Citrus Sinensis ID: 017447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHEcEEcccccccccccccccEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLqkgyglgsGISLFIATNICENIIwkafspttinsgrgaefEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVvlpvrsknargqqgsypiklfytsnmPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKwkeseysggqyvpvggIAYYitapssladmaanPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEqqmvmpghreANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVrsknargqqgsYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
**AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVS***************************KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE**********
**AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSA***********MVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFE************
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF*GF
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MFAKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q54XK2475 Protein transport protein yes no 0.967 0.755 0.733 1e-157
Q90ZM2476 Protein transport protein yes no 0.967 0.754 0.706 1e-145
Q90YL4476 Protein transport protein yes no 0.967 0.754 0.703 1e-145
Q8AY31476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
P38379494 Protein transport protein N/A no 0.935 0.702 0.719 1e-144
Q8AY32476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
Q7T278476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
Q7T277476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
Q8AY36476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
Q8AY35476 Protein transport protein N/A no 0.967 0.754 0.703 1e-144
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1 Back     alignment and function desciption
 Score =  553 bits (1425), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/360 (73%), Positives = 309/360 (85%), Gaps = 1/360 (0%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
           + AQKL G++I +G+ VAY+ SG YG    LG GN  LI++QL FAGIIV+ LDELLQKG
Sbjct: 114 SAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKG 173

Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YG+GSGISLFIATNICE I+WK FSPTT++ G+G EFEGAVIALFHLL+TRNDKVRAL+E
Sbjct: 174 YGIGSGISLFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKE 233

Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
           AFYRQNLPN+TNLLATVLIF++VIYFQGFRV LPV+S    GQQG+YPIKLFYTSN+PII
Sbjct: 234 AFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPII 293

Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
           LQSALVSNLYFISQL+YRR+  N  VNL G W+ SEYS  Q +PV G+ YYI++P++++ 
Sbjct: 294 LQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYS-QQMIPVSGLTYYISSPNNMSA 352

Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKEL 310
           + A+PFHALFY+ FML++CALFSK WIEVSGSSARDVAKQLK+QQM M GHR+ ++ KEL
Sbjct: 353 VLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQMTMKGHRDTSVIKEL 412

Query: 311 NRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 370
           NRYIPTAAAFGG+CIGALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct: 413 NRYIPTAAAFGGLCIGALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q90YL4|S61A2_DANRE Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3 Back     alignment and function description
>sp|Q8AY31|SC61A_BOVVA Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|P38379|SC61A_PYRSA Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
302142877410 unnamed protein product [Vitis vinifera] 0.973 0.880 0.972 0.0
225461724 476 PREDICTED: protein transport protein Sec 0.973 0.758 0.972 0.0
224114762 476 Sec61 transport protein [Populus trichoc 0.973 0.758 0.963 0.0
224117452 476 Sec61 transport protein [Populus trichoc 0.973 0.758 0.961 0.0
356544102 476 PREDICTED: protein transport protein Sec 0.973 0.758 0.963 0.0
356543211 476 PREDICTED: protein transport protein Sec 0.973 0.758 0.963 0.0
255562508 476 preprotein translocase secy subunit, put 0.973 0.758 0.952 0.0
359807371 476 uncharacterized protein LOC100798372 [Gl 0.973 0.758 0.961 0.0
356517046 476 PREDICTED: protein transport protein Sec 0.973 0.758 0.958 0.0
6581004 476 putative integral membrane protein [Phas 0.973 0.758 0.961 0.0
>gi|302142877|emb|CBI20172.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/361 (97%), Positives = 359/361 (99%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
           NGAQKLLGI+IA+GEAVAYVLSGMYGSV+QLGVGNAILIIVQLCFAGIIVICLDELLQKG
Sbjct: 50  NGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIVQLCFAGIIVICLDELLQKG 109

Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITR DKVRALRE
Sbjct: 110 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALRE 169

Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
           AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII
Sbjct: 170 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 229

Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
           LQSALVSNLYFISQL+YRRYSGNF VNLLGKWKESEYSGGQY+PVGG+AYYITAPSSLAD
Sbjct: 230 LQSALVSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQYIPVGGLAYYITAPSSLAD 289

Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKEL 310
           MAANPFHALFYL+FML+ACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKEL
Sbjct: 290 MAANPFHALFYLIFMLAACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKEL 349

Query: 311 NRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 370
           NRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG
Sbjct: 350 NRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 409

Query: 371 F 371
           F
Sbjct: 410 F 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461724|ref|XP_002285514.1| PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114762|ref|XP_002316850.1| Sec61 transport protein [Populus trichocarpa] gi|118487035|gb|ABK95348.1| unknown [Populus trichocarpa] gi|222859915|gb|EEE97462.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117452|ref|XP_002331716.1| Sec61 transport protein [Populus trichocarpa] gi|222874322|gb|EEF11453.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544102|ref|XP_003540494.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356543211|ref|XP_003540056.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255562508|ref|XP_002522260.1| preprotein translocase secy subunit, putative [Ricinus communis] gi|223538513|gb|EEF40118.1| preprotein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359807371|ref|NP_001241126.1| uncharacterized protein LOC100798372 [Glycine max] gi|255637958|gb|ACU19295.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356517046|ref|XP_003527201.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|6581004|gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
TAIR|locus:2040909475 AT2G34250 "AT2G34250" [Arabido 0.970 0.757 0.911 9.9e-174
TAIR|locus:2029894475 AT1G29310 "AT1G29310" [Arabido 0.970 0.757 0.911 1.6e-173
TAIR|locus:2037483475 AT1G78720 "AT1G78720" [Arabido 0.967 0.755 0.897 3e-172
DICTYBASE|DDB_G0278885475 sec61a "protein transport prot 0.967 0.755 0.733 2.9e-142
ZFIN|ZDB-GENE-020418-2476 sec61a1 "Sec61 alpha 1 subunit 0.964 0.752 0.709 1.7e-137
ZFIN|ZDB-GENE-021016-2476 sec61al2 "Sec61 alpha like 2" 0.967 0.754 0.703 2.2e-137
UNIPROTKB|Q7T277476 sec61a "Protein transport prot 0.964 0.752 0.707 7.4e-137
UNIPROTKB|Q7T278476 sec61a "Protein transport prot 0.964 0.752 0.707 7.4e-137
UNIPROTKB|Q8AY35476 sec61a "Protein transport prot 0.964 0.752 0.707 7.4e-137
UNIPROTKB|Q8AY36476 sec61a "Protein transport prot 0.964 0.752 0.707 7.4e-137
TAIR|locus:2040909 AT2G34250 "AT2G34250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1688 (599.3 bits), Expect = 9.9e-174, P = 9.9e-174
 Identities = 329/361 (91%), Positives = 352/361 (97%)

Query:    11 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
             NGAQKLLGI+IAIGEAVAYVLSGMYG V QLGVGNAILII+QL FAGIIVICLDELLQKG
Sbjct:   116 NGAQKLLGILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKG 175

Query:    71 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
             YGLGSGISLFIATNICE+IIWKAFSPTTIN+GRGAEFEGAVIALFH+LIT+++KV ALR+
Sbjct:   176 YGLGSGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQ 235

Query:   131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
             AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII
Sbjct:   236 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 295

Query:   191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
             LQSALVSNLYFISQL+YR++SGNFFVNLLG+WKESEYSG Q +PV G+AY ITAP+S +D
Sbjct:   296 LQSALVSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG-QSIPVSGLAYLITAPASFSD 354

Query:   251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKEL 310
             MAA+PFHALFY+VFML+ACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE+NLQKEL
Sbjct:   355 MAAHPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKEL 414

Query:   311 NRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 370
             NRYIPTAAAFGG+CIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE+ASELGFFG
Sbjct:   415 NRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFG 474

Query:   371 F 371
             F
Sbjct:   475 F 475
GO:0009306 "protein secretion" evidence=ISS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2029894 AT1G29310 "AT1G29310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037483 AT1G78720 "AT1G78720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278885 sec61a "protein transport protein SEC61 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020418-2 sec61a1 "Sec61 alpha 1 subunit (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021016-2 sec61al2 "Sec61 alpha like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T277 sec61a "Protein transport protein Sec61 subunit alpha" [Dissostichus mawsoni (taxid:36200)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T278 sec61a "Protein transport protein Sec61 subunit alpha" [Harpagifer antarcticus (taxid:43256)] Back     alignment and assigned GO terms
UNIPROTKB|Q8AY35 sec61a "Protein transport protein Sec61 subunit alpha" [Notothenia angustata (taxid:8210)] Back     alignment and assigned GO terms
UNIPROTKB|Q8AY36 sec61a "Protein transport protein Sec61 subunit alpha" [Pagothenia borchgrevinki (taxid:8213)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78979SC61A_YARLINo assigned EC number0.59590.93800.7388yesno
Q90YL4S61A2_DANRENo assigned EC number0.70360.96760.7542yesno
Q6FRY3SC61A_CANGANo assigned EC number0.58450.94070.7286yesno
Q7T278SC61A_HARANNo assigned EC number0.70360.96760.7542N/Ano
Q98SN9S61A1_ONCMYNo assigned EC number0.70080.96760.7542N/Ano
Q98SN8S61A2_ONCMYNo assigned EC number0.70630.96760.7542N/Ano
Q8AY34SC61A_HEMAMNo assigned EC number0.70080.96760.7542N/Ano
Q8AY32SC61A_GADOCNo assigned EC number0.70360.96760.7542N/Ano
Q8AY31SC61A_BOVVANo assigned EC number0.70360.96760.7542N/Ano
Q90ZM2S61A1_DANRENo assigned EC number0.70630.96760.7542yesno
P32915SC61A_YEASTNo assigned EC number0.56160.94070.7270yesno
Q2KHX4S61A2_BOVINNo assigned EC number0.71340.96220.75yesno
Q7T277SC61A_DISMANo assigned EC number0.70360.96760.7542N/Ano
Q5NVM7S61A2_PONABNo assigned EC number0.71070.96220.75yesno
Q8AY36SC61A_PAGBONo assigned EC number0.70360.96760.7542N/Ano
P79088SC61A_SCHPONo assigned EC number0.54640.91640.7098yesno
Q9H9S3S61A2_HUMANNo assigned EC number0.71340.96220.75yesno
P38379SC61A_PYRSANo assigned EC number0.71910.93530.7024N/Ano
Q6BN08SC61A_DEBHANo assigned EC number0.58160.93800.7265yesno
Q8AY35SC61A_NOTANNo assigned EC number0.70360.96760.7542N/Ano
Q54XK2SC61A_DICDINo assigned EC number0.73330.96760.7557yesno
Q6CPY9SC61A_KLULANo assigned EC number0.580.94070.7270yesno
Q9JLR1S61A2_MOUSENo assigned EC number0.71340.96220.75yesno
Q752H7SC61A_ASHGONo assigned EC number0.57380.93530.7229yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027847001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  •    0.812
GSVIVG00037925001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (205 aa)
   • •  0.800
GSVIVG00037758001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)
     •  0.800
GSVIVG00036059001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)
     •  0.800
GSVIVG00024600001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)
     •  0.800
GSVIVG00016972001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)
     •  0.800
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •    0.752
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •• • 0.672
GSVIVG00037864001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)
    ••• 0.671
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•       0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
PTZ00219474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 9e-96
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-73
pfam00344340 pfam00344, SecY, SecY translocase 2e-72
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 8e-63
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  642 bits (1657), Expect = 0.0
 Identities = 264/360 (73%), Positives = 317/360 (88%), Gaps = 2/360 (0%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
            GAQKLLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKG
Sbjct: 116 EGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKG 175

Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YGLGSGISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+E
Sbjct: 176 YGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKE 235

Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
           AFYR +LPN+TNLLATVL+FL+VIYFQGFRV LP++S+  RGQQ SYPIKLFYTSN+PII
Sbjct: 236 AFYRPHLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPII 295

Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
           LQ+ALVSNLYF SQ++YRR+  NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+S +D
Sbjct: 296 LQTALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPNSFSD 354

Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKE 309
           +  +P H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK+Q M M G+R++ ++ + 
Sbjct: 355 IINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRV 414

Query: 310 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 369
           LNRYIPTAA+FGGMCIGALT+LADF+GAIGSGTGILLAVTIIYQY+ETF KE+      F
Sbjct: 415 LNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYGFLF 474

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-81  Score=640.91  Aligned_cols=363  Identities=73%  Similarity=1.221  Sum_probs=324.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHHH
Q 017447            4 KIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIAT   83 (371)
Q Consensus         4 e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~a   83 (371)
                      |++|||+|++|||+|+++|++||++++..+.++...+.++...+++++||++|++++|||||++|||||+|||+||+|++
T Consensus       109 ~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~a  188 (474)
T PTZ00219        109 KEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGSGISLFIAT  188 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence            67899999999999999999999999865434433333454677889999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcceEEEE
Q 017447           84 NICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVL  163 (371)
Q Consensus        84 gI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~~~~I  163 (371)
                      |||+++||+.+++.+.+.+++.|++|.++++++...+++++.++++++++|.++|+++.++++++++.++||+|++||||
T Consensus       189 gI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l~~~~~~~~~~~i~~~vv~~~~~~~~I  268 (474)
T PTZ00219        189 NICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHLPNLTNLLATVLVFLVVIYFQGFRVDL  268 (474)
T ss_pred             HHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcccccHHHHHHHHHHHHhheeeeeeEEEE
Confidence            99999999999987766666667899998887654466778899999999999889888888999999999999999999


Q ss_pred             eeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccccccccc
Q 017447          164 PVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT  243 (371)
Q Consensus       164 Pi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi~~~~s  243 (371)
                      |++|+|++|+++++|+|+||+||||+|||||++++|+++++++++.++++..++++++|.+.+. .+++.|++|+++|++
T Consensus       269 Pi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~gl~~~l~  347 (474)
T PTZ00219        269 PLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEY-SGQSVPVGGLAYYLS  347 (474)
T ss_pred             eeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceecccc-ccccccchhHHhhcC
Confidence            9999999999999999999999999999999999999999998766555544556667753100 145679999999999


Q ss_pred             CCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhHhhHHH
Q 017447          244 APSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGG  322 (371)
Q Consensus       244 ~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~~yL~k~i~r~t~~Ga  322 (371)
                      ||+++.+.+.+|+|.++|+++++++|++|+++|.++|++||||+||||||||++|||+||| +|+|||+|+++|+|++||
T Consensus       348 ~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga  427 (474)
T PTZ00219        348 PPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGG  427 (474)
T ss_pred             CCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHH
Confidence            9998888888999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhccC
Q 017447          323 MCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF  368 (371)
Q Consensus       323 ~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~~  368 (371)
                      ++++++|++|++++..+||||+||+|||+++++|+++|||.+ -||
T Consensus       428 ~~l~~ia~lp~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~-~~~  472 (474)
T PTZ00219        428 MCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ-YGF  472 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh-ccC
Confidence            999999999999987889999999999999999999999987 443

>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
2wwb_A476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 1e-144
3dkn_A430 Sec61 In The Canine Ribosome-Channel Complex From T 8e-54
3mp7_A482 Lateral Opening Of A Translocon Upon Entry Of Prote 2e-53
1rh5_A436 The Structure Of A Protein Conducting Channel Lengt 4e-53
1rhz_A436 The Structure Of A Protein Conducting Channel Lengt 1e-52
2yxr_A426 The Plug Domain Of The Secy Protein Stablizes The C 1e-52
2yxq_A431 The Plug Domain Of The Secy Protein Stablizes The C 2e-52
3bo0_A442 Ribosome-Secy Complex Length = 442 6e-48
2ww9_A490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 3e-34
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/361 (69%), Positives = 301/361 (83%), Gaps = 2/361 (0%)
Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
           NGAQKL G+II IG+++ YV++GMYG  +++G G  +LI +QL  AG+IV+ LDELLQKG
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKG 172
Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YGLGSGISLFIATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALRE
Sbjct: 173 YGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALRE 232
Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
           AFYRQNLPN+ NL+AT+ +F +VIYFQGFRV LP++S   RGQ  +YPIKLFYTSN+PII
Sbjct: 233 AFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPII 292
Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPSSLA 249
           LQSALVSNLY ISQ++  R+SGN  V+LLG W ++   G  +  PVGG+ +Y++ P S  
Sbjct: 293 LQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFG 352
Query: 250 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKE 309
            +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRE ++  E
Sbjct: 353 SVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHE 412
Query: 310 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 369
           LNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  
Sbjct: 413 LNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSM 471
Query: 370 G 370
           G
Sbjct: 472 G 472
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
3mp7_A482 Preprotein translocase subunit SECY; protein trans 1e-122
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-120
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-117
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-103
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
 Score =  360 bits (926), Expect = e-122
 Identities = 114/359 (31%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQK 69
              Q++  + +   EA  ++L G +G     +    A+L+I+QL   GI++I LDEL+ K
Sbjct: 111 QALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK 170

Query: 70  GYGLGSGISLFIATNICENIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITRNDKVRAL 128
            +G+GSGISLFIA  + + I+ ++ +P T  N       + A++      I    K    
Sbjct: 171 -WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229

Query: 129 REAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMP 188
              +   + P++ +++AT+++F IV+YF+  RV +P+  +     +GSYPI+  Y SN+P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIP 288

Query: 189 IILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 248
           IIL  AL +N+   ++++            LG++           P+ G   Y+  P ++
Sbjct: 289 IILTFALYANIQLWARVL-----DRLGHPWLGRF-----DPTTGSPISGFVLYVIPPRNI 338

Query: 249 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANL 306
             +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L
Sbjct: 339 FSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTL 398

Query: 307 QKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 365
           +K L RYIP    +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E
Sbjct: 399 EKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
Probab=100.00  E-value=3.9e-87  Score=683.53  Aligned_cols=358  Identities=28%  Similarity=0.471  Sum_probs=315.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHH
Q 017447            3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA   82 (371)
Q Consensus         3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~   82 (371)
                      .|+||||+|++|||+|+++|++||++++.++.++  .+.++...+++++||++||+++|||||+||||||+|||+||+|+
T Consensus       109 ge~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~  186 (490)
T 2ww9_A          109 IQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINT  186 (490)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHH
Confidence            4899999999999999999999999999875443  23444567789999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccccCCCCc--ccchhHHHHHHHH-HhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcce
Q 017447           83 TNICENIIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGF  159 (371)
Q Consensus        83 agI~~~l~~~~~~~~~~~~~~~~--~~~G~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~  159 (371)
                      +|||+++|++++++.+.+.++++  |++|+++++++.+ .+.+++.+.+.++++|.++|+++.+++++++++++||+|++
T Consensus       187 agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~l~~l~~~l~vi~~vV~~q~~  266 (490)
T 2ww9_A          187 VVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSV  266 (490)
T ss_dssp             HHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccHHHHHHHHHHHHHHHheeeee
Confidence            99999999999999776666554  7899999887765 23333333344678888889988899999999999999999


Q ss_pred             EEEEeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHH----HHhhhcCCCccccccccccccccCCCccccc
Q 017447          160 RVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ----LMYRRYSGNFFVNLLGKWKESEYSGGQYVPV  235 (371)
Q Consensus       160 ~~~IPi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~----~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  235 (371)
                      ||||||||+|++|+++|+|+|+|||||||+|||||++++|.++++    +++++++++...++++.|.+.   .++++|+
T Consensus       267 ~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~~  343 (490)
T 2ww9_A          267 RVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENA---NNLLAVP  343 (490)
T ss_dssp             CEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCC---SSSSCSC
T ss_pred             EEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhcc---ccccchh
Confidence            999999999999999999999999999999999999999999888    665433333233455667532   3567899


Q ss_pred             ccccccccCCCccchhccC-chHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhh
Q 017447          236 GGIAYYITAPSSLADMAAN-PFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYI  314 (371)
Q Consensus       236 ~gi~~~~s~~~~~~~~~~~-p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg~T~~yL~k~i  314 (371)
                      +++++|++||+++.+.+.+ |+|.++|.++++++|++|||||++++++||||+||||||||++|||+|||+|+|||+|++
T Consensus       344 ~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG~T~~yL~~vi  423 (490)
T 2ww9_A          344 TFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVI  423 (490)
T ss_dssp             SSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCCCSTTHHHHHH
T ss_pred             HHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCchhHHHHHHHH
Confidence            9999999999988777788 999999999999999999999999977999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhh
Q 017447          315 PTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE  365 (371)
Q Consensus       315 ~r~t~~Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e  365 (371)
                      +|+|++||+|++++|++|++++..|||||+||+|||++|++||+++|+.++
T Consensus       424 ~rit~~Ga~~L~~lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~  474 (490)
T 2ww9_A          424 PIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQS  474 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999877899999999999999999999998766
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 371
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 2e-73
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  232 bits (592), Expect = 2e-73
 Identities = 117/355 (32%), Positives = 187/355 (52%), Gaps = 41/355 (11%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
            G QKLL II+   EAV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K 
Sbjct: 107 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 162

Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YG+GSGI LFIA  + + I   A  P           EG +    + LI           
Sbjct: 163 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQG--------- 202

Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
                N+  +  ++ T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+I
Sbjct: 203 ---VPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVI 259

Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
           L +AL +N+      +Y        + +LG ++           V GIAYY++ P  L+ 
Sbjct: 260 LAAALFANIQLWGLALY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLSS 307

Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQK 308
           + ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G R  E  ++ 
Sbjct: 308 VISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEH 367

Query: 309 ELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 363
            L RYIP         +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +ER 
Sbjct: 368 RLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7.6e-77  Score=598.30  Aligned_cols=322  Identities=36%  Similarity=0.701  Sum_probs=268.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHH
Q 017447            3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA   82 (371)
Q Consensus         3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~   82 (371)
                      .|+||||+|++|||+|+++|++||.+++.++.++.   .+....++++++|++|++++|||||+||| ||+|||+||+|+
T Consensus        99 ~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~---~~~~~~~~iv~~L~aGt~~lmwL~E~It~-~GiGnGiSLiI~  174 (422)
T d1rh5a_          99 IPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGI---LTPLLAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIA  174 (422)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSSCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccchHHHHH
Confidence            58999999999999999999999999987654322   22335678899999999999999999999 999999999999


Q ss_pred             HHHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcceEEE
Q 017447           83 TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVV  162 (371)
Q Consensus        83 agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~~~~  162 (371)
                      +|||+++||+.+++           +|.+..+.+...++            ..+++.+..++++++++.+++|+|++|||
T Consensus       175 ~gI~~~i~~~~~~~-----------~~~~~~~~~~~~~~------------~~~~~~~~~l~~~i~i~~~vv~~~~~~~~  231 (422)
T d1rh5a_         175 AGVSQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIGTIIVFLMVVYAECMRVE  231 (422)
T ss_dssp             HHHHHHHHHHHHST-----------TCHHHHHHHHTTTT------------CCCGGGTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHhccch-----------hHHHHHHHHhhhcc------------cchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999987           23443333322111            11234466677788888899999999999


Q ss_pred             EeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccc
Q 017447          163 LPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYI  242 (371)
Q Consensus       163 IPi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi~~~~  242 (371)
                      ||++|+|++++++|+|+|+||+||||+|||+|++++|+++++++++...     +++++|..       ..+++++++|+
T Consensus       232 IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~~-------~~~~~~i~~~~  299 (422)
T d1rh5a_         232 IPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYEG-------GRAVDGIAYYL  299 (422)
T ss_dssp             EECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBCS-------SSBSSSTTGGG
T ss_pred             cccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccCC-------CchHHHHHHHh
Confidence            9999999999999999999999999999999999999999999865432     24556643       24678999999


Q ss_pred             cCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHH-HHHHhhhhhHhhH
Q 017447          243 TAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQ-KELNRYIPTAAAF  320 (371)
Q Consensus       243 s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~-~yL~k~i~r~t~~  320 (371)
                      +||.+..+.+.+|.|.++|.++++++|++|+|||++++++||||+||||||||++|||+||| +|. +||+|+++|+|++
T Consensus       300 ~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~  379 (422)
T d1rh5a_         300 STPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVM  379 (422)
T ss_dssp             CCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            99988877788999999999999999999999999998899999999999999999999999 885 5699999999999


Q ss_pred             HHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhh
Q 017447          321 GGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA  363 (371)
Q Consensus       321 Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~  363 (371)
                      ||+|++++|++|++++..+||||+||+|||++|++||++|||.
T Consensus       380 Ga~~l~~ia~~p~~l~~~~gGTslLI~V~v~l~~~~qi~~e~~  422 (422)
T d1rh5a_         380 SSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT  422 (422)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999973