Citrus Sinensis ID: 017442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKRKQTYQNEC
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccEEEEEcccHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEEccccEEcccHHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccEEEcHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEccccEEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEcccccEEEcccccEEEEEcccHHHHcccccccccEEEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHEEEcccccccccHHHccccHHHHccccHHHHHHHHHHHHccccHHHcccccccEEEEEEEcHHHHHcHHHHHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEccccEEEEEHHHHHHccccHHHHcHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mftdftnggaheniiwpdlpyvtdehgniyIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAglseidfgideiddedsdvedededededeededydenwvnvlededdedemlgDWAKLEtmrsshpmyFAKKLSevisddpidwmeqppagitiqgllrpalieehsdiqrhrssnqyhdvdnsknvvvgnnqedlhvinghrnesepsrngseeskkddkpmngtsfyKLEMTKIQPILAHAHQAAVDIEdyrkaqpdvIAHSAANIISRLKAGGEKTTQALKSLCWrtkgiqveeeAVIGVDSIGFDLRVCAGTQIQTLRFAfntratseysAERQLNdllfprihqkpqkrkqtyqnec
Flexible Loop (DISEMBL)
mftdftnggaheniiwpdlpyVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEdededededeededydenwvnvlededdedEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHrssnqyhdvdnsknvvVGNNQEDLhvinghrnesepsrngseeskkddkpmNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNdllfprihqkpqkrkqtyqnec
Low Complexity Region (SEG)
MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSeidfgideiddedsdvedededededeededydeNWVNVLededdedeMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKRKQTYQNEC
Disordered region (IsUnstruct)
*******GGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGI**********************************************W**********PMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI****************************************************************FYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA**QLNDLLF******************
Disordered Region (DISOPRED)
*FTD***GGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKE**********F***EIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQ******************VGNNQEDLHV***********************PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDL********************
Disordered Region (DISEMBL)
MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDD*********************DENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHR******************PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQ*************
Disordered Region (DISPRO)
*FTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGID*********************DEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSN*Y********************************************MNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPR****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKRKQTYQNEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q0WMN5	499	Uncharacterized protein A	no	no	0.932	0.693	0.492	2e-95

>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/380 (49%), Positives = 263/380 (69%), Gaps = 34/380 (8%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           M T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+ SENN+VQVI+GFDT E
Sbjct: 135 MLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSVTSENNYVQVIVGFDTME 194

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEM 120
           MIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ +E WV +LEDED++D+ 
Sbjct: 195 MIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDEDEEEWVAILEDEDEDDDD 246

Query: 121 ----------------LGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQ 164
                           LGDWA LETMRS HPM+FAK+++EV S+DP+DWM+QP AG+ IQ
Sbjct: 247 DDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVASNDPVDWMDQPSAGLAIQ 306

Query: 165 GLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSE- 223
           GLL   L+E++SDIQ+  + +         N     N++  ++++   + S+   + SE 
Sbjct: 307 GLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENLVDKLEDNSKAGGDESEI 357

Query: 224 ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 283
           +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQPD IAH++A IISRL+ 
Sbjct: 358 DSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQPDAIAHASAEIISRLEE 417

Query: 284 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYS 343
            G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +I++LRFAF+TRATSE +
Sbjct: 418 SGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAKIESLRFAFSTRATSEEN 477

Query: 344 AERQLNDLLFPRIHQKPQKR 363
           AE Q+  LLFP+ +Q  Q +
Sbjct: 478 AEGQIRKLLFPKTNQSTQPK 497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.132    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,196,876
Number of Sequences: 539616
Number of extensions: 6915182
Number of successful extensions: 119886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 721
Number of HSP's that attempted gapping in prelim test: 64634
Number of HSP's gapped (non-prelim): 25892
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
359490595	511	PREDICTED: uncharacterized protein At3g4	0.956	0.694	0.668	1e-126
302143770	506	unnamed protein product [Vitis vinifera]	0.956	0.701	0.668	1e-126
356529119	474	PREDICTED: uncharacterized protein At3g4	0.994	0.778	0.625	1e-125
356561498	466	PREDICTED: uncharacterized protein At3g4	0.994	0.791	0.615	1e-121
357498255	524	hypothetical protein MTR_6g052360 [Medic	0.991	0.702	0.611	1e-118
255545156	461	conserved hypothetical protein [Ricinus	0.948	0.763	0.624	1e-111
449445979	513	PREDICTED: uncharacterized protein LOC10	0.951	0.688	0.587	1e-110
145358369	481	pentatricopeptide repeat-containing prot	0.938	0.723	0.527	1e-104
334187889	494	pentatricopeptide repeat-containing prot	0.938	0.704	0.527	1e-104
9758230	464	unnamed protein product [Arabidopsis tha	0.938	0.75	0.527	1e-104

>gi|359490595|ref|XP_002274287.2| PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/368 (66%), Positives = 292/368 (79%), Gaps = 13/368 (3%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           MF++  N   HENI WP+LPYVTDEHGNIY QV N+EDI+QSL SENNFVQVIIG DT+E
Sbjct: 132 MFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSENNFVQVIIGLDTSE 191

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN--WVNVLEDEDDED 118
           M+ EMEL G +EIDFGI+EI+DEDSD++ ED++ D+D++D+D D+   WV +LEDE+D++
Sbjct: 192 MLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQDWVAILEDEEDQE 251

Query: 119 E---MLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEH 175
           +    +GDWAKLETMRSSHPM+FAK ++EV S DP+DWM QPPAGI IQGLLRPA IEE 
Sbjct: 252 DSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIAIQGLLRPAFIEEQ 311

Query: 176 SDIQRHRSSNQYHDVDNSKNVVVGNNQ---EDLHVINGHRNESEPSRNGS---EESKKDD 229
           S IQ+H SS+Q  + +   N V  N++   EDL  INGH  ES  SR+ S   E+ +KD 
Sbjct: 312 SVIQKHISSHQSSNAN--VNQVEKNSEDKAEDLEKINGHGQESGSSRDNSIQAEDIEKDH 369

Query: 230 KPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTT 289
             MNG SFYKLEM KI  I AH  QA VD+ED+R AQPD IAHSA+ IISRLKAGGEKTT
Sbjct: 370 NMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASKIISRLKAGGEKTT 429

Query: 290 QALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLN 349
           QALKSLCWR KGIQVEE  +I VD++GFDLRVC+G Q+QTLRF FNTRATSEYSAERQLN
Sbjct: 430 QALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNTRATSEYSAERQLN 489

Query: 350 DLLFPRIH 357
           DLLFPRIH
Sbjct: 490 DLLFPRIH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143770|emb|CBI22631.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/368 (66%), Positives = 292/368 (79%), Gaps = 13/368 (3%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           MF++  N   HENI WP+LPYVTDEHGNIY QV N+EDI+QSL SENNFVQVIIG DT+E
Sbjct: 127 MFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSENNFVQVIIGLDTSE 186

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN--WVNVLEDEDDED 118
           M+ EMEL G +EIDFGI+EI+DEDSD++ ED++ D+D++D+D D+   WV +LEDE+D++
Sbjct: 187 MLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQDWVAILEDEEDQE 246

Query: 119 E---MLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEH 175
           +    +GDWAKLETMRSSHPM+FAK ++EV S DP+DWM QPPAGI IQGLLRPA IEE 
Sbjct: 247 DSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIAIQGLLRPAFIEEQ 306

Query: 176 SDIQRHRSSNQYHDVDNSKNVVVGNNQ---EDLHVINGHRNESEPSRNGS---EESKKDD 229
           S IQ+H SS+Q  + +   N V  N++   EDL  INGH  ES  SR+ S   E+ +KD 
Sbjct: 307 SVIQKHISSHQSSNAN--VNQVEKNSEDKAEDLEKINGHGQESGSSRDNSIQAEDIEKDH 364

Query: 230 KPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTT 289
             MNG SFYKLEM KI  I AH  QA VD+ED+R AQPD IAHSA+ IISRLKAGGEKTT
Sbjct: 365 NMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASKIISRLKAGGEKTT 424

Query: 290 QALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLN 349
           QALKSLCWR KGIQVEE  +I VD++GFDLRVC+G Q+QTLRF FNTRATSEYSAERQLN
Sbjct: 425 QALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNTRATSEYSAERQLN 484

Query: 350 DLLFPRIH 357
           DLLFPRIH
Sbjct: 485 DLLFPRIH 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529119|ref|XP_003533144.1| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/376 (62%), Positives = 294/376 (78%), Gaps = 7/376 (1%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           MF+   +   HENIIWPDLPY+TDEHGNIY QVKN EDILQSL SENNFVQVI+G ++ E
Sbjct: 101 MFSSLISDEFHENIIWPDLPYLTDEHGNIYFQVKNGEDILQSLTSENNFVQVIVGINSME 160

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVL-EDEDDEDE 119
           MI EM+L+G SEIDFGI+EID+ED++  D+ +++++++E+EDYD  WV V  +DE D+DE
Sbjct: 161 MISEMDLSGPSEIDFGIEEIDEEDTEDLDDSDEDEDEDENEDYDSEWVAVFSDDEQDDDE 220

Query: 120 MLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQ 179
            L DWAKLE+M+SSHPMYFAKKL+E+ SDDP+DWMEQPPA + IQG++RPA +EEHS IQ
Sbjct: 221 TLADWAKLESMQSSHPMYFAKKLAEIASDDPVDWMEQPPACVAIQGVIRPAFVEEHSTIQ 280

Query: 180 RHRSSNQYHDVDNSKNVVVGNNQEDLHVINGH-RNESEPSRNGSEESKKDDK---PMNGT 235
           +H S+NQ  D D S+++   +  E++ VINGH  N      N +++ + ++    P   T
Sbjct: 281 KHLSANQSSDTDKSRSI--ESKGENIGVINGHVLNSGSSGDNAAQQVENNENSVIPSCET 338

Query: 236 SFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSL 295
           SFYKLEM KIQ   A     A+++EDY  AQPD+IAHSA+ IISRLKA GEKT +ALKSL
Sbjct: 339 SFYKLEMIKIQVFSAQGQPTALELEDYMNAQPDIIAHSASKIISRLKADGEKTLEALKSL 398

Query: 296 CWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPR 355
           CWR KGIQVEE  +I +DS+GFD+RVC+GTQIQTLRF F  RATSEYSAERQLND+LFPR
Sbjct: 399 CWRCKGIQVEEAQLICLDSLGFDVRVCSGTQIQTLRFTFKKRATSEYSAERQLNDILFPR 458

Query: 356 IHQKPQKRKQTYQNEC 371
           IH K QK KQT+QNEC
Sbjct: 459 IHPKQQKMKQTHQNEC 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561498|ref|XP_003549018.1| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/380 (61%), Positives = 294/380 (77%), Gaps = 11/380 (2%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           MF+   +   HENIIWPDLPY+TDEHGNIY QVKN EDILQSL SENNFVQVI+G ++ E
Sbjct: 89  MFSSLISDEFHENIIWPDLPYLTDEHGNIYFQVKNGEDILQSLTSENNFVQVIVGINSME 148

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN--WVNVLEDEDDED 118
           MI EM+L+G SEIDFGI+EIDDED++  D++ ++++ +EDE+ D +  WV V  D+D+++
Sbjct: 149 MISEMDLSGPSEIDFGIEEIDDEDTEDVDDNNEDEDKDEDENEDYDSEWVAVFSDDDEQE 208

Query: 119 E---MLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEH 175
           +    L DWAKLETMRSSHP+YFAKKL+E+ SDDP+DWMEQPPA + IQG++RPA ++EH
Sbjct: 209 DDDETLADWAKLETMRSSHPVYFAKKLAEIASDDPVDWMEQPPACVAIQGVIRPAFVDEH 268

Query: 176 SDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDK----P 231
           S IQ+H S+NQ  D D SK++   +  E++ VINGH   SE S + + +  +++     P
Sbjct: 269 STIQKHLSANQSSDTDKSKSI--ESKGENIGVINGHVLNSESSGDNAAQQVENNGNSVIP 326

Query: 232 MNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQA 291
            + TSFYKL M KIQ   A     A+++EDY  AQPDVIAHSA+ IISRLKA GE+T +A
Sbjct: 327 FSETSFYKLVMIKIQVFSAQGQPTAIELEDYMNAQPDVIAHSASKIISRLKADGEETLEA 386

Query: 292 LKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDL 351
           LKSLCWR KGIQVEE  +I +DS+GFDLRVC+GTQIQTLRF F  RATSEYSAERQLND+
Sbjct: 387 LKSLCWRCKGIQVEEAQLICLDSLGFDLRVCSGTQIQTLRFTFKNRATSEYSAERQLNDI 446

Query: 352 LFPRIHQKPQKRKQTYQNEC 371
           LFPRIH K QK KQT+QNEC
Sbjct: 447 LFPRIHPKQQKMKQTHQNEC 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498255|ref|XP_003619416.1| hypothetical protein MTR_6g052360 [Medicago truncatula] gi|355494431|gb|AES75634.1| hypothetical protein MTR_6g052360 [Medicago truncatula]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/386 (61%), Positives = 285/386 (73%), Gaps = 18/386 (4%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           +F+ F N   H+NI+WPDLPY+TDEHGNIY Q K  EDILQSL SENNFVQVI+G DT E
Sbjct: 142 VFSTFVNDEYHDNIVWPDLPYLTDEHGNIYFQAKPGEDILQSLTSENNFVQVIVGVDTME 201

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDE-----DEDEDEEDEDYDENWVNVLE--- 112
           MI EM+L+G SEIDFGI+EIDDED+D  D+ +     +E+ED E+EDYD  W+ VL    
Sbjct: 202 MISEMDLSGPSEIDFGIEEIDDEDTDDLDDSDVEDDVNENED-ENEDYDSEWLAVLSDDD 260

Query: 113 -DEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPAL 171
             +DD+DE L DWAKLETMR SHPM FAKKL+E+ SDDPIDWMEQPPA +  QG++RPA 
Sbjct: 261 ELDDDDDEALADWAKLETMRFSHPMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAF 320

Query: 172 IEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGS----EESKK 227
           IEE+S IQ+H S+NQ    + SK  V  N +E +  INGH +  E S + +    E ++ 
Sbjct: 321 IEENSPIQKHLSANQSSTAEISK--VTENKEESVGAINGHEHNKESSEDNASQKVENNEN 378

Query: 228 DDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGG-- 285
            D P + TSFY+LE+ KIQ   AH H   +++EDY KAQPD IA S++ IIS LKA G  
Sbjct: 379 GDTPSDETSFYRLEIVKIQVFSAHGHPVVLEVEDYTKAQPDAIARSSSKIISHLKAAGES 438

Query: 286 EKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAE 345
           EKT QALKSLCW  KGIQVEE  +I VDS+GFD+RVC+GTQ+QTLRF F  RATSEYSAE
Sbjct: 439 EKTLQALKSLCWICKGIQVEEAQLICVDSLGFDVRVCSGTQVQTLRFGFKKRATSEYSAE 498

Query: 346 RQLNDLLFPRIHQKPQKRKQTYQNEC 371
           RQLND+LFPR H K QK KQT+QNEC
Sbjct: 499 RQLNDILFPRNHPKQQKTKQTHQNEC 524

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545156|ref|XP_002513639.1| conserved hypothetical protein [Ricinus communis] gi|223547547|gb|EEF49042.1| conserved hypothetical protein [Ricinus communis]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/365 (62%), Positives = 278/365 (76%), Gaps = 13/365 (3%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           M T   N   HENIIWPD+PYVTDE GNIY QVKN+EDILQ++ SENNFVQ IIGFDT E
Sbjct: 77  MLTGLINDDIHENIIWPDVPYVTDEQGNIYFQVKNDEDILQTISSENNFVQAIIGFDTME 136

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENW-VNVLEDEDDE-- 117
           M+ EMEL G SEIDFGI+ IDDEDSD+ED++++++++++ ++  ++  V VLEDED+E  
Sbjct: 137 MMTEMELLGPSEIDFGIEGIDDEDSDIEDDEDEDEDEDDADEDYDDDSVAVLEDEDEEDD 196

