Citrus Sinensis ID: 017499

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAASAAEE
ccccEEEcccHHHHHHHHccccccEEEEEEccEEEEEccEEEEccccHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHcccEEEccccccEEEEcccccEEEEcccccEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccEEEEcccccccccccEEEEEEcccccccccccEEEEEEEEccccccccccHHHHHHccccccEEEEEEEccccccccccccEEEccccccccccHHHHHHHHHHHHHHccccccccccccccccccc
ccccEEEcccHHHHHHHHHcHHHHccEEEccEEEEEEccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccEHHHHHHHccccHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHHHHHHHHcHcccEEEEcccccHHHHHHHHHHHHHccEEEccccccEEEEcEccEEEEEEEccEEEEEEEEEEcHHHcHHHEEEEEEEEEEEEEEccccccccccccEEEEEcHHHHcccccEEEEEEEHHHcccccccEEEEEEEEcccccHHHHcHHHHcccccccEEEEEEEEEEEEccccccccEEEccccccccEcHHHHHHHHHHHHHHHcccccccccccHHHHHcc
MIPKFIIANGALVRVLIHTDVTKYLYfkavdgsfvynkgkvhkvpatdmealksPLMGIFEKRRARKFFIYVqdydendpkthegmdltRVTTRELIAkyglddntiDFIGHALalhrddrylnepaldTVKRMKLYAESIARfqggspyiyplyglgelPQAFARLSAVYggtymlnkpeckvefdeegkvvgvtsegetakckkvvcdpsylpnkvrkVGRVARAIAImshpipntndshsvqvilpqkqlgrrsdmylfccsyshnvapkgkFIAFVSTeaetdhpqtelkpgidllgpvdeifydiydryepvnepsldncfistsydatthfeSTVTDVLNMYTMITGKVLDLSVDLSAASAAEE
mipkfiiangalVRVLIHTDVTKYLYFKAVDGSFVYNKGKvhkvpatdmealksPLMGIFEKRRARKFFIYvqdydendpkthegmdltrVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVgvtsegetakckkvvcdpsylpnkvrKVGRVARAIAIMShpipntndshsvQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETdhpqtelkpgidllgPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAASAAEE
MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKvldlsvdlsaasaaEE
***KFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN****HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA*******ELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVD*********
MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA*******E**PGIDLLGPVDEIFYDIYDRY*****PSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDL************
MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTE********ELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDL********
MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSV**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAASAAEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
P50398447 Rab GDP dissociation inhi yes no 0.962 0.796 0.567 1e-122
P21856447 Rab GDP dissociation inhi yes no 0.962 0.796 0.567 1e-122
O97555447 Rab GDP dissociation inhi yes no 0.962 0.796 0.564 1e-122
P50396447 Rab GDP dissociation inhi yes no 0.962 0.796 0.564 1e-122
P60028447 Rab GDP dissociation inhi yes no 0.962 0.796 0.567 1e-122
P31150447 Rab GDP dissociation inhi yes no 0.962 0.796 0.567 1e-122
Q7YQM0447 Rab GDP dissociation inhi N/A no 0.962 0.796 0.564 1e-122
Q8HXX7447 Rab GDP dissociation inhi N/A no 0.962 0.796 0.564 1e-121
P50395445 Rab GDP dissociation inhi no no 0.962 0.8 0.547 1e-118
Q5RCE1445 Rab GDP dissociation inhi no no 0.962 0.8 0.547 1e-117
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 Back     alignment and function desciption
 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/358 (56%), Positives = 275/358 (76%), Gaps = 2/358 (0%)

Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           +IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+F
Sbjct: 76  LIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMF 135

Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D
Sbjct: 136 EKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTD 195

Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
            YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 196 DYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 254

Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
              +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct: 255 VDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
           ++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL
Sbjct: 314 ANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELL 373

Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDL 358
            P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G   D 
Sbjct: 374 EPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDF 431
Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Rattus norvegicus (taxid: 10116)
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1 Back     alignment and function description
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1 Back     alignment and function description
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3 Back     alignment and function description
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1 Back     alignment and function description
>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2 Back     alignment and function description
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1 Back     alignment and function description
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2 Back     alignment and function description
>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
255545283444 protein with unknown function [Ricinus c 1.0 0.833 0.943 0.0
224117826444 predicted protein [Populus trichocarpa] 1.0 0.833 0.937 0.0
156972239444 GDP-dissociation inhibitor [Lupinus albu 1.0 0.833 0.940 0.0
225434259444 PREDICTED: rab GDP dissociation inhibito 1.0 0.833 0.932 0.0
2501850444 GDP dissociation inhibitor [Nicotiana ta 1.0 0.833 0.932 0.0
224095286444 predicted protein [Populus trichocarpa] 1.0 0.833 0.935 0.0
82623395444 GDP dissociation inhibitor 1-like [Solan 1.0 0.833 0.927 0.0
3175990444 GDP dissociation inhibitor [Cicer arieti 1.0 0.833 0.921 0.0
224815412444 Rab GDP dissociation inhibitor [Nicotian 1.0 0.833 0.924 0.0
356512590444 PREDICTED: rab GDP dissociation inhibito 1.0 0.833 0.924 0.0
>gi|255545283|ref|XP_002513702.1| protein with unknown function [Ricinus communis] gi|223547153|gb|EEF48649.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/370 (94%), Positives = 364/370 (98%)

Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           MIPKF++ANG LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF
Sbjct: 75  MIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 134

Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT+DFIGHALALHRDD
Sbjct: 135 EKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNTMDFIGHALALHRDD 194

Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
           RYL+EPALDTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP
Sbjct: 195 RYLDEPALDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 254

Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
           ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK RKV RVARAIAIMSHPIPNTND
Sbjct: 255 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKARKVSRVARAIAIMSHPIPNTND 314

Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
           SHS QVILPQKQLGRRSDMYLFCCSYSHNVAPKGK+IAFVS+EAETD+P+ ELKPGIDLL
Sbjct: 315 SHSAQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKYIAFVSSEAETDNPEVELKPGIDLL 374

Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSV 360
           GPVDEIF+++YDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMY+MITGKVLDLSV
Sbjct: 375 GPVDEIFFEVYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYSMITGKVLDLSV 434

Query: 361 DLSAASAAEE 370
           DLSAASAAEE
Sbjct: 435 DLSAASAAEE 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117826|ref|XP_002331641.1| predicted protein [Populus trichocarpa] gi|118484203|gb|ABK93982.1| unknown [Populus trichocarpa] gi|118487234|gb|ABK95445.1| unknown [Populus trichocarpa] gi|222874037|gb|EEF11168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|156972239|gb|ABU98948.1| GDP-dissociation inhibitor [Lupinus albus] Back     alignment and taxonomy information
>gi|225434259|ref|XP_002280606.1| PREDICTED: rab GDP dissociation inhibitor alpha [Vitis vinifera] gi|147840053|emb|CAN70679.1| hypothetical protein VITISV_044153 [Vitis vinifera] gi|296084382|emb|CBI24770.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|2501850|gb|AAB80717.1| GDP dissociation inhibitor [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224095286|ref|XP_002310371.1| predicted protein [Populus trichocarpa] gi|222853274|gb|EEE90821.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|82623395|gb|ABB87112.1| GDP dissociation inhibitor 1-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|3175990|emb|CAA06731.1| GDP dissociation inhibitor [Cicer arietinum] Back     alignment and taxonomy information
>gi|224815412|gb|ACN65853.1| Rab GDP dissociation inhibitor [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|356512590|ref|XP_003525001.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2080527444 GDI2 "RAB GDP dissociation inh 1.0 0.833 0.829 2.8e-169
TAIR|locus:2051839445 GDI1 "guanosine nucleotide dip 1.0 0.831 0.827 8.5e-168
TAIR|locus:2144741445 GDI "RAB GDP-dissociation inhi 0.956 0.795 0.813 6.5e-161
DICTYBASE|DDB_G0268034454 DDB_G0268034 "Rab GDP dissocia 0.951 0.775 0.595 1.2e-113
UNIPROTKB|P21856447 GDI1 "Rab GDP dissociation inh 0.948 0.785 0.572 4.6e-112
UNIPROTKB|F1PWQ0447 GDI1 "Rab GDP dissociation inh 0.948 0.785 0.572 4.6e-112
UNIPROTKB|I3L893447 GDI1 "Uncharacterized protein" 0.948 0.785 0.575 4.6e-112
RGD|2676447 Gdi1 "GDP dissociation inhibit 0.948 0.785 0.572 4.6e-112
UNIPROTKB|O97555447 GDI1 "Rab GDP dissociation inh 0.948 0.785 0.569 5.9e-112
ZFIN|ZDB-GENE-050522-504447 gdi1 "GDP dissociation inhibit 0.948 0.785 0.572 5.9e-112
TAIR|locus:2080527 GDI2 "RAB GDP dissociation inhibitor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 307/370 (82%), Positives = 335/370 (90%)

