Citrus Sinensis ID: 017437
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 371 | ||||||
| 225424464 | 381 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.944 | 0.634 | 1e-131 | |
| 225424462 | 401 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.897 | 0.602 | 1e-129 | |
| 255573244 | 397 | oxidoreductase, putative [Ricinus commun | 0.973 | 0.909 | 0.600 | 1e-127 | |
| 356525042 | 374 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.967 | 0.596 | 1e-122 | |
| 356525040 | 394 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.918 | 0.566 | 1e-120 | |
| 297737583 | 370 | unnamed protein product [Vitis vinifera] | 0.886 | 0.889 | 0.565 | 1e-116 | |
| 145326686 | 369 | 2-oxoglutarate (2OG) and Fe(II)-dependen | 0.938 | 0.943 | 0.586 | 1e-111 | |
| 297841517 | 389 | oxidoreductase [Arabidopsis lyrata subsp | 0.938 | 0.894 | 0.556 | 1e-109 | |
| 79375455 | 389 | 2-oxoglutarate (2OG) and Fe(II)-dependen | 0.938 | 0.894 | 0.556 | 1e-108 | |
| 449481306 | 396 | PREDICTED: uncharacterized LOC101218213 | 0.975 | 0.914 | 0.535 | 1e-108 |
| >gi|225424464|ref|XP_002285154.1| PREDICTED: uncharacterized protein LOC100256078 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/380 (63%), Positives = 280/380 (73%), Gaps = 20/380 (5%)
Query: 7 ESERRRVIVRNILSKEECEELELIHKSCSTVGYRPNVFSTTLSHLIATNSSHFIVPFVPI 66
+S RVI++N +S EEC+ELE IHKSC TVGYRPNVFSTTLSHLIAT S H I+PFVPI
Sbjct: 3 DSRHPRVILKNFVSVEECKELEFIHKSCCTVGYRPNVFSTTLSHLIATRSPHLILPFVPI 62
Query: 67 RERLKEKVEEFFGCEFELVIEFTGLISWARGASIGWHCDDNRPYLKQRHFT--------- 117
RERLKEK+EE FGCE+EL IEFTGLISW RGASIGWH DDNRPYLKQR F
Sbjct: 63 RERLKEKLEECFGCEYELFIEFTGLISWTRGASIGWHSDDNRPYLKQRDFADGDPTTIEP 122
Query: 118 ---DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKV 174
DV MYTAD RN+HSVDE+T GERLTLTLWFSRD SHDEDAKL+ +LSQ LH S+
Sbjct: 123 LAGDVVMYTADCRNIHSVDEITDGERLTLTLWFSRDCSHDEDAKLVCLLSQSQLHSSNNE 182
Query: 175 PQLCLPLPASSNMYWFSPNQASPDELGCNICWARMDVLGYDIYYSQNTS------SALDC 228
P LPLPASS+MYWFSP+ S + G +ICWARM +LGYD++ Q+ S S+ D
Sbjct: 183 PDPYLPLPASSSMYWFSPDHISQHQSGFDICWARMHILGYDLFSPQDKSCFSALDSSCDF 242
Query: 229 SELLLEPLQLARGDNLFHQPFANILHALQVVQFFHWKASEFPTSKFETEASK-VLHLSQS 287
SE L+E LQLARGD LF F NILH LQVVQF+ WKAS+ TSK E E V+ LS+S
Sbjct: 243 SERLMEQLQLARGDELFDLEFVNILHVLQVVQFYSWKASKLQTSKVERETENLVVKLSES 302
Query: 288 QKENISNLKSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLL 347
Q+E I+NL++ F+ + QLAETV E Q SF W +FSAAV AWEDY R+L K+L+
Sbjct: 303 QREKINNLRTTFLNDQQLAETVL-GTSCGESRQHSFQWVSFSAAVGAWEDYTRELRKELV 361
Query: 348 NSLPHWRTHQSIFSCPLDES 367
SLP+WRTHQ+IFS P D S
Sbjct: 362 LSLPYWRTHQAIFSVPFDGS 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424462|ref|XP_002285151.1| PREDICTED: uncharacterized protein LOC100256078 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255573244|ref|XP_002527551.1| oxidoreductase, putative [Ricinus communis] gi|223533101|gb|EEF34860.1| oxidoreductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356525042|ref|XP_003531136.1| PREDICTED: uncharacterized protein LOC100788718 isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356525040|ref|XP_003531135.1| PREDICTED: uncharacterized protein LOC100788718 isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297737583|emb|CBI26784.