Citrus Sinensis ID: 017449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQSNGSASSSNGCMC
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccccEEEEEcccccccccccHHccccccccccccccccEEEEEccccccccccHHHHHHHHcHHHHcccccccccEEEEEEccEEEEccccHHHHHHHHHcccccEEEEccccccccccccEEcccEEEEEccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHcccEEEEccHHHHHHHHccccccEEEEEEcccHHHHccccccHHHcHHHHcccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEcccHcccccEEEEEccccccccHcHHHHccHHHcccccEEcccEEEEEccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHccHHHHHHHHHHHcccccEEEEccccccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHcccEEEEcccccccEEEEcccccEEEEEccHHHHHHccccHHHEHHHHHHccccEccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msslydchqegevqyqqfpskssqnrllcikgrdnhdgswnyyalawpkalpynatlmKGLTFVSynhysyeniWHGLSAMVPFVawhqknncelptrwiLYHWGelrlgmgpwlqTLMHatfdgepvierfdgindedggdpvcFEKAVVMRhneggmsreRRMEVYDLMRCKARMYCNvsldnkddnhKAVGMTLlmrtgprsftnepaiIGIFEKEcakidgcrmtvaysnnltFCEQVKLMSMTDilvsphgaqltniflmdrnssvmeffpkgwlklAGVGQYVFHWIASWsgmrhqgawrdpngenctyseddrrcmsiykngrigyneTYFSEWARNVLNEVKTMkleksqsngsasssngcmc
Flexible Loop (DISEMBL)
MSSLYDCHQEGEvqyqqfpskssqNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMrhneggmsrerrMEVYDLMRCKARMYCNvsldnkddnHKAVGMTLlmrtgprsftNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGenctyseddrrcMSIYKNGRIGYNETYFSEWARNVLNEVKTMkleksqsngsasssngcmc
Low Complexity Region (SEG)
MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKsqsngsasssngCMC
Disordered region (IsUnstruct)
*************************RLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHN********RMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEV**********************
Disordered Region (DISOPRED)
**********GEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKAR*******************TLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLN*******************NGCMC
Disordered Region (DISEMBL)
***********************QNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMK******************
Disordered Region (DISPRO)
*********EGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEK***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQSNGSASSSNGCMC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q5NDE6	576	Glycosyltransferase-like	yes	no	0.326	0.210	0.274	0.0005
Q5NDE7	578	Glycosyltransferase-like	N/A	no	0.347	0.223	0.279	0.0008

>sp|Q5NDE6|GTDC2_XENTR Glycosyltransferase-like domain-containing protein 2 OS=Xenopus tropicalis GN=gtdc2 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 185 NKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKL 244
            KD N     + L  R+  R   NE  ++    +E        +TV+  ++ +F + V+L
Sbjct: 277 TKDQNAAEAYIVLFSRSMNRLIVNEAELLLALAQE---FQMKTITVSLEDH-SFADIVRL 332

Query: 245 MSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYV-FHWIASWSGMRHQ- 302
           +S   +LVS HGAQL     + + + V+E FP G         Y  +  +++  GM  Q 
Sbjct: 333 ISNATMLVSMHGAQLITSLFLPKGAIVVELFPYG----VNPEHYTPYKTLSTLPGMELQY 388

Query: 303 GAWRDPNGENC 313
            AW++   EN 
Sbjct: 389 VAWQNTEEENT 399

Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 4EC: .EC: -EC: .EC: -

>sp|Q5NDE7|GTDC2_XENLA Glycosyltransferase-like domain-containing protein 2 OS=Xenopus laevis GN=gtdc2 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 14/143 (9%)

Query: 180 NVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC 239
           N++LD    N     + L  R+  R   NE  ++    +E        +TV+  ++ +F 
Sbjct: 275 NITLDQ---NAAEAYIVLFSRSMNRLIVNEAELLLALAQE---FQMKTITVSLEDH-SFS 327

Query: 240 EQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYV-FHWIASWSG 298
           + V+L+S   +LVS HGAQL     + + + V+E FP G         Y  +  +++  G
Sbjct: 328 DIVRLLSNATMLVSMHGAQLVTSLFLPKGAVVVELFPYG----INPEHYTPYKTLSTLPG 383

Query: 299 MRHQ-GAWRDPNGENCTYSEDDR 320
           M  Q  AW++   EN T +  DR
Sbjct: 384 MELQYVAWQNTEEEN-TITYPDR 405

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
224141189	462	predicted protein [Populus trichocarpa]	0.989	0.794	0.752	1e-171
255563228	487	conserved hypothetical protein [Ricinus	0.951	0.724	0.741	1e-162
147852146	489	hypothetical protein VITISV_038130 [Viti	0.986	0.748	0.701	1e-160
225464093	491	PREDICTED: uncharacterized protein LOC10	0.986	0.745	0.701	1e-160
225448184	476	PREDICTED: uncharacterized protein LOC10	0.981	0.764	0.699	1e-158
224095861	439	predicted protein [Populus trichocarpa]	0.946	0.799	0.686	1e-155
296088773	471	unnamed protein product [Vitis vinifera]	0.932	0.734	0.663	1e-147
297739563	483	unnamed protein product [Vitis vinifera]	0.897	0.689	0.678	1e-147
240256147	470	uncharacterized protein [Arabidopsis tha	0.981	0.774	0.659	1e-145
52354423	466	hypothetical protein AT4G33590 [Arabidop	0.962	0.766	0.656	1e-142

>gi|224141189|ref|XP_002323957.1| predicted protein [Populus trichocarpa] gi|222866959|gb|EEF04090.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/376 (75%), Positives = 321/376 (85%), Gaps = 9/376 (2%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS YD  +EG VQYQQFPS+SS+ RLLC+KG++ HDGSWN YALAWP+ALP+NATL+KG
Sbjct: 90  MSSTYDTREEGGVQYQQFPSESSKRRLLCLKGKETHDGSWNSYALAWPEALPFNATLLKG 149

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
           LTFVSYNHY Y+NIWHGLSAMVPFVAWH +N CE P+RWILYHWGELR  MGPWL+TL  
Sbjct: 150 LTFVSYNHYDYDNIWHGLSAMVPFVAWHIRNGCESPSRWILYHWGELRFEMGPWLRTLTG 209

Query: 121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
           ATF G P  E F+G+ND   G P+CFEKAVVMRHNEGGMSR+RR E YDLMRCKARMYCN
Sbjct: 210 ATFGGAPYTESFEGVND---GQPLCFEKAVVMRHNEGGMSRDRRTETYDLMRCKARMYCN 266

Query: 181 VSLDNK-----DDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNN 235
           VSL+ +           +GMTL MRTG RSFTNE A+IGIFEKECAK+DGCR+ VAYSNN
Sbjct: 267 VSLEGRIPEVNKQGLPVIGMTLFMRTGSRSFTNESAVIGIFEKECAKVDGCRLMVAYSNN 326

Query: 236 LTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIAS 295
           LTFCEQVK+MS+TDILVS HGAQLTN+FLMD+NSSVMEFFPKGWLK+AGVGQYV+HWIAS
Sbjct: 327 LTFCEQVKMMSLTDILVSTHGAQLTNMFLMDKNSSVMEFFPKGWLKVAGVGQYVYHWIAS 386

Query: 296 WSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLE 355
           WSGMRHQGAWRD NG+ C Y+EDDRRCMSIYKNG++G+NETYFSEWAR+VLNEVK  KLE
Sbjct: 387 WSGMRHQGAWRDLNGDECPYAEDDRRCMSIYKNGKVGFNETYFSEWARDVLNEVKIRKLE 446

Query: 356 KSQSNGSASSSNGCMC 371
           ++ S   AS+S  C C
Sbjct: 447 EAASKTIASTS-ACSC 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563228|ref|XP_002522617.1| conserved hypothetical protein [Ricinus communis] gi|223538093|gb|EEF39704.1| conserved hypothetical protein [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 267/360 (74%), Positives = 303/360 (84%), Gaps = 7/360 (1%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS+YD H+EGEVQYQQFPS+SS+ RLLC+KG D HDGSWN YALAWP+ LP NATL+KG
Sbjct: 117 MSSMYDTHEEGEVQYQQFPSESSKGRLLCLKGNDTHDGSWNSYALAWPETLPLNATLLKG 176

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
           LTFVSYNHY Y NIWHGLSA+VPFVAWH+ N  ELP+RWILYHWGELR  MG WL TL  
Sbjct: 177 LTFVSYNHYDYNNIWHGLSAIVPFVAWHKGNGGELPSRWILYHWGELRFNMGLWLSTLTE 236

Query: 121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
           ATF   P IE F   N+    +P+CFEKAVVMRHNEGGMS +RR+E YD MRCKAR YCN
Sbjct: 237 ATFGSPPNIEGFGWANN---NEPICFEKAVVMRHNEGGMSTDRRIETYDFMRCKARAYCN 293

Query: 181 VSLDN----KDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNL 236
           VSL+      +     +GMTL MRTGPRSF NE A+I IFEKECAK+DGCR+ VAYSNNL
Sbjct: 294 VSLEGGNMVSEKGLPVIGMTLFMRTGPRSFKNESAVIRIFEKECAKVDGCRLMVAYSNNL 353

Query: 237 TFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASW 296
           TFCEQVKLMSMTDIL+SPHGAQLTN+FLM++NSSVMEFFPKGWLKLAGVGQ+V+HWIASW
Sbjct: 354 TFCEQVKLMSMTDILISPHGAQLTNMFLMNKNSSVMEFFPKGWLKLAGVGQFVYHWIASW 413

Query: 297 SGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEK 356
           SGM+HQGAWRDP+G++C Y +DDRRCMSIYK G+IG+NET+FSEW RNVLNEVK  K E+
Sbjct: 414 SGMKHQGAWRDPDGDHCPYPDDDRRCMSIYKGGKIGFNETHFSEWGRNVLNEVKLRKAEE 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852146|emb|CAN80154.1| hypothetical protein VITISV_038130 [Vitis vinifera]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/372 (70%), Positives = 313/372 (84%), Gaps = 6/372 (1%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS++D   EGEVQYQQ+PS +S+ RLLCIKGRD HDG WN YALAW  ALP NAT++KG
Sbjct: 122 MSSMHDTRVEGEVQYQQYPSAASRGRLLCIKGRDTHDGVWNSYALAWRDALPRNATVLKG 181

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWH-QKNNCELPTRWILYHWGELRLGMGPWLQTLM 119
           LTFVSYNHY+Y+NIWHGLSAM+PFVAWH ++  C +PTRW+LYHWGELR+ MGPW+++L+
Sbjct: 182 LTFVSYNHYNYDNIWHGLSAMMPFVAWHLRQGQCAVPTRWVLYHWGELRMKMGPWVKSLI 241

Query: 120 HATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYC 179
            ATF G   IE F    DE      CFE+AVVMRHNEGGMSRERR+EVYD+MRCKAR YC
Sbjct: 242 QATFGGSVNIEEFGDSGDEG---VACFEEAVVMRHNEGGMSRERRLEVYDMMRCKARKYC 298

Query: 180 NVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC 239
           NV ++ +      +G+T+LMRTG RSF NE A++ IF++EC K++GCR+TVAYSNNLTFC
Sbjct: 299 NVRIEGR--GLAVIGLTMLMRTGARSFRNESAVVRIFQRECRKVEGCRLTVAYSNNLTFC 356

Query: 240 EQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299
           +QVKLMS+TDILVSPHGAQLTN+FLMDRNS+VMEFFPKGWLKLAGVGQYV+HWIASWSGM
Sbjct: 357 QQVKLMSLTDILVSPHGAQLTNMFLMDRNSNVMEFFPKGWLKLAGVGQYVYHWIASWSGM 416

Query: 300 RHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQS 359
           +H+GAWRDPNG++C Y EDDRRCMSIYKNGRIGYN+T+F EWARN+L EVKT K+E++ +
Sbjct: 417 KHEGAWRDPNGDDCPYPEDDRRCMSIYKNGRIGYNDTFFEEWARNILVEVKTRKMEEALN 476

Query: 360 NGSASSSNGCMC 371
             +A    GC C
Sbjct: 477 KNNAVVLGGCAC 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464093|ref|XP_002269775.1| PREDICTED: uncharacterized protein LOC100267753 [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/372 (70%), Positives = 313/372 (84%), Gaps = 6/372 (1%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS++D   EGEVQYQQ+PS +S+ RLLCIKGRD HDG WN YALAW  ALP NAT++KG
Sbjct: 124 MSSMHDTRVEGEVQYQQYPSAASRGRLLCIKGRDTHDGVWNSYALAWRDALPRNATVLKG 183

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWH-QKNNCELPTRWILYHWGELRLGMGPWLQTLM 119
           LTFVSYNHY+Y+NIWHGLSAM+PFVAWH ++  C +PTRW+LYHWGELR+ MGPW+++L+
Sbjct: 184 LTFVSYNHYNYDNIWHGLSAMMPFVAWHLRQGQCAVPTRWVLYHWGELRMKMGPWVKSLI 243

Query: 120 HATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYC 179
            ATF G   IE F    DE      CFE+AVVMRHNEGGMSRERR+EVYD+MRCKAR YC
Sbjct: 244 QATFGGSVNIEEFGDSGDEG---VACFEEAVVMRHNEGGMSRERRLEVYDMMRCKARKYC 300

Query: 180 NVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC 239
           NV ++ +      +G+T+LMRTG RSF NE A++ IF++EC K++GCR+TVAYSNNLTFC
Sbjct: 301 NVRIEGR--GLAVIGLTMLMRTGARSFRNESAVVRIFQRECRKVEGCRLTVAYSNNLTFC 358

Query: 240 EQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299
           +QVKLMS+TDILVSPHGAQLTN+FLMDRNS+VMEFFPKGWLKLAGVGQYV+HWIASWSGM
Sbjct: 359 QQVKLMSLTDILVSPHGAQLTNMFLMDRNSNVMEFFPKGWLKLAGVGQYVYHWIASWSGM 418

Query: 300 RHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQS 359
           +H+GAWRDPNG++C Y EDDRRCMSIYKNGRIGYN+T+F EWARN+L EVKT K+E++ +
Sbjct: 419 KHEGAWRDPNGDDCPYPEDDRRCMSIYKNGRIGYNDTFFEEWARNILVEVKTRKMEEALN 478

Query: 360 NGSASSSNGCMC 371
             +A    GC C
Sbjct: 479 KNNAVVLGGCAC 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448184|ref|XP_002264959.1| PREDICTED: uncharacterized protein LOC100245802 [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/373 (69%), Positives = 312/373 (83%), Gaps = 9/373 (2%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSSLYD H EGEVQYQQ+PS +S+ RLLCIKGRD HDG+ N YALAWP ALP NAT++ G
Sbjct: 110 MSSLYDTHVEGEVQYQQYPSAASRGRLLCIKGRDTHDGARNSYALAWPNALPRNATVLTG 169

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKN-NCELPTRWILYHWGELRLGMGPWLQTLM 119
           LTFVSYNHY+Y+NIWHGLSAMVPFVAWH ++  C +P RW+LYHWGELR+ MGPW+++LM
Sbjct: 170 LTFVSYNHYNYDNIWHGLSAMVPFVAWHLRDGQCAVPARWVLYHWGELRIKMGPWVKSLM 229

Query: 120 HATFDGEPVIERFDGINDEDGGDPV-CFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMY 178
            ATF G   IE F      D GD V CFE+AVV RHNEGGMSRERR+EVY++MRCKAR Y
Sbjct: 230 QATFGGSVNIEEFG-----DSGDGVACFEEAVVTRHNEGGMSRERRLEVYNMMRCKAREY 284

Query: 179 CNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTF 238
           CNV ++ +      +G+T+LMRTG RSF NE A++GIF++EC KI+GCR+TVAY++NLTF
Sbjct: 285 CNVRIEGR--GLTVIGLTMLMRTGARSFRNESAVVGIFQRECGKIEGCRLTVAYADNLTF 342

Query: 239 CEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSG 298
           C+QVKLMS+TDILVSPHGAQLTN FLMD+NSSVMEFFPKGWLKLAGVGQYV+HWIASWSG
Sbjct: 343 CQQVKLMSLTDILVSPHGAQLTNTFLMDKNSSVMEFFPKGWLKLAGVGQYVYHWIASWSG 402

Query: 299 MRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQ 358
           M+H+GAWRDPNG++C Y EDD RCM IYKNGRIGYN+T+F EWARNVL +VKT K+E++ 
Sbjct: 403 MKHEGAWRDPNGDDCPYPEDDHRCMPIYKNGRIGYNDTFFEEWARNVLMKVKTRKMEEAL 462

Query: 359 SNGSASSSNGCMC 371
           +  +    +GC C
Sbjct: 463 NKNTTLVLSGCAC 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095861|ref|XP_002310496.1| predicted protein [Populus trichocarpa] gi|222853399|gb|EEE90946.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/376 (68%), Positives = 302/376 (80%), Gaps = 25/376 (6%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS++D  +EGEVQYQQFPS+SS+ RLLC+KG++ HDGSWN YALAWP+ALP NATL+KG
Sbjct: 84  MSSMHDTREEGEVQYQQFPSESSKGRLLCLKGKETHDGSWNSYALAWPEALPINATLLKG 143

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
           LTFVSYNHY+Y+NIWHGLSAMVPFV+WH++N CE P+RWILYHWGELR  M PWL+ L+ 
Sbjct: 144 LTFVSYNHYNYDNIWHGLSAMVPFVSWHRRNGCESPSRWILYHWGELRFNMSPWLKILIE 203

Query: 121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
           ATF G P IE+F+G+ND                    GMSR+  +E YDLMRCKA++YCN
Sbjct: 204 ATFGGAPYIEKFEGVNDR-------------------GMSRDTMIETYDLMRCKAKVYCN 244

Query: 181 VSLDNK-----DDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNN 235
           +SL+ +           +GMTL MRTG RSF NE A+IGIFEKECAKIDGCR+ VAYSNN
Sbjct: 245 LSLEGRIAEVNKQGLPVIGMTLFMRTGTRSFKNESAVIGIFEKECAKIDGCRLMVAYSNN 304

Query: 236 LTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIAS 295
           LTFCEQVKLMS+TDIL S HGAQLTN+FLMD+NSSVMEFFPKGWLKLAGVGQYVFHW+A 
Sbjct: 305 LTFCEQVKLMSLTDILASAHGAQLTNLFLMDKNSSVMEFFPKGWLKLAGVGQYVFHWLAG 364

Query: 296 WSGMRHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLE 355
           WSGMRHQGAWRDPNG+ C Y EDDRRCM+IYK G+IG NETYF+EWA+ VLNEVK  KLE
Sbjct: 365 WSGMRHQGAWRDPNGDECPYGEDDRRCMTIYKTGKIGLNETYFTEWAKKVLNEVKIKKLE 424

Query: 356 KSQSNGSASSSNGCMC 371
            + +  +AS+S  C C
Sbjct: 425 VAANKTNASASI-CAC 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088773|emb|CBI38223.3| unnamed protein product [Vitis vinifera]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/372 (66%), Positives = 298/372 (80%), Gaps = 26/372 (6%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSS++D   EGEVQYQQ+PS +S+ RLLCIKGRD HDG WN YALAW  ALP NAT++KG
Sbjct: 124 MSSMHDTRVEGEVQYQQYPSAASRGRLLCIKGRDTHDGVWNSYALAWRDALPRNATVLKG 183

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWH-QKNNCELPTRWILYHWGELRLGMGPWLQTLM 119
           LTFVSYNHY+Y+NIWHGLSAM+PFVAWH ++  C +PTRW+LYHWGELR+ MGPW+++L+
Sbjct: 184 LTFVSYNHYNYDNIWHGLSAMMPFVAWHLRQGQCAVPTRWVLYHWGELRMKMGPWVKSLI 243

Query: 120 HATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYC 179
            ATF G   IE F      D GD             EG     RR+EVYD+MRCKAR YC
Sbjct: 244 QATFGGSVNIEEFG-----DSGD-------------EG-----RRLEVYDMMRCKARKYC 280

Query: 180 NVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC 239
           NV ++ +      +G+T+LMRTG RSF NE A++ IF++EC K++GCR+TVAYSNNLTFC
Sbjct: 281 NVRIEGR--GLAVIGLTMLMRTGARSFRNESAVVRIFQRECRKVEGCRLTVAYSNNLTFC 338

Query: 240 EQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299
           +QVKLMS+TDILVSPHGAQLTN+FLMDRNS+VMEFFPKGWLKLAGVGQYV+HWIASWSGM
Sbjct: 339 QQVKLMSLTDILVSPHGAQLTNMFLMDRNSNVMEFFPKGWLKLAGVGQYVYHWIASWSGM 398

Query: 300 RHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQS 359
           +H+GAWRDPNG++C Y EDDRRCMSIYKNGRIGYN+T+F EWARN+L EVKT K+E++ +
Sbjct: 399 KHEGAWRDPNGDDCPYPEDDRRCMSIYKNGRIGYNDTFFEEWARNILVEVKTRKMEEALN 458

Query: 360 NGSASSSNGCMC 371
             +A    GC C
Sbjct: 459 KNNAVVLGGCAC 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739563|emb|CBI29745.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 243/358 (67%), Positives = 291/358 (81%), Gaps = 25/358 (6%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSSLYD H EGEVQYQQ+PS +S+ RLLCIKGRD HDG+ N YALAWP ALP NAT++ G
Sbjct: 137 MSSLYDTHVEGEVQYQQYPSAASRGRLLCIKGRDTHDGARNSYALAWPNALPRNATVLTG 196

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKN-NCELPTRWILYHWGELRLGMGPWLQTLM 119
           LTFVSYNHY+Y+NIWHGLSAMVPFVAWH ++  C +P RW+LYHWGELR+ MGPW+++LM
Sbjct: 197 LTFVSYNHYNYDNIWHGLSAMVPFVAWHLRDGQCAVPARWVLYHWGELRIKMGPWVKSLM 256

Query: 120 HATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYC 179
            ATF G   IE F                       + GMSRERR+EVY++MRCKAR YC
Sbjct: 257 QATFGGSVNIEEF----------------------GDSGMSRERRLEVYNMMRCKAREYC 294

Query: 180 NVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC 239
           NV ++ +      +G+T+LMRTG RSF NE A++GIF++EC KI+GCR+TVAY++NLTFC
Sbjct: 295 NVRIEGR--GLTVIGLTMLMRTGARSFRNESAVVGIFQRECGKIEGCRLTVAYADNLTFC 352

Query: 240 EQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299
           +QVKLMS+TDILVSPHGAQLTN FLMD+NSSVMEFFPKGWLKLAGVGQYV+HWIASWSGM
Sbjct: 353 QQVKLMSLTDILVSPHGAQLTNTFLMDKNSSVMEFFPKGWLKLAGVGQYVYHWIASWSGM 412

Query: 300 RHQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKS 357
           +H+GAWRDPNG++C Y EDD RCM IYKNGRIGYN+T+F EWARNVL +VKT K+E++
Sbjct: 413 KHEGAWRDPNGDDCPYPEDDHRCMPIYKNGRIGYNDTFFEEWARNVLMKVKTRKMEEA 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256147|ref|NP_195086.4| uncharacterized protein [Arabidopsis thaliana] gi|26451329|dbj|BAC42765.1| unknown protein [Arabidopsis thaliana] gi|332660852|gb|AEE86252.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/373 (65%), Positives = 289/373 (77%), Gaps = 9/373 (2%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSSLYD   +GEVQYQ+FPS+SS+ RLLC+KG D HDGSWNYYALAWP+ALP NA+L +G
Sbjct: 105 MSSLYDNQTKGEVQYQEFPSESSKGRLLCLKGVDEHDGSWNYYALAWPQALPVNASLQEG 164

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
           LTFVSYNHY Y N+WHGLSAMVPFVAW  ++ CE P RW+LYHWGELR  MG WL  ++ 
Sbjct: 165 LTFVSYNHYDYGNMWHGLSAMVPFVAWSLRHQCENPQRWVLYHWGELRFKMGNWLNEIIT 224

Query: 121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
           AT+       RF      D   PVCFEKAVVMRHNEGGMSRERRMEV+DL+RCKAR YCN
Sbjct: 225 ATYGQNTEFLRF-----RDKNRPVCFEKAVVMRHNEGGMSRERRMEVFDLIRCKARHYCN 279

Query: 181 VSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCE 240
           +SL   + +   +GMTLLMRTGPRSF NE A+I IF++EC  ++GC + V+YSNNLTFCE
Sbjct: 280 ISLS--ETSKSRIGMTLLMRTGPRSFKNESAVIDIFKRECKNVEGCELKVSYSNNLTFCE 337

Query: 241 QVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMR 300
           QV+LM MTD+LVSPHGAQLTN+ LMDRNSSVMEF PKGW KLAGVGQ V+ W   WSGMR
Sbjct: 338 QVELMRMTDVLVSPHGAQLTNLVLMDRNSSVMEFLPKGWRKLAGVGQLVYQWGTRWSGMR 397

Query: 301 HQGAWRDPNGENCTYSEDDRRCM-SIYKNGRIGYNETYFSEWARNVLNEVKTMKLEKSQS 359
           H+G+W DP+GE C + + DRRCM S+YKNGRIGYNETYF EWA++VL + K  K+     
Sbjct: 398 HEGSWHDPDGEICQFPDTDRRCMSSVYKNGRIGYNETYFGEWAKSVLGKFKERKMANVVG 457

Query: 360 NG-SASSSNGCMC 371
              S  S +GC C
Sbjct: 458 RKHSYGSLDGCWC 470

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52354423|gb|AAU44532.1| hypothetical protein AT4G33590 [Arabidopsis thaliana]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/367 (65%), Positives = 286/367 (77%), Gaps = 10/367 (2%)

Query: 1   MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
           MSSLYD   +GE QYQ+FPS SS+ RLLC+KG D HDGSWN YALAWP+ALP NA L  G
Sbjct: 102 MSSLYDNQTKGEAQYQEFPSDSSKGRLLCLKGVDEHDGSWNSYALAWPEALPTNAILQDG 161

Query: 61  LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
           LTFVSYN Y Y N+WHGL+A+VPF+AW  +N CE P +W+LYHWGELR GMG WL  ++ 
Sbjct: 162 LTFVSYNQYDYGNLWHGLTAVVPFIAWSLRNQCEKPQKWVLYHWGELRFGMGHWLSEIVT 221

Query: 121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
           AT+  EP   RF      D   PVCFEKAVVMRHNEGGMSRERRME +DL+RCKAR YCN
Sbjct: 222 ATYGQEPDFLRF-----VDDDKPVCFEKAVVMRHNEGGMSRERRMEAFDLIRCKARNYCN 276

Query: 181 VSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCE 240
           +S  +   +   +GMTLL+RTG RSF NE  +I +F+KEC ++DGC ++V+YSNNL+FCE
Sbjct: 277 IS--SSVASKPRIGMTLLLRTGARSFRNESMVIDVFKKECKRVDGCEISVSYSNNLSFCE 334

Query: 241 QVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMR 300
           QV+LM  TD+LVSPHGAQLTN+FLMD+NSSVMEFFPKGWLKLAGVGQ VF W A+WSGMR
Sbjct: 335 QVELMKKTDVLVSPHGAQLTNLFLMDKNSSVMEFFPKGWLKLAGVGQLVFQWGANWSGMR 394

Query: 301 HQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNE--VKTMKLEKSQ 358
           H+G+W DP GE C + + DRRCMSIYKN  IGYNETYF EWAR VL +  ++ MK E ++
Sbjct: 395 HEGSWHDPVGEICXFPDTDRRCMSIYKNAMIGYNETYFGEWARRVLGKFSIREMK-ELAE 453

Query: 359 SNGSASS 365
            N S SS
Sbjct: 454 CNHSNSS 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2134248	470	AT4G33600 "AT4G33600" [Arabido	0.935	0.738	0.678	5.8e-137
TAIR|locus:2134233	466	AT4G33590 [Arabidopsis thalian	0.932	0.742	0.664	2.6e-134

TAIR|locus:2134248 AT4G33600 "AT4G33600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 241/355 (67%), Positives = 283/355 (79%)

Query:     1 MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
             MSSLYD   +GEVQYQ+FPS+SS+ RLLC+KG D HDGSWNYYALAWP+ALP NA+L +G
Sbjct:   105 MSSLYDNQTKGEVQYQEFPSESSKGRLLCLKGVDEHDGSWNYYALAWPQALPVNASLQEG 164

Query:    61 LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
             LTFVSYNHY Y N+WHGLSAMVPFVAW  ++ CE P RW+LYHWGELR  MG WL  ++ 
Sbjct:   165 LTFVSYNHYDYGNMWHGLSAMVPFVAWSLRHQCENPQRWVLYHWGELRFKMGNWLNEIIT 224

Query:   121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
             AT+       RF      D   PVCFEKAVVMRHNEGGMSRERRMEV+DL+RCKAR YCN
Sbjct:   225 ATYGQNTEFLRF-----RDKNRPVCFEKAVVMRHNEGGMSRERRMEVFDLIRCKARHYCN 279

Query:   181 VSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCE 240
             +SL   + +   +GMTLLMRTGPRSF NE A+I IF++EC  ++GC + V+YSNNLTFCE
Sbjct:   280 ISLS--ETSKSRIGMTLLMRTGPRSFKNESAVIDIFKRECKNVEGCELKVSYSNNLTFCE 337

Query:   241 QVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMR 300
             QV+LM MTD+LVSPHGAQLTN+ LMDRNSSVMEF PKGW KLAGVGQ V+ W   WSGMR
Sbjct:   338 QVELMRMTDVLVSPHGAQLTNLVLMDRNSSVMEFLPKGWRKLAGVGQLVYQWGTRWSGMR 397

Query:   301 HQGAWRDPNGENCTYSEDDRRCMS-IYKNGRIGYNETYFSEWARNVLNEVKTMKL 354
             H+G+W DP+GE C + + DRRCMS +YKNGRIGYNETYF EWA++VL + K  K+
Sbjct:   398 HEGSWHDPDGEICQFPDTDRRCMSSVYKNGRIGYNETYFGEWAKSVLGKFKERKM 452

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134233 AT4G33590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 236/355 (66%), Positives = 282/355 (79%)

Query:     1 MSSLYDCHQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKG 60
             MSSLYD   +GE QYQ+FPS SS+ RLLC+KG D HDGSWN YALAWP+ALP NA L  G
Sbjct:   102 MSSLYDNQTKGEAQYQEFPSDSSKGRLLCLKGVDEHDGSWNSYALAWPEALPTNAILQDG 161

Query:    61 LTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMH 120
             LTFVSYN Y Y N+WHGL+A+VPF+AW  +N CE P +W+LYHWGELR GMG WL  ++ 
Sbjct:   162 LTFVSYNQYDYGNLWHGLTAVVPFIAWSLRNQCEKPQKWVLYHWGELRFGMGHWLSEIVT 221

Query:   121 ATFDGEPVIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKARMYCN 180
             AT+  EP   RF  ++D+    PVCFEKAVVMRHNEGGMSRERRME +DL+RCKAR YCN
Sbjct:   222 ATYGQEPDFLRF--VDDDK---PVCFEKAVVMRHNEGGMSRERRMEAFDLIRCKARNYCN 276

Query:   181 VSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCE 240
             +S  +   +   +GMTLL+RTG RSF NE  +I +F+KEC ++DGC ++V+YSNNL+FCE
Sbjct:   277 IS--SSVASKPRIGMTLLLRTGARSFRNESMVIDVFKKECKRVDGCEISVSYSNNLSFCE 334

Query:   241 QVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMR 300
             QV+LM  TD+LVSPHGAQLTN+FLMD+NSSVMEFFPKGWLKLAGVGQ VF W A+WSGMR
Sbjct:   335 QVELMKKTDVLVSPHGAQLTNLFLMDKNSSVMEFFPKGWLKLAGVGQLVFQWGANWSGMR 394

Query:   301 HQGAWRDPNGENCTYSEDDRRCMSIYKNGRIGYNETYFSEWARNVLNE--VKTMK 353
             H+G+W DP GE C + + DRRCMSIYKN  IGYNETYF EWAR VL +  ++ MK
Sbjct:   395 HEGSWHDPVGEICQFPDTDRRCMSIYKNAMIGYNETYFGEWARRVLGKFSIREMK 449


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      371       359   0.00081  117 3  11 22  0.36    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  631 (67 KB)
  Total size of DFA:  310 KB (2157 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.07u 0.06s 26.13t   Elapsed:  00:00:02
  Total cpu time:  26.07u 0.06s 26.13t   Elapsed:  00:00:02
  Start:  Sat May 11 12:41:42 2013   End:  Sat May 11 12:41:44 2013

GO:0005576 "extracellular region" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00170092 hypothetical protein (462 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam04577	206	pfam04577, DUF563, Protein of unknown function (DU	1e-16

>gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563)

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 34/180 (18%)

Query: 131 RFDGINDE----DGGDPVCFEKAVVMRHNEGGMSRERRM--EVYDLMRCKARMYCNVSLD 184
              GI ++       +PV  E+ +V             +   + DL+R            
Sbjct: 45  ELLGIPEDRIVLKYDEPVRVERLIVPSPPFPAGGYFGPLLPRLRDLLR------------ 92

Query: 185 NKDDNHKAVGMTLLM---RTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQ 241
            + +  K     + +   + G R   NE  +     K           +     L+  EQ
Sbjct: 93  ERFNLSKIKPRKVYISRKKAGRRRILNEDELEEALPK-------YGFEIVDPETLSLEEQ 145

Query: 242 VKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRH 301
           VKL S   ++V PHG+ LTN+  M   + V+E  P   L         F  +A+  G+ +
Sbjct: 146 VKLFSSAKVIVGPHGSALTNLIFMPPGTGVVELVPPNRL------DPSFRNLAALLGLDY 199

Family of uncharacterized proteins. Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PF04577	206	DUF563: Protein of unknown function (DUF563); Inte	99.96
KOG4698	475	consensus Uncharacterized conserved protein [Funct	99.93
COG4421	368	Capsular polysaccharide biosynthesis protein [Carb	99.75
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.08
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	83.81

>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61

Probab=99.96  E-value=9.9e-28  Score=218.54  Aligned_cols=201  Identities=24%  Similarity=0.396  Sum_probs=146.4

Q ss_pred             CCcchhhhhhHH-hhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcC-CCceeeeccCcccCCCCCcEEecee
Q 017449           72 ENIWHGLSAMVP-FVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFD-GEPVIERFDGINDEDGGDPVCFEKA  149 (371)
Q Consensus        72 ~N~wH~~sd~vp-f~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~-~~~~i~~~d~v~~~~~~~~vCFe~a  149 (371)
                      .|++|.+.|++| +..+....  ..++..++...   .....+|..+.++. ++ ....+. .      ..++++||+++
T Consensus         1 ~~~gH~l~d~l~~l~~~~~~~--~~~~~~~l~~~---~~~~~~~~~~~l~~-lg~~~~~i~-~------~~~~~~~~~~l   67 (206)
T PF04577_consen    1 NNFGHFLIDFLPRLWYLPQYI--PDSDIIILVPD---DFDNPPFIREILEL-LGIPENRIK-I------DSDEPVCFERL   67 (206)
T ss_pred             CCCcEEHHHHHHHHHHHHHHC--CCCCeEEEEcC---CccccHHHHHHHHH-cCCCccEEE-E------cCCCeEEECEE
Confidence            378899999987 43444322  12222223221   12456888888843 33 323441 1      23689999999


Q ss_pred             EEeecCCCCCChhchhhHhHHHHHHHHHHcCCCCCCCCCCCCeeEEEEEEc--CCCCcccCHHHHHHHHHhhccccCCce
Q 017449          150 VVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMR--TGPRSFTNEPAIIGIFEKECAKIDGCR  227 (371)
Q Consensus       150 iv~~~~~gg~~~~~~~~~~d~~r~~a~~~~~~~~~~~~~~~~~~rv~~i~R--~~~R~i~Ne~ev~~~l~~~~~~~~g~~  227 (371)
                      ++..........  .......+|..+++.++++..    .+  +|++|++|  ++.|+|.|++||++.+++       ++
T Consensus        68 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~--p~i~~i~R~~~~~R~i~Ne~el~~~l~~-------~~  132 (206)
T PF04577_consen   68 IVPSPPYSPSDF--NPSFFPALRDRIRRKLNLPPP----KR--PRILYISRRKSGSRRILNEDELLEILKK-------YG  132 (206)
T ss_pred             EEeCCCccccCc--CchHHHHHHHHHHHHhCCccc----CC--CeEEEEecCCCCCCcCcCHHHHHHHHhh-------CC
Confidence            998644321111  112334777888888877642    22  38999999  678999999999988875       46


Q ss_pred             EEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEeeCccccccccchhhHHHHHhhcCCccccccc
Q 017449          228 MTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWR  306 (371)
Q Consensus       228 ~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl~h~~~w~  306 (371)
                      |++++++++|+.||+++|++||||||+|||||+|++|||||+.||||+|+.+..      ..|..+|...|+.|+..+.
T Consensus       133 ~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~~~------~~~~~~a~~~~~~y~~v~~  205 (206)
T PF04577_consen  133 FEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNYYN------RHYRNLAQALGIHYYAVYG  205 (206)
T ss_pred             eEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCCCC------HHHHHHHHHcCCeEEEEeC
Confidence            889999999999999999999999999999999999999999999999887765      3599999999998876543

Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups

>KOG4698 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=1.6e-25  Score=225.54  Aligned_cols=271  Identities=17%  Similarity=0.214  Sum_probs=176.4

Q ss_pred             EEEEeccCCCCCcchhhhhh-HH-hhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcCCCceeeeccCcccCC
Q 017449           62 TFVSYNHYSYENIWHGLSAM-VP-FVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDED  139 (371)
Q Consensus        62 tfV~~~~~~~~N~wH~~sd~-vp-f~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~~~~~i~~~d~v~~~~  139 (371)
                      ++|..++.=.+|.||++.|. +| |++.+.    ..+++.+++    +.....+||..++.-++++   +.+++.++.+.
T Consensus       170 a~vfs~Gg~tgn~yhdf~d~~ipL~it~~~----~~~n~ev~~----li~~~~~ww~~kf~Dvv~~---lSn~~~v~~~~  238 (475)
T KOG4698|consen  170 AIVFSTGGYTGNEYHDFNDGIIPLFITEAE----LRFNKEVQF----LITETHSWWDMKFGDVVRQ---LSNYPVVDFDA  238 (475)
T ss_pred             hheeecCCcchhhHHHHHhhhhhhhcccch----hcccccEEE----EEEEcchhhhhhHHHHHHh---cCCCceEEecC
Confidence            35555664559999999996 57 666551    233343333    3566778988888765544   22222333468


Q ss_pred             CCCcEEeceeEEee--cCCCCCChhch-------hhHhHHHHHHHHHH----cCCCCCCCCCCCCeeEEEEEEcCCCCcc
Q 017449          140 GGDPVCFEKAVVMR--HNEGGMSRERR-------MEVYDLMRCKARMY----CNVSLDNKDDNHKAVGMTLLMRTGPRSF  206 (371)
Q Consensus       140 ~~~~vCFe~aiv~~--~~~gg~~~~~~-------~~~~d~~r~~a~~~----~~~~~~~~~~~~~~~rv~~i~R~~~R~i  206 (371)
                      +.+++||+.++++.  |.+-+..+...       .-.|..+-..++..    .+++...   ...++|+++++|.++|+|
T Consensus       239 ~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~---~~kkpri~~lsR~~~r~I  315 (475)
T KOG4698|consen  239 ELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPE---PWKKPRITILSRAGSRAI  315 (475)
T ss_pred             CceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcC---hhhCCceEEEecccchhh
Confidence            99999999999994  55433332211       11222233333332    2333222   223578999999999999


Q ss_pred             cCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEeeCc---cc---
Q 017449          207 TNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKG---WL---  280 (371)
Q Consensus       207 ~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P~~---~~---  280 (371)
                      +|++|+.++++.     .|+++.+++.+..++..|.++.+++|||||+|||||||++|+||++.+|||.|.|   |.   
T Consensus       316 lne~el~~~~~~-----~gf~v~~~~~~~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~  390 (475)
T KOG4698|consen  316 LNEDELPRMLED-----IGFEVSVLRPDRTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKL  390 (475)
T ss_pred             hcchhhhHHHHh-----CCCceEEecccccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhh
Confidence            999999999987     5788999888889999999999999999999999999999999999999999987   22   


Q ss_pred             ---cccccch---hhHHHHHhhcCCcccccccCCCCCCCCCC---CCc--cccccccccceeecccchHHHHHHHHHHHH
Q 017449          281 ---KLAGVGQ---YVFHWIASWSGMRHQGAWRDPNGENCTYS---EDD--RRCMSIYKNGRIGYNETYFSEWARNVLNEV  349 (371)
Q Consensus       281 ---~~a~~~~---~~Y~~lA~~~Gl~h~~~w~d~~~~~c~~~---~~~--~~c~~~~k~~~v~in~~~f~~~l~~vl~~~  349 (371)
                         .++....   ..|+..+..+++.|.+.-.++..++ |+.   .++  ..-..++..|+|+++..+|.+.+-+.+...
T Consensus       391 a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~d-p~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~  469 (475)
T KOG4698|consen  391 ARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFD-PISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE  469 (475)
T ss_pred             hhccccceeccccceeEEeecccceeeeccCCCceecc-cceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence               1111110   1233334444444433222221111 111   122  222247778999999999988887776665


Q ss_pred             HHh
Q 017449          350 KTM  352 (371)
Q Consensus       350 ~~~  352 (371)
                      ..+
T Consensus       470 ~~~  472 (475)
T KOG4698|consen  470 ITQ  472 (475)
T ss_pred             HHh
Confidence            544

>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=6.1e-17  Score=156.47  Aligned_cols=196  Identities=17%  Similarity=0.178  Sum_probs=132.7

Q ss_pred             CccCCCceeeecCeEEEEeccCCCCCcchhhhhhHHhhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcCCCc
Q 017449           48 PKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEP  127 (371)
Q Consensus        48 ~~a~p~~~~~~~g~tfV~~~~~~~~N~wH~~sd~vpf~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~~~~  127 (371)
                      |...|++++.++|-..+..-. +-.|+=|.+.+++|.+.--..-+ ...+-.++      -..+.+|..+++. +++...
T Consensus       109 Rl~~~edAp~L~r~~v~~~~~-~~~~Yghflle~Lp~l~~i~~l~-i~~~~pLl------~P~~~~wqadll~-m~~~~~  179 (368)
T COG4421         109 RLKRPEDAPRLPRGAVFKEWG-FSFEYGHFLLENLPYLWQIKSLG-ILSDPPLL------YPRLTEWQADLLF-MAGPDC  179 (368)
T ss_pred             eecCCcCCCcCCCcceecccc-cccccchhHHhhhHHHHHHhhhc-ccccCccc------CCcchHHHHhHHh-hcCCCC
Confidence            455688888999887554222 23677789999998544221111 11111111      2345569988885 444435


Q ss_pred             eeeeccCcccCCCCCcEEeceeEEeecCCCCCChhchhhHhHHHHHHHH-HHcCCCCCCCCCCCCeeEEEEEEcC--CCC
Q 017449          128 VIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKAR-MYCNVSLDNKDDNHKAVGMTLLMRT--GPR  204 (371)
Q Consensus       128 ~i~~~d~v~~~~~~~~vCFe~aiv~~~~~gg~~~~~~~~~~d~~r~~a~-~~~~~~~~~~~~~~~~~rv~~i~R~--~~R  204 (371)
                      ++...        ...||-..+++...+.    + +..+  ++++.... .++....    .+  ..+.+|+||+  ..|
T Consensus       180 ~ii~~--------~p~V~~~~avl~~~~s----~-~~~h--a~l~~~~eR~~~~~~~----~~--~adkiYVSR~~qS~R  238 (368)
T COG4421         180 PIIAT--------APAVPLGPAVLPVSGS----P-RYTH--ALLAWKDERVIAIKGK----GK--VADKIYVSRKAQSMR  238 (368)
T ss_pred             ceeec--------ccceeecccccCCCCC----c-hhhh--HHHHHHhhhhhcccCC----CC--CcceEEEechhhHHH
Confidence            56543        6778888888774332    1 1112  33332222 2222221    12  2356799996  469


Q ss_pred             cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEee--Cccc
Q 017449          205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFP--KGWL  280 (371)
Q Consensus       205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P--~~~~  280 (371)
                      +++||+||...+++.       ++++|.+|+++..||++||++|.||+|+||+||.|.+|+++|+.||||-|  .+++
T Consensus       239 ~lvnE~evE~~~q~~-------G~~IVrPEtl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~~~  309 (368)
T COG4421         239 VLVNEEEVERLLQRS-------GLTIVRPETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTNFR  309 (368)
T ss_pred             HhhCHHHHHHHHHhc-------CcEEEechhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCcch
Confidence            999999999999873       79999999999999999999999999999999999999999999999999  5555

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.08  E-value=6.3  Score=38.63  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449          176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH  255 (371)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H  255 (371)
                      +++++++..    +   -+++++.|...+    -.-+...|..     .++.+.+....+-++.   +.+.+|||+|+.=
T Consensus       143 l~~~~i~l~----G---k~V~ViGrs~~v----Grpla~lL~~-----~~atVtv~hs~t~~L~---~~~~~ADIvI~Av  203 (279)
T PRK14178        143 LHEYKISIA----G---KRAVVVGRSIDV----GRPMAALLLN-----ADATVTICHSKTENLK---AELRQADILVSAA  203 (279)
T ss_pred             HHHcCCCCC----C---CEEEEECCCccc----cHHHHHHHHh-----CCCeeEEEecChhHHH---HHHhhCCEEEECC
Confidence            345677653    2   268999987521    1233344443     4567777765554444   3667999999999


Q ss_pred             h-hhhhhhhccCCCcEEEEEeeC
Q 017449          256 G-AQLTNIFLMDRNSSVMEFFPK  277 (371)
Q Consensus       256 G-AgLtN~lFm~pgs~viEi~P~  277 (371)
                      | +++..-=+.+||++||.+--.
T Consensus       204 gk~~lv~~~~vk~GavVIDVgi~  226 (279)
T PRK14178        204 GKAGFITPDMVKPGATVIDVGIN  226 (279)
T ss_pred             CcccccCHHHcCCCcEEEEeecc
Confidence            9 888777778999999998643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=83.81  E-value=8  Score=33.89  Aligned_cols=80  Identities=13%  Similarity=0.146  Sum_probs=53.7

Q ss_pred             HHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeech
Q 017449          177 MYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHG  256 (371)
Q Consensus       177 ~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HG  256 (371)
                      ++++++..    +   -+++++.|+.    ..-..+...|.+     .|..+.+....+-++.|   .+.+|||+|..=|
T Consensus        20 ~~~~~~~~----g---k~v~VvGrs~----~vG~pla~lL~~-----~gatV~~~~~~t~~l~~---~v~~ADIVvsAtg   80 (140)
T cd05212          20 NKEGVRLD----G---KKVLVVGRSG----IVGAPLQCLLQR-----DGATVYSCDWKTIQLQS---KVHDADVVVVGSP   80 (140)
T ss_pred             HHcCCCCC----C---CEEEEECCCc----hHHHHHHHHHHH-----CCCEEEEeCCCCcCHHH---HHhhCCEEEEecC
Confidence            44677653    2   2588898764    233455566655     46778777755556655   5779999999988


Q ss_pred             hh-hhhhhccCCCcEEEEEe
Q 017449          257 AQ-LTNIFLMDRNSSVMEFF  275 (371)
Q Consensus       257 Ag-LtN~lFm~pgs~viEi~  275 (371)
                      .. +-..=|++||++|+-+-
T Consensus        81 ~~~~i~~~~ikpGa~Vidvg  100 (140)
T cd05212          81 KPEKVPTEWIKPGATVINCS  100 (140)
T ss_pred             CCCccCHHHcCCCCEEEEcC
Confidence            65 34455889999999443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/403 (12%), Positives = 114/403 (28%), Gaps = 104/403 (25%)

Query: 4   LYDC-HQEGEVQYQQFPSKSSQNRLLCIKGRDNHDGSWNYYALAWPKALPYNATLMKGLT 62
           L+     + E   Q+F           ++     +  +    L  P         M    
Sbjct: 67  LFWTLLSKQEEMVQKF-----------VEEVLRINYKF----LMSPIKTEQRQPSMMTRM 111

Query: 63  FVSYNHYSYENIWHGLSAMVPFVAWHQKNNCEL--------PTRWILYHWGELRLGM-GP 113
           ++       + +++       +     +   +L        P + +L        G+ G 
Sbjct: 112 YIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID------GVLGS 161

Query: 114 WLQTLMHATFDGEPVIERFDG----IN------DEDGGDPV---C--FEKAVVMRHNEGG 158
               +         V  + D     +N       E   + +       +     R +   
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 159 MSRERRMEVYDLMR--CKARMYCN--VSLDN-KDDNH-KA--VGMTLLMRTGPRSFTNEP 210
             + R   +   +R   K++ Y N  + L N ++     A  +   +L+ T  +  T+  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-- 279

Query: 211 AIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSS 270
            +          +D   MT+      +   +       D+   P     TN         
Sbjct: 280 FLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTN--------- 326

Query: 271 VMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWRDPNGE----------NCTYSEDDR 320
                P    +L+ + + +   +A+W        W+  N +          N     + R
Sbjct: 327 -----P---RRLSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 321 RC---MSIY-KNGRIGYNETYFSEWARNVLNEVKTM--KLEKS 357
           +    +S++  +  I         W   + ++V  +  KL K 
Sbjct: 373 KMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKY 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00