Citrus Sinensis ID: 017516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
ccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcc
MTLNNISAKVEARherkhipsassALVIGSVLGLIQAFFVIAYAKpilnymgvnsdspmikpaQQYLTLRSLGAPAVLLSLALQGIFrgfkdtktpfyATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIeevdllppsskdlkfgqfLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLvglpfssrlftkDLKVLQLIGvgipfiavtqpinalafvfdginfgasdfaysAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLrigsgsgpwsflka
MTLNNISAKVEarherkhipsasSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRigsgsgpwsflka
MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHvlqlsvvlglvltvnllvglPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFaysaysmvsvavvsILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
************************ALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPW*****
MTLNNISAKVE******HIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
*TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9SYD6515 MATE efflux family protei yes no 0.962 0.691 0.693 1e-144
Q9SFB0526 MATE efflux family protei no no 0.983 0.692 0.579 1e-125
Q9SVE7560 MATE efflux family protei no no 0.951 0.628 0.466 5e-85
Q84K71521 MATE efflux family protei no no 0.951 0.675 0.463 8e-83
Q58119450 Uncharacterized transport yes no 0.816 0.671 0.243 2e-12
Q8W4G3559 MATE efflux family protei no no 0.948 0.627 0.245 2e-12
P28303459 DNA-damage-inducible prot N/A no 0.840 0.677 0.242 4e-11
P76352495 Uncharacterized transport N/A no 0.956 0.715 0.234 1e-10
Q945F0543 Enhanced disease suscepti no no 0.891 0.607 0.227 1e-07
Q4L8N9452 Multidrug export protein yes no 0.824 0.674 0.235 2e-06
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function desciption
 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/356 (69%), Positives = 304/356 (85%)

Query: 15  ERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGA 74
           ++++IPSASSAL+IG VLGL QA F+I+ AKP+L++MGV  DSPM++P+Q+YL+LRSLGA
Sbjct: 160 KKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGA 219

Query: 75  PAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQY 134
           PAVLLSLA QG+FRGFKDT TP +AT++GD+ N+ILDPIFIF+F  GV+GAA AHVISQY
Sbjct: 220 PAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQY 279

Query: 135 LISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGST 194
           L+  ILLWKL+ +VD+   S+K L+F +F+KNGFLL++RVIAVTFCVTL+ASLAAR+GST
Sbjct: 280 LMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGST 339

Query: 195 SMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVL 254
           SMAAFQVCLQ+WLATSLLADG AVA Q ILASAF KKDY +A   AS VLQL +VLG VL
Sbjct: 340 SMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVL 399

Query: 255 TVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAY 314
            V L  GL F +R+FTKD KVL LI +G+PF+A TQPINALAFVFDG+NFGASDF Y+A 
Sbjct: 400 AVILGAGLHFGARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAA 459

Query: 315 SMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA 370
           S+V VA+VSILCL  LSS+HG++G+W  L++YMSLRA  GF RIG+G+GPWSFL++
Sbjct: 460 SLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRIGTGTGPWSFLRS 515
Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function description
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|P28303|DINF_ECOLI DNA-damage-inducible protein F OS=Escherichia coli (strain K12) GN=dinF PE=2 SV=1 Back     alignment and function description
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q4L8N9|MEPA_STAHJ Multidrug export protein MepA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mepA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
224137998 486 predicted protein [Populus trichocarpa] 0.972 0.740 0.755 1e-155
425875109 502 multi drugs and toxic compounds exclusio 0.962 0.709 0.761 1e-155
449448721 521 PREDICTED: MATE efflux family protein 1- 0.975 0.692 0.743 1e-153
297739688 507 unnamed protein product [Vitis vinifera] 0.994 0.725 0.783 1e-153
359481819 977 PREDICTED: MATE efflux family protein 1 0.994 0.376 0.783 1e-152
225435446 513 PREDICTED: MATE efflux family protein 1 0.964 0.695 0.756 1e-150
224104145 493 predicted protein [Populus trichocarpa] 0.970 0.728 0.734 1e-147
356557725 552 PREDICTED: MATE efflux family protein 1- 0.972 0.652 0.711 1e-144
356557727 545 PREDICTED: MATE efflux family protein 1- 0.972 0.660 0.711 1e-144
343761168 553 multidrug resistance pump [Glycine max] 0.972 0.650 0.705 1e-144
>gi|224137998|ref|XP_002322704.1| predicted protein [Populus trichocarpa] gi|222867334|gb|EEF04465.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/360 (75%), Positives = 312/360 (86%)

Query: 11  EARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLR 70
           +  +ER+HIPSASSAL++G VLG+IQ  F+   AKPIL+YMGVNSDSPM+ PA++YL LR
Sbjct: 127 KREYERRHIPSASSALLVGCVLGIIQTLFLTFSAKPILSYMGVNSDSPMLIPAERYLILR 186

