Citrus Sinensis ID: 017540

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
ccccccccccccccccccccccccEEEccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEEcEEEEcccccccccccccEEEEEEccccccHHHHHHHcccccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccccccccccccEEEcccccccccccccccccEEEEEEEEEEccccccccEEEEEEEcccEEEEEcccEEEccHHHHHHHHccccccccccccEEEEEEEEEccccccc
ccccHHHHHHHHccccccccccccEcccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcHHHHHHcccccccHHHHHHcEEEEEEEEEEEcccccccccccccEEccccccccHHHHHHHHcccccccccccccHHHHHccccccEEEEEEccccEEEEEEEEEccccccccEEEEEEEEccccEccccccccccccEEEEEEEEEEccccccccEEEEEEEcccEEEEEcccccccccHHHHHHHHccccccccccccