2233 56778888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888999999998888763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-09 Score=87.21 Aligned_cols=95 Identities=8% Similarity=-0.108 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++.+.+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555432 2244445555555555555555555555555442 33444555555555
Q ss_pred HhcCCHHHHHHHHHhcc
Q 017414 121 AKSGKIGKALQVFENMK 137 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~ 137 (372)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=79.82 Aligned_cols=162 Identities=9% Similarity=-0.083 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC---c------chHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--H
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKS---V------ITWTTMIAGLALHGLGREALDMFSRMERARV---KPN--E 176 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 176 (372)
..+...+..+...|++++|.+.+++..+.. . ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344556777888888888888887654311 1 2234456667788899999999988875321 122 4
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHH---hcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-------C
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKS---RYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-------N 243 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-------~ 243 (372)
.+++.+...|...|++++|...++++.+ ..+..+ ...++..+...|...|++++|...+++. .+.+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888889999999999999988873 211111 1257888888999999999999988876 1111 1
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 017414 244 AAIWGSLLAASNIYGDVELG-ECALQHLIK 272 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 272 (372)
..+|..+...+...|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888899999999999 777888776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-08 Score=83.41 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=138.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChh---hHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCCHH----H
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEI----A 77 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~ 77 (372)
.|+..+...+...+.-.- ..+|..-...+.. .+...+..+...|++++|...+++..+.. ..|+.. .
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~ 117 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW 117 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 477777777766665332 2344443333333 33344677889999999999999988742 123321 3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC-c----hhHHHHHHHHHHhcCCHHHHHHHHHhccc------CC----cc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNT-I----VPLNNALIDMYAKSGKIGKALQVFENMKN------KS----VI 142 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~ 142 (372)
+..+...+...+++++|...++.+.+..... + ..+++.+..+|...|++++|...|++..+ .+ ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 3356777778889999999999998743222 2 23688899999999999999999988762 11 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcccCc-hHHHHHHHHHhHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERA----RVKPN-EITFIAILSACCHVGL-VELGRRYFNIMKS 204 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 204 (372)
+|..+...|.+.|++++|+..+++..+. +..+. ..++..+..++.+.|+ +++|...++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7888999999999999999999987753 22222 5678888889999994 6999998888764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-08 Score=71.56 Aligned_cols=117 Identities=10% Similarity=-0.057 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 252 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 252 (372)
+...+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666677777777777777777777773 22335667777777777888888888877776 2223 5667778888
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999888888888888888888877653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-08 Score=69.74 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666777777788888888888887753 2345667777788888888888888888776 22 2356777888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888888888777776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-08 Score=69.26 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
..+|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 55666666677777777777777766543 244566666666666777777777776666542 33555666666666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
...|++++|...++.+.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66666666666666666553 334444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-08 Score=78.45 Aligned_cols=148 Identities=14% Similarity=-0.008 Sum_probs=77.6
Q ss_pred HhcCCHHHHHH---HHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCh
Q 017414 20 AKVGDLNNARA---LFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAV 91 (372)
Q Consensus 20 ~~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 91 (372)
...|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777777 443322234456777777777777777777777766551 1111 233455566666667777
Q ss_pred HHHHHHHHHHHHc----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCc----chHHHHHHHHHhcCC
Q 017414 92 ELGEWIHNYIEQY----GLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSV----ITWTTMIAGLALHGL 156 (372)
Q Consensus 92 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~ 156 (372)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665543 1011 123345555666666666666666554431 111 123444444555555
Q ss_pred hhHHHHHHHHH
Q 017414 157 GREALDMFSRM 167 (372)
Q Consensus 157 ~~~a~~~~~~~ 167 (372)
+++|.+.+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.5e-08 Score=70.23 Aligned_cols=98 Identities=9% Similarity=-0.068 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.+...|..+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 33444455555555555555555555554433 133444555555555555555555555554432 22344444444
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 017414 83 SACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
.++...|++++|...+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-06 Score=76.61 Aligned_cols=322 Identities=9% Similarity=-0.043 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCC-ccHHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQ-PNEAITLFRRMQVE-NV-KPDEIAMLAALSA 84 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~ 84 (372)
.+|...+..+-. |+++.|..+|++... |+...|..-+....+.+. .+....+|+..+.. |. .++...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 356666666654 889999999988776 788888877776666553 45567777777653 43 2366777777765
Q ss_pred HHc----cCChHHHHHHHHHHHHcCCCCchhHHHHH--------------------------------------------
Q 017414 85 CAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNAL-------------------------------------------- 116 (372)
Q Consensus 85 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------------------------------- 116 (372)
+.. .++.+.+..+|++++......-..+|...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 542 35677788888888763211111222111
Q ss_pred ----HHHHHhc--CC-----HHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 117 ----IDMYAKS--GK-----IGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 117 ----~~~~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
+..-... |- .+.+..+|++... .....|...+.-+.+.|+.++|..+|++.... +.+...+...
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y 252 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 1110000 00 1223344444432 23345555555666677777777777777665 2222222111
Q ss_pred HHHhcccCchHHHHHHHHHhHHhc---C-----C---CcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CHHHHHH
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRY---G-----I---EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA--NAAIWGS 249 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~---~-----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 249 (372)
.. +.+.+ + +++.+.+.+ . . ......|...+....+.+..+.|..+|++. ..| +..+|..
T Consensus 253 ~~-~~e~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~ 324 (493)
T 2uy1_A 253 GL-VMDEE---A---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIY 324 (493)
T ss_dssp HH-HTTCT---H---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHH
T ss_pred Hh-hcchh---H---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHH
Confidence 11 11111 1 122222110 0 0 001234555666666778899999999888 222 3444543
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEE
Q 017414 250 LLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFV 328 (372)
Q Consensus 250 l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~ 328 (372)
....-... ++.+.|..+|+.+.+..|.++..+...+......|+.+.|..+|+.... ...-+..|+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~---------- 391 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMI---------- 391 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHH----------
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHH----------
Confidence 33333333 3699999999999998887777777778888888999999999887621 000111111
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHcC
Q 017414 329 AGDTSHPDFDRLYQILCKINGQMKFAE 355 (372)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~m~~~g 355 (372)
.-...+|+.+.+..++++..+.++..+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 112345677777777777777776444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=76.46 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=82.1
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH-HHHcCCh--h
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA-SNIYGDV--E 261 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~--~ 261 (372)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777777643 2345667777777777778888887777776 2223 55566666666 6677777 8
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+|...++++.+..|.++.++..++.++...|++++|...+++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888877777888888888888888888888777554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-06 Score=70.20 Aligned_cols=232 Identities=11% Similarity=-0.019 Sum_probs=158.8
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS-G- 124 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 124 (372)
....+.+..++|++++.+++... +-+..+|+.--.++...+ +++++...++.+.... +.+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33344556678999999998854 335566777777777778 5999999999999875 66778888777777776 7
Q ss_pred CHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc--
Q 017414 125 KIGKALQVFENMKNKS---VITWTTMIAGLALHGLGR--------EALDMFSRMERARVKPNEITFIAILSACCHVGL-- 191 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 191 (372)
++++++++++++.+.+ ..+|+.-..++.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 8899999999888654 456666666666666666 89999999988753 367777777767766665
Q ss_pred -----hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhC-CC-----
Q 017414 192 -----VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL--------------------QEAEKLLRRM-PF----- 240 (372)
Q Consensus 192 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~-~~----- 240 (372)
++++.+.++++... .+-|...|+-+-..+.+.|+. .....+..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887753 345667777766666665543 3344444444 21
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HhCCCCcchHHHH
Q 017414 241 --EANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAIL 284 (372)
Q Consensus 241 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l 284 (372)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|...
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2466667777777777777778888887776 3566554444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.2e-09 Score=86.87 Aligned_cols=50 Identities=10% Similarity=-0.113 Sum_probs=32.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc-CCchhHHHHHHHHHh
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRD 306 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 306 (372)
.|+.++|.+.++.+.+.+|.+......+...+.+. +.+++|.++|.+...
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46777777777777777776655555555555554 566777777776643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=84.77 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...|++++++.|.++.++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999887 3344 67788999999999999999999999999999999999999999999
Q ss_pred HcCCchhHH-HHHHHHH
Q 017414 290 ILGRWNESG-KIRKVMR 305 (372)
Q Consensus 290 ~~g~~~~a~-~~~~~m~ 305 (372)
..|++++|. ..++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999994 4666663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-08 Score=70.72 Aligned_cols=117 Identities=13% Similarity=-0.034 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
.+...+..+...+...|++++|...|++..+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555555666666666666666655442 234455555555556666666666665555532 223445555555
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
++...|++++|...++...+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555566666665555555543 2334444445555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=74.78 Aligned_cols=122 Identities=9% Similarity=-0.029 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCC-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.++..+.+++...+.+.+++.+ .| +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 3456666666655554444322 12 44577888888889999999999999888853 34677888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
|++++|...|+++.+.. |.++..|..+..+|...|++++|...|++..+
T Consensus 84 g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp TCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988875 55677888889999999999999999988764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.6e-09 Score=82.18 Aligned_cols=170 Identities=11% Similarity=-0.043 Sum_probs=100.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
+......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 33444455566665555533221 23455566666667777777777777666532 110000000
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
....-.. ......+..+..+|...|++++|...+++. ...| +...+..+..++...|++++|...++++.
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356777888888999999999988887 3333 67788888999999999999999999999
Q ss_pred HhCCCCcchHHHHHHHHHHcCCchhHH-HHHHHHHhC
Q 017414 272 KLEPHNSGNYAILSNIYAILGRWNESG-KIRKVMRDM 307 (372)
Q Consensus 272 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 307 (372)
++.|.++.++..+..++...++.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988888887 466655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=71.95 Aligned_cols=125 Identities=10% Similarity=-0.035 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555555555555555555555432 2244455555555555555666555555555543 334455555555556
Q ss_pred hcCCHHHHHHHHHhccc---CCcchHH--HHHHHHHhcCChhHHHHHHHHHH
Q 017414 122 KSGKIGKALQVFENMKN---KSVITWT--TMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
..|++++|...|++..+ .+...+. ..+..+...|++++|++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666555442 1222332 22223455566666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-08 Score=71.78 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888877 3334 66777788888888888888888888888888888888888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|.+.|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-07 Score=71.89 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=12.0
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+..+...+...|++++|...+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=77.01 Aligned_cols=129 Identities=10% Similarity=-0.019 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCH 188 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 188 (372)
...+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34445555556666666666655543 211234444445556666666666665333221 110 1234445555666
Q ss_pred cCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
.|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++ ...|+
T Consensus 184 LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666665521 11132 234444555555666666666666655 33344
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=68.89 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667777777777777777776 2233 56677777777888888888888888888888877778888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|...+++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888887776543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-08 Score=74.53 Aligned_cols=104 Identities=9% Similarity=-0.090 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777788888888888888888753 2446777888888888889999999888887 3334 55677888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+...|++++|...|+++.++.|.++...
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 8999999999999999999888776543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-06 Score=69.50 Aligned_cols=241 Identities=9% Similarity=-0.007 Sum_probs=157.6
Q ss_pred hhHHHHHHH---HHhCCCcc-HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcC
Q 017414 41 ISWTTLIAG---YAQMDQPN-EAITLFRRMQVENVKP-DEIAMLAALSACAQLGA----------VELGEWIHNYIEQYG 105 (372)
Q Consensus 41 ~~~~~l~~~---~~~~~~~~-~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 105 (372)
..|..+... ..+.|.++ +|+.++..+... .| +..+|+.--.++...+. ++++..+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 345444433 34566666 789999999875 45 34455544333333332 577888888888775
Q ss_pred CCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 017414 106 LNTIVPLNNALIDMYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
+.+..+|+.-..++...| .+++++.+++++.+ .|..+|+.-..++...|. ++++++.++++.+..+ -|...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 667888888777888877 48899999998875 355677777777788888 5899999999988753 355666
Q ss_pred HHHHHHhccc--------------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 017414 180 IAILSACCHV--------------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA-----------GYLQEAEKL 234 (372)
Q Consensus 180 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~ 234 (372)
+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 6544443333 4577888888888753 244666676554444444 346777777
Q ss_pred HhhC-CCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PFEANAAIWGSLLAA-----SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
++++ ...||. .|..+..+ ....+..+++...+.++.+++|....-|..+...+
T Consensus 261 ~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 261 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7776 445543 23322221 12346667788888888888887777776665544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=81.70 Aligned_cols=145 Identities=9% Similarity=-0.045 Sum_probs=95.0
Q ss_pred CCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHH
Q 017414 23 GDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--------------EIAMLAALSAC 85 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 85 (372)
+++++|...|+...+ | +...|..+...+.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 2 345667777777777777777777777766431111 36677777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHH-H
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREA-L 161 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a-~ 161 (372)
.+.|++++|...++++++.. +.+...+..+..+|...|++++|...|++..+ .+..++..+..++.+.|++++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777764 44666777777777777777777777776653 2445677777777777777777 3
Q ss_pred HHHHHHH
Q 017414 162 DMFSRME 168 (372)
Q Consensus 162 ~~~~~~~ 168 (372)
..|+.|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-07 Score=67.45 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.+.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888887776 2233 566777777788888888888888888888888888888888888
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
+...|++++|...+++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888877543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=66.45 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC--CcchHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSNI 287 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 287 (372)
...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|. +..++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777777788888888877776 222 35667777777888888888888888888888887 77888888888
Q ss_pred HHHc-CCchhHHHHHHHHHhCC
Q 017414 288 YAIL-GRWNESGKIRKVMRDMG 308 (372)
Q Consensus 288 ~~~~-g~~~~a~~~~~~m~~~g 308 (372)
+... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-06 Score=71.77 Aligned_cols=225 Identities=11% Similarity=0.026 Sum_probs=161.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcccC---CcchHHHHHHHHHhc-C-Chh
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKALQVFENMKNK---SVITWTTMIAGLALH-G-LGR 158 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~ 158 (372)
..+.+..++|..+++.++..+ +.+..+|+.-..++...| .+++++.+++.+... +..+|+.-...+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 344455678999999999886 567788888888888888 599999999998764 446777777777776 7 899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH--------HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVE--------LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY--- 227 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 227 (372)
+++++++++.+.. +-+..+++.-.-.+.+.|.++ ++.+.++++.+. -+-+...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 9999999999875 336667765555555555555 899999999864 24577888888888888776
Q ss_pred ----HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHhC------C
Q 017414 228 ----LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV--------------------ELGECALQHLIKLE------P 275 (372)
Q Consensus 228 ----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p 275 (372)
++++++.+++. ...| |...|+.+-..+...|+. .....+...+.... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68888888776 3344 777788777777776654 22233333332222 3
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 017414 276 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 314 (372)
.++.+...|+..|...|+.++|.++++.+.+ ...|...
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~ 337 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA 337 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH
Confidence 4666788999999999999999999999853 3444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=70.60 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455555666666666666666665542 2345555566666666666666666666666654 344555555666666
Q ss_pred hcCCHHHHHHHHHhcc
Q 017414 122 KSGKIGKALQVFENMK 137 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~ 137 (372)
..|++++|...|++..
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-07 Score=64.39 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555666666666666666532 1234555566666666666666666666655 2222 455566666666
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 667777777777777777666666555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-07 Score=71.63 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=94.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HHhcCCH--
Q 017414 152 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYL-- 228 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 228 (372)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877763 345677788888888888999999888888753 13456677777777 7788887
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 229 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888887 3334 567778888888999999999999999999888776433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=70.56 Aligned_cols=109 Identities=10% Similarity=-0.045 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 252 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 252 (372)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456677777888888888888888888753 2336677788888888888888888888876 3334 5667777888
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
++...|++++|...++++.++.|.++..+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888887776554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=67.24 Aligned_cols=94 Identities=17% Similarity=-0.016 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999887 3344 6778888888999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 017414 292 GRWNESGKIRKVMRDM 307 (372)
Q Consensus 292 g~~~~a~~~~~~m~~~ 307 (372)
|++++|...+++....
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=65.87 Aligned_cols=110 Identities=7% Similarity=-0.123 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777642 2335667777777777778888887777776 3334 466777777788
Q ss_pred HHcCChhHHHHHHHHHHHhC------CCCcchHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLE------PHNSGNYAILSNIY 288 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 288 (372)
...|++++|...++++.++. |.++.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888877 66665555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.7e-07 Score=65.81 Aligned_cols=111 Identities=13% Similarity=-0.009 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 248 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~ 248 (372)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666677777777777777777763 3444 466666777777777777777777766 2233 556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
.+..++...|++++|...++++.+..|.++.++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777778888888888888888888887766665554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-07 Score=66.47 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=89.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
.+...+..+...+...|++++|...|++. ...|+ ...+..+..++...|++++|...++++.+..|.++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888999999999999999999998 66776 67788888999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhHHHHHHHHHhC
Q 017414 285 SNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 285 ~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+.++...|++++|...+++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=68.54 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+|...|++++|...|+++.+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456667777777777777777777777653 235566667777777777777777777777743 2334666777777
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 017414 221 LLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~ 238 (372)
+|...|++++|...|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777766
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-08 Score=76.07 Aligned_cols=146 Identities=8% Similarity=-0.023 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CC--------------
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-PD-------------- 74 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~-------------- 74 (372)
+..+......|+++++.+.|+.-.+ .....+..+...+...|++++|+..|++..+.... |+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3444555666777777777765433 23456777888888888888888888888774211 10
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHH
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGL 151 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 151 (372)
...+..+..++...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|++..+ .+..++..+..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1455555555666666666666666655543 33444555555555555555555555554432 1233444444444
Q ss_pred HhcCChhH
Q 017414 152 ALHGLGRE 159 (372)
Q Consensus 152 ~~~~~~~~ 159 (372)
...++.++
T Consensus 167 ~~~~~~~~ 174 (198)
T 2fbn_A 167 NKLKEARK 174 (198)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44443333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-07 Score=63.76 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999988 3334 6778888999999999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.+++....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=67.26 Aligned_cols=94 Identities=4% Similarity=-0.095 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc-------chHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-------GNYAI 283 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 283 (372)
..+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999887 4344 567788888899999999999999999998877554 36777
Q ss_pred HHHHHHHcCCchhHHHHHHHHHh
Q 017414 284 LSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888999999999999987654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=78.03 Aligned_cols=162 Identities=4% Similarity=-0.212 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhc---CCCc-CHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERAR-VKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 214 (372)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+.+.|..++....... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 11111 223334445556778888888777665321 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---CCC----cc
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-----P--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE---PHN----SG 279 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 279 (372)
+..+...|...|++++|..+++++ + .++ ...++..++..|...|++++|..+++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888888766 1 112 24467777788888889888888888887633 222 13
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+..++..+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777778888888888776653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=64.02 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=51.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--CHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP--DEIAMLA 80 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ 80 (372)
+.+..++..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +. +...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 34445555555555555555555555555442 234455555555555555555555555555532 22 3445555
Q ss_pred HHHHHHcc-CChHHHHHHHHHHHHc
Q 017414 81 ALSACAQL-GAVELGEWIHNYIEQY 104 (372)
Q Consensus 81 l~~~~~~~-~~~~~a~~~~~~~~~~ 104 (372)
+..++... |++++|.+.++...+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 55555555 5555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-05 Score=70.05 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=139.5
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--CC------------------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCC
Q 017414 16 VAGYAKVGDLNNARALFELMTE--KN------------------VISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPD 74 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~--~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~ 74 (372)
...+.+.|++++|++.|..+.+ ++ ..++..++..|...|++++|.+.+.++.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988753 11 1247889999999999999999999886531 1122
Q ss_pred H----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccc----C--
Q 017414 75 E----IAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN----K-- 139 (372)
Q Consensus 75 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-- 139 (372)
. .+.+.+-..+...|+.+.+..++...... +..+ -..++..|+..|...|++++|..++++... .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333344455678999999998877642 2222 246778899999999999999999987642 1
Q ss_pred ---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 140 ---SVITWTTMIAGLALHGLGREALDMFSRMERA--RV-KP-N--EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
...++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1357888999999999999999999987642 11 22 1 34566777888999999999988887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=63.32 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
|..+..++...|++++|++.|++.+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555666666666666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-07 Score=64.93 Aligned_cols=101 Identities=10% Similarity=-0.097 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 017414 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 251 (372)
Q Consensus 174 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~ 251 (372)
.+...+..+...+...|++++|...|+.+... .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566777777777788888888888777743 2335677777778888888888888887776 2233 566777788
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 252 AASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=78.84 Aligned_cols=128 Identities=11% Similarity=0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-------------CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-------------KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA- 242 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~- 242 (372)
.+..+...+.+.|++++|...|+++.+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555555566666666666666553211111 1577888999999999999999999987 3334
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH-HHHHHH
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK-IRKVMR 305 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 305 (372)
+...|..+..++...|++++|...|+++++++|.+..++..+..++.+.|+++++.+ .++.|.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999998875 566654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-07 Score=81.60 Aligned_cols=118 Identities=9% Similarity=-0.000 Sum_probs=92.0
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+.+.|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566778888888888888853 2335778888888888999999999888887 4444 567788888899999999
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHH--HHHcCCchhHHHHHH
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRK 302 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 302 (372)
++|...++++.+..|.++..+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999888888888777 888899999998887
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.5e-05 Score=64.52 Aligned_cols=218 Identities=14% Similarity=0.032 Sum_probs=155.3
Q ss_pred HccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CCcchHHHHHHHH
Q 017414 86 AQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK----------IGKALQVFENMKN---KSVITWTTMIAGL 151 (372)
Q Consensus 86 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~ 151 (372)
.+.|.+ ++|..+.+.+...+ |.+..+|+.--.++...|. +++++.+++.+.. .+..+|+.-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555 48999999999875 4456667655555544443 6788888888764 4567888888888
Q ss_pred HhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc---
Q 017414 152 ALHGL--GREALDMFSRMERARVKPNEITFIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--- 225 (372)
Q Consensus 152 ~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 225 (372)
.+.++ +++++.+++++.+.. +-+...|+.-.-++...|. ++++.+.++.+.+. -+.|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999875 3466777766666667777 58999999999964 255777777766665554
Q ss_pred -----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHhCCCCcchH
Q 017414 226 -----------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY-----------GDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 226 -----------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+.++++++.+.+. ...| |...|+.+-..+... +.++++++.++++.+..|++..++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3344 667777665555544 357899999999999999886555
Q ss_pred HHHHHHH---HHcCCchhHHHHHHHHHhC
Q 017414 282 AILSNIY---AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 282 ~~l~~~~---~~~g~~~~a~~~~~~m~~~ 307 (372)
..++... ...|..+++...+.++...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4444322 2357777888888888653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.2e-07 Score=64.94 Aligned_cols=109 Identities=4% Similarity=-0.086 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWG 248 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~----~~~----~~~~~ 248 (372)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...+++. .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555666666666666665532 1334455556666666666666666666655 11 112 45566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
.+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666777777777777777777777766 4555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-07 Score=64.26 Aligned_cols=94 Identities=14% Similarity=0.013 Sum_probs=42.0
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHH
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAAS 254 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 254 (372)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 334444555555555555554321 1111 23444444455555555555555444 11121 23344444444
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCc
Q 017414 255 NIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
...|++++|...++++.+..|+++
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCh
Confidence 455555555555555555444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=9e-07 Score=65.89 Aligned_cols=91 Identities=15% Similarity=-0.015 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------C
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN-------------AAIWGSLLAASNIYGDVELGECALQHLIKL-------E 274 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 274 (372)
......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445555666666666666554 22222 237888888888999999999999999988 9
Q ss_pred CCCcchH----HHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 275 PHNSGNY----AILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 275 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|++...| ...+.++...|++++|+..|++...
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9888888 9999999999999999999988754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-05 Score=70.06 Aligned_cols=289 Identities=10% Similarity=-0.036 Sum_probs=151.5
Q ss_pred cCCccHHHHHHHHHHHH----hcCCHHHHHHHHhccCC-CCh---hhHHHHHHHHH-------------hCCCccHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYA----KVGDLNNARALFELMTE-KNV---ISWTTLIAGYA-------------QMDQPNEAITL 62 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~~~~~~A~~~ 62 (372)
.++.+..+|...+..+. .+++++.+..+|++... |.. ..|......-. ..+.+..|..+
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~ 159 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR 159 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence 35667788888887765 35678889999988765 311 11211111000 00122233333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 63 FRRMQVENVKPDEIAMLAALSACAQL--GA-----VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 63 ~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
++.+...-...+...|...+.--... +- .+.+..+|++++... +.+..+|...+..+.+.|+.++|..+|++
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333210001223444443332221 11 234667777777653 55677777777777788888888888876
Q ss_pred cccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCC---CHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 136 MKNKSVITWTTMIAGLALHGLGREALDMFSRMERA---------RVKP---NEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
.... +.....- ..|......++. ++.+.+. +..+ ....|...+....+.+..+.|..+|+.+
T Consensus 239 Ai~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 239 GIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp HHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 5433 2211111 122222122222 2222211 0001 1234555555555666788888888877
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
... ..+...|...+..-...+ +.+.|..+|+.. ...-+...|...+......|+.+.|..+|+++ +.....
T Consensus 313 ~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~l 386 (493)
T 2uy1_A 313 GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRM 386 (493)
T ss_dssp TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHH
T ss_pred hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHH
Confidence 221 123444433232222223 577888888776 21123444566666667778888888887776 234456
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|...+..-...|+.+.+..++++..
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666667788888877777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=61.22 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC---HHHHHHH
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNE---ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCM 218 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 218 (372)
..+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 33445555566666666666665554211 11 244445555556666666666666655421 112 3445555
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~ 238 (372)
..++...|++++|...|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666666666666666555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-06 Score=76.12 Aligned_cols=118 Identities=9% Similarity=-0.016 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCch
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 192 (372)
+...+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 44556677777888777776653 245677777777777777777777777777763 23456667777777777777
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHh
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDL--LGRAGYLQEAEKLLR 236 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 236 (372)
++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777431 2223344444444 666777777777776
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=64.45 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...|++...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666666666666666666666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=62.21 Aligned_cols=93 Identities=13% Similarity=-0.050 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444455555666666666666555532 2244555555555555666666666665555543 3344455555555555
Q ss_pred cCCHHHHHHHHHhcc
Q 017414 123 SGKIGKALQVFENMK 137 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~ 137 (372)
.|++++|...|++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=62.75 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-------cchHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYA 282 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 282 (372)
...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999987 22 3467788889999999999999999999999987765 77899
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.++.++...|++++|.+.+++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-06 Score=73.90 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++.++.|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888999999999999999999988 5555 6778888999999999999999999999999999999999999999
Q ss_pred HHcCCchhHHH
Q 017414 289 AILGRWNESGK 299 (372)
Q Consensus 289 ~~~g~~~~a~~ 299 (372)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=66.60 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc-chHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-GNYAILSNI 287 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 287 (372)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++.+++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888888999999999999999887 3344 677888899999999999999999999999999877 444444444
Q ss_pred HH
Q 017414 288 YA 289 (372)
Q Consensus 288 ~~ 289 (372)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=63.24 Aligned_cols=128 Identities=12% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAI 246 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~----~~~ 246 (372)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444421100011 124445555556666666666655554 10111 334
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCC------CCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEP------HNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+..+...+...|++++|...++++.+..+ ....++..++..+...|++++|.+.+++...
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566667777777777777777765321 1234567777788888888888887776643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-07 Score=64.71 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred cCchHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 017414 189 VGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
.|++++|...|+++.+. + -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666631 1 1223355555666666666666666666655 2223 3445555555666666666666
Q ss_pred HHHHHHHHhCCCCcc
Q 017414 265 CALQHLIKLEPHNSG 279 (372)
Q Consensus 265 ~~~~~~~~~~p~~~~ 279 (372)
..++++.+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 666666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=76.63 Aligned_cols=145 Identities=9% Similarity=-0.052 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---------------HHHHHHHHH
Q 017414 22 VGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---------------EIAMLAALS 83 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~~l~~ 83 (372)
.+++++|...|+...+ .....|..+...+.+.|++++|+..|++.++.. +.+ ...|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443 234567777777888888888888888777642 112 467777888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 160 (372)
++.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+. +..++..+..++.+.++++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888765 456777777888888888888888888877642 456777788888888887776
Q ss_pred HH-HHHHHH
Q 017414 161 LD-MFSRME 168 (372)
Q Consensus 161 ~~-~~~~~~ 168 (372)
.+ .+..|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=62.30 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=35.5
Q ss_pred CChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 155 GLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
|++++|+..|++..+.+. +.+...+..+..+|...|++++|...|+++.+. .+-+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 444555555555444320 112233444444445555555555555555432 1223444444455555555555555
Q ss_pred HHHhhC
Q 017414 233 KLLRRM 238 (372)
Q Consensus 233 ~~~~~~ 238 (372)
..+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-07 Score=76.43 Aligned_cols=144 Identities=11% Similarity=-0.063 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4555555566666666666666666554 233221 12223333222111 1 12667788888
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH-HHHcCCchhHHH
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI-YAILGRWNESGK 299 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 299 (372)
.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.++.|.++.++..|..+ ....+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 3334 667788888888888888888888888888888888777777766 344566677777
Q ss_pred HHHHHHh
Q 017414 300 IRKVMRD 306 (372)
Q Consensus 300 ~~~~m~~ 306 (372)
.|+.|..
T Consensus 321 ~~~~~l~ 327 (338)
T 2if4_A 321 MYKGIFK 327 (338)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 7777643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=63.83 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=46.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCC-CHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEA-NAAI 246 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~-~~~~ 246 (372)
+..+...+...|++++|...+++..+...-..+ ...+..+...+...|++++|...+++. +..+ ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444555555555555444321100001 233444555555566666555555544 1001 1234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+..+...+...|++++|...++++.++
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555666666777777777777776653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=72.67 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
...+..+...+.+.|++++|...|++..+.+.... .+...++++++...+. ...+..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788899999999999999998764322211 1222333444433221 13667778888889
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCChhHHHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECA 266 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~ 266 (372)
|++++|...++++.+. .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988853 2446788888899999999999999999887 55564 3344444444 2344667788888
Q ss_pred HHHHHHhCCCCc
Q 017414 267 LQHLIKLEPHNS 278 (372)
Q Consensus 267 ~~~~~~~~p~~~ 278 (372)
++++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.2e-06 Score=73.02 Aligned_cols=124 Identities=14% Similarity=0.057 Sum_probs=99.6
Q ss_pred HhcccCchHHHHHHHHHhHHhcC--C---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-HHHH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYG--I---EP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWG 248 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~~~~ 248 (372)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988775321 1 12 2477899999999999999999988876 334543 4688
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----hCCCCcch---HHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 249 SLLAASNIYGDVELGECALQHLIK-----LEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.|...|..+|++++|+.+++++.+ ++|++|.+ ...|..++...|.+++|..+|..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987 67877654 4577788889999999999999998754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.3e-06 Score=70.93 Aligned_cols=117 Identities=8% Similarity=-0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE-------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 71 (372)
.|..+...+.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355566666666666666666665443 122345555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 129 (372)
+.+...|..+..++...|++++|...++++.+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555555555555555555555543 22344444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0001 Score=67.88 Aligned_cols=137 Identities=7% Similarity=-0.070 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC--chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEK 233 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 233 (372)
++++++.++++.+.. +-+..+|..-.-++.+.+ +++++.+.++++.+. -+-+...|+.-..++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 666677777666653 224555555555555666 557777777777753 2335566666666666666 6777777
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchh
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIY--------------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
.++++ ...| |...|+.....+... +.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 77776 4344 556666666655543 457899999999999999999999999999998887554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=64.12 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CC-------CCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PF-------EAN-AAIW----GSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777665 44 775 4567 888889999999999999999999999887765
Q ss_pred HHHH
Q 017414 281 YAIL 284 (372)
Q Consensus 281 ~~~l 284 (372)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-06 Score=57.97 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC------cchHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYA 282 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 282 (372)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.++.|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999988887 3334 67778888889999999999999999999999987 66778
Q ss_pred HHHHHHHHcCCchhHHHHHH
Q 017414 283 ILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~ 302 (372)
.++.++...|+++.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888887766554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=53.23 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888888876 2233 56678888888899999999999999999999988888888888876
Q ss_pred HcC
Q 017414 290 ILG 292 (372)
Q Consensus 290 ~~g 292 (372)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=54.35 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+...+..+..++...|++++|+..++++.+.+|.++.+|..++.+|...|++++|.+.+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888999999999999999999999999999999999999999999999999987754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=54.60 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=51.1
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...|++. ...| +...+..+...+...|++++|...++++.+..|.++.+|..++.+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 2233 4556666667777777777777777777777777777777777777777777777777776644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-06 Score=58.36 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc------hhHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI------VPLNN 114 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 114 (372)
..|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+.. +.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 445556666666666666666666665542 2345556666666666666666666666666543 112 33344
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 017414 115 ALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~ 135 (372)
.+..++...|+.+.|...|++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 444455555544444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.4e-05 Score=69.39 Aligned_cols=63 Identities=6% Similarity=-0.095 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMER-----ARV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
+++.|...|...|++++|+.++++.++ .|. .|+. .+...+..++...+.+++|+.+|..+++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444432 121 1222 23344445555666777777777776643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=51.25 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666543 3355666667777777777777777777777654 3445566667777777777777777766554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-05 Score=59.73 Aligned_cols=82 Identities=6% Similarity=0.050 Sum_probs=59.0
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-
Q 017414 226 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD----------VELGECALQHLIKLEPHNSGNYAILSNIYAILG- 292 (372)
Q Consensus 226 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 292 (372)
+.+++|...+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3445555555444 2222 44444444444444443 569999999999999999999999999999875
Q ss_pred ----------CchhHHHHHHHHHhC
Q 017414 293 ----------RWNESGKIRKVMRDM 307 (372)
Q Consensus 293 ----------~~~~a~~~~~~m~~~ 307 (372)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999988664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=49.01 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 241 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
..+...+..+..++...++ .++|..+++++++.+|.++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888887765555 69999999999999999999999999999999999999999999977544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=48.31 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2234444555555555555555555555555443 223344444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00038 Score=50.94 Aligned_cols=109 Identities=11% Similarity=-0.078 Sum_probs=51.2
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKAL 130 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 130 (372)
++++|++.|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 23322 3344444445555555555555543 23334444555544 44555555
Q ss_pred HHHHhccc-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 017414 131 QVFENMKN-KSVITWTTMIAGLAL----HGLGREALDMFSRMERAR 171 (372)
Q Consensus 131 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 171 (372)
++|++..+ .++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 233444444444444 444555555555444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0012 Score=60.61 Aligned_cols=174 Identities=9% Similarity=-0.053 Sum_probs=128.7
Q ss_pred hCCC-ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 52 QMDQ-PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA----------VELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 52 ~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+.|. .++|++.++++.... +-+...|+.--.++...++ ++++...++.+.+.. +.+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 457899999998853 2345567766666666666 889999999998876 66788888888888
Q ss_pred HhcC--CHHHHHHHHHhccc---CCcchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-----
Q 017414 121 AKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHG-LGREALDMFSRMERARVKPNEITFIAILSACCHV----- 189 (372)
Q Consensus 121 ~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 189 (372)
.+.| +++++++.++++.+ .+..+|+.-..++.+.| .++++++.++++.+..+ -+...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 8888 77999999998875 35568888888888888 88999999999887653 3566666555544432
Q ss_pred ---------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 190 ---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 190 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.++++.+.++.+... .+-+...|.-+...+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5678899999888853 24467888888888877776443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00046 Score=50.48 Aligned_cols=110 Identities=6% Similarity=-0.116 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 230 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 230 (372)
+++++|++.|++..+.| .|... +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 23332 445555555566666666666542 244445555555554 455555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHh
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKL 273 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 273 (372)
|...|++.-..-+...+..|...|.. .++.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554111334444444444444 44555555555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00049 Score=60.85 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCc---ch
Q 017414 219 IDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNS---GN 280 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 280 (372)
+..+.+.|++++|+.++++. +..| ...+++.+..+|...|++++|+.+++++++ ++|.+| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999998866 1122 235788899999999999999999999986 456655 46
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
++.|+..|..+|++++|..++++..+--. ..-...||...++...+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998754211 1112358888888888877777665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.1e-05 Score=56.83 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 257 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 257 (372)
+.+++|...++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 12244455545555544443 34666666665 3344 445566666666655
Q ss_pred -----------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 258 -----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 258 -----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|++++|++.|+++++++|.+. .|...+.. .++|-++.-.....+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccccc
Confidence 589999999999999999775 44333332 2555666555554433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00076 Score=49.49 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCChhHH
Q 017414 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 263 (372)
....+.+.|.+.... + +++..+...+..++++.+ +++++..++++. ... | ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344445555544432 2 245555555555555555 344555555554 112 3 223334444455556666666
Q ss_pred HHHHHHHHHhCCCCc
Q 017414 264 ECALQHLIKLEPHNS 278 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~ 278 (372)
.+.++.+++.+|.+.
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 666666666666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00059 Score=46.63 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
...+..+..++...|++++|...++.+.+.. +.+...|..+..+|...|++++|.+.|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444445555555555555544443 22334444455555555555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0005 Score=60.73 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=61.3
Q ss_pred ccCchHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-HHHHHHH
Q 017414 188 HVGLVELGRRYFNIMKSRY--GIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWGSLL 251 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~~~~~l~ 251 (372)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4567788887777765421 1111 2356777778888888888887777765 233433 3577777
Q ss_pred HHHHHcCChhHHHHHHHHHHH-----hCCCCcch
Q 017414 252 AASNIYGDVELGECALQHLIK-----LEPHNSGN 280 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 280 (372)
..|..+|++++|+.+++++.+ ++|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 778888888888888887766 55666533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00044 Score=61.13 Aligned_cols=83 Identities=13% Similarity=-0.056 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCc---chHHHHH
Q 017414 224 RAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNS---GNYAILS 285 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 285 (372)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889988888765 22343 35788999999999999999999999987 556665 4688999
Q ss_pred HHHHHcCCchhHHHHHHHHHh
Q 017414 286 NIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0015 Score=44.22 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
....+...|++++|...|++. ...| +.. .+..+..++...|++++|...++++.+.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677888888888888877 3334 556 777888888888999999999999999988887666
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0046 Score=52.67 Aligned_cols=69 Identities=13% Similarity=-0.044 Sum_probs=45.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.++.+|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445566666666666667777777777766 334666566556666667777777777777777777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0021 Score=56.87 Aligned_cols=101 Identities=12% Similarity=-0.087 Sum_probs=78.3
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-H
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRY--GIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-A 245 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~ 245 (372)
.+..+.+.|++++|..++++..+.. -+.| ...+++.+..+|...|++++|+.++++. +..|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999887431 1222 2467889999999999999999998876 334443 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCcchHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSGNYA 282 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 282 (372)
+++.|...|...|++++|+.+++++.+ ++|++|.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 688899999999999999999999987 6788775443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00077 Score=45.72 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=53.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSG-NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
....+...|++++|...++++.+..|.++. .+..++.+|...|++++|.+.|++....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455778899999999999999999999999 9999999999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.011 Score=57.05 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 017414 120 YAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344566666666655442 33456666666666666666666666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.025 Score=40.13 Aligned_cols=141 Identities=10% Similarity=0.037 Sum_probs=101.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.-.|..++..++..+..... +..-+|-+|.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 345677888888887776642 4445555555444555666666666666543222 24566666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
....+-.++ .+.......+..+...|+.+...+++..+....+.++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 455566777788889999999999999976667778889999999999999999999999999999986
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0049 Score=42.33 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-----P----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+...+..|...+...|++..|...|+.. + -.+....+..+..++.+.|+++.|...++++.++.|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4444556666677777777777666654 1 123456788888899999999999999999999999887665
Q ss_pred HHH
Q 017414 282 AIL 284 (372)
Q Consensus 282 ~~l 284 (372)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0063 Score=58.59 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=90.3
Q ss_pred HHHhcCCHHHHHH-HHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHH
Q 017414 119 MYAKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 197 (372)
Q Consensus 119 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 197 (372)
.....+++++|.+ ++..+. +......++..+.+.|.+++|+++.++ |. .- .......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHH
Confidence 3445677777766 543332 011225566666777777777765421 11 11 222345678888877
Q ss_pred HHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 198 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.+.+ .+...|..+.+.+.+.|+++.|.++|.+++. |..+...+...|+.+...++.+.+...+
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 65433 2566788888888888888888888888741 4445555555666666655555554432
Q ss_pred cchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 278 SGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-+.....+|.+.|++++|.+++.++
T Consensus 738 --~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 --KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred --chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2233344556666777777666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.007 Score=51.55 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
.+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444333333444444444444444432 343333334444444444444444444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.1 Score=39.31 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
.+...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 45567788888888887765 4567788888888888888888888887753 334555566677777766
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 6655555544 1 3444455566677777777775543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0087 Score=43.88 Aligned_cols=83 Identities=12% Similarity=-0.028 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC---chHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVG---LVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 231 (372)
...+.+.|.+..+.|. ++..+...+..++++++ +.+++..+++.+.+. . .| ....+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666555543 56666666666666666 566777777777754 2 23 345555666677788888888
Q ss_pred HHHHhhC-CCCC
Q 017414 232 EKLLRRM-PFEA 242 (372)
Q Consensus 232 ~~~~~~~-~~~~ 242 (372)
.+.++.+ .++|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 8877776 4455
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.015 Score=41.06 Aligned_cols=92 Identities=17% Similarity=0.059 Sum_probs=54.9
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCh
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE---AEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~ 260 (372)
.......+.+.|...... + .++..+-..+..++.+..+..+ ++.+++.+ ... | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455556666555432 3 3666666667777777666554 66677666 222 3 222333444577777777
Q ss_pred hHHHHHHHHHHHhCCCCcchH
Q 017414 261 ELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~ 281 (372)
++|.+.++.+++..|.+..+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0087 Score=48.95 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCC-cchHHHHHHHHHHc-CCchh
Q 017414 228 LQEAEKLLRRM-PFEAN---AAIWGSLLAASNI-----YGDVELGECALQHLIKLEPHN-SGNYAILSNIYAIL-GRWNE 296 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 296 (372)
...|...+++. .+.|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666666 55565 5577888888877 489999999999999999964 88888999988884 88999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 017414 297 SGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 297 a~~~~~~m~~~g~~~~~~ 314 (372)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999887766553343
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.014 Score=38.99 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=42.6
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 209 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++.+..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666654333 56777777666 3334 4455555666777777777777777777777765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.44 Score=44.05 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
+.+.|...+....... ..+.. ....+.......+...++...+...... ..+.....-.++.-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 22222 2222333344444344555555554422 23333344444445567888888
Q ss_pred HHHHhhCCCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 232 EKLLRRMPFEA-N-AAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 232 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
...|+.++..+ + ..-.--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888884332 2 22233344566677888888888887764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00017 Score=62.94 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=169.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
.+.+|+.|..+..+.+++.+|++.| ++..|+..|..++....+.|.+++-+.++....+..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3556888888999999998888877 444677788999999999999999999887665543233 333568889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc------------------------CCcch
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN------------------------KSVIT 143 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 143 (372)
.++..+-++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99877654443 145665566788889999999988888876642 26679
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI-EPKIEQYGCMIDLL 222 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~ 222 (372)
|..+-.+|...+.+.-|.-.--.+. +.|+ ....++..|...|.+++-+.+++... |+ ......++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 9999999999988877655444333 2222 23346778889999999888888877 33 34567777777777
Q ss_pred HhcCCHHHHHHHHhhC----CCC------CCHHHHHHHHHHHHHcCChhHHH
Q 017414 223 GRAGYLQEAEKLLRRM----PFE------ANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~----~~~------~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++- ++++..+.++.. ++. -....|..++-.|....+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 665 566666666544 221 13456888888888888888664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.24 Score=37.29 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
.+.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44456667777777776655 3456777777777777777777777776542 222333344456666665
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
.+-+....+ | + ++.-...+...|+++++.++|.+.+.-|.. .......|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g---~---~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E---D---FGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c---c---HHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 555554432 2 1 334445566777777777777776532211 11122345556666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.031 Score=38.19 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLE-------PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+...+..+...+...|+++.|...++.+.+.. +..+.++..|+.++.+.|+++.|...+++....
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355667788899999999999999999998842 234568899999999999999999999988653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.08 E-value=2.5e-07 Score=80.22 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=162.6
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+..|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++...++..-+|. +=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHH
Confidence 4568999999999999999998877433 2444678899999999999999999988877643443 4467999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA--------------------RVKPNEIT 178 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p~~~~ 178 (372)
+|++.+++.+-.+++. .||..-......-|...|.++.|.-+|..+-.- .-..+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999999876554432 356656666777777777777776666543211 01234567
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNI 256 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~ 256 (372)
|.-+-.+|...+.+.-|...--.+.-. ++ ....++..|-..|.+++-+.+++.. +. +.....|+.|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 777777888777777665544333311 11 1224677778888888888888775 33 3567778888888887
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. ++++..+.++.... .-+-| -++++|....-|.++.=++..
T Consensus 276 Y-~PeKlmEHlklf~s-riNip----KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 276 F-KPQKMREHLELFWS-RVNIP----KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp S-CTTHHHHHHTTSSS-SSCCT----TTHHHHTTTTCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH-hccHH----HHHHHHHHHhhHHHHHHHHhc
Confidence 6 34444444433222 11122 377888888888888877664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.11 Score=36.50 Aligned_cols=90 Identities=12% Similarity=-0.046 Sum_probs=56.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH---HHHHHHHhHHhcCCCc--CHHHHHHHHHHHHh
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL---GRRYFNIMKSRYGIEP--KIEQYGCMIDLLGR 224 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 224 (372)
.-........+.+.|.+....|. |+..+-..+..++.++.+... ++.+++.+... + .| .......|.-++.+
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHH
Confidence 33334445556666666655543 566666666667777766555 77788877743 2 23 23444556677888
Q ss_pred cCCHHHHHHHHhhC-CCCC
Q 017414 225 AGYLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~ 242 (372)
.|++++|.+.++.+ ...|
T Consensus 87 lg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 88888888888877 4445
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.32 Score=34.91 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
++.+.|++++|.++.+.+++..|.+
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4445555555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.32 Score=34.58 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 124 GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
|++......+-.+. .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444444433332 2334455566777788888888888887544 246777777788888888888888888888887
Q ss_pred HhcCCC
Q 017414 204 SRYGIE 209 (372)
Q Consensus 204 ~~~~~~ 209 (372)
++ |++
T Consensus 153 ~k-G~k 157 (172)
T 1wy6_A 153 KK-GEK 157 (172)
T ss_dssp HT-TCH
T ss_pred Hh-hhH
Confidence 65 653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.084 Score=38.29 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 225 AGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 225 ~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
.++.++|.++|+.+ ..+- ...|......-.++|+...|.+++.+++.+.|.........+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 36677777777766 2122 666777777777888888888888888888876554444333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.25 Score=35.03 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhCCC-CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 242 ANAAIWGSLLAASNIYGDV---ELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+..+--.+..++.+..+. .+++.+++.+.+.+|. .......|..++.+.|+++.|.+..+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444332 2444455555444442 2233444455555555555555555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.76 Score=46.13 Aligned_cols=163 Identities=10% Similarity=0.035 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 92 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 92 (372)
..++..+...+..+.|.++...+.. ++..--.+..++...|++++|.+.|++.-. |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3466667777888777776665544 444446677888888899999888877532 222111000 0000
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCc----chHHHHHHHHHhcCChhHHHH
Q 017414 93 LGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSV----ITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 93 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~ 162 (372)
. +..+.... ...-...|..++..+.+.|.++.+.++-.... ..+. ..|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 11223456667777777777777776655332 1111 257778888888899999888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
.+-.+.....+ ...+..|+...|..|..+
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 88777654332 345666666666555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.11 Score=48.88 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHhcccCc-hHHHHHHHHHhHHhcCCCcCHHHH--HHHHHHHHhcCC-HHHHHHHHhhC---------CCCC-CH
Q 017414 179 FIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQY--GCMIDLLGRAGY-LQEAEKLLRRM---------PFEA-NA 244 (372)
Q Consensus 179 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~---------~~~~-~~ 244 (372)
...++..+...++ .+.|..+++++.++ .|....+ ..++..+...+. --+|.+++.+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3455555555666 58899999998864 4443332 233333333322 22333333222 1111 11
Q ss_pred H----------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 245 A----------IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 245 ~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
. ....=...|...|+++.|..+.+++...-|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11111334567899999999999999999999999999999999999999999999988
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.098 Score=42.84 Aligned_cols=90 Identities=13% Similarity=-0.005 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCC--CC---hhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHH
Q 017414 25 LNNARALFELMTE--KN---VISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-GAVEL 93 (372)
Q Consensus 25 ~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~ 93 (372)
...|...+++..+ |+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++......++.. ++.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4556666666654 43 45788899888884 89999999999998853212367777788888774 88999
Q ss_pred HHHHHHHHHHcCCC--CchhHHH
Q 017414 94 GEWIHNYIEQYGLN--TIVPLNN 114 (372)
Q Consensus 94 a~~~~~~~~~~~~~--~~~~~~~ 114 (372)
+.+.+++..+.... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 99999999887554 5444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.28 Score=35.63 Aligned_cols=100 Identities=7% Similarity=-0.061 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHhhC--CCCCCH-HHHHHHHH------HHHHcCChhHHHHHHHHHHHhCC
Q 017414 211 KIEQYGCMIDLLGRAGYL------QEAEKLLRRM--PFEANA-AIWGSLLA------ASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~--~~~~~~-~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
|..+|-..+...-+.|+. ++..++|++. .++|+. ..|...+. .+...++.++|.++|+.+..+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 444555555555555555 5555666655 233321 11222111 22344899999999999988754
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 276 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
.=..+|......-.++|+...|.+++......+.+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44567777777788999999999999988776554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.13 Score=44.72 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH-----hCCCccCCce
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMPGC 315 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~ 315 (372)
..++.++...|+++++...++.+...+|.+...+..|+.++.+.|+..+|.+.|+.+. +.|+.|.|..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456667778888888888888888888888888888888888888888888888774 3577776543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.93 E-value=1.8 Score=41.93 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.8
Q ss_pred ccCchHHHHHHHHHhH
Q 017414 188 HVGLVELGRRYFNIMK 203 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~ 203 (372)
..|+.+.+..+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3444455555554444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.81 E-value=2.6 Score=35.35 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHH----HHHHhCCCCCCHHHHHHHHHHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLF----RRMQVENVKPDEIAMLAALSACA 86 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~ 86 (372)
.|.++..-|.+++++++|++++- .-...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555555666666666666542 2333455667766554443 44455678888888777877776
Q ss_pred ccCChH-----HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhH
Q 017414 87 QLGAVE-----LGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 87 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (372)
....-+ -..+.+.+-.+.| ..-++.....+...|.+.+++.+|...|---.++++..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 665321 1112222223333 233677788888999999999999888743222233566555544444332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
++...-.+++ -|...++...|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34455677777776665553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.81 E-value=0.55 Score=31.32 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 456677788888888899999999999999999999999999999999765443 456666664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.67 E-value=2.7 Score=35.00 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHhCCCccHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHcCC--CCchhHHHHH
Q 017414 48 AGYAQMDQPNEAITL----FRRMQVENVKPDEIAMLAALSACAQLGAV-----ELGEWIHNYIEQYGL--NTIVPLNNAL 116 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l 116 (372)
..+.+.|+...|-++ .+...+.+++++......++..+.....- +-..+......+.|- .-++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345566776655443 44455567788887777777776554321 222233333333332 2366778888
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH---GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
...|.+.|++.+|...|-.-...+...+..++.-+... |...++ +...-.+++ -|...|+..
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~ 205 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNIS 205 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHH
Confidence 88888888888888877533222444554444443333 322221 111111222 344567888
Q ss_pred HHHHHHHHhHHh
Q 017414 194 LGRRYFNIMKSR 205 (372)
Q Consensus 194 ~a~~~~~~~~~~ 205 (372)
.|..+++...++
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.6 Score=34.54 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
+...-..+..+|.+.+++++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34444556777777788888888777774
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.41 Score=35.42 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=12.4
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 017414 250 LLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~ 270 (372)
+..++...+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 445566666666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.05 E-value=6.9 Score=37.96 Aligned_cols=250 Identities=11% Similarity=-0.004 Sum_probs=135.3
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChh--hHHHHHHHHHhCCCccHHHHHHHHHHhCCC--C-----CCHHHHHHHHHH
Q 017414 18 GYAKVGDLNNARALFELMTE----KNVI--SWTTLIAGYAQMDQPNEAITLFRRMQVENV--K-----PDEIAMLAALSA 84 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~-----p~~~~~~~l~~~ 84 (372)
+....|+.++++.+++.... .+.. .=..+.-+.+..|..+++..++...+...- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888877654 1222 223344556667766678887777654321 0 111112223233
Q ss_pred HHccCC-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcccC-Ccch--HHHHHHHHHhcCChh
Q 017414 85 CAQLGA-VELGEWIHNYIEQYGLNTIV--PLNNALIDMYAKSGKIGKALQVFENMKNK-SVIT--WTTMIAGLALHGLGR 158 (372)
Q Consensus 85 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~ 158 (372)
.+-.|. -+++...+..+.... .+.. ..-..|...+...|+-+....++..+.+. +... ..++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333343 234555555555432 1111 11223445566778877777777765432 2222 233334455789999
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 159 EALDMFSRMERARVKPNEI--TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.+..+++.+.... .|... ...++.-+|+..|+.....+++..+.+ ....++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9998888887641 22221 122445678999999888889999985 333344444444455555677666777776
Q ss_pred hCCCCCCHHHHHH--HHHHHHHcCCh-hHHHHHHHHHH
Q 017414 237 RMPFEANAAIWGS--LLAASNIYGDV-ELGECALQHLI 271 (372)
Q Consensus 237 ~~~~~~~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~ 271 (372)
.+....|..+-.. +.-+....|.. .++...+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5521223333222 33333444443 45666666664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.04 E-value=8.2 Score=38.79 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC----C----------------------cchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKNK----S----------------------VITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
-.++.+|...|++++|.++|++.... + ..=|..++..+-+.+.++.+.++-...
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44667777888888888888765421 0 012455666666777777777666655
Q ss_pred HHcCCCCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 168 ERARVKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 168 ~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
.+....-+. ..|..+.+.+...|++++|...+-.+... ..-......|+...|..|..+
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChh
Confidence 543211111 14566667777777777777776666532 223344555665555555433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.8 Score=43.24 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHhcccCCcch--H--HHHHHHHHhcC-ChhHHHHHHHHHHHc------CCCC-CH----
Q 017414 114 NALIDMYAKSGK-IGKALQVFENMKNKSVIT--W--TTMIAGLALHG-LGREALDMFSRMERA------RVKP-NE---- 176 (372)
Q Consensus 114 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~--~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p-~~---- 176 (372)
..|+..+...|+ .+.|..+|+++.+.++.. + .+++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455666666666 577888888877544421 1 12222222222 122355555444321 1111 11
Q ss_pred ------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 177 ------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 177 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
.....=.+-|...|+++-|..+-++... -.+.+-.+|..|..+|...|+++.|+-.+..+|
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1112223445678999999999999884 234456899999999999999999999998885
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=1.2 Score=38.54 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHH---hcCCHHHHHHHHhccCC-------CCh------------------hhHHHHHHHHHhCCCccHH
Q 017414 8 LYKFWNTMVAGYA---KVGDLNNARALFELMTE-------KNV------------------ISWTTLIAGYAQMDQPNEA 59 (372)
Q Consensus 8 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~-------~~~------------------~~~~~l~~~~~~~~~~~~A 59 (372)
|...|..++.... ..|+.+.|...+..... ++. .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444555554332 35788887777766543 111 0123344555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCchhHH
Q 017414 60 ITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-----YGLNTIVPLN 113 (372)
Q Consensus 60 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 113 (372)
+..+..+.... +.+...|..++.++.+.|+..+|.+.|+...+ .|+.|+..+-
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 76666666542 34666677777777777777777777666542 4666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.93 E-value=6.2 Score=34.81 Aligned_cols=185 Identities=9% Similarity=0.062 Sum_probs=119.2
Q ss_pred CCccHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 017414 54 DQPNEAITLFRRMQVE-----NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVP--LNNALIDMYAKSGK 125 (372)
Q Consensus 54 ~~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~ 125 (372)
|+++.|++.+..+.+. ....+......++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 7788998888666542 34456777888999999999999998888776644 3222211 12222333333333
Q ss_pred HH--HHHHHHHhcccC--C---c-----chHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhcc
Q 017414 126 IG--KALQVFENMKNK--S---V-----ITWTTMIAGLALHGLGREALDMFSRMERA--RVKPN---EITFIAILSACCH 188 (372)
Q Consensus 126 ~~--~A~~~~~~~~~~--~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 188 (372)
.+ .-..+.+.+..- + . .....|...|...|++.+|.+++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 233344433321 1 1 23456788899999999999999998753 22222 2456667788999
Q ss_pred cCchHHHHHHHHHhHHhc-CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 189 VGLVELGRRYFNIMKSRY-GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.+++.+|..++.++.... ...++ ...+...+..+...+++.+|.+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999875321 12222 244566777888889999998887765
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.93 Score=32.05 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+-++.+.+. ...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 44566777788888889999999999999999999999999999999976543 3556766664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.35 E-value=1.7 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455666666667778888888888888888888888888888777542 333455655543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.28 E-value=3.6 Score=33.19 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=71.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
....+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+...-..+.+...++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 34556778888888777777663 44666666777888888888888888877773 244432222121222121
Q ss_pred HHHHH-HHhhC--C--CCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 229 QEAEK-LLRRM--P--FEANAAIWGSLLAASN--IYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 229 ~~a~~-~~~~~--~--~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+.... +|.-- | +.....-...++.+.. ..|+.+.|..+-..+.+.-|..+...+
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 22222 22211 1 1112223344444443 458888888888888887776655333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.64 E-value=3 Score=29.51 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=47.6
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 209 EPKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.|++.+--.+..++.+.... .+++.+++.+ ...| ....+-.|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 45666666666666666554 3566666666 2234 23344555668888888888888888888888877643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.31 E-value=4.6 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.025 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhCCCC-cchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 241 EANAAIWGSLLAASNIYGDV---ELGECALQHLIKLEPHN-SGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.|+..+-..+..++.+..+. .+++.+++.+.+..|.. ......|..++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555555555433 35556666666555532 23445556666666666666666666544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=89.18 E-value=6 Score=30.09 Aligned_cols=179 Identities=9% Similarity=0.013 Sum_probs=89.2
Q ss_pred HHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 017414 30 ALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 109 (372)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 109 (372)
.+++.+..+|.......+..+.+.+.... ...+.++.. .++...-...+.++...++.+....+. .+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCC
Confidence 34444455555555555555555554333 333333332 345445445555555555543332222 2222 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
..+-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 5555566666666666544444455555566656666666666666543 4444444443 24555555555566555
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (372)
|.. .+...+..+... ++...-...+.++.+.
T Consensus 166 ~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 166 GGE-RVRAAMEKLAET----GTGFARKVAVNYLETH 196 (201)
T ss_dssp CSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHC
T ss_pred Cch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 553 344555555432 3444444445554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.92 E-value=9.4 Score=32.00 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF----SRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
.+|.++..=|.+.+++++|++++..- ...+.+.|+...|-++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34556666788888888888876532 23455666665554443 4455567788887777777776
Q ss_pred cccCchHH-HHHHHHHhHH---hcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 187 CHVGLVEL-GRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 187 ~~~~~~~~-a~~~~~~~~~---~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.....-+- =..+.+.+.+ +.|- .=++.....+...|.+.+++.+|...|-
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 65443111 1222222221 1121 2256677788888999999999888774
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.31 E-value=1.6 Score=28.89 Aligned_cols=59 Identities=12% Similarity=-0.051 Sum_probs=34.1
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 113 (372)
..+...|++++|..+.+.. ..||...|..|. -.+.|-.+++...+..+...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455677777776655433 367766665442 346666666666666666655 4444333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.26 E-value=1.8 Score=28.75 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=44.0
Q ss_pred CHHHHHHHHhccCC-CChhhHHHHH--HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNVISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 100 (372)
..++|..+-+.+.. ++ .-.-.+| ..+...|++++|..+.+.. ..||...|..|. -.+.|-.+++...+..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 44555555444432 22 2222233 3456677777777665544 367777765443 3456666666666666
Q ss_pred HHHcCCCCchhHH
Q 017414 101 IEQYGLNTIVPLN 113 (372)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (372)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 66555 4444333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.80 E-value=4.4 Score=26.89 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+..--||...|.+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766552 22222233455677788888888888777777777766644 467777777777766666
Q ss_pred cCCCCCHHHHH
Q 017414 170 ARVKPNEITFI 180 (372)
Q Consensus 170 ~~~~p~~~~~~ 180 (372)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.34 E-value=4.8 Score=26.78 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+..--||...|.+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776552 22222233455677788888888888877778777766644 466777777777766665
Q ss_pred cCCCCCHHHHH
Q 017414 170 ARVKPNEITFI 180 (372)
Q Consensus 170 ~~~~p~~~~~~ 180 (372)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.93 E-value=8.8 Score=29.41 Aligned_cols=187 Identities=11% Similarity=0.033 Sum_probs=114.8
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 017414 23 GDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
++.+....+.+.+..++...-...+..+.+.|.. .+...+..+.. .++...-...+.++.+.++.+....+ ..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHH-HHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHH
Confidence 3444455555666667777777777777777764 34444445544 35666666777777777765433333 3333
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
. .++..+-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 2 4666677777888888887665555566566677777777788888887754 4555555543 4566666666
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+.++.+.+. ..+...+..+.+. ++...-...+.++.+.+
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 677777666 4555566666543 45555555566655544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.80 E-value=4.6 Score=28.60 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 59 AITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 59 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
..+-++.+....+.|++......+++|.+.+|+..|.++++-++..- .+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 34444455555566777777777777777777777777776666442 23344454444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.96 E-value=18 Score=31.19 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCcchH---
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY-GLNT---IVPLNNALIDMYAKSG-KIGKALQVFENMKN---KSVITW--- 144 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 144 (372)
.....|...|.+.|+.++...++.....- +..+ .......|++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888877765432 1111 2344566777776643 33333333333321 122233
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CCCcCHHHH
Q 017414 145 ---TTMIAGLALHGLGREALDMFSRMERARVKPN-----EITFIAILSACCHVGLVELGRRYFNIMKSRY-GIEPKIEQY 215 (372)
Q Consensus 145 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 215 (372)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2567788888888888888888776311112 1234455667778888888888887775421 122333322
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHhhC
Q 017414 216 GC----MIDLLG-RAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~----li~~~~-~~g~~~~a~~~~~~~ 238 (372)
.. -...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 21 123445 678888888777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.50 E-value=18 Score=30.02 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHh
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM----FSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566777788888888888886542 2445666776665554 45555668888888888888776
Q ss_pred cccCchH-HHHHHHHHhHH---hcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 187 CHVGLVE-LGRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 187 ~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.....-+ .=.++.+.+.+ +.|- .-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5532111 11233333331 1121 1266778889999999999999988764
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.85 E-value=14 Score=28.29 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 258 GDVELGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
++......+|..+.. ++-.....|...+..+...|++++|.++|+.=..++-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345677778877776 445566677788888888888888888887665555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.18 E-value=12 Score=32.74 Aligned_cols=94 Identities=10% Similarity=-0.083 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHH--HH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERA---RVKPNEIT--FI 180 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~--~~ 180 (372)
+...++..|.+.|++++|.+.|.++... -...+-..+..+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566778888888888888888777631 1245666777777778888888777776542 22232221 11
Q ss_pred HHHHHhcccCchHHHHHHHHHhHHh
Q 017414 181 AILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222344567777777777666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.06 E-value=26 Score=30.82 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCHHHHHHHHhccCC-----C----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----cc
Q 017414 23 GDLNNARALFELMTE-----K----NVISWTTLIAGYAQMDQPNEAITLFRRMQVE-NVKPDEIAMLAALSACA----QL 88 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~----~~ 88 (372)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+..+.+. |..+ .....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 566777666544432 1 2334666777777777777776666555433 2222 22223333222 22
Q ss_pred CChHHHHH--HHHHHHH--cC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhccc----CC-----cchHHHHHHHH
Q 017414 89 GAVELGEW--IHNYIEQ--YG-LNT---IVPLNNALIDMYAKSGKIGKALQVFENMKN----KS-----VITWTTMIAGL 151 (372)
Q Consensus 89 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~ 151 (372)
...+.... +.+.+.. .| +-. .......|...|...|++.+|..++..+.. .+ +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222111 1111100 01 001 122335567777777888888777776642 11 23555666777
Q ss_pred HhcCChhHHHHHHHHHH
Q 017414 152 ALHGLGREALDMFSRME 168 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~ 168 (372)
...+++..|..++.++.
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77778877777777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.77 E-value=4 Score=32.94 Aligned_cols=58 Identities=29% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
..+.+.|.+++|+.....- ..+| |...-..|+..++-.|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4566889999998877655 4345 77777888889999999999999999999999853
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.44 E-value=25 Score=30.28 Aligned_cols=281 Identities=9% Similarity=0.005 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhhHHHHHHHHHhC-CCccHHHHHHHHHHhCCCCCCHHHH--
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--------KNVISWTTLIAGYAQM-DQPNEAITLFRRMQVENVKPDEIAM-- 78 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~-- 78 (372)
.....+...|.+.|+.++...++..... .....-..++..+... +..+.-.++..+..+.. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566789999999999999999988775 1334566778777765 33444444444444321 1111122
Q ss_pred ----HHHHHHHHccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhccc------CCcch
Q 017414 79 ----LAALSACAQLGAVELGEWIHNYIEQYGLNTI-----VPLNNALIDMYAKSGKIGKALQVFENMKN------KSVIT 143 (372)
Q Consensus 79 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~ 143 (372)
..++..|...|++.+|..++..+.+.--..| ..++..-+..|...|++.++...+..... +++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577889999999999998888876411212 34455567788899999999888876642 22221
Q ss_pred H----HHHHHHHH-hcCChhHHHHHHHHHHHc-C-C-CC---CHHHHHHHHHHhcccCchHHHHHHH-HHhHHhcCCCcC
Q 017414 144 W----TTMIAGLA-LHGLGREALDMFSRMERA-R-V-KP---NEITFIAILSACCHVGLVELGRRYF-NIMKSRYGIEPK 211 (372)
Q Consensus 144 ~----~~l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 211 (372)
. ..-.-.+. ..++|..|...|-+..+. . . .| +...|..+..... .. ..+...++ ......+ ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~-r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQ-SDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TC-GGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CC-HHHHHHHhcccccccc-CCcc
Confidence 1 11122355 688999998887765431 1 0 11 1223433333222 22 22222222 1222122 3455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH------hCCCCcchHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK------LEPHNSGNYAI 283 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~ 283 (372)
...+..++.+| ..+++.+...+++.. .+..|......+ ..+++.+.. ..|-....+..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~ 321 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHH
Confidence 56666666665 566887777777776 334455432111 112222211 45666667777
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 284 LSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+...+.- ..+++...+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 7766643 678999999999877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 372 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 37/305 (12%), Positives = 79/305 (25%), Gaps = 7/305 (2%)
Query: 19 YAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75
+ GD A + + N L + + Q + + + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLL 66
Query: 76 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 135
+ L + H + L +G + A+Q + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 136 MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195
+ + L + + +A C E+
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP--FEANAAIWGSLLAA 253
+ K+ ++ Y + ++L A A R +A + G+L
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMP 313
G ++L + I+L+PH Y L+N G E+ +
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 314 GCSYI 318
+ +
Sbjct: 307 SLNNL 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.38 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.92 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.82 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.74 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.52 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.17 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.87 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.83 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.45 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.1e-22 Score=171.20 Aligned_cols=287 Identities=13% Similarity=0.034 Sum_probs=216.7
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 017414 16 VAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 92 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 92 (372)
...+.+.|++++|++.|+++.+ | +..++..+..+|.+.|++++|+..|++..+.. +-+..++..+..++.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 3445555666666666655543 2 34455555566666666666666666655532 223445555556666666666
Q ss_pred HHHHHHHHHHHcC-------------------------------------------------------------------
Q 017414 93 LGEWIHNYIEQYG------------------------------------------------------------------- 105 (372)
Q Consensus 93 ~a~~~~~~~~~~~------------------------------------------------------------------- 105 (372)
+|...+....+..
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 6655554443321
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 106 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
.+.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++....+ +.+...+..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 122345566677888889999999999987653 345688899999999999999999999988874 4466778888
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 260 (372)
...+.+.|++++|...|+++.+ -.+.+..++..+..++...|++++|.+.++.. ..+.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence 8899999999999999999985 33446788899999999999999999999887 3345777888899999999999
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++|+..++++.+..|.++.++..++.+|...|++++|.+.|++..+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-21 Score=167.60 Aligned_cols=287 Identities=13% Similarity=0.086 Sum_probs=246.7
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC--------
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENV-------- 71 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-------- 71 (372)
...|.++.++..+..+|.+.|++++|+..|++..+ | +..+|..+..++.+.|++++|+..+....+...
T Consensus 27 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 106 (388)
T d1w3ba_ 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Confidence 35677899999999999999999999999999875 4 567899999999999999999999987755321
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHccCChH
Q 017414 72 -----------------------------------------------------------KPDEIAMLAALSACAQLGAVE 92 (372)
Q Consensus 72 -----------------------------------------------------------~p~~~~~~~l~~~~~~~~~~~ 92 (372)
+-+...+..+...+...|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHH
Confidence 112345556667788889999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 93 LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
.|...++...+.. +.+...+..+...+...|++++|...|++..+ .+...+..+...+.+.|++++|+..|++..+
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 265 (388)
T d1w3ba_ 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998875 55678889999999999999999999998764 4556788899999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHH
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIW 247 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~ 247 (372)
.. +-+..++..+...+...|++++|...++.... ..+.+...+..+...+...|++++|...|++. ...| +..++
T Consensus 266 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T d1w3ba_ 266 LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 33567888899999999999999999999986 44667788899999999999999999999986 5566 56778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
..+..++...|++++|...++++++++|+++.+|..|+.+|.+.||
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999999999998886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.5e-16 Score=132.56 Aligned_cols=251 Identities=12% Similarity=-0.006 Sum_probs=177.4
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...+.++.+.. +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555667777777777777777643 2345666677777777777777777777776654 345566666777777777
Q ss_pred CHHHHHHHHHhcccCCc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 017414 125 KIGKALQVFENMKNKSV------------------ITWTTMIAGLALHGLGREALDMFSRMERARV-KPNEITFIAILSA 185 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~ 185 (372)
++++|.+.+++....+. ......+..+...+.+.+|.+.+.+...... .++...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 77777777766542110 1111222344556677888888888776532 3456677788888
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 263 (372)
+...|++++|...+++.... .+-+...|..+..+|...|++++|.+.|++. ...| +..+|..+..+|...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998853 2345788889999999999999999999987 4445 567788899999999999999
Q ss_pred HHHHHHHHHhCCCCcc-----------hHHHHHHHHHHcCCchhHHH
Q 017414 264 ECALQHLIKLEPHNSG-----------NYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~~ 299 (372)
+..|++++++.|.+.. .|..+..++...|+.+.+..
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998776553 34556667777777765544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.8e-16 Score=130.71 Aligned_cols=226 Identities=12% Similarity=-0.007 Sum_probs=185.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGL 156 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 156 (372)
.....+.+.|++++|...|+.+++.. |.+...|..++.+|...|++++|...|++..+ .+...|..++..|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45667889999999999999999875 55688899999999999999999999998764 356788999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 157 GREALDMFSRMERARVKPN--------------EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
+++|.+.+++......... .......+..+...+.+.+|...+.++.+...-.++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999999887531100 00111122233445677888888888875433345677888899999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
...|++++|...|++. ...| +...|..+...+...|++++|...++++.+.+|.++.++..++.+|.+.|++++|++.
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 3344 5778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 017414 301 RKVMRD 306 (372)
Q Consensus 301 ~~~m~~ 306 (372)
|++...
T Consensus 263 ~~~al~ 268 (323)
T d1fcha_ 263 FLEALN 268 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=6.5e-11 Score=100.42 Aligned_cols=263 Identities=14% Similarity=0.020 Sum_probs=165.9
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CC---chhHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NT---IVPLNN 114 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~ 114 (372)
......+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+... .. ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3344556677777777777777766421111 23455566667777777777777776654211 11 123445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHH
Q 017414 115 ALIDMYAKSGKIGKALQVFENMKN-------KS----VITWTTMIAGLALHGLGREALDMFSRMERAR----VKPNEITF 179 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~ 179 (372)
.+...+...|++..+...+.+... +. ...+..+...+...|+++.+...+....... ......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 566677777777777777665431 11 1245556677778888888888887776532 12223445
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-----CHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEP-----KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-----NAAIWG 248 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-----~~~~~~ 248 (372)
......+...++...+...+........... ....+..+...+...|++++|...+++. ...| ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5556666777788877777766554221111 1234455666777888888888888876 2221 234456
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHh------CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 249 SLLAASNIYGDVELGECALQHLIKL------EPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+..++...|++++|...++++... .|....++..++.+|...|++++|.+.+++...
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777888888999888888887752 233455778888888899999999888887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.5e-10 Score=98.16 Aligned_cols=291 Identities=11% Similarity=-0.013 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCC----H
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE--KN------VISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPD----E 75 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~ 75 (372)
..........+...|++++|++++++..+ |+ ...++.+..++...|++++|+..|++..+... .++ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 34455567778899999999999988653 32 24677888999999999999999998865311 112 2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY----GLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKNK--------S 140 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 140 (372)
..+..+...+...|++..+...+...... +.+.. ...+..+...+...|+++.+...+...... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34566777888999999999998877642 21221 235566788899999999999999876531 2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC--cCH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERA----RVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIE--PKI 212 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 212 (372)
..++......+...+.+.++...+.+.... +..+. ...+..+...+...|+++.|...+........-. ...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 235666677788899999999988876542 11111 2345556677888999999999999887431111 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC--------
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPH-------- 276 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-------- 276 (372)
..+..+..++...|++++|...+++. +..|+ ...+..+...+...|++++|...++++.++.+.
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~ 331 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 331 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 45667888999999999999998876 33343 346777788999999999999999999875422
Q ss_pred -CcchHHHHHHHHHHcCCchhHHH
Q 017414 277 -NSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 277 -~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
.......++..+...++.+++.+
T Consensus 332 ~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 332 IEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHH
Confidence 11234445566667777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.5e-11 Score=98.26 Aligned_cols=209 Identities=12% Similarity=0.060 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
..|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++.+.+.. +.+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 467777778888888999999999988853 335667788887877766 5889999998888875 5678888888888
Q ss_pred HHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc------C
Q 017414 120 YAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV------G 190 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------~ 190 (372)
+.+.|++++|+..++++.+ .+..+|..+...+...|++++|++.++++++.++ -+...|+.+...+.+. +
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 8889999999998888764 3567888888888889999999999998888742 3455666554444333 3
Q ss_pred chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHH
Q 017414 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASN 255 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~ 255 (372)
.+++|...+..+.+. .+.+...|..+...+...| .+++.+.++.. +...+...+..++..+.
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 467788888777743 2345666666665554433 45555555444 32334555566665554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.2e-10 Score=97.12 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=155.3
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 57 NEAITLFRRMQVENVKPDEIAMLAALSACAQ--------------LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 57 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
+++..+|++++.. ++.+...|...+.-+.+ .+..++|..++++..+...+.+...|..++..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4456667776654 23445555444433221 22457788888888876545566778888888889
Q ss_pred cCCHHHHHHHHHhcccC---C-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HhcccCchHHHHH
Q 017414 123 SGKIGKALQVFENMKNK---S-VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS-ACCHVGLVELGRR 197 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~ 197 (372)
.|+++.|..+|+++.+. + ..+|...+..+.+.|+.+.|.++|++..+.+.. +...|..... -+...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999887642 2 236788888888899999999999988876433 3333333222 2344678899999
Q ss_pred HHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 198 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA--NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
+|+.+.+. .+.++..|...++.+.+.|+++.|..+|++. +..| ....|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998864 3456778888888888999999999999886 3344 24578888887788899999999999888
Q ss_pred HhCCCCc
Q 017414 272 KLEPHNS 278 (372)
Q Consensus 272 ~~~p~~~ 278 (372)
+..|...
T Consensus 269 ~~~~~~~ 275 (308)
T d2onda1 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHCcccc
Confidence 8777553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2.1e-11 Score=99.01 Aligned_cols=221 Identities=8% Similarity=-0.016 Sum_probs=135.2
Q ss_pred ccHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 017414 56 PNEAITLFRRMQVENV-KP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 132 (372)
.+.++.-+++...... .+ ...+|..+..++.+.|++++|...|++.++.. |.+..+|..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555566554321 11 12356666777788888888888888888764 55677788888888888888888888
Q ss_pred HHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 133 FENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 133 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
|++..+ .+..++..+..+|...|++++|.+.|++..+.. +.+......+...+.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 887764 245577778888888888888888888887763 223433333334444555555555555544421 2
Q ss_pred cCHHHHHHHHHHHHhcCC----HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 210 PKIEQYGCMIDLLGRAGY----LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+....+. ++..+..... .+.+...+... ...| ...+|..+...+...|++++|...|++++..+|.+...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 2233322222 22222222211 1122 2345667788899999999999999999999997764443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.3e-10 Score=97.01 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCcchHHHHHHH
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAG 150 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~ 150 (372)
...++.+...+.+.+..++|...++.+++.. |-+...|+....++...| ++++|+..+++..+ .+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 4466677777888999999999999999986 667788899999988876 59999999998764 456799999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY--- 227 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 227 (372)
+.+.|++++|++.++++.+.. +.+...|..+...+...|++++|...++.+.+. -+.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 999999999999999999874 346788999999999999999999999999953 23467778877777666554
Q ss_pred ---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc--chHHHHHHHHHHc--CCchhHH
Q 017414 228 ---LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS--GNYAILSNIYAIL--GRWNESG 298 (372)
Q Consensus 228 ---~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~a~ 298 (372)
+++|++.+.+. ...| +...|..+...+. ....+++...++.+.++.|... ..+..++..|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 67888888776 4445 5667776666554 4456888899999999887643 3455666766543 5555555
Q ss_pred HHHHH
Q 017414 299 KIRKV 303 (372)
Q Consensus 299 ~~~~~ 303 (372)
..+++
T Consensus 278 ~~~~k 282 (315)
T d2h6fa1 278 DILNK 282 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=6.4e-12 Score=106.37 Aligned_cols=270 Identities=7% Similarity=-0.069 Sum_probs=194.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--CCh-hhHHHHHHHH----------HhCCCccHHHHHHHHHHhCCCCCCHHHH
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--KNV-ISWTTLIAGY----------AQMDQPNEAITLFRRMQVENVKPDEIAM 78 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~----------~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 78 (372)
+..++....+.+..++|+++++...+ |+. ..|+..-..+ ...|++++|+.+++...+.. +-+...|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 34444444444556899999998875 543 3454433332 23345789999999988753 4466677
Q ss_pred HHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHH
Q 017414 79 LAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLN-NALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLA 152 (372)
Q Consensus 79 ~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 152 (372)
..+..++...+ +++++...+..+.+.. +++...+ ..+...+...|.+++|+..+++..+. +..+|+.+..++.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 77777776665 4789999999999875 4455554 44557788899999999999988764 4568888999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 153 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
+.|++++|...++...+. .|+. ..+...+...+..+++...+..... .-+++...+..++..+...|+.++|.
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 999999887766655443 1221 1222334455667778888877774 33455566667788888889999999
Q ss_pred HHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 233 KLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 233 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
..+.+. ...| +...+..+..++...|++++|...++++.+++|.+...|..|...+.-
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 999887 5556 456778888899999999999999999999999888888878766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.4e-09 Score=90.60 Aligned_cols=213 Identities=7% Similarity=-0.026 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--------------cCCHHHHHHHHHhccc----CCcchHHHHHHHHHh
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK--------------SGKIGKALQVFENMKN----KSVITWTTMIAGLAL 153 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 153 (372)
+.+..+|+++...- +.++.+|...+..+.+ .+..++|..+|++..+ .+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34555677766652 4455666555544332 2345788899988653 244578888889999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYLQEAE 232 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 232 (372)
.|+++.|..+|+++++.........|...+..+.+.|+.+.|..+|+.+.+. .+.+...|...... +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999987644334557888889999999999999999999853 23344555544443 34468999999
Q ss_pred HHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc----chHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 233 KLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS----GNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 233 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+|+.+ ....+...|..++..+...|+++.|..+|+++.+..|.++ ..|...+..-...|+.+.+.++++++..
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998 2234678899999999999999999999999999776544 3678888888889999999999998855
Q ss_pred C
Q 017414 307 M 307 (372)
Q Consensus 307 ~ 307 (372)
.
T Consensus 270 ~ 270 (308)
T d2onda1 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.1e-10 Score=94.72 Aligned_cols=213 Identities=13% Similarity=-0.045 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHcCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 91 VELGEWIHNYIEQYGL-NT--IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.+.+...++++..... .+ ...++..+..+|.+.|++++|++.|++..+ .++.+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3455555566654321 11 235677789999999999999999998764 46679999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
++..+... -+..++..+..++...|++++|...|+...+. .+.+......+..++.+.+..+.+..+.... ...++
T Consensus 95 ~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 95 DSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 99998742 34567888888999999999999999999864 2334444444555555666555444444433 11122
Q ss_pred HHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 244 AAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 244 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...+. ++..+.. .+..+.+...+.......|....+|..++..|...|++++|.+.|++....
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22222 1222211 122334444444444455656678889999999999999999999988654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=5.5e-11 Score=100.48 Aligned_cols=255 Identities=7% Similarity=-0.100 Sum_probs=184.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHH---HHHH-------ccCChHHHHHHHHHHHHcCCCCchh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAAL---SACA-------QLGAVELGEWIHNYIEQYGLNTIVP 111 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~---~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~ 111 (372)
...++......+..++|++++++.++. .|+.. .|+..- .... ..|.+++|...++.+.+.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 334444444444568999999999884 46543 444322 2222 2345788999999988875 66777
Q ss_pred HHHHHHHHHHhcCC--HHHHHHHHHhcccC---CcchHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017414 112 LNNALIDMYAKSGK--IGKALQVFENMKNK---SVITWT-TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185 (372)
Q Consensus 112 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 185 (372)
.|..+..++...++ +++|...+++..+. +...+. .....+...+.+++|+..+++....+. -+...+..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 88878877777664 88999999987643 444554 444677788999999999999888753 367788888889
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 263 (372)
+.+.|++++|...+....+. .|.. ..+...+...+..+++...+... ...++...+..+...+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 99999998887666655532 1211 22334455566666777766665 2233455566677788888999999
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 264 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...+.+..+.+|.+..++..++.++...|++++|.+.+++....
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=5e-08 Score=74.66 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
.|+. ...+...|+++.|++.|+.+..+++.+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence 3443 5566778888888888888777777778888888888888888888888887754 3456677777888888888
Q ss_pred hHHHHHHHHHHHHc
Q 017414 91 VELGEWIHNYIEQY 104 (372)
Q Consensus 91 ~~~a~~~~~~~~~~ 104 (372)
+++|...|++....
T Consensus 86 ~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1.4e-07 Score=77.44 Aligned_cols=161 Identities=13% Similarity=-0.028 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--chhH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL---NT--IVPL 112 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 112 (372)
|......|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|...++...+... .+ ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 455666777777777777777776542 1111 123566666777777777777777666553210 11 1233
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CH-
Q 017414 113 NNALIDMYAK-SGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERARVKP-----NE- 176 (372)
Q Consensus 113 ~~~l~~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~- 176 (372)
+..+...|.. .|++++|++.|++..+ .+ ..++..+...+...|++++|++.|++........ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 4444555533 4666666666655431 00 1245555556666666666666666655432111 10
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
..+...+..+...|+++.|...++...
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111222233444556666666655555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=7e-08 Score=73.81 Aligned_cols=139 Identities=9% Similarity=-0.009 Sum_probs=92.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
...+...|++++|++.|+++..++..+|..+..+|...|++++|++.|++.++.+ +.....|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5566777888888888888777777777788888888888888888888877764 335667777777788888888888
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
..|++.... .+.+... . +..+ ...++ ..++..+..++...|++++|.+.+..+.++
T Consensus 91 ~~~~kAl~~--~~~n~~~------~-------------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------D-------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------E-------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CccCchH------H-------------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888777632 1111100 0 0000 01111 234555666777888888888888888877
Q ss_pred CCCC
Q 017414 274 EPHN 277 (372)
Q Consensus 274 ~p~~ 277 (372)
.|..
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 7653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.3e-08 Score=78.64 Aligned_cols=116 Identities=9% Similarity=-0.112 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 017414 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 251 (372)
Q Consensus 174 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~ 251 (372)
|+...+......+.+.|++++|...|+++.+. -+.++..|..+..+|.+.|++++|+..|++. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66777777788888888888888888888753 2456777888888888888888888888877 5566 566788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.++...|++++|...++++.++.|.+...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776555544444444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=7.2e-08 Score=79.12 Aligned_cols=195 Identities=8% Similarity=-0.047 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CC-CCC
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE-----KN----VISWTTLIAGYAQMDQPNEAITLFRRMQVE----NV-KPD 74 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~-~p~ 74 (372)
...|......|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |. ...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 34689999999999999999999998764 22 357899999999999999999999987653 21 111
Q ss_pred HHHHHHHHHHHH-ccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---c----
Q 017414 75 EIAMLAALSACA-QLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNKS---V---- 141 (372)
Q Consensus 75 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---- 141 (372)
..++..+...+. ..|++++|...+.+..+. +.++ ...++..++..|...|++++|.+.|++..... .
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 345556666664 569999999999988643 2122 24567888999999999999999999876421 1
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC---HHHHHHHHHHhcc--cCchHHHHHHHHHhH
Q 017414 142 ---ITWTTMIAGLALHGLGREALDMFSRMERARVK-PN---EITFIAILSACCH--VGLVELGRRYFNIMK 203 (372)
Q Consensus 142 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 203 (372)
..+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|...|+.+.
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 13445566778899999999999998775321 11 2234455555544 334667777666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6.2e-08 Score=67.53 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=66.6
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 260 (372)
...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|+..+++. .+. .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44556667777777777776642 2445566666777777777777777777666 222 3556666777777777777
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
++|+..++++.+..|.++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777766665555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6.1e-08 Score=71.78 Aligned_cols=118 Identities=9% Similarity=-0.008 Sum_probs=94.6
Q ss_pred HHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 017414 181 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 258 (372)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 258 (372)
.....|.+.|++++|...|+++.+- -+.+...|..+..+|...|++++|...|++. ...| +...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455677889999999999999853 2446788889999999999999999999987 4445 6678999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHH--HHcCCchhHHHH
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIY--AILGRWNESGKI 300 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 300 (372)
++++|...++++.++.|.++.++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888877776553 344556666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=1.9e-08 Score=77.76 Aligned_cols=96 Identities=10% Similarity=-0.079 Sum_probs=82.9
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHH
Q 017414 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGC 217 (372)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 217 (372)
|+...+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...|+.+. .+.| ++.+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 455566778889999999999999999998874 4567888899999999999999999999998 4455 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~ 238 (372)
+..+|...|++++|+..|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999886
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.6e-08 Score=67.79 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCc
Q 017414 217 CMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 294 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 294 (372)
.-...+...|++++|+.+|++. ...| +...|..+..++...|++++|+..+.++++++|.++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999998 3344 6778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhC
Q 017414 295 NESGKIRKVMRDM 307 (372)
Q Consensus 295 ~~a~~~~~~m~~~ 307 (372)
++|+..|++....
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.74 E-value=2.7e-08 Score=68.81 Aligned_cols=89 Identities=18% Similarity=0.020 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677888999999999999998 4445 678899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHH
Q 017414 294 WNESGKIRKVM 304 (372)
Q Consensus 294 ~~~a~~~~~~m 304 (372)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.66 E-value=1.6e-05 Score=63.59 Aligned_cols=149 Identities=11% Similarity=-0.055 Sum_probs=87.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSA--CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYL 228 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 228 (372)
.+.+.|...++.....|...... ....... .........+...+..... ..+...+..|...|.. ..+.
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred hhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccc
Confidence 44566666666665554221111 1111111 1223445555666655553 2345555666666654 3456
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH----cCCchhHHHH
Q 017414 229 QEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKI 300 (372)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~ 300 (372)
..+...++......+......+...+.. ..+++.|...|+++.+.+ ++..+..|+.+|.. ..++++|.+.
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred ccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 6666666655222355555555555554 467888999998888875 45677888888875 4478889999
Q ss_pred HHHHHhCCCc
Q 017414 301 RKVMRDMGVK 310 (372)
Q Consensus 301 ~~~m~~~g~~ 310 (372)
|++..+.|-.
T Consensus 241 ~~kAa~~g~~ 250 (265)
T d1ouva_ 241 FKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHCcCH
Confidence 9888777754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=3.6e-07 Score=68.27 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.+......+.+.|++++|+..|.+.+...... .+....-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYE--------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 34445566777777777777777766531100 00000001111111 123567788899
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhH
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 297 (372)
.+.|++++|+..+++. .+.| ++..+..+..++...|++++|...|+++.+++|.++.+...+..+..+.+.....
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4455 7788999999999999999999999999999999998888888777666555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.3e-07 Score=69.86 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
......|.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|.+..+|..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566788999999999999998 3344 677889999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhC
Q 017414 294 WNESGKIRKVMRDM 307 (372)
Q Consensus 294 ~~~a~~~~~~m~~~ 307 (372)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.5e-07 Score=64.65 Aligned_cols=104 Identities=16% Similarity=0.059 Sum_probs=80.5
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCCCH---HHHHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEANA---AIWGSLLA 252 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~-~~~~~~---~~~~~l~~ 252 (372)
..++..+...+++++|++.|+..... -+.++.++..+..++.+.++ +++|+.+++++ ...|+. ..+..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777888999999999998853 24567888888888887554 45688888886 444433 36777888
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
+|...|++++|.+.|+++++++|.+..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999998876665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.2e-06 Score=63.79 Aligned_cols=63 Identities=6% Similarity=-0.032 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+|..+..+|.+.|++++|+..++.+++++|.++.++..++.+|...|++++|...|++....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356678888999999999999999999999999999999999999999999999999988664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=0.00011 Score=60.23 Aligned_cols=271 Identities=10% Similarity=0.029 Sum_probs=120.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
+.||..--..+.+.|.+.|.++.|..+|..+.. |.-++..+.+.++++.|.+++.+. -+..+|..+...
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 78 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 344555556667777777888778777776554 556666667777777766665543 133455555555
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
|.+......+ .+.......++.....++..|-..|.+++...+++... ..+...++-++..|++.+ .++..
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 5554444322 11112222333334455566666666666666666432 223334555555555543 22222
Q ss_pred HHHHHHHHcCCCCCH--------HHHHHHHHHhcccCchHHHHHHHHHh-------------HHhcCCCcCHHHHHHHHH
Q 017414 162 DMFSRMERARVKPNE--------ITFIAILSACCHVGLVELGRRYFNIM-------------KSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~~~~~~li~ 220 (372)
+.+...-. ...+.. ..|.-++-.|.+.|+++.|..+.-.- ..+ ..|+..|...+.
T Consensus 153 e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k---~~N~e~~~~~i~ 228 (336)
T d1b89a_ 153 EHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQ 228 (336)
T ss_dssp HHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHH
T ss_pred HHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc---cCChHHHHHHHH
Confidence 22222100 011100 11233444555555555554322111 101 123333334444
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH
Q 017414 221 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
.|.... .+-...++..++-..| ...++..+.+.++......+++...+.+ +..+...|...|...++++.-.+.
T Consensus 229 ~yL~~~-p~~i~~lL~~v~~~~d---~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 229 FYLEFK-PLLLNDLLMVLSPRLD---HTRAVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHC-GGGHHHHHHHHGGGCC---HHHHHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcC-HHHHHHHHHHhccCCC---HHHHHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHH
Confidence 443321 2222222222210111 1334445555666666667776654433 446888888888888887655444
Q ss_pred HH
Q 017414 301 RK 302 (372)
Q Consensus 301 ~~ 302 (372)
.+
T Consensus 303 i~ 304 (336)
T d1b89a_ 303 ID 304 (336)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=6.3e-07 Score=61.67 Aligned_cols=91 Identities=13% Similarity=-0.025 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
..+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..+++..+.. |.+...+..+..+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345566777788888888888777753 2356677777777777788888888887777764 45567777777777777
Q ss_pred CCHHHHHHHHHhc
Q 017414 124 GKIGKALQVFENM 136 (372)
Q Consensus 124 g~~~~A~~~~~~~ 136 (372)
|++++|.+.|++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=5.4e-06 Score=60.40 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+|..+..+|.+.|++++|+..++.+++++|.+..+|..++.++...|++++|...|++...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566777788888888888888888888888888888888888888888888888877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=2.8e-06 Score=63.17 Aligned_cols=85 Identities=8% Similarity=-0.064 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
....|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|+++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556777888999999999999999887 5555 6778999999999999999999999999999999988888877766
Q ss_pred HHcCCch
Q 017414 289 AILGRWN 295 (372)
Q Consensus 289 ~~~g~~~ 295 (372)
.+.....
T Consensus 156 ~~l~~~~ 162 (169)
T d1ihga1 156 QKIKAQK 162 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.39 E-value=2.4e-06 Score=62.34 Aligned_cols=127 Identities=11% Similarity=-0.062 Sum_probs=89.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.+...+..+.+.|++.+|+..|.+.+..- |. .......... .... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 45556667778888888888888776531 10 0000000000 0011 01234677889999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|.++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 4445 788999999999999999999999999999999998877766555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.1e-06 Score=61.33 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCCCC--cchHHHHHHHH
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHN--SGNYAILSNIY 288 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 288 (372)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.++ +++|+.+++++.+.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45788888999999999999998 3334 77888889988877554 457999999999887644 34788999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
.+.|++++|.+.|++....
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999998663
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.39 E-value=5.8e-06 Score=61.31 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
..|+.+..+|.+.|++++|+..+++. .+. .+...|..+..++...|++++|...|+++.+++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999987 333 4778899999999999999999999999999999999888888777766
Q ss_pred cCCchh-HHHHHHHH
Q 017414 291 LGRWNE-SGKIRKVM 304 (372)
Q Consensus 291 ~g~~~~-a~~~~~~m 304 (372)
.+...+ ..+++..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 655543 34455555
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.6e-06 Score=61.22 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc-------hHHHHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG-------NYAILS 285 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 285 (372)
+-.+...+.+.|++++|+..|.+. ...| +...+..+..+|...|++++|...++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445777888999999999999887 3344 6778888999999999999999999999998876654 555667
Q ss_pred HHHHHcCCchhHHHHHHHHHh
Q 017414 286 NIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+...+++++|.+.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999877643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00042 Score=54.96 Aligned_cols=112 Identities=9% Similarity=-0.114 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYL 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 228 (372)
...+...+...... .+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..++
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccch
Confidence 44445555444432 233344444444432 34455566666665532 244444445544443 4567
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCC
Q 017414 229 QEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEP 275 (372)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 275 (372)
++|...|++....-++..+..|...|.. ..+.+.|.+.|+++.+.+.
T Consensus 199 ~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7777777766212244555555555543 2367777777777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.22 E-value=3.3e-05 Score=57.07 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..|..+..++...|++++|+..++.+++++|.+..+|..++.++...|++++|...|++....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667788999999999999999999999999999999999999999999999999988654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.9e-07 Score=82.61 Aligned_cols=221 Identities=10% Similarity=-0.033 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 58 EAITLFRRMQVENVKPDE-IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
+|.+.|++..+ ++|+. ..+..+..++...+++++| +++++... |+ ...++...... + ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 57777777776 34543 3445555666666666654 56655432 22 11111111111 1 113445555554
Q ss_pred cccC----CcchHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 136 MKNK----SVITWTTM--IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 136 ~~~~----~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
..+. +....... .......+.++.|+..+....... .++...+..+...+.+.|+.+.|...+.....- .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C
Confidence 4321 11111111 111223444555555544433321 233455666666777777887777777665531 1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
...++..+...+...|++++|...|++. .+.| +...|+.|...+...|+..+|...|.+++...|+.+.++..|...
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1245666777788888888888888777 4445 456778888888888888888888888888777777788888777
Q ss_pred HHHcC
Q 017414 288 YAILG 292 (372)
Q Consensus 288 ~~~~g 292 (372)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.20 E-value=8.3e-06 Score=60.96 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH-----hCCCccCC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMP 313 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 313 (372)
..+..+..++...|++++|...++++.+.+|.+...|..++.+|...|++.+|++.|+++. +.|+.|.+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 4577788899999999999999999999999999999999999999999999999999984 35777643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=1.1e-05 Score=59.71 Aligned_cols=92 Identities=8% Similarity=-0.052 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCC
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE-------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 72 (372)
+......+.+.|++++|+..|.+..+ .....|..+..++.+.|++++|+..+.+.++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 34455566677777777777765432 012234445555555555555555555555532 2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
.+..+|..+..++.+.|++++|...|+.+.+.
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.7e-05 Score=55.61 Aligned_cols=88 Identities=7% Similarity=0.029 Sum_probs=40.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---Cc-------chHHHHHHHH
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SV-------ITWTTMIAGL 151 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-------~~~~~l~~~~ 151 (372)
...+.+.|++++|...|++.++.+ |.+..++..+..+|.+.|++++|+..+++..+. +. .+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444432 233444444444444444444444444443320 11 1334455555
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 017414 152 ALHGLGREALDMFSRMERA 170 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~ 170 (372)
...+++++|++.|++....
T Consensus 90 ~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 5666666666666665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0011 Score=54.16 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=149.1
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
+|..--..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|..+..+. .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 5666667788889999999999999987643 567888889999999987776543 2566888888
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 197 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 197 (372)
..+.+.....-|.-+ ......+......++..|-..|.+++...+++..... -.++...++.++..|++.+ .++..+
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence 888888776655332 2222234455567889999999999999999987644 3556778888888888865 344444
Q ss_pred HHHHhHHhcCCCcC--------HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 198 YFNIMKSRYGIEPK--------IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 198 ~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
.++.... .+.+. ...|.-++-.|.+.|.+++|..++-.- .++..-...++..+.+..+.+...++...
T Consensus 154 ~l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 154 HLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 4444321 12111 111334455555555555555544332 23444456677778888898888888887
Q ss_pred HHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 270 LIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 270 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
.++..| .....|+......-+..+..+.+++
T Consensus 230 yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 230 YLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHcCH---HHHHHHHHHhccCCCHHHHHHHHHh
Confidence 777554 4566777777777777666666653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=3.9e-07 Score=80.62 Aligned_cols=259 Identities=9% Similarity=-0.074 Sum_probs=141.7
Q ss_pred HHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHH
Q 017414 27 NARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 27 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
+|.+.|++..+ |+ ..++..+..++...|++++| |++++.. .|+.. .++.....+ + ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-N-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-H-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-H-HHHHHHHHHHHHhc
Confidence 46666766653 33 45677778888888888776 7777653 34321 121111111 1 12455666777666
Q ss_pred HcCCCCchhHHHH--HHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 017414 103 QYGLNTIVPLNNA--LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI 177 (372)
Q Consensus 103 ~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 177 (372)
+....++..-... +...+...+.++.|+..+.+..+ ++...+..+...+.+.|+.++|...+....... | ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH--H-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HH
Confidence 5443343322222 12223345667777777765543 355678888899999999999999888766532 2 35
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASN 255 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~ 255 (372)
++..+...+...|++++|...|+++.+- .+.+...|+.|...+...|+..+|...|.+. -..|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6777889999999999999999999953 2445689999999999999999999999887 33467778888887776
Q ss_pred HcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 256 IYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
+..+..++. +..+... ..+..+...+...+.++...++.+++
T Consensus 232 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 543321110 0011111 23444444555667777666655444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=1.1e-05 Score=57.98 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
.+++|.+.|+++++++|.+...+..|... .+|.+++.+..+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 36889999999999999887655555444 466777777766664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=4.8e-05 Score=50.03 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC----C----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM----P----FEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~----~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+...+..+...+.+.|++++|...|++. + ..++ ..++..+..++.+.|++++|...++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 3444556777888888888888887765 1 1122 45788899999999999999999999999999999888
Q ss_pred HHHHH
Q 017414 282 AILSN 286 (372)
Q Consensus 282 ~~l~~ 286 (372)
..+..
T Consensus 84 ~Nl~~ 88 (95)
T d1tjca_ 84 GNLKY 88 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.85 E-value=6.1e-05 Score=54.76 Aligned_cols=93 Identities=16% Similarity=-0.035 Sum_probs=67.2
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHhhC----CCCCC----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC-
Q 017414 214 QYGCM--IDLLGRAGYLQEAEKLLRRM----PFEAN----------AAIWGSLLAASNIYGDVELGECALQHLIKLEPH- 276 (372)
Q Consensus 214 ~~~~l--i~~~~~~g~~~~a~~~~~~~----~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 276 (372)
+|..+ ...+...|++++|+..|++. +..|+ ...|+.+..+|...|++++|...+++++++.|.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44555667777777777765 22222 356777888899999999999999888874321
Q ss_pred ----------CcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 277 ----------NSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 277 ----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
...++..++.+|...|++++|...|++...
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123578889999999999999999998754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.0002 Score=53.16 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH----hcCCCcCHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQ 214 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 214 (372)
...+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+++.. +.|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456667777777777777777777777763 34667777777777777777777777777643 3477777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.83 E-value=4.9e-05 Score=60.47 Aligned_cols=127 Identities=12% Similarity=-0.028 Sum_probs=88.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 229 (372)
..+.|++++|+..+++.++.. +-+...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346789999999999988874 446778888899999999999999999998843 444 455555555555555555
Q ss_pred HHHHHHhhC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 230 EAEKLLRRM--PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 230 ~a~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 544333222 12232 23344445567788999999999999999888776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=9.3e-05 Score=58.80 Aligned_cols=119 Identities=9% Similarity=-0.065 Sum_probs=72.9
Q ss_pred HHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 017414 50 YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129 (372)
Q Consensus 50 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 129 (372)
..+.|++++|+..+++.++.. +-+...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 456788888888888888763 4466777788888888888888888888887764 33344555455554444444333
Q ss_pred HHHHHhcc---cC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 130 LQVFENMK---NK-SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 130 ~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..-...-. .| +...+......+.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22222111 11 1123333445566677777777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=2.7e-05 Score=55.94 Aligned_cols=95 Identities=8% Similarity=0.033 Sum_probs=61.0
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
+.+.+++|...|+.+.+. -|.++..+..+..+|...+++..+.+ ..+.+++|+..+
T Consensus 9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~~ 64 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHHH
Confidence 344555555555555532 13344455555555544433332222 224457899999
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCC-----------chhHHHHHHHHHh
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGR-----------WNESGKIRKVMRD 306 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 306 (372)
+++++++|.++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 99999999999999999999987654 5777777777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=0.0004 Score=50.22 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
..|+.+..+|...|++++|...+++. ...++ ...+..+..+|...|++++|...|+++.++.|
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45566666777777777766665554 11222 22456677889999999999999999988654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00045 Score=45.09 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-------cchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+...+..+...+.+.|+++.|...++++.++.|.+ ..++..|+.++.+.|++++|.+.+++....
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34456678889999999999999999999865432 347889999999999999999999998654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.055 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 017414 117 IDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~ 137 (372)
+......|+...|..+...+.
T Consensus 161 ~~~~l~~~~~~~a~~l~~~l~ 181 (450)
T d1qsaa1 161 IRLAMKAGNTGLVTVLAGQMP 181 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHcCChhhHHHHHhhCC
Confidence 344444555555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.51 E-value=0.054 Score=36.16 Aligned_cols=141 Identities=10% Similarity=0.044 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.-.|..++..+++.+..... +..-|+-++.-....-+-+...++++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 455778888888888777642 44556666655555566666777777766533322 3444555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
....+-.++ .+...+...+.....+|+-+...++++.+.+.+..+|.....++.+|.+.|...++.+++.+.-+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555543 344556666777888899999999999888877667888888999999999999999999999888875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.043 Score=36.83 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCCC-CH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 210 PKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA-NA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~-~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
+++.+--....++.+.. +.++++.+++++ ...| +. ..+..|.-+|.+.|++++|.+.++.+++++|.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 34444444444444433 234555555555 1123 22 33444455566666666666666666666665543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.03 E-value=0.068 Score=36.61 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=8.8
Q ss_pred CccHHHHHHHHHHhCC
Q 017414 55 QPNEAITLFRRMQVEN 70 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~ 70 (372)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455566666555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.88 E-value=0.12 Score=34.37 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=50.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
...+.-++.+..+|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++.+++.++.++ |++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 34556677788888888888888887764 3677778888888999999999999998888865 653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.78 E-value=0.092 Score=35.89 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH----cCCchhHHHHHHHHHhCCC
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 309 (372)
+.++|.+.|++..+.+ ++.....|+..|.. ..+.++|.++|++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4455566666555543 23345555555554 3455666666666555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.21 Score=33.32 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhCCCCc-chHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 261 ELGECALQHLIKLEPHNS-GNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
++|+.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444332 23444444455555555555544444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.08 E-value=0.31 Score=30.68 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 55667777888888889999999999999999999999999999999876543 3445665553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=3 Score=34.72 Aligned_cols=145 Identities=13% Similarity=-0.002 Sum_probs=74.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
.+..+.+...+......+ .+.......+......+++..+...+..+.. .......-..-+.+++...|+.++|..
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~--~~~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM--EAKEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--TGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCc--ccccHHHHHHHHHHHHHHcCChhhHHH
Confidence 344555555555544432 2233333333334455666666666666653 212233334455666667777777766
Q ss_pred HHhhC---------------CCC-----------CC-HHH---HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 234 LLRRM---------------PFE-----------AN-AAI---WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 234 ~~~~~---------------~~~-----------~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
.|..+ +.. +. ... -..-+..+...|....|...+..+.... ++.-...
T Consensus 341 ~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~ 418 (450)
T d1qsaa1 341 ILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQ 418 (450)
T ss_dssp HHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHH
Confidence 66654 000 00 000 0112344556677777777766665422 3445556
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
++....+.|.++.|+......
T Consensus 419 la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 666677777777776655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.45 E-value=0.78 Score=28.80 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++... .++...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 455666666667788888888888888888888888888888877542 33455565444
|