Query: 118 DEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSD 177
           +E LGDWAKLETMRSSHPMYFAKKL++V SDDPIDWMEQPPAG+ IQGL+RPA IEEHSD
Sbjct: 197 NETLGDWAKLETMRSSHPMYFAKKLAQVASDDPIDWMEQPPAGLAIQGLIRPAFIEEHSD 256

Query: 178 IQRHRSSNQYHDVD-NSKNVVVGNNQEDLHVINGHRNE---SEPSRNGSEESKKDDKPMN 233
           IQ+H S N  H+ D N     V +  E+   INGH +E   SE +  G+EES+KD  P N
Sbjct: 257 IQKHMSGNLSHNSDINETGKNVDSKLENDSGINGHEHEPGISEDNSVGAEESQKDKAPRN 316

Query: 234 GTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALK 293
           GTSFYKLEM KIQ I +   Q  V+ ED+RKAQPD IAHS+  I+SRLKAGGEK TQALK
Sbjct: 317 GTSFYKLEMIKIQLISSLGQQTVVEEEDFRKAQPDAIAHSSGKILSRLKAGGEKITQALK 376

Query: 294 SLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF 353
           SLCWR KG+QVEE AVI VDS+GFD RVC+ T+I+TLRF+FN+R +      R +  L  
Sbjct: 377 SLCWRCKGLQVEEAAVISVDSLGFDARVCSETKIETLRFSFNSRIS------RLVQSLHM 430

Query: 354 PRIHQ 358
           P + Q
Sbjct: 431 PSVAQ 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445979|ref|XP_004140749.1| PREDICTED: uncharacterized protein LOC101209928 [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/373 (58%), Positives = 270/373 (72%), Gaps = 20/373 (5%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           MF    N    ENIIWP+LPYVTD HGNIY Q KN E+ +++L SENNFVQV+IG DT E
Sbjct: 138 MFAGLINDEVQENIIWPELPYVTDAHGNIYFQAKNTEEAMKNLTSENNFVQVLIGIDTME 197

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDED---------------YDE 105
           MI EMEL G SEIDFG +E+DD  SD  D+D+D D ++EDED               Y+ 
Sbjct: 198 MINEMELFGPSEIDFGFEELDDGASDDGDDDDDGDGEDEDEDDDEDEDDDDDDADDEYNR 257

Query: 106 NWVNVLEDEDDE---DEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGIT 162
           +WV+V++DEDD+   DE LGDWAKLETMRSSHPM+FA KLSE+ SDDPIDWMEQPPA + 
Sbjct: 258 DWVSVIDDEDDQNHSDETLGDWAKLETMRSSHPMHFANKLSEIASDDPIDWMEQPPATLV 317

Query: 163 IQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGS 222
           IQG+LRPA  EE + I++H SS    + D ++   +  N E    IN H +ES  S++G 
Sbjct: 318 IQGVLRPAFNEEQTVIEKHLSSRHLSNGDINEAQELEENLEGHGRINHHGHESSSSKDGL 377

Query: 223 E--ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISR 280
              E+  +  P +  SFY+LEM K+Q    ++H + V+IED  KAQPD IAHSA  IISR
Sbjct: 378 NLMEALDESIPASEASFYRLEMIKVQLFTGNSHPSNVEIEDLMKAQPDAIAHSAEKIISR 437

Query: 281 LKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATS 340
           L+AGGEKTTQALKSLCWR KGIQVEE  + G+DS+GFD+RVC+ TQ+QTLRFAF+TRATS
Sbjct: 438 LRAGGEKTTQALKSLCWRCKGIQVEEAVINGIDSLGFDVRVCSETQVQTLRFAFDTRATS 497

Query: 341 EYSAERQLNDLLF 353
           E+SAE+QLNDLLF
Sbjct: 498 EFSAEKQLNDLLF 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358369|ref|NP_197794.2| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi|332005868|gb|AED93251.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/387 (52%), Positives = 270/387 (69%), Gaps = 39/387 (10%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLI-SENNFVQVIIGFDTT 59
           M +     G HENI+WPD+PYVTD+HGNIY QVK  EDI+Q+++ S+NN+VQVI+GFDT 
Sbjct: 116 MLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTM 175

Query: 60  EMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDED- 118
           EMIK+MEL+  S I FGI+EI+D +S+VEDE++ ++++ ED+D DE WV VLED DDED 
Sbjct: 176 EMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKD-DEEWVAVLEDGDDEDN 234

Query: 119 ------EMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI 172
                 E LGDWA LETMR  HPMYFA++++EV S DP++WM+QP AG+ IQGLL P ++
Sbjct: 235 YVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVIV 294

Query: 173 EEHSDIQRHRS------SNQYHDVDNSKNVVVG---NNQEDLHVINGHRNESEPSRNGSE 223
           E+HSDIQ+H S      +++  + +NS+ +  G   N  E LHV N              
Sbjct: 295 EDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEILHVENSR------------ 342

Query: 224 ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 283
                    N   +YKLE+ +IQ I A  HQ  V++ED RKAQPDVIA ++  I++RL+ 
Sbjct: 343 ---------NAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGILTRLEE 393

Query: 284 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYS 343
            G+K T+AL+SLCWR  GIQ EE  +IG+DS+GFDLR+C+G QI+TLRFAF+ RATSE++
Sbjct: 394 DGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETLRFAFSIRATSEHN 453

Query: 344 AERQLNDLLFPRIHQKPQKRKQTYQNE 370
           AE QL +LLF     KPQK KQT Q E
Sbjct: 454 AEGQLRELLFASTPSKPQKPKQTNQKE 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187889|ref|NP_001190376.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi|332005869|gb|AED93252.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/387 (52%), Positives = 270/387 (69%), Gaps = 39/387 (10%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLI-SENNFVQVIIGFDTT 59
           M +     G HENI+WPD+PYVTD+HGNIY QVK  EDI+Q+++ S+NN+VQVI+GFDT 
Sbjct: 129 MLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTM 188

Query: 60  EMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDED- 118
           EMIK+MEL+  S I FGI+EI+D +S+VEDE++ ++++ ED+D DE WV VLED DDED 
Sbjct: 189 EMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKD-DEEWVAVLEDGDDEDN 247

Query: 119 ------EMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI 172
                 E LGDWA LETMR  HPMYFA++++EV S DP++WM+QP AG+ IQGLL P ++
Sbjct: 248 YVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVIV 307

Query: 173 EEHSDIQRHRS------SNQYHDVDNSKNVVVG---NNQEDLHVINGHRNESEPSRNGSE 223
           E+HSDIQ+H S      +++  + +NS+ +  G   N  E LHV N              
Sbjct: 308 EDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEILHVENSR------------ 355

Query: 224 ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 283
                    N   +YKLE+ +IQ I A  HQ  V++ED RKAQPDVIA ++  I++RL+ 
Sbjct: 356 ---------NAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGILTRLEE 406

Query: 284 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYS 343
            G+K T+AL+SLCWR  GIQ EE  +IG+DS+GFDLR+C+G QI+TLRFAF+ RATSE++
Sbjct: 407 DGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETLRFAFSIRATSEHN 466

Query: 344 AERQLNDLLFPRIHQKPQKRKQTYQNE 370
           AE QL +LLF     KPQK KQT Q E
Sbjct: 467 AEGQLRELLFASTPSKPQKPKQTNQKE 493

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758230|dbj|BAB08729.1| unnamed protein product [Arabidopsis thaliana]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/387 (52%), Positives = 270/387 (69%), Gaps = 39/387 (10%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLI-SENNFVQVIIGFDTT 59
           M +     G HENI+WPD+PYVTD+HGNIY QVK  EDI+Q+++ S+NN+VQVI+GFDT 
Sbjct: 99  MLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTM 158

Query: 60  EMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDED- 118
           EMIK+MEL+  S I FGI+EI+D +S+VEDE++ ++++ ED+D DE WV VLED DDED 
Sbjct: 159 EMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKD-DEEWVAVLEDGDDEDN 217