Query: 71  SLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHV 130
           SLGAPAVLLSLA+QG+FRG KDTKTP YAT++GD AN++LDPIFIF+F   VSGAAIAHV
Sbjct: 187 SLGAPAVLLSLAMQGVFRGIKDTKTPLYATVIGDAANIVLDPIFIFVFRMDVSGAAIAHV 246

Query: 131 ISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAAR 190
           ISQYLIS+ILLWKLI+ VDLL PS +DL+ G+FLKNG LL+VRVIA T CVTLAASLA R
Sbjct: 247 ISQYLISIILLWKLIKHVDLLSPSMEDLQIGRFLKNGCLLLVRVIAATACVTLAASLATR 306

Query: 191 QGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVL 250
            GSTSMAAFQV LQIWLATSLLADGLAVA Q ILASAF KKDYDKAT  AS VLQ ++VL
Sbjct: 307 HGSTSMAAFQVSLQIWLATSLLADGLAVAGQAILASAFAKKDYDKATATASRVLQYALVL 366

Query: 251 GLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFA 310
           G+VL++ L VGL F+SRLFTKD  VL LI VGIPF+A TQPIN LAFVFDG+N+G SDFA
Sbjct: 367 GVVLSIILSVGLQFASRLFTKDASVLHLISVGIPFVAATQPINVLAFVFDGVNYGVSDFA 426

Query: 311 YSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA 370
           YSAYSMV VA++SILCLF LSSSHGYVGIWVAL+ +MSLRA+AGFLRIG+G GPW FLK+
Sbjct: 427 YSAYSMVLVAIISILCLFTLSSSHGYVGIWVALATFMSLRALAGFLRIGTGMGPWRFLKS 486

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|425875109|dbj|BAM68467.1| multi drugs and toxic compounds exclusion protein [Eucalyptus camaldulensis] Back     alignment and taxonomy information
>gi|449448721|ref|XP_004142114.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] gi|449502611|ref|XP_004161692.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739688|emb|CBI29870.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435446|ref|XP_002285445.1| PREDICTED: MATE efflux family protein 1 [Vitis vinifera] gi|297746319|emb|CBI16375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104145|ref|XP_002313336.1| predicted protein [Populus trichocarpa] gi|222849744|gb|EEE87291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557725|ref|XP_003547162.1| PREDICTED: MATE efflux family protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356557727|ref|XP_003547163.1| PREDICTED: MATE efflux family protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|343761168|gb|AEM55566.1| multidrug resistance pump [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.962 0.691 0.634 6e-119
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.991 0.697 0.521 1.4e-101
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.956 0.632 0.423 2e-72
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.951 0.675 0.426 1.8e-71
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.932 0.751 0.224 1.1e-14
UNIPROTKB|Q8E8P4455 dinF "DNA damage-inducible mul 0.556 0.452 0.263 2.3e-13
TIGR_CMR|SO_4617455 SO_4617 "DNA-damage-inducible 0.556 0.452 0.263 2.3e-13
UNIPROTKB|Q9KVQ1454 VC_0090 "DNA-damage-inducible 0.9 0.733 0.226 8.5e-13
TIGR_CMR|VC_0090454 VC_0090 "DNA-damage-inducible 0.9 0.733 0.226 8.5e-13
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.951 0.629 0.232 6.5e-12
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
 Identities = 226/356 (63%), Positives = 279/356 (78%)

Query:    15 ERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGA 74
             ++++IPSASSAL+IG VLGL QA F+I+ AKP+L++MGV  DSPM++P+Q+YL+LRSLGA
Sbjct:   160 KKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGA 219

Query:    75 PAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQY 134
             PAVLLSLA QG+FRGFKDT TP +AT++GD+ N+ILDPIFIF+F  GV+GAA AHVISQY
Sbjct:   220 PAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQY 279

Query:   135 LISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGST 194
             L+  ILLWKL+ +VD+   S+K L+F +F+KNGFLL++RVIAVTFCVTL+ASLAAR+GST
Sbjct:   280 LMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGST 339

Query:   195 SMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHXXXXXXXXXXXX 254
             SMAAFQVCLQ+WLATSLLADG AVA Q ILASAF KKDY +A   AS             
Sbjct:   340 SMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVL 399

Query:   255 XXXXXXXXPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFXXXXX 314
                      F +R+FTKD KVL LI +G+PF+A TQPINALAFVFDG+NFGASDF     
Sbjct:   400 AVILGAGLHFGARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAA 459

Query:   315 XXXXXXXXXILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA 370
                      ILCL  LSS+HG++G+W  L++YMSLRA  GF RIG+G+GPWSFL++
Sbjct:   460 SLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRIGTGTGPWSFLRS 515
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVQ1 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0090 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SYD6MATE1_ARATHNo assigned EC number0.69380.96210.6912yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.1707.1
hypothetical protein (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-94
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-53
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-43
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-38
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-33
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-28
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 7e-27
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 6e-26
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-25
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 2e-24
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-21
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-19
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-18
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-17
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-16
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 4e-16
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-16
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 9e-14
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 1e-13
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 9e-13
pfam01554161 pfam01554, MatE, MatE 2e-09
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 2e-08
pfam01554161 pfam01554, MatE, MatE 1e-07
PRK09575453 PRK09575, vmrA, multidrug efflux pump VmrA; Review 1e-07
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 2e-06
pfam03023452 pfam03023, MVIN, MviN-like protein 1e-05
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-05
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 4e-05
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 9e-05
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 2e-04
TIGR01695502 TIGR01695, mviN, integral membrane protein MviN 3e-04
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-04
TIGR02900 488 TIGR02900, spore_V_B, stage V sporulation protein 0.001
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.002
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.004
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  287 bits (738), Expect = 2e-94
 Identities = 127/347 (36%), Positives = 185/347 (53%), Gaps = 7/347 (2%)

Query: 19  IPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVL 78
           I     AL++   +GL+            L  +G  + + +   A+QYL +R LGAPAVL
Sbjct: 80  IALLVRALLLALAIGLLLILLQSPLLALALLLLG--ASAAVAALARQYLRIRILGAPAVL 137

Query: 79  LSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISL 138
           L+    G FRG +DT+TP    I+G++ N++LDP+F+F   WGV+GAA+A VI+QYL +L
Sbjct: 138 LNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGAL 197

Query: 139 ILLWKLIEEVDLLPPSS-----KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGS 193
           + LW L   V LL  S            +  K    + +R +A+        +LAAR G 
Sbjct: 198 LGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGD 257

Query: 194 TSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLV 253
             +AA Q+ LQ WL +S   DG A AA+ ++  A    D   A  +A  +LQ  + LG++
Sbjct: 258 VILAANQILLQFWLLSSYFLDGFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVL 317

Query: 254 LTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSA 313
           L +   +G     RLFT D  VL L    +P++A+  PI ALAFV DGI  GA+D  Y  
Sbjct: 318 LALLFFLGGEPIIRLFTDDPAVLALAATYLPWLALLPPIGALAFVLDGIFIGATDTRYLR 377

Query: 314 YSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGS 360
            SM+    V +  LF+L    G  G+W+AL ++M LR +   LR+  
Sbjct: 378 NSMLVSLAVFLPLLFLLVPLWGNHGLWLALILFMLLRGLTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 99.96
PRK10459492 colanic acid exporter; Provisional 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.94
PRK00187 464 multidrug efflux protein NorA; Provisional 99.93
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.93
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.92
PRK01766 456 multidrug efflux protein; Reviewed 99.92
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.85
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.82
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.59
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.57
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.55
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.47
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.43
PRK15099 416 O-antigen translocase; Provisional 99.43
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.27
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.26
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.2
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.06
PRK10459492 colanic acid exporter; Provisional 99.02
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.96
COG2244480 RfbX Membrane protein involved in the export of O- 98.75
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.67
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.55
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.51
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.4
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.96
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.69
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.51
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.38
COG4267467 Predicted membrane protein [Function unknown] 94.47
COG4267 467 Predicted membrane protein [Function unknown] 82.37
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-50  Score=373.01  Aligned_cols=362  Identities=29%  Similarity=0.480  Sum_probs=340.8

Q ss_pred             chhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHH
Q 017516            2 TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSL   81 (370)
Q Consensus         2 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~   81 (370)
                      +.+.+||++|+||+++.++..++++.+.++++++.+++.+.+.++++++++.++|  +.+.+.+|+++..++.|+..++.
T Consensus        76 ~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~  153 (455)
T COG0534          76 TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFALLSF  153 (455)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999998776  89999999999999999999999


Q ss_pred             HHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh-hc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhc---CC---CC
Q 017516           82 ALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-FN-WGVSGAAIAHVISQYLISLILLWKLIEEVD---LL---PP  153 (370)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~-~~-~g~~g~alat~i~~~~~~~~~~~~~~~~~~---~~---~~  153 (370)
                      .+++.+|++||+|.+++.+++++++|+++|++|+++ .+ +|+.|+++||++++++..+....++.++++   ..   ..
T Consensus       154 ~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
T COG0534         154 VLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLL  233 (455)
T ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence            999999999999999999999999999999999998 57 999999999999999999999999887653   11   22


Q ss_pred             CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCH
Q 017516          154 SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDY  233 (370)
Q Consensus       154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~  233 (370)
                      ++++..+|++++.|+|..+++..........+.+++++|++++|+|+++.++.++..+++.|++++.++++++++|+||+
T Consensus       234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~  313 (455)
T COG0534         234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY  313 (455)
T ss_pred             CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            55666789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhH
Q 017516          234 DKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSA  313 (370)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  313 (370)
                      |++++..+.+..++..++...+.+++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.+||.||+|.++
T Consensus       314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~  393 (455)
T COG0534         314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF  393 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017516          314 YSM-VSVAVVSILCLFILSSS-HGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSF  367 (370)
Q Consensus       314 ~~~-~~~~~~~i~~~~~l~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~~  367 (370)
                      ..+ +..+.+.+|+.+++.+. +|..|+|+++..++.+..+...++++  +.+|+.
T Consensus       394 ~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~--~~~~~~  447 (455)
T COG0534         394 IISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLR--RGRWRR  447 (455)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH--Hhhhhh
Confidence            965 45788899999999988 99999999999999999999999887  445544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-25
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  104 bits (262), Expect = 5e-25
 Identities = 70/354 (19%), Positives = 133/354 (37%), Gaps = 24/354 (6%)

Query: 25  ALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQ 84
            L++  ++ +     V+   + I+ +M V  +  M      Y+       PA LL  AL+
Sbjct: 94  GLILALLVSVP-IIAVLFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALR 150

Query: 85  GIFRGFKDTKTPFYATILGDLANVILDPIFIF----LFNWGVSGAAIAHVISQYLISLIL 140
               G   TK       +G L N+ L+ IF++        G  G  +A  I  +++ L+L
Sbjct: 151 SFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL 210

Query: 141 LWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRV---IAVTFCV-----TLAASLAARQG 192
           L+  I     L        F +      + + R+   +A           + A L A  G
Sbjct: 211 LF-YIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG 269

Query: 193 STSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGL 252
           ST +AA QV L       +    +  A    +     ++D   A   A+  L   +    
Sbjct: 270 STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATAC 329

Query: 253 VLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASD---- 308
           +  +  ++     + L+T++  V+ L    + F A+ Q ++A+  V  G   G  D    
Sbjct: 330 ITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389

Query: 309 --FAYSAYSMVSVAVVSILCLFILSSSHGY--VGIWVALSMYMSLRAIAGFLRI 358
               + +Y ++ +    IL +    +       G W+   + +S  A+    R+
Sbjct: 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRL 443

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=4.9e-43  Score=327.75  Aligned_cols=356  Identities=20%  Similarity=0.212  Sum_probs=325.9

Q ss_pred             hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516            3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA   82 (370)
Q Consensus         3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~   82 (370)
                      .+.++|+.|++|+++.++.+++++.+..+.+++..++ ..+.+++...++.+++  ..+.+..|++++.++.++..+...
T Consensus        72 ~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~  148 (460)
T 3mkt_A           72 VPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQA  148 (460)
T ss_dssp             GGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999887764 7788999998876655  788899999999999999999999


Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC------
Q 017516           83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLP------  152 (370)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~------  152 (370)
                      .++++|++||++.++..++++.++|+++++++++.    |++|+.|+++++.+++.+..++...+.+++++..+      
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (460)
T 3mkt_A          149 LRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFET  228 (460)
T ss_dssp             HTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCC
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhc
Confidence            99999999999999999999999999999999975    48999999999999999999988888776543221      


Q ss_pred             -CCcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 017516          153 -PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKK  231 (370)
Q Consensus       153 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~  231 (370)
                       .+.++..+|++++.+.|.+++++...+...+++.+++++|++++++|+++.++.++...+..+++++..|.+++++|+|
T Consensus       229 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~  308 (460)
T 3mkt_A          229 FHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQ  308 (460)
T ss_dssp             CCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             1344556799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhh
Q 017516          232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAY  311 (370)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  311 (370)
                      |++++++..+++.+....++++.++++.++++++..+|++|+++.+.+..++++++++.++++++....+++++.||+|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  388 (460)
T 3mkt_A          309 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTA  388 (460)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            99999999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             hHHHHHHHH-HHHHHHHHHhhhc-------cCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516          312 SAYSMVSVA-VVSILCLFILSSS-------HGYVGIWVALSMYMSLRAIAGFLRIGSG  361 (370)
Q Consensus       312 ~~~~~~~~~-~~~i~~~~~l~~~-------~g~~G~~~a~~~~~~~~~~~~~~~~~~~  361 (370)
                      +++..+... ++++|+++++.+.       +|..|+|+++.+++.+..+...++++++
T Consensus       389 ~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          389 IFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999776654 9999999999887       9999999999999999988877766543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00