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|145326686|ref|NP_001077790.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana] gi|71905463|gb|AAZ52709.1| expressed protein [Arabidopsis thaliana] gi|332196625|gb|AEE34746.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297841517|ref|XP_002888640.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297334481|gb|EFH64899.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|79375455|ref|NP_176975.2| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana] gi|56236062|gb|AAV84487.1| At1g68080 [Arabidopsis thaliana] gi|58531340|gb|AAW78592.1| At1g68080 [Arabidopsis thaliana] gi|60547659|gb|AAX23793.1| hypothetical protein At1g68080 [Arabidopsis thaliana] gi|71905461|gb|AAZ52708.1| expressed protein [Arabidopsis thaliana] gi|332196623|gb|AEE34744.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449481306|ref|XP_004156144.1| PREDICTED: uncharacterized LOC101218213 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 371 | ||||||
| TAIR|locus:2200291 | 389 | AT1G68080 [Arabidopsis thalian | 0.652 | 0.622 | 0.528 | 1.7e-109 |
| TAIR|locus:2200291 AT1G68080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 132/250 (52%), Positives = 167/250 (66%)
Query: 118 DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKVPQL 177
DV MYTAD RN+HSVDEVT GERLTL LWFSRDSSHDED+KL+S LSQ H ++
Sbjct: 146 DVIMYTADDRNIHSVDEVTDGERLTLALWFSRDSSHDEDSKLLSRLSQCTSH------EV 199
Query: 178 CLPLPASSNMYWFSPNQ-ASPDELGCNICWARMDVLGYDIYYSQNTSSALDCSELLLEPL 236
CLPLPAS+NMYWF P+Q S +G ++C AR+ +LG+D++ Q + D SE L+ PL
Sbjct: 200 CLPLPASTNMYWFCPHQDGSNQNIGFDVCVARLHLLGFDVHSLQGEDHSTDASEQLMGPL 259
Query: 237 QLARGDNLFHQPFANILHALQVVQFFHWKASEFPTSKFETEA-SKVLHLSQSQKENISNL 295
QLA+G L + FANILHALQVVQF+HWKASE TS E + +V +S SQ E I+ L
Sbjct: 260 QLAKGGKLLTRKFANILHALQVVQFYHWKASELVTSNVENDTLEEVKAMSHSQLETINAL 319
Query: 296 KSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLLNSLPHWRT 355
KSVF+ + L T F E + S + AVT+WE+Y KL K+LL+SLP W+T
Sbjct: 320 KSVFLLDENLVATTFGYSCSGEDRKDSLDLTGIALAVTSWEEYSCKLLKELLSSLPQWKT 379
Query: 356 HQSIFSCPLD 365
+Q+I D
Sbjct: 380 YQTIHKVESD 389
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00030642001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (381 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 371 | |||
| KOG4459 | 471 | consensus Membrane-associated proteoglycan Lepreca | 99.87 | |
| KOG4459 | 471 | consensus Membrane-associated proteoglycan Lepreca | 99.83 | |
| smart00702 | 178 | P4Hc Prolyl 4-hydroxylase alpha subunit homologues | 98.97 | |
| PRK05467 | 226 | Fe(II)-dependent oxygenase superfamily protein; Pr | 98.37 | |
| PF13640 | 100 | 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; | 96.77 | |
| COG3128 | 229 | PiuC Uncharacterized iron-regulated protein [Funct | 95.21 | |
| PLN00052 | 310 | prolyl 4-hydroxylase; Provisional | 91.62 | |
| KOG3710 | 280 | consensus EGL-Nine (EGLN) protein [Signal transduc | 90.26 |
| >KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-25 Score=225.38 Aligned_cols=269 Identities=22% Similarity=0.129 Sum_probs=234.8
Q ss_pred CCCcceeeeeccccccCcCCccccccCCcccccccccc------------------------ceeeeccC--------CC
Q 017437 80 CEFELVIEFTGLISWARGASIGWHCDDNRPYLKQRHFT------------------------DVAMYTAD--------SR 127 (371)
Q Consensus 80 L~~~LyfSfTHLVcwCRsASh~VHaDN~~P~~~~RDYS------------------------RlVgFSSG--------~E 127 (371)
..+..++.+++...||++...++|.+.+.|+.++|+.. =+|+-+.| --
T Consensus 97 a~fg~~le~a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyY 176 (471)
T KOG4459|consen 97 AIFGHLLERAACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYY 176 (471)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHH
Confidence 44567888888888999999999999888888877744 33333333 33
Q ss_pred c---ccccccccccceeeEEEecccCCCchhHHHHHHHhhhhhcccCCCCCCccCCCCCCCCccccC-CC-CCCCCCCcc
Q 017437 128 N---VHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKVPQLCLPLPASSNMYWFS-PN-QASPDELGC 202 (371)
Q Consensus 128 N---pHGVkAVTkGqRCAlALWFTlDp~H~E~erll~~l~~~~~~~~~~~p~~~lp~pas~~myw~~-~~-~~s~~~~g~ 202 (371)
+ .|.+..+|.++|=....||.++.++ ...+.++++ ||..++++|.|.+|||++ |- +.+.+++||
T Consensus 177 q~~l~~s~d~l~DlE~~~~~~~Fir~v~~----y~~~d~~~~-------v~~ve~AL~e~~~~~~~Cr~lceg~~e~i~f 245 (471)
T KOG4459|consen 177 QTMLGVSEDELTDLERREHEQWFIRGVRL----YSGEDPRQC-------VPEVELALPESFNMYEECRALCEGSYENIGF 245 (471)
T ss_pred HhccCCCcccccccccchHHHHHHHHhhh----ccccCchhc-------chhHHHHHHHHHHHHHHHHhhcCCccccccc
Confidence 4 7889999999999999999999887 222222332 356789999999999999 44 389999999
Q ss_pred eeeeeeeeeeeeEEEeecCCCCccChhhhhccceeeccCCccchhhhHhHHHHHhhheeeecccCCCCCccccccccc-h
Q 017437 203 NICWARMDVLGYDIYYSQNTSSALDCSELLLEPLQLARGDNLFHQPFANILHALQVVQFFHWKASEFPTSKFETEASK-V 281 (371)
Q Consensus 203 di~~ar~~~lg~~~~~~~~~~~~~d~~ell~~p~~l~r~~~l~~~~f~nilhalqvvqfy~wkas~l~~~~~~~~~~~-v 281 (371)
|.+ +|++-++++|..-+.++..- .++.|++ ++...|+..+++.|+|+.| ++||+|||.|+ .|+..+..+.. +
T Consensus 246 ~~~-~~l~~~~~ai~d~~~e~~~C-~~~cl~~-L~p~~g~~~v~k~~as~y~---ylQFa~ykise-~tqA~~~~~syLl 318 (471)
T KOG4459|consen 246 DYN-EQLNDLYRAIADLYLEVLEC-KLNCLAK-LAPHTGGKTVLKFFASHYH---YLQFAYYKISE-VTQAAECAASYLL 318 (471)
T ss_pred hhh-hhcchHHHHHHHhcccHHHH-HHHHHhc-cCcCCCCCcHHHHHHHHHH---HHHHHHhhHHH-HHHhhccccceee
Confidence 999 99999999999999998888 8899999 9999999999999999999 99999999999 66667777666 9
Q ss_pred hccchhhHhhhhcccceeeccccchhhhccccccccccccccccchhhHHHhhHHHHHHHHHHHHHhccCcceeeceeee
Q 017437 282 LHLSQSQKENISNLKSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLLNSLPHWRTHQSIFS 361 (371)
Q Consensus 282 ~~~s~~q~e~i~~l~s~~l~d~~~~~~~f~~~~~~~~~~~~f~w~~~~~av~~we~y~~~l~k~l~~~lp~wr~~~~i~~ 361 (371)
..+|+++.+++...++++++|+++..+-|++.|+.+...+.-.-..+..+++-|+.|.++.-++|....|.|.|.++|.+
T Consensus 319 f~~sh~v~r~~l~y~q~~r~d~~l~a~~~~~d~ea~e~~~~~~~~~~~~~~a~~~~~dd~~~~el~~t~~d~~t~~a~~k 398 (471)
T KOG4459|consen 319 FDPSHSVMRQNLAYYQVHRLDHELHADNFGPDPEAEECWNEPPLYTELDYFALLYLNDDFEGGELLFTEPDAKTYTAISK 398 (471)
T ss_pred eCCcHHHHHHHHHHHHHHhccccchhhhcCcCchHHHHhccchHHHHHHhhccHhhcCccccccceecCCcccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 017437 362 CPLDE 366 (371)
Q Consensus 362 v~~~~ 366 (371)
+.++-
T Consensus 399 ~~~~r 403 (471)
T KOG4459|consen 399 PECGR 403 (471)
T ss_pred ccccc
Confidence 87753
|
|
| >KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown] | Back alignment and domain information |
|---|
| >smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues | Back alignment and domain information |
|---|
| >PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional | Back alignment and domain information |
|---|
| >PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A | Back alignment and domain information |
|---|
| >COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN00052 prolyl 4-hydroxylase; Provisional | Back alignment and domain information |
|---|
| >KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 371 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 62/363 (17%), Positives = 115/363 (31%), Gaps = 111/363 (30%)
Query: 16 RNILSKEECEELELIHKSCSTVGYRPNVFSTTLSHLIATNSSHFIVPFVPIRERLKEKVE 75
++ILSKEE + I S + S TL + F + + +E V+
Sbjct: 43 KSILSKEEIDH---IIMS-------KDAVSGTL----------RL--FWTLLSKQEEMVQ 80
Query: 76 EFFGCEFELVIEFTGLISWARGASIGWHCDDNRP------YLKQRH--FTDVAMYTADSR 127
+F + +F + + +P Y++QR + D ++
Sbjct: 81 KFVEEVLRINYKFL----MSP-----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KY 129
Query: 128 NVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLI---------SILSQKLLHRSDKVPQLC 178
NV + L L ++ + ++ + S KV Q
Sbjct: 130 NVSRLQPY-----LKLRQALLELRPAK---NVLIDGVLGSGKTWVALDVC-LSYKV-QCK 179
Query: 179 LPLPASSNMYWFS-PNQASPDELGCNICWARMDVLGYDIYYSQNTSSALDCSE---LLLE 234
+ ++W + N SP+ + + L Y I N +S D S L +
Sbjct: 180 MD----FKIFWLNLKNCNSPETV-----LEMLQKLLYQI--DPNWTSRSDHSSNIKLRIH 228
Query: 235 PLQLARGDNLFHQPFANILHALQVVQ-FFHWKASEFPTSKFETEASKVLHLSQSQKENIS 293
+Q L +P+ N L L VQ W A F K+L ++
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLS-CKILLTTRF------ 274
Query: 294 NLKSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLLN----S 349
K V + L+ + + + + + D ++ L + L+
Sbjct: 275 --KQVT---DFLSAATTTHISL-DHHSMTLT-----------PDEVKSLLLKYLDCRPQD 317
Query: 350 LPH 352
LP
Sbjct: 318 LPR 320
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 371 | |||
| 2hbt_A | 247 | EGL nine homolog 1; prolyl hydroxylase, hypoxia in | 98.99 | |
| 3dkq_A | 243 | PKHD-type hydroxylase SBAL_3634; putative oxygenas | 98.6 | |
| 3itq_A | 216 | Prolyl 4-hydroxylase, alpha subunit domain protei; | 97.8 | |
| 2jig_A | 224 | Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { | 97.74 | |
| 3kt7_A | 633 | PKHD-type hydroxylase TPA1; double-stranded beta h | 92.04 |
| >2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=101.91 Aligned_cols=153 Identities=15% Similarity=0.231 Sum_probs=86.9
Q ss_pred CCceEEecCccCHHHHHHHHHHHhhhccCC-CCCCCC---CCc-ccceee------cCC-Cc--cccccccchhHHHHHH
Q 017437 9 ERRRVIVRNILSKEECEELELIHKSCSTVG-YRPNVF---STT-LSHLIA------TNS-SH--FIVPFVPIRERLKEKV 74 (371)
Q Consensus 9 ~sqRVVlDGvlS~eEC~eL~~La~aaataG-YRp~t~---~~t-~~~l~a------~ga-~~--~lvp~~~vsEkvR~~v 74 (371)
+..++|+|+|||++||+.|...+......| |++... ... ...... .+. +. .+..|++.-++++..+
T Consensus 25 ~~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~l 104 (247)
T 2hbt_A 25 KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHC 104 (247)
T ss_dssp HTSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEECCSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccccccccccccccceeeecccccchhHHHHHHHHHHHHHHHH
Confidence 357899999999999999999988643333 442210 010 011100 000 00 0001233333443333
Q ss_pred HhhccCCCccee----eeecccccc-CcCCccccccCCcc---------cccc---------------cc--c--c----
Q 017437 75 EEFFGCEFELVI----EFTGLISWA-RGASIGWHCDDNRP---------YLKQ---------------RH--F--T---- 117 (371)
Q Consensus 75 EsYF~L~~~Lyf----SfTHLVcwC-RsASh~VHaDN~~P---------~~~~---------------RD--Y--S---- 117 (371)
... ..+|. +..|+.|.- .+....+|.|+.+. |++. .+ . +
T Consensus 105 n~~----lGl~~i~~~~e~~~~~Y~~~G~~y~~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~~~~~~v~P~ 180 (247)
T 2hbt_A 105 NGK----LGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPK 180 (247)
T ss_dssp TTT----STTCCEEEECCEEEEEECSSSCCEEEECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTCSSCEEECCB
T ss_pred hhh----cCcccccccceEEEEEecCCCCcccccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCCCceEEEEcC
Confidence 222 24552 457888433 37778899998420 1221 11 1 1
Q ss_pred --ceeeeccCCCcccccccccccceeeEEEecccCCCchhHHHHHHHhhhhh
Q 017437 118 --DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKL 167 (371)
Q Consensus 118 --RlVgFSSG~ENpHGVkAVTkGqRCAlALWFTlDp~H~E~erll~~l~~~~ 167 (371)
|||.|.|+.+++|+|.+ +.|.|++|+.||+.++...+ .+.-..+++..
T Consensus 181 ~grlv~F~s~~~~~H~V~p-~~~~R~sit~W~~~~~~~~~-a~~~~~~~~~~ 230 (247)
T 2hbt_A 181 FDRLLFFWSDRRNPHEVQP-AYATRYAITVWYFDADERAR-AKVKYLTGEKG 230 (247)
T ss_dssp TTEEEEEECSTTCCEEECC-BSSCEEEEEEEEEEHHHHHH-HHHHCC---CC
T ss_pred CCEEEEEecCCCceeeecc-CCCEEEEEEEEEcCCchhhh-hhhhccccccc
Confidence 99999999889999999 67999999999998776544 33323334443
|
| >3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} | Back alignment and structure |
|---|
| >3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} | Back alignment and structure |
|---|
| >2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A | Back alignment and structure |
|---|
| >3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 371 | |||
| d2a1xa1 | 296 | Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie | 89.52 |
| >d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: PhyH-like domain: Phytanoyl-CoA dioxygenase, PhyH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.72 Score=38.17 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=25.0
Q ss_pred chhHHHHHHHhhccCCCcceeeeeccccccC-----cCCccccccC
Q 017437 66 IRERLKEKVEEFFGCEFELVIEFTGLISWAR-----GASIGWHCDD 106 (371)
Q Consensus 66 vsEkvR~~vEsYF~L~~~LyfSfTHLVcwCR-----sASh~VHaDN 106 (371)
..+++..+++..++. .+.+..+++++.-. +..++||.|.
T Consensus 93 ~~~~i~~~~~~llg~--~~~~~~~~~~~k~p~~~~~~~~~~wHqD~ 136 (296)
T d2a1xa1 93 TLPEILKYVECFTGP--NIMAMHTMLINKPPDSGKKTSRHPLHQDL 136 (296)
T ss_dssp HCHHHHHHHHHHHCS--SEEEEEEEEEEECCC--------CCBCGG
T ss_pred ccHHHHHHHHHhhcc--ccceecccccccccccccccccCCcccCc
Confidence 457889999999974 46666777773211 2357899984
|