Query: 119 ------EMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI 172
                 E LGDWA LETMR  HPMYFA++++EV S DP++WM+QP AG+ IQGLL P ++
Sbjct: 218 YVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVIV 277

Query: 173 EEHSDIQRHRS------SNQYHDVDNSKNVVVG---NNQEDLHVINGHRNESEPSRNGSE 223
           E+HSDIQ+H S      +++  + +NS+ +  G   N  E LHV N              
Sbjct: 278 EDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEILHVENSR------------ 325

Query: 224 ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 283
                    N   +YKLE+ +IQ I A  HQ  V++ED RKAQPDVIA ++  I++RL+ 
Sbjct: 326 ---------NAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGILTRLEE 376

Query: 284 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYS 343
            G+K T+AL+SLCWR  GIQ EE  +IG+DS+GFDLR+C+G QI+TLRFAF+ RATSE++
Sbjct: 377 DGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETLRFAFSIRATSEHN 436

Query: 344 AERQLNDLLFPRIHQKPQKRKQTYQNE 370
           AE QL +LLF     KPQK KQT Q E
Sbjct: 437 AEGQLRELLFASTPSKPQKPKQTNQKE 463

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2081182	459	AT3G59300 "AT3G59300" [Arabido	0.396	0.320	0.389	6.9e-45

TAIR|locus:2081182 AT3G59300 "AT3G59300" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 6.9e-45, Sum P(3) = 6.9e-45
 Identities = 58/149 (38%), Positives = 98/149 (65%)

Query:   214 ESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHS 273
             E +   N    S++D+  M+ +S Y+LE+  I+ +  +  ++++ ++D++ A+PD++ HS
Sbjct:   302 EVQGDDNPITSSRRDENDMS-SSLYRLEIVGIELLSLYGAESSISLQDFQDAEPDILVHS 360

Query:   274 AANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFA 333
              + II R    G  ++ ALK+LC + KG+  EE  +I VDS+G D+RV AG Q+QT RF 
Sbjct:   361 TSAIIERFNNRGINSSIALKALC-KKKGLHAEEANLISVDSLGMDVRVFAGAQVQTHRFP 419

Query:   334 FNTRATSEYSAERQLNDLLFPRIHQKPQK 362
             F TRAT+E +AE++++ LLFPR  ++  K
Sbjct:   420 FKTRATTEMAAEKKIHQLLFPRSRRRKLK 448

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G24060 unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49140.1); Has 287 Blast hits to 264 proteins in 72 species- Archae - 0; Bacteria - 18; Metazoa - 77; Fungi - 32; Plants - 41; Viruses - 10; Other Eukaryotes - 109 (source- NCBI BLink). (481 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	7e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
pfam05285	317	pfam05285, SDA1, SDA1	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	6e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	7e-04
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.001
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.001
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.002
pfam09073	424	pfam09073, BUD22, BUD22	0.002
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.003
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.004

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 67  LAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN 106
           ++G   +    DE DD++ D E+ED++ED+DE++ + +E+
Sbjct: 101 ISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 57  DTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDD 116
              +   + +   L + D   D+ D++D + +D+D+ +DEDEE ++  E  +  L D+DD
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE--LEKLSDDDD 186

Query: 117 EDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDW 153
                 D   L   R         KL+   + DP+  
Sbjct: 187 FVWDEDDSEALRQARKD------AKLTA--TADPVKA 215

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 32/48 (66%)

Query: 72  EIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
           E     ++ +D+D D+E+E+ED D  +E+ED ++   +  +DE++E+E
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 78  DEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNV-------LEDEDDEDE 119
           ++  + D D ++E+E E E++ED D +  W++V         D +DE+E
Sbjct: 89  EQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 16/52 (30%), Positives = 35/52 (67%)

Query: 72  EIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGD 123
           + +FG+ + ++++ + ED  +DEDE+++D+D +E   +V   +++EDE   D
Sbjct: 311 DDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 77  IDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
            ++ +DED  V D+D+D+D+D++  D D++ V++ +D+DD  E
Sbjct: 57  DEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 14/96 (14%)

Query: 53  IIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLE 112
            +GFD  E+I E  L    EI   +D+IDDE+ +    DED+D++++  D D++      
Sbjct: 198 ELGFDILELIIERLLKLDVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDD------ 251

Query: 113 DEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISD 148
           DE++ D       ++E   +   +  ++KL  ++  
Sbjct: 252 DEEESDP------EVERTSTIKEV--SEKLDAIMDL 279

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 21/40 (52%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 80  IDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
           IDD+D D EDED+D++ED+E+E+ +E  +   +DED+EDE
Sbjct: 153 IDDDDED-EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191

Length = 2849

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 69  GLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
           G  E D   +E   +D D ED+D+D +E+EED D  +   +  +++ D+++
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 71  SEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
            + +   +  +DEDSD E E  D + D+E E  D       EDE+++DE
Sbjct: 98  DDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS------EDEEEKDE 140

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 76  GIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHP 135
             DE   E+S  +D D++E+ED + EDY + +  +L D  DE+E     +      +S  
Sbjct: 177 SEDESKSEESAEDDSDDEEEEDSDSEDYSQ-YDGMLVDSSDEEEGEEAPSINYNEDTSES 235

Query: 136 MYFAKKLSEVISDDPIDWMEQPP 158
                      S    D  E  P
Sbjct: 236 ESDESDSEISESRSVSDSEESSP 258

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 63  KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
           KE E   + E D   DE DD+D D EDED+D+D+D+ED++ +++  + L D+   D+
Sbjct: 43  KEAEEEAMEEED--DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 18/57 (31%), Positives = 37/57 (64%)

Query: 63  KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
              ++  L++ D   D+ DD+D D +D D+D+D++++DED D++ V+  ++E  E +
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 66  ELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 119
           E A   E D   D+ DD+D D +D+D+D+DED+EDED D++ ++     DD +E
Sbjct: 47  EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 74  DFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEM 120
           + G+D+ D+ED D + E+E+ED D  DE+ DE      ED DDED+ 
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDE----EDEDSDDEDDE 369

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PF10615	83	DUF2470: Protein of unknown function (DUF2470); In	99.75
PF13883	170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	99.37
COG0748	245	HugZ Putative heme iron utilization protein [Inorg	99.32
PRK03467	144	hypothetical protein; Provisional	93.87
COG0748	245	HugZ Putative heme iron utilization protein [Inorg	93.03
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	81.42

>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known

Probab=99.75  E-value=3.1e-18  Score=137.62  Aligned_cols=80  Identities=28%  Similarity=0.386  Sum_probs=64.9

Q ss_pred             Cchhhh-hhHHHHHHHhcCCcchHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHH
Q 017442          267 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA  344 (371)
Q Consensus       267 PDpLA~-~Ea~II~HMN~DHada~~AL~~la~~~~g~-~v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~da  344 (371)
                      |||+++ .+++||+|||+||+++   |.+||+++.++ .+.+|+|++||++||+|++   .+.+.+||||++|+++++++
T Consensus         2 ~dp~~~~~~~~ii~HMN~DH~d~---l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~   75 (83)
T PF10615_consen    2 PDPLAPEAAARIIEHMNDDHADD---LLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEA   75 (83)
T ss_dssp             --TTTTHHHHHHHHHHHHH-HHH---HHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCH
T ss_pred             cCcccHHHHHHHHHHHHHhHHHH---HHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHH
Confidence            789985 9999999999999998   99999998888 4689999999999999999   24589999999999999999


Q ss_pred             HHHHHHhc
Q 017442          345 ERQLNDLL  352 (371)
Q Consensus       345 rkaLv~LL  352 (371)
                      |++|++|.
T Consensus        76 r~~lV~ma   83 (83)
T PF10615_consen   76 RDALVEMA   83 (83)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999983

; PDB: 3GAS_D 3SWJ_A 2ARZ_B.

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C

Probab=99.37  E-value=6.9e-13  Score=119.77  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             ccccCCCCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCC
Q 017442          151 IDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDK  230 (371)
Q Consensus       151 ~~~m~~p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~  230 (371)
                      .+.|+...+||||+|.++++..+|...+|++|+.+++.+..                                     +.
T Consensus        91 ~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~-------------------------------------w~  133 (170)
T PF13883_consen   91 VDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKH-------------------------------------WL  133 (170)
T ss_dssp             --TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGG-------------------------------------S-
T ss_pred             CCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccc-------------------------------------cc
Confidence            45677788999999999999877777899999999888776                                     35


Q ss_pred             CC---CCeEEEEEEEeEEEEEcCCccccccCHhhhh
Q 017442          231 PM---NGTSFYKLEMTKIQPILAHAHQAAVDIEDYR  263 (371)
Q Consensus       231 ~~---~DFsFYRLe~~rVrlIGGFGra~wV~~eDy~  263 (371)
                      ++   |||.||||++++|+||||||+++||++++|.
T Consensus       134 ~~~~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~  169 (170)
T PF13883_consen  134 PFNSPHDFFFYRLEIERVYLVGGFGGAAWISAEEYY  169 (170)
T ss_dssp             GG---G--EEEEEEEEEEEEE-SSSS-EEE-HHHHH
T ss_pred             cccccCccEEEEEEEEEEEEECccCCceEeCHHHhc
Confidence            55   9999999999999999999999999999996

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]

Probab=99.32  E-value=5e-13  Score=127.57  Aligned_cols=171  Identities=11%  Similarity=0.001  Sum_probs=130.8

Q ss_pred             HhcCCcccccCCCCCeeeEEEEeeeccccc--chHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCC
Q 017442          145 VISDDPIDWMEQPPAGITIQGLLRPALIEE--HSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGS  222 (371)
Q Consensus       145 ~~~~~~~~~m~~p~arlti~G~~rpa~~ee--~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~  222 (371)
                      .+...+...=.+--+|||++|.+.....++  .+.+|++++.+.|.+..                               
T Consensus        67 il~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~-------------------------------  115 (245)
T COG0748          67 ILLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPL-------------------------------  115 (245)
T ss_pred             heecCcCcCChhhccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCce-------------------------------
Confidence            456677777778888999999988875332  33468888888666555                               


Q ss_pred             cccccCCCCCCCeEEEEEEEeEEEEEcCCcc-ccccCHhhhhccCCchhhhhhHHHHHHHhcCCcchHHHHHHHHHHhcC
Q 017442          223 EESKKDDKPMNGTSFYKLEMTKIQPILAHAH-QAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKG  301 (371)
Q Consensus       223 ~~~~~~~~~~~DFsFYRLe~~rVrlIGGFGr-a~wV~~eDy~aA~PDpLA~~Ea~II~HMN~DHada~~AL~~la~~~~g  301 (371)
                            +.+.+||.+|++++.+...++|+++ ...+-.+|...   .-.+..+.+++.|||++|.++   +..|++.+.+
T Consensus       116 ------~~~~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~---a~s~~~r~rl~~hmnAd~~ea---i~~yaqv~~~  183 (245)
T COG0748         116 ------YVDDGDYYIYISEIARHARNLGFNPKVSVMFIEDEAK---AKSAFARKRLREHMNADHAEA---IAEYAQVLAQ  183 (245)
T ss_pred             ------EecCCceEEEEehHHHHhhccCcCCchhhheecCchh---hhhHHHHHHHHHHhhhHHHHH---HHHHHHHHHH
Confidence                  5788899999999999999999998 22222222111   223667789999999999877   8999988766


Q ss_pred             CCCCc-eEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcCc-cccC
Q 017442          302 IQVEE-EAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP-RIHQ  358 (371)
Q Consensus       302 ~~v~~-armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~p-~~~~  358 (371)
                      +.... .+|.|||+.|+++.+....+...+|+.|+++.....+.+.+|++|... |...
T Consensus       184 ~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~h~~~  242 (245)
T COG0748         184 LAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGGPHGFA  242 (245)
T ss_pred             HhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcCccccc
Confidence            54333 449999999999998644455799999999999999999999999853 5443

>PRK03467 hypothetical protein; Provisional

Probab=93.87  E-value=0.15  Score=45.98  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             HhcCCcccccCCCCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcc
Q 017442          145 VISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEE  224 (371)
Q Consensus       145 ~~~~~~~~~m~~p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~  224 (371)
                      .|..+|-.|..  =.||-+.|.++++..+|+...|++|..++|-+..                                 
T Consensus        69 TI~~~~~~v~~--I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~---------------------------------  113 (144)
T PRK03467         69 TVNGQPKTVAL--IRGVQFKGEIRRLEGEESDAARKRYNRRFPVARA---------------------------------  113 (144)
T ss_pred             EEcCCCcchhh--ceEEEEEEEEEecChhHHHHHHHHHHHhCcchhc---------------------------------
Confidence            34455555554  2588899999999877777789999999776655                                 


Q ss_pred             cccCCCCCCCeEEEEEEEeEEEEEc---CCcc-ccc
Q 017442          225 SKKDDKPMNGTSFYKLEMTKIQPIL---AHAH-QAA  256 (371)
Q Consensus       225 ~~~~~~~~~DFsFYRLe~~rVrlIG---GFGr-a~w  256 (371)
                           .   ...+|+|++..|.|++   |||+ ..|
T Consensus       114 -----~---~~~iw~l~l~~iK~tdN~LGFgkKl~w  141 (144)
T PRK03467        114 -----L---SAPVWELRLDEIKMTDNTLGFGKKLHW  141 (144)
T ss_pred             -----c---CCceEEEEEEEEEEeccccccccceEE
Confidence                 1   2358999999999999   9995 455

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]

Probab=93.03  E-value=0.1  Score=50.80  Aligned_cols=68  Identities=18%  Similarity=0.130  Sum_probs=55.2

Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHH
Q 017442          276 NIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLND  350 (371)
Q Consensus       276 ~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~  350 (371)
                      ++++|||+.|-..   +..+|....+....++-+.+||..|+|+-   |....++|.-|+..+ .+.+.|-.|--
T Consensus         2 ~~ea~~na~~~l~---~~~~~~l~~~~~~~g~p~~sv~~~gid~~---g~p~~~~~~~~~h~~-~~~d~r~sil~   69 (245)
T COG0748           2 DIEAHMNARHLLR---SARLAALAGLEPVTGVPFVSVVPVGIDID---GNPLILLSRLFPHTA-DEADPRCSILL   69 (245)
T ss_pred             cHHHHHHHHHHHH---HHHHHHHhcCCCCCCCceeeeccceeccC---CCcceeEeeeccccc-cccChhhhhee
Confidence            5789999999876   77888755555668899999999999993   455689999999998 88887766643

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=81.42  E-value=1.1  Score=47.19  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=13.4

Q ss_pred             eeccCCccccccccCccccccccccc
Q 017442          108 VNVLEDEDDEDEMLGDWAKLETMRSS  133 (371)
Q Consensus       108 ~~~~~~~~~~~~~~~~w~~~~t~~~~  133 (371)
                      |+.-|||++++..+.=|+---|....
T Consensus       109 FAdSDDEdD~~sd~~~WtP~~~t~~~  134 (458)
T PF10446_consen  109 FADSDDEDDDGSDYEFWTPGATTAAT  134 (458)
T ss_pred             cccccccccccccceeeccccccccc
Confidence            33333333344678888765544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	99.97
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	99.96
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	99.48
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	99.46
1xhn_A	184	CREG, cellular repressor of E1A-stimulated genes;	98.98
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	98.85
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	98.76
3tgv_A	148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	98.33
1vl7_A	157	Hypothetical protein ALR5027; structural genomics,	97.4
2hq7_A	146	Protein, related to general stress protein 26(GS2	86.31
2fhq_A	141	Putative general stress protein; alpha-beta struct	81.6

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=99.97  E-value=1.7e-30  Score=244.79  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=129.4

Q ss_pred             CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442          158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF  237 (371)
Q Consensus       158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF  237 (371)
                      .+||+|+|.++++..+|...++++|+.+++....                                     +.+++||.|
T Consensus       104 ~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~-------------------------------------~~~~~df~l  146 (258)
T 3dnh_A          104 LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKL-------------------------------------YLSLPDTRL  146 (258)
T ss_dssp             SCEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHH-------------------------------------HTSSTTEEE
T ss_pred             CCeEEEEEEEEEcCchHHHHHHHHHHHHCcChHH-------------------------------------cccCCCeEE
Confidence            4799999999999766667799999999766544                                     356789999


Q ss_pred             EEEEEeEEEEEcCCcc-ccccCHhhhhc--cCCchhhhhhHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecC
Q 017442          238 YKLEMTKIQPILAHAH-QAAVDIEDYRK--AQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDS  314 (371)
Q Consensus       238 YRLe~~rVrlIGGFGr-a~wV~~eDy~a--A~PDpLA~~Ea~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr  314 (371)
                      |||++++++|+||||+ ++||++++|.+  |.||||++.+++||+|||++| ++   |.+||+ +.|+.++.|+|+||||
T Consensus       147 ~rl~~~~v~~v~GFG~~a~~v~~~d~~~~~a~~d~l~~~~~~ii~hmN~dH-d~---l~~~~~-~~~~~~~~a~~~~vD~  221 (258)
T 3dnh_A          147 YRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIK-GE---ASRLAV-LAGAKTGRWKITSIDP  221 (258)
T ss_dssp             EEEEEEEEEEEC------CCCCHHHHSCCCTTCHHHHHHHHHHHHHHHTST-TH---HHHHHH-HTTCCCSSCEEEEEET
T ss_pred             EEEEEeEEEEEcccCcccccCCHHHhcccCCCCchhHHHHHHHHHHHHhhH-HH---HHHHHH-hCCCCCCcEEEEEEcc
Confidence            9999999999999999 99999999999  889999999999999999999 88   999999 8898889999999999


Q ss_pred             CCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442          315 IGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF  353 (371)
Q Consensus       315 ~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~  353 (371)
                      +|||||++    .+.+||+|+   ++++++|++|++|+.
T Consensus       222 ~G~dl~~~----~~~~Ri~F~---~d~~~~r~~lv~m~~  253 (258)
T 3dnh_A          222 DGIDLASA----SDLARLWFA---ERVETLKQFEKALAQ  253 (258)
T ss_dssp             TEEEEECS----SCEEEEECS---SCCCSHHHHHHHHHH
T ss_pred             CcCEEEEC----CEEEEeeCC---CCHHHHHHHHHHHHH
Confidence            99999983    389999999   899999999999984

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=99.96  E-value=9.1e-30  Score=235.05  Aligned_cols=151  Identities=13%  Similarity=0.099  Sum_probs=134.0

Q ss_pred             CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442          158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF  237 (371)
Q Consensus       158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF  237 (371)
                      -.+|+|.|.++++..++...++.+|..+++....                                     +.+.++|.|
T Consensus        85 ~~~v~l~G~a~~v~d~e~~~~~~~~~~~~P~~~~-------------------------------------~~~~~~~~l  127 (247)
T 2arz_A           85 VGRLTLLAEARQLAEEEVAAAAERYYRYFPESAD-------------------------------------YHRVHDFDF  127 (247)
T ss_dssp             SCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTT-------------------------------------CBTTBBEEE
T ss_pred             CceEEEEEEEEECCcHHHHHHHHHHHHHCcChhh-------------------------------------cccccCcEE
Confidence            4699999999999754445689999887554322                                     346789999


Q ss_pred             EEEEEeEEEEEcCCccccccCHhhhhccCCchhhh-hhHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecCCC
Q 017442          238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIG  316 (371)
Q Consensus       238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~PDpLA~-~Ea~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr~G  316 (371)
                      |||+|++++|++|||+++||++++|.+|  |||+. .+++||+|||+||+++   |.+||+++.++..+.|+|+|||++|
T Consensus       128 ~rl~~~~~~~~~gfG~~~~v~~~~~~~a--dp~~~~~~~~ii~hmN~dH~~~---l~~~~~~~~~~~~~~~~~~~iD~~G  202 (247)
T 2arz_A          128 WVLQPVQWRFIGGFGAIHWLAAERVPLA--NPFAGEAERGMVEHMNSDHAAA---IAHYVELAGLPAHAAAQLAGIDTEG  202 (247)
T ss_dssp             EEEEEEEEEEECTTCCEEEEETTTSCCC--CTTTTHHHHHHHHHHHHHCHHH---HHHHHHHHCCCCSSCCEEEEECSSE
T ss_pred             EEEEEEEEEEEcCCCceEEeChhhhccc--hhhhhhhHHHHHHHHHHHHHHH---HHHHHHHhCCCCccceEEEEEccCC
Confidence            9999999999999999999999999988  99999 9999999999999987   9999999888877889999999999


Q ss_pred             ceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcCc
Q 017442          317 FDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP  354 (371)
Q Consensus       317 fDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~p  354 (371)
                      ||||+.    .+.+||+|++|+++..++|++|++|+..
T Consensus       203 ~~l~~~----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~  236 (247)
T 2arz_A          203 FHLRIG----QGLHWLPFPAACGNPGAVRQALVQLARA  236 (247)
T ss_dssp             EEEEET----TEEEEEECSSCCCSHHHHHHHHHHHHHC
T ss_pred             CEEEEC----CEEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            999984    2789999999999999999999999964

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=99.48  E-value=4.4e-14  Score=134.04  Aligned_cols=73  Identities=25%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442          275 ANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF  353 (371)
Q Consensus       275 a~II~HMN~DHada~~AL~~la~~~~g~~-v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~  353 (371)
                      ++||+|||+||+++   |.+||+++.|+. +..|+|++||++||+|++.   +...+||+|++|++++.++|++|++|..
T Consensus         3 ~~ii~HMN~DH~da---l~~y~~~~~~~~~~~~a~m~~iD~~G~~l~~~---~~~~~ri~F~~~~~~~~~~r~~lV~m~~   76 (259)
T 3gas_A            3 NRIIEHMNAHHVED---MKGLLKKFGQVHHAENVAFKSVDSQGIVIGYN---NNQTLRIEFNHEVKDPKDYKNATIELCQ   76 (259)
T ss_dssp             HHHHHHHHHHCHHH---HHHHHHHHHCCCSCCSCEEEEEETTEEEEEET---TTEEEEEECSSCCCCGGGHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHH---HHHHHHHhCCCCCCCceEEEEEecCccEEEEC---CceEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            58999999999988   999999998885 6789999999999999983   2489999999999999999999999984

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=99.46  E-value=6.8e-14  Score=131.69  Aligned_cols=72  Identities=28%  Similarity=0.414  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442          275 ANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF  353 (371)
Q Consensus       275 a~II~HMN~DHada~~AL~~la~~~~g~~-v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~  353 (371)
                      ++||+|||+||+++   |.+||+++.|+. +..|+|++||++||+|+++   +...+||+|++|+ ++.++|++|++|+.
T Consensus         4 ~~i~~HMN~DH~d~---~~~~a~~~~~~~~~~~~~~~~iD~~g~~l~~~---~~~~~ri~F~~~~-~~~~~r~~lv~m~~   76 (251)
T 3swj_A            4 ESIISHMNDHHKSN---LVDLCKKFGGIEQVQDVFLKSVDFNGLDLVYN---DKENLRVEFPKKA-DENTIKDTIISLCM   76 (251)
T ss_dssp             HHHHHHHHHSCSHH---HHHHHHHHTCCSCCC-CEEEEEETTEEEEEC------CEEEEECSSCC-CTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHH---HHHHHHHhCCCCCCCeeEEEEEecccCEEEeC---CceEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence            58999999999998   999999998884 7899999999999999883   2479999999999 99999999999984

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1

Probab=98.98  E-value=5.5e-10  Score=99.16  Aligned_cols=73  Identities=15%  Similarity=0.017  Sum_probs=61.1

Q ss_pred             CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442          158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF  237 (371)
Q Consensus       158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF  237 (371)
                      -+||+|.|.++++..+|...++++|+.+++....                                     +.+.++|.|
T Consensus       111 ~~rvtl~G~a~~v~d~e~~~~~~~~~~~hP~~~~-------------------------------------~~~~~~~~~  153 (184)
T 1xhn_A          111 CVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKT-------------------------------------WPSSHNWFF  153 (184)
T ss_dssp             SCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGG-------------------------------------SCGGGCCEE
T ss_pred             CceEEEEEEEEECChHHHHHHHHHHHHHCcChhH-------------------------------------cccCCCEEE
Confidence            4699999999999765556788889987655433                                     235679999


Q ss_pred             EEEEEeEEEEEcCCccccccCHhhhhccCC
Q 017442          238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQP  267 (371)
Q Consensus       238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~P  267 (371)
                      |||++++++|++|||+++||++++|.+|.|
T Consensus       154 ~~l~i~~i~~v~gFG~~~~v~~~~~~~a~~  183 (184)
T 1xhn_A          154 AKLNITNIWVLDYFGGPKIVTPEEYYNVTV  183 (184)
T ss_dssp             EEEEEEEEEEECSSSSCEECCHHHHHHCC-
T ss_pred             EEEEEeEEEEEccCCceEEeCHHHHhhccC
Confidence            999999999999999999999999998876

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=98.85  E-value=7.5e-10  Score=105.04  Aligned_cols=75  Identities=7%  Similarity=-0.094  Sum_probs=60.4

Q ss_pred             CCeeeEEEEeeecccc-cchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeE
Q 017442          158 PAGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTS  236 (371)
Q Consensus       158 ~arlti~G~~rpa~~e-e~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFs  236 (371)
                      ..|||++|.++++..+ +...++.+|+.+++...+                                  -+.+.+++||.
T Consensus       164 ~~Rlt~~g~A~~v~~~~~~~~~~~~~~~r~p~~~~----------------------------------~~~~~~~~DF~  209 (259)
T 3gas_A          164 RKRLRYKTNTRFIERGAEFDKAFDSFIEKTGGAGG----------------------------------IKTIRAMQDFH  209 (259)
T ss_dssp             CCEEEEEEEEEEECSSHHHHHHHHHHHHHHCSTTT----------------------------------HHHHHTCTTEE
T ss_pred             cCeEEEEEEEEECCCchHHHHHHHHHHHHcCCchh----------------------------------hHhcccCCCeE
Confidence            4799999999999643 344589999998554211                                  02257899999


Q ss_pred             EEEEEEeEEEEEcCCccccccCHhhhhccC
Q 017442          237 FYKLEMTKIQPILAHAHQAAVDIEDYRKAQ  266 (371)
Q Consensus       237 FYRLe~~rVrlIGGFGra~wV~~eDy~aA~  266 (371)
                      ||||+|+++|||+|||+++||++++|....
T Consensus       210 l~rl~p~~~r~v~GFG~a~~l~~~~l~~~~  239 (259)
T 3gas_A          210 LIALDFKEGRFVKGFGQAYDILGDKIAYVG  239 (259)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEETTEEEESC
T ss_pred             EEEEEEeEEEEEccccEEEEeCHHHHHHhh
Confidence            999999999999999999999999998644

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=98.76  E-value=3e-09  Score=100.10  Aligned_cols=74  Identities=9%  Similarity=-0.039  Sum_probs=59.9

Q ss_pred             CeeeEEEEeeecccc-cchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442          159 AGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF  237 (371)
Q Consensus       159 arlti~G~~rpa~~e-e~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF  237 (371)
                      .||+|+|.++.+..+ +...++.+|+.+++.+..                                  -+.+.+++||.|
T Consensus       165 ~rltl~G~a~~v~~~~e~~~~~~~~~~k~p~a~~----------------------------------~~~~~~~~Df~l  210 (251)
T 3swj_A          165 KRLRYRVNASFLERGERFDQIYDEFEKQTGGEGG----------------------------------IKTIRKMLDFHL  210 (251)
T ss_dssp             CEEEEEEEEEECCSSHHHHHHHHHHHHHHCSTTT----------------------------------HHHHHTCTTEEE
T ss_pred             ceEEEEEEEEEecChhHHHHHHHHHHHHCCCchh----------------------------------hhhcCcccCEEE
Confidence            699999999999753 445688889888554311                                  012467899999


Q ss_pred             EEEEEeEEEEEcCCccccccCHhhhhccC
Q 017442          238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQ  266 (371)
Q Consensus       238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~  266 (371)
                      |||+|++++||+|||+++||++++|..+.
T Consensus       211 ~rl~p~~~r~v~GFG~a~~l~~~~l~~~~  239 (251)
T 3swj_A          211 VKLEFKKGRFVKGFGQAYDIENGNVTHVG  239 (251)
T ss_dssp             EEEEEEEEEEEEETTEEEEESSSCCEESC
T ss_pred             EEEEeeEEEEECCcceeEEeCHHHHHHhh
Confidence            99999999999999999999999998765

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}

Probab=98.33  E-value=1.4e-07  Score=81.27  Aligned_cols=60  Identities=3%  Similarity=-0.043  Sum_probs=44.7

Q ss_pred             CCeeeEEEEeeecccccc--hHHHHHhhcCC-CCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 017442          158 PAGITIQGLLRPALIEEH--SDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG  234 (371)
Q Consensus       158 ~arlti~G~~rpa~~ee~--s~ir~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~D  234 (371)
                      .+||||+|.++.+..+++  ..++++|+.++ +...                                     .+.+++|
T Consensus        79 ~~rltl~G~a~~v~~~~~~~~~~~~~~~~~~~~~a~-------------------------------------~~~~~~D  121 (148)
T 3tgv_A           79 RKRLTFDAVASMVERDSELWCQVIAQMGERFGEIID-------------------------------------GLSQLQD  121 (148)
T ss_dssp             CCEEEEEEEEEEECTTSHHHHHHHHHHHHHHCTHHH-------------------------------------HHTTCTT
T ss_pred             ceEEEEeeeEEEcCCCcHHHHHHHHHHHhhcchhhh-------------------------------------HhhccCC
Confidence            479999999999974332  34666676652 2111                                     1467899


Q ss_pred             eEEEEEEEeEEEEEcCCccc
Q 017442          235 TSFYKLEMTKIQPILAHAHQ  254 (371)
Q Consensus       235 FsFYRLe~~rVrlIGGFGra  254 (371)
                      |.||||+|++++||||||-.
T Consensus       122 F~~~rl~p~~~r~V~GFG~~  141 (148)
T 3tgv_A          122 FMLFRLQPEQGLFVKGFGLE  141 (148)
T ss_dssp             EEEEEEEECSCCEEESCGGG
T ss_pred             EEEEEEEeEEEEEECccccc
Confidence            99999999999999999954

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1

Probab=97.40  E-value=4.3e-05  Score=65.46  Aligned_cols=59  Identities=3%  Similarity=-0.063  Sum_probs=43.7

Q ss_pred             CCeeeEEEEeeeccccc--chHHHHHhhcCCCCC-CcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 017442          158 PAGITIQGLLRPALIEE--HSDIQRHRSSNQYHD-VDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG  234 (371)
Q Consensus       158 ~arlti~G~~rpa~~ee--~s~ir~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~D  234 (371)
                      ..+|+|.|.++.+..++  ...++.+|..+++.. ..                                     +.+.++
T Consensus        96 ~~~v~i~G~a~~v~~~~~~~~~~~~~~~~~~p~~~~~-------------------------------------~~~~~~  138 (157)
T 1vl7_A           96 RRRLSFDCTATLIERESQKWNQVVDQFQERFGQIIEV-------------------------------------LRGLAD  138 (157)
T ss_dssp             CCEEEEEEEEEEECTTSHHHHHHHHHHHHHHTHHHHH-------------------------------------HHHHSC
T ss_pred             CceEEEEEEEEEcCCCcHHHHHHHHHHHHHCchHHHH-------------------------------------hhccCC
Confidence            37899999999996442  235777787763321 11                                     134569


Q ss_pred             eEEEEEEEeEEEEEcCCcc
Q 017442          235 TSFYKLEMTKIQPILAHAH  253 (371)
Q Consensus       235 FsFYRLe~~rVrlIGGFGr  253 (371)
                      |.+|||+|++++|++|||+
T Consensus       139 ~~l~~l~~~~~~~~~GFG~  157 (157)
T 1vl7_A          139 FRIFQLTPKEGRFVIGFGA  157 (157)
T ss_dssp             CEEEEEEEEEEEEECSSCC
T ss_pred             EEEEEEEEeEEEEEcCcCC
Confidence            9999999999999999996

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1

Probab=86.31  E-value=0.89  Score=37.09  Aligned_cols=23  Identities=0%  Similarity=-0.363  Sum_probs=21.1

Q ss_pred             CCCeEEEEEEEeEEEEEcCCccc
Q 017442          232 MNGTSFYKLEMTKIQPILAHAHQ  254 (371)
Q Consensus       232 ~~DFsFYRLe~~rVrlIGGFGra  254 (371)
                      .+++.+|||.|.+++|..|+|++
T Consensus       114 ~~~~~~~~i~p~~~~~w~~~~~~  136 (146)
T 2hq7_A          114 DPDYTALCFTAEWGNYYRHLKNI  136 (146)
T ss_dssp             CTTEEEEEEEEEEEEEEETTEEE
T ss_pred             CCCEEEEEEEccEEEEEeCCCCe
Confidence            36899999999999999999986

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1

Probab=81.60  E-value=3.5  Score=33.26  Aligned_cols=22  Identities=9%  Similarity=0.033  Sum_probs=19.0

Q ss_pred             CCCeEEEEEEEeEEEEEcCCccc
Q 017442          232 MNGTSFYKLEMTKIQPILAHAHQ  254 (371)
Q Consensus       232 ~~DFsFYRLe~~rVrlIGGFGra  254 (371)
                      .+++.+|||+|.+++|..| |+.
T Consensus       114 ~~~~~~~~i~p~~~~~~~~-~~~  135 (141)
T 2fhq_A          114 DPGYVLLKFTANHATYWIE-GTF  135 (141)
T ss_dssp             CTTEEEEEEEEEEEEEEET-TEE
T ss_pred             CCCEEEEEEEcCEEEEeeC-Cce
Confidence            4689999999999999988 654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d2arza1	238	b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps	1e-08

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 8/126 (6%)

Query: 227 KDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGE 286
            D   ++   F+ L+  + + I        +  E    A P         +         
Sbjct: 113 ADYHRVHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGMVEH----MNS 168

Query: 287 KTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAER 346
               A+                + G+D+ GF LR+  G         F     +  +  +
Sbjct: 169 DHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQG----LHWLPFPAACGNPGAVRQ 224

Query: 347 QLNDLL 352
            L  L 
Sbjct: 225 ALVQLA 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	100.0
d1xhna1	170	Cellular repressor of E1A-stimulated genes CREG1 {	99.47
d1vl7a_	135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	98.48

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.3e-33  Score=255.12  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=140.7

Q ss_pred             CCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeE
Q 017442          157 PPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTS  236 (371)
Q Consensus       157 p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFs  236 (371)
                      ..+|+|++|.++++..+|...+|.+|+.+++....                                     +.+++||.
T Consensus        80 ~~~R~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~-------------------------------------~~~~~Df~  122 (238)
T d2arza1          80 AVGRLTLLAEARQLAEEEVAAAAERYYRYFPESAD-------------------------------------YHRVHDFD  122 (238)
T ss_dssp             SSCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTT-------------------------------------CBTTBBEE
T ss_pred             cccceeeeeeeEecCchHHHHHHHHHHHhccchhh-------------------------------------hcccCcEE
Confidence            35799999999999888878899999999776655                                     56789999


Q ss_pred             EEEEEEeEEEEEcCCccccccCHhhhhccCCchhhhhhHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecCCC
Q 017442          237 FYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIG  316 (371)
Q Consensus       237 FYRLe~~rVrlIGGFGra~wV~~eDy~aA~PDpLA~~Ea~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr~G  316 (371)
                      ||||+|.+++||||||+++||++++|..+.|++ +..+++||+|||+||+++   |.+||+++.++.+++|+|+|||++|
T Consensus       123 ~~~l~~~~~~~V~GFG~a~~i~~~~~~~~~~~~-~~~~~~ii~hmN~dH~d~---l~~~~~~~~~~~~~~a~m~~iD~~G  198 (238)
T d2arza1         123 FWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA-GEAERGMVEHMNSDHAAA---IAHYVELAGLPAHAAAQLAGIDTEG  198 (238)
T ss_dssp             EEEEEEEEEEEECTTCCEEEEETTTSCCCCTTT-THHHHHHHHHHHHHCHHH---HHHHHHHHCCCCSSCCEEEEECSSE
T ss_pred             EEEEeeeEEEEEcCCCccccccHHHhhhccchh-hhhhHHHHhhcchhhHHH---HHHHHHHhCCCCCCceEEEEEccCc
Confidence            999999999999999999999999998877765 567889999999999987   9999999888888899999999999


Q ss_pred             ceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC-ccccC
Q 017442          317 FDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF-PRIHQ  358 (371)
Q Consensus       317 fDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~-p~~~~  358 (371)
                      |+|+++.    +++||+|++|++++.++|++|++|+. .|.|.
T Consensus       199 ~~l~~~~----~~~ri~F~~~~~~~~~~r~~lv~l~~~ar~~~  237 (238)
T d2arza1         199 FHLRIGQ----GLHWLPFPAACGNPGAVRQALVQLARAERWPT  237 (238)
T ss_dssp             EEEEETT----EEEEEECSSCCCSHHHHHHHHHHHHHCSSCCC
T ss_pred             CEEEECC----EEEEEeCCCcCCCHHHHHHHHHHHHHHhhccC
Confidence            9999843    79999999999999999999999995 47663

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=126.08  Aligned_cols=74  Identities=15%  Similarity=0.014  Sum_probs=66.7

Q ss_pred             CCCCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 017442          155 EQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG  234 (371)
Q Consensus       155 ~~p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~D  234 (371)
                      +..-+||||+|.++++..+|...+|.+|+.+++....                                     +.++||
T Consensus        96 ~p~~aRlTl~G~~~~v~~~e~~~a~~~yl~rHP~a~~-------------------------------------w~~~~d  138 (170)
T d1xhna1          96 SPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKT-------------------------------------WPSSHN  138 (170)
T ss_dssp             STTSCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGG-------------------------------------SCGGGC
T ss_pred             CCCCcEEEEEEEEEECCcHHHHHHHHHHHHHHHHHHh-------------------------------------CcccCC
Confidence            3445899999999999887777899999999887766                                     578899


Q ss_pred             eEEEEEEEeEEEEEcCCccccccCHhhhhcc
Q 017442          235 TSFYKLEMTKIQPILAHAHQAAVDIEDYRKA  265 (371)
Q Consensus       235 FsFYRLe~~rVrlIGGFGra~wV~~eDy~aA  265 (371)
                      |.||||++++|+||||||+++||+++||..|
T Consensus       139 f~f~~l~i~~i~~vgGFG~~~~i~~~eY~~a  169 (170)
T d1xhna1         139 WFFAKLNITNIWVLDYFGGPKIVTPEEYYNV  169 (170)
T ss_dssp             CEEEEEEEEEEEEECSSSSCEECCHHHHHHC
T ss_pred             eEEEEEEeeEEEEECccCcceEeCHHHHhhc
Confidence            9999999999999999999999999999875

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Alr5027
species: Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]

Probab=98.48  E-value=5.2e-08  Score=79.64  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             CCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEe
Q 017442           19 LPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIG   55 (371)
Q Consensus        19 ~~y~~d~~g~i~f~v~~~~~il~~~~~~~n~v~v~ig   55 (371)
                      ++|+.|+.|+|||=+.....=.+.|. .|+-|.++|.
T Consensus        27 v~y~~~~~~~~~~~~s~~s~h~~Ni~-~np~vSl~i~   62 (135)
T d1vl7a_          27 APFVIDDAKNIYIYVSGLAVHTKNIE-ANPLVNVLFV   62 (135)
T ss_dssp             EEEEECTTCCEEEEECTTSHHHHHHH-HCCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEecchHHHHHHHH-hCCceEEEEe
Confidence            47999999999999998887777775 5566777764