Query:     1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
             M+PKF++ NG LVR LIHTDVTKYL FKAVDGS+V+ KGKV KVPAT MEALKS LMGIF
Sbjct:    75 MMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPATPMEALKSSLMGIF 134

Query:    61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
             EKRRA KFF +VQ+YDE DPKTH+GMDLTRVTT+ELIAKYGLD NTIDFIGHA+ALH +D
Sbjct:   135 EKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNTIDFIGHAVALHTND 194

Query:   121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
             ++L++PA DTV RMKLYAES+ARFQG SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP
Sbjct:   195 QHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 254

Query:   181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
             ECKVEFDE GKV+GVTSEGETAKCKK+VCDPSYLPNKVRK+GRVARAIAIMSHPIPNTND
Sbjct:   255 ECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRVARAIAIMSHPIPNTND 314

Query:   241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
             SHSVQVI+PQKQL R+SDMY+FCCSYSHNVAPKGKFIAFVST+AETD+PQTELKPG DLL
Sbjct:   315 SHSVQVIIPQKQLARKSDMYVFCCSYSHNVAPKGKFIAFVSTDAETDNPQTELKPGTDLL 374

Query:   301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKXXXXXX 360
             GPVDEIF+D+YDRYEPVNEP LDNCFISTSYDATTHFE+TV DVLNMYT+ITGK      
Sbjct:   375 GPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATTHFETTVADVLNMYTLITGKQLDLSV 434

Query:   361 XXXXXXXXEE 370
                     EE
Sbjct:   435 DLSAASAAEE 444
GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0015031 "protein transport" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0042732 "D-xylose metabolic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
TAIR|locus:2051839 GDI1 "guanosine nucleotide diphosphate dissociation inhibitor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144741 GDI "RAB GDP-dissociation inhibitor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268034 DDB_G0268034 "Rab GDP dissociation inhibitor alpha" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P21856 GDI1 "Rab GDP dissociation inhibitor alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWQ0 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L893 GDI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2676 Gdi1 "GDP dissociation inhibitor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O97555 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-504 gdi1 "GDP dissociation inhibitor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50398GDIA_RATNo assigned EC number0.56700.96210.7964yesno
P50396GDIA_MOUSENo assigned EC number0.56420.96210.7964yesno
P31150GDIA_HUMANNo assigned EC number0.56700.96210.7964yesno
P39958GDI1_YEASTNo assigned EC number0.51110.96480.7915yesno
O97555GDIA_CANFANo assigned EC number0.56420.96210.7964yesno
Q10305GDI1_SCHPONo assigned EC number0.52510.96480.8113yesno
P21856GDIA_BOVINNo assigned EC number0.56700.96210.7964yesno
P60028GDIA_PANTRNo assigned EC number0.56700.96210.7964yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1700012
SubName- Full=Putative uncharacterized protein; (445 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam00996439 pfam00996, GDI, GDP dissociation inhibitor 0.0
PTZ00363443 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor 0.0
COG5044434 COG5044, MRS6, RAB proteins geranylgeranyltransfer 1e-104
>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor Back     alignment and domain information 
 Score =  638 bits (1647), Expect = 0.0
 Identities = 245/359 (68%), Positives = 301/359 (83%), Gaps = 1/359 (0%)

Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           +IPKF++ANG LV++LIHTDVT+YL FKAV+GS+VY  GK+HKVPA +MEAL SPLMGIF
Sbjct: 76  LIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVPANEMEALSSPLMGIF 135

Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKRR RKF  YVQDYDE+DPKTH+G+D  + T  E+  K+GLD+NTIDFIGHALAL+RDD
Sbjct: 136 EKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDD 195

Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
            YLN+PAL TV+R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 196 DYLNQPALPTVERIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 254

Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
             ++ +DE GKVVGV S GE A+ K+V+CDPSY P+KVRKVG+V RAI I+SHPIPNTND
Sbjct: 255 VDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKVRKVGQVIRAICILSHPIPNTND 314

Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
           + SVQ+I+PQ Q+GR+SD+Y+ CCSY+HNV PKGK+IA VST  ET++P++EL PG+DLL
Sbjct: 315 AGSVQIIIPQNQVGRKSDIYISCCSYAHNVCPKGKYIAIVSTTVETENPESELAPGLDLL 374

Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLS 359
           GP+DE F  I D YEP ++ S D  FIS SYDATTHFE+T  DVL+++   TGK LD S
Sbjct: 375 GPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDVLDIFKRYTGKALDFS 433

Length = 439
>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
PF00996438 GDI: GDP dissociation inhibitor; InterPro: IPR0182 100.0
KOG1439440 consensus RAB proteins geranylgeranyltransferase c 100.0
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 100.0
COG5044434 MRS6 RAB proteins geranylgeranyltransferase compon 100.0
KOG4405547 consensus GDP dissociation inhibitor [Signal trans 100.0
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.1
COG1233487 Phytoene dehydrogenase and related proteins [Secon 98.82
TIGR02730493 carot_isom carotene isomerase. Members of this fam 98.77
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 98.67
PRK07233434 hypothetical protein; Provisional 98.41
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 98.36
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 98.18
PLN02612567 phytoene desaturase 98.15
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 98.12
PLN02576496 protoporphyrinogen oxidase 98.1
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 98.06
PLN02487569 zeta-carotene desaturase 98.01
PRK12416463 protoporphyrinogen oxidase; Provisional 97.94
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 97.89
PRK11883451 protoporphyrinogen oxidase; Reviewed 97.69
PRK07208479 hypothetical protein; Provisional 97.57
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 97.55
PRK13977 576 myosin-cross-reactive antigen; Provisional 96.67
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 95.38
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 94.39
TIGR02485432 CobZ_N-term precorrin 3B synthase CobZ. CobZ is es 93.9
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 93.89
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 92.83
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 91.98
COG0579429 Predicted dehydrogenase [General function predicti 91.71
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 91.22
PLN02529 738 lysine-specific histone demethylase 1 89.13
COG1231450 Monoamine oxidase [Amino acid transport and metabo 88.15
PLN02676487 polyamine oxidase 88.13
PRK04176257 ribulose-1,5-biphosphate synthetase; Provisional 87.2
TIGR03377 516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 87.12
PRK08274 466 tricarballylate dehydrogenase; Validated 87.05
COG2509 486 Uncharacterized FAD-dependent dehydrogenases [Gene 87.04
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 86.93
PTZ00383497 malate:quinone oxidoreductase; Provisional 86.63
COG2081408 Predicted flavoproteins [General function predicti 86.24
PRK10157 428 putative oxidoreductase FixC; Provisional 86.22
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 85.84
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 85.78
TIGR03378419 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase 85.43
PRK07121492 hypothetical protein; Validated 85.29
TIGR01813439 flavo_cyto_c flavocytochrome c. This model describ 85.14
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 84.7
PRK10015 429 oxidoreductase; Provisional 84.64
PRK11101 546 glpA sn-glycerol-3-phosphate dehydrogenase subunit 82.68
PLN02568539 polyamine oxidase 82.11
PRK06134 581 putative FAD-binding dehydrogenase; Reviewed 81.98
PF00890417 FAD_binding_2: FAD binding domain of the Pfam fami 81.65
TIGR00292254 thiazole biosynthesis enzyme. This enzyme is invol 81.34
TIGR00275400 flavoprotein, HI0933 family. The model when search 81.1
PRK12835 584 3-ketosteroid-delta-1-dehydrogenase; Reviewed 81.08
COG2907447 Predicted NAD/FAD-binding protein [General functio 80.23
PRK11728393 hydroxyglutarate oxidase; Provisional 80.12
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function Back     alignment and domain information 
Probab=100.00  E-value=4.3e-107  Score=816.09  Aligned_cols=361  Identities=58%  Similarity=0.999  Sum_probs=317.3

Q ss_pred             CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499            1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP   80 (370)
Q Consensus         1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~   80 (370)
                      |+||||||+|+||++|++|+++|||||++|+++|+|++|++++||+||+|+|++++||++|||+|||||+++.+|+++++
T Consensus        76 L~PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~  155 (438)
T PF00996_consen   76 LIPKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDP  155 (438)
T ss_dssp             SS--BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBG
T ss_pred             cchHhhhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999998878


Q ss_pred             CcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCcH
Q 017499           81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  160 (370)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~geI  160 (370)
                      ++|++.+...+||.+++++|+|+++++++++|+|||+.++++.++|+.++++||++|++|+||| |+||||||+||+|||
T Consensus       156 ~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GEL  234 (438)
T PF00996_consen  156 STHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGEL  234 (438)
T ss_dssp             GGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHH
T ss_pred             chhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccH
Confidence            8888888788999999999999999999999999999998898889999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccCeEEEEEEeecCCCCCCCC
Q 017499          161 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND  240 (370)
Q Consensus       161 ~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I~~~pi~~~~~  240 (370)
                      ||||||+|||+||+||||++|++|.++++|++.||.++||+++|++||++|+|+|+++++.++|+|+|||++|||+++++
T Consensus       235 pQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~  314 (438)
T PF00996_consen  235 PQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTED  314 (438)
T ss_dssp             HHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT
T ss_pred             HHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCC
Confidence            99999999999999999999999999888999999999999999999999999999888889999999999999999998


Q ss_pred             CCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCccceeeeeeeccccCCCC
Q 017499          241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP  320 (370)
Q Consensus       241 ~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~  320 (370)
                      ..+++||||+++.+|++||||+++|++|++||+|+||+|+||+++|++|++||+|++++|++++++|+.+++.|+|.++|
T Consensus       315 ~~s~~IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~  394 (438)
T PF00996_consen  315 ASSVQIIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDG  394 (438)
T ss_dssp             -SSEEEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSS
T ss_pred             CceEEEecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccCh
Q 017499          321 SLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDL  362 (370)
Q Consensus       321 ~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~  362 (370)
                      ..|||||++|||+|+|||++++||++||+||+|+++||++.+
T Consensus       395 ~~~~i~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~  436 (438)
T PF00996_consen  395 TDDNIFISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRK  436 (438)
T ss_dssp             TTTSEEE-----S-SBSHHHHHHHHHHHHHHHSS--------
T ss_pred             ccCceEEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCC
Confidence            999999999999999999999999999999999999999754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PRK13977 myosin-cross-reactive antigen; Provisional Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>PRK08274 tricarballylate dehydrogenase; Validated Back     alignment and domain information
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Back     alignment and domain information
>PRK07121 hypothetical protein; Validated Back     alignment and domain information
>TIGR01813 flavo_cyto_c flavocytochrome c Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PRK06134 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family Back     alignment and domain information
>TIGR00292 thiazole biosynthesis enzyme Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1gnd_A447 Guanine Nucleotide Dissociation Inhibitor, Alpha-Is 1e-122
1lv0_A449 Crystal Structure Of The Rab Effector Guanine Nucle 1e-122
1d5t_A433 Guanine Nucleotide Dissociation Inhibitor, Alpha-Is 1e-122
3cph_G451 Crystal Structure Of Sec4 In Complex With Rab-Gdi L 1e-107
1ukv_G453 Structure Of Rabgdp-Dissociation Inhibitor In Compl 1e-107
3p1w_A475 Crystal Structure Of Rab Gdi From Plasmodium Falcip 2e-96
1vg0_A650 The Crystal Structures Of The Rep-1 Protein In Comp 2e-24
1ltx_R650 Structure Of Rab Escort Protein-1 In Complex With R 2e-24
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447 Back     alignment and structure 
Iteration: 1

 Score =  435 bits (1119), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/353 (57%), Positives = 274/353 (77%), Gaps = 2/353 (0%)
Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           +IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+F
Sbjct: 76  LIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMF 135
Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D
Sbjct: 136 EKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTD 195
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
            YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 196 DYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 254
Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
              +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct: 255 VDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTND 313
Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
           ++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL
Sbjct: 314 ANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELL 373
Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
            P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct: 374 EPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449 Back     alignment and structure
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433 Back     alignment and structure
>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451 Back     alignment and structure
>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453 Back     alignment and structure
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475 Back     alignment and structure
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650 Back     alignment and structure
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 1e-145
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 1e-139
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 1e-131
1vg0_A650 RAB proteins geranylgeranyltransferase component A 1e-121
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 4e-07
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 6e-06
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 7e-06
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 3e-04
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 3e-04
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 9e-04
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453 Back     alignment and structure
 Score =  419 bits (1077), Expect = e-145
 Identities = 184/361 (50%), Positives = 261/361 (72%), Gaps = 3/361 (0%)

Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           +IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIF
Sbjct: 86  LIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIF 145

Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+AL  +D
Sbjct: 146 EKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND 205

Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
            YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P
Sbjct: 206 DYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTP 264

Query: 181 ECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNT 238
             +V + ++ GK  GV ++  T K   V+ DP+Y P K +  G RV RAI I++HP+PNT
Sbjct: 265 IDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNT 324

Query: 239 NDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID 298
           +++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   
Sbjct: 325 SNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFK 384

Query: 299 LLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDL 358
           LLGP++E F  I + +EP  + S DN ++S SYDA++HFES   DV ++Y  +TG  L L
Sbjct: 385 LLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTGHPLVL 444

Query: 359 S 359
            
Sbjct: 445 K 445
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433 Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475 Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650 Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 100.0
1vg0_A650 RAB proteins geranylgeranyltransferase component A 100.0
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 100.0
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 100.0
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 99.48
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.07
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 98.85
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 98.09
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 97.94
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 97.89
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 97.75
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 97.55
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 97.44
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 97.35
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 97.31
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 97.23
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 94.84
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 94.68
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 94.63
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 94.43
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 93.27
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 92.97
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 92.82
3fg2_P404 Putative rubredoxin reductase; ferredoxin reductas 92.65
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 92.24
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 91.83
2i0z_A 447 NAD(FAD)-utilizing dehydrogenases; structural geno 91.64
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 90.44
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 90.39
4at0_A510 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore 90.16
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 89.63
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 89.55
3dme_A369 Conserved exported protein; structural genomics, P 89.34
3nlc_A 549 Uncharacterized protein VP0956; FAD-binding protei 89.26
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 88.57
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 88.53
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 88.19
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 88.11
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 88.06
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 87.98
2weu_A 511 Tryptophan 5-halogenase; regioselectivity, antifun 87.94
2cdu_A452 NADPH oxidase; flavoenzyme, oxidoreductase; HET: F 87.49
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 87.42
2e4g_A 550 Tryptophan halogenase; flavin-binding, rebeccamyci 87.25
1q1r_A431 Putidaredoxin reductase; glutathione reductase fol 86.98
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 86.92
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 86.03
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 85.72
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 85.59
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 85.48
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 85.43
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 85.33
1rsg_A 516 FMS1 protein; FAD binding motif, oxidoreductase; H 84.89
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 84.76
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 84.37
3atr_A 453 Conserved archaeal protein; saturating double bond 83.94
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 83.92
2aqj_A 538 Tryptophan halogenase, pRNA; flavin-dependent halo 83.5
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 83.41
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 83.14
3oc4_A452 Oxidoreductase, pyridine nucleotide-disulfide FAM; 82.75
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 82.22
2wdq_A 588 Succinate dehydrogenase flavoprotein subunit; succ 81.66
2pyx_A 526 Tryptophan halogenase; structural genomics, JOI fo 80.51
1mo9_A523 ORF3; nucleotide binding motifs, nucleotide bindin 80.43
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
Probab=100.00  E-value=1.2e-81  Score=641.61  Aligned_cols=365  Identities=47%  Similarity=0.845  Sum_probs=338.1

Q ss_pred             CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEe---------CCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHH
Q 017499            1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYN---------KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY   71 (370)
Q Consensus         1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~---------~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~   71 (370)
                      |.||+++++|+|+++|+++++++||+|++++++|++.         +|++++||++++++|+++.+++.|||++||||.+
T Consensus        91 L~P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~  170 (475)
T 3p1w_A           91 LIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQY  170 (475)
T ss_dssp             SSCCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred             ecCeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999886         6789999999999999999999999999999999


Q ss_pred             HhhcccCCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCcee
Q 017499           72 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI  151 (370)
Q Consensus        72 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPfl  151 (370)
                      +.++.+.++++|++++....|+.+++++|++++.+++++.|+++|+..+++.+.|+.+++.|+++|+.|+++| |++||+
T Consensus       171 l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y-g~s~~~  249 (475)
T 3p1w_A          171 VSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFI  249 (475)
T ss_dssp             HHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEE
T ss_pred             HHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc-CCCceE
Confidence            9998766666676666667899999999999999999999999999877787789999999999999999999 999999


Q ss_pred             ecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC---CccccccCeEEEE
Q 017499          152 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---PNKVRKVGRVARA  227 (370)
Q Consensus       152 yp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y~---p~~~~~~~~v~R~  227 (370)
                      ||+||+++|+|+|+|.++++||+|++|++|++|.++++|+++||++ +|++++||.||++++|+   |++++..++++|+
T Consensus       250 yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~~~p~~~~~~~~v~R~  329 (475)
T 3p1w_A          250 YPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKKIGQVIRC  329 (475)
T ss_dssp             EETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCTTSTTSEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccccCcccccccceEEEE
Confidence            9999999999999999999999999999999999866789999997 68999999999999999   9888777899999


Q ss_pred             EEeecCCCCCCCCCCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCcccee
Q 017499          228 IAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIF  307 (370)
Q Consensus       228 i~I~~~pi~~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~  307 (370)
                      |||+++||++++++.++||+||+++++++++|||+++|++|++||+|+||+|+||++||++|++||+|++++|+|++++|
T Consensus       330 i~I~~~pi~~~~~~~~~~i~~P~~~~~~~~~iy~~~~s~~~~~cp~G~~i~~~st~~e~~~~~~~l~~~l~~l~~~~~~~  409 (475)
T 3p1w_A          330 ICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGKYIAIVSATVETNNPIKEIEKPLELLGTIEEKF  409 (475)
T ss_dssp             EEEESSCCTTSTTCSSEEEEECGGGGTSSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHHTTCSEEEEE
T ss_pred             EEEEeccCcccCCCceEEEEeCCcccCCCCCEEEEEECCCcCcCCCCcEEEEEEeecCCCCHHHHHHHHHHHhcchhhee
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeccccCCCCCCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccChhhhh
Q 017499          308 YDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAAS  366 (370)
Q Consensus       308 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~~~~~  366 (370)
                      +.++++|+|.++|.++|||||+|||+++|||++++||++||+||||+++||++.++.++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~  468 (475)
T 3p1w_A          410 VKISDLYVSTSKKPADNIFVTSSYDATSHFETATNDLLQIWENLWGQKLNFDDLNTNAD  468 (475)
T ss_dssp             EEEEEEEEESCSSCTTCEEECCCCCSCSBSHHHHHHHHHHHHHHHSSCCCC--------
T ss_pred             ccchheeeecccCCCCCEEEeCCCCCccchHHHHHHHHHHHHHHhCCcceecCCCcccc
Confidence            99999999999999999999999999999999999999999999999999996554443
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1vg0a1491 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 { 1e-101
d1d5ta297 d.16.1.6 (A:292-388) Guanine nucleotide dissociati 1e-57
d2bcgg398 d.16.1.6 (G:302-399) Guanine nucleotide dissociati 2e-55
d2bcgg1297 c.3.1.3 (G:5-301) Guanine nucleotide dissociation 2e-33
d1vg0a2113 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra 1e-29
d1d5ta1336 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di 7e-26
d1d5ta1336 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di 2e-07
d2bcgg247 c.3.1.3 (G:400-446) Guanine nucleotide dissociatio 2e-17
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  306 bits (784), Expect = e-101
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 21/279 (7%)

Query: 1   MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
           ++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + 
Sbjct: 226 LVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMV 285

Query: 61  EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
           EKR   KF  +  +Y+E  P  +   + T  T  E +    L  N   F+ H++A+  + 
Sbjct: 286 EKRMLMKFLTFCVEYEE-HPDEYRAYEGT--TFSEYLKTQKLTPNLQYFVLHSIAMTSET 342

Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
                  +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L   
Sbjct: 343 TS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 181 ECKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNT 238
              +  D+E +     +   G+    K  + + SYL        RV+R       P    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSRDC-YNDLP---- 451

Query: 239 NDSHSVQVILPQKQLGRRSDMYLFCC-SYSHNVAPKGKF 276
               S   +      G  +D  +    +    + P   F
Sbjct: 452 ----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDF 486
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 97 Back     information, alignment and structure
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98 Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 Back     information, alignment and structure
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113 Back     information, alignment and structure
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1vg0a1491 Rab escort protein 1 {Rat (Rattus norvegicus) [Tax 100.0
d1d5ta297 Guanine nucleotide dissociation inhibitor, GDI {Co 100.0
d2bcgg398 Guanine nucleotide dissociation inhibitor, GDI {Ba 100.0
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 99.96
d1vg0a2113 Rab escort protein 1 {Rat (Rattus norvegicus) [Tax 99.89
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 99.87
d2bcgg247 Guanine nucleotide dissociation inhibitor, GDI {Ba 99.68
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 96.45
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 96.17
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 95.61
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 94.91
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 94.89
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 94.66
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 94.23
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 94.03
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 93.96
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 93.48
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 92.91
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 92.78
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 92.26
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 92.23
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 92.06
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 91.39
d1y0pa2308 Flavocytochrome c3 (respiratory fumarate reductase 91.38
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 91.23
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 90.9
d1d4ca2322 Flavocytochrome c3 (respiratory fumarate reductase 90.72
d1qo8a2317 Flavocytochrome c3 (respiratory fumarate reductase 90.54
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 88.66
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 87.39
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 83.85
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 80.73
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-64  Score=510.51  Aligned_cols=255  Identities=27%  Similarity=0.499  Sum_probs=230.4

Q ss_pred             CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499            1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP   80 (370)
Q Consensus         1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~   80 (370)
                      |+||||||+|.||++|++|+++|||||++|+++|+|.+|++++||+||+|+|+++.|+++|||+|||||+++.+|++ ++
T Consensus       226 L~Pk~l~a~g~lv~~Li~S~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~-~~  304 (491)
T d1vg0a1         226 LVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP  304 (491)
T ss_dssp             SSCCCEESSSHHHHHHHHHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH
T ss_pred             ccchheecccHHHHHHHHcChhhheeEEEeceEEEecCCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccC-Cc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999985 46


Q ss_pred             CcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCcH
Q 017499           81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  160 (370)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~geI  160 (370)
                      ++++  +..+.||.+|+++|+|+++++++++|+|||+.++++   ++.++|+||++|++|+||| |+||||||+||+|||
T Consensus       305 ~~~~--~~~~~~~~e~l~~~~l~~~~~~~i~~aial~~~~~~---~~~~~l~ri~~yl~Slg~y-G~spflyp~YG~gEi  378 (491)
T d1vg0a1         305 DEYR--AYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGEL  378 (491)
T ss_dssp             HHHH--TTTTSBHHHHHTTSSSCHHHHHHHHHHTTC--CCSC---BHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHH
T ss_pred             cccc--cccCCcHHHHHHHcCCChHHHHHHHhheeccCCCCc---cHHHHHHHHHHHHHHHHhh-CCCCeEeecCCcchH
Confidence            6666  345789999999999999999999999999987654   6889999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHhCcEEEcCCccceEEEc-CCCcEEEEEe-CCeEEEcCEEEECCCCCCccccccCeEEEEEEeecCCCCCC
Q 017499          161 PQAFARLSAVYGGTYMLNKPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNT  238 (370)
Q Consensus       161 ~Qaf~RlaAv~Gg~y~L~~~V~~I~~~-~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I~~~pi~~~  238 (370)
                      ||||||+|||+||+||||++|++|.++ +++++.+|.. +|++++|++||++|+|+|+++  .++|.| +||+++|    
T Consensus       379 pQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--~~~v~r-~c~~~~~----  451 (491)
T d1vg0a1         379 PQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSR-DCYNDLP----  451 (491)
T ss_dssp             HHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--TTTCCG-GGSSSCC----
T ss_pred             HHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--cceeee-hhhcCCC----
Confidence            999999999999999999999999997 5688999985 799999999999999999764  456777 4777665    


Q ss_pred             CCCCeEEEEeCCCccCCCCCEEEE-------EecCCccccCC
Q 017499          239 NDSHSVQVILPQKQLGRRSDMYLF-------CCSYSHNVAPK  273 (370)
Q Consensus       239 ~~~~s~~ii~P~~~~~~~~~v~v~-------~~~~~~~~cP~  273 (370)
                          ++++|+|+.+.++.+++||.       +++++.++||+
T Consensus       452 ----s~~~i~~~p~~~~~~d~~v~~a~~~~~~~~p~~~~cP~  489 (491)
T d1vg0a1         452 ----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCPA  489 (491)
T ss_dssp             ----TTEEEECCCCSSSSSHHHHHHHHHHHHHHSTTCCSSCC
T ss_pred             ----ceEEEECCCCcCCccchhhhhHhhhhhhcCCCCCcCCC
Confidence                56888888888888887764       45999999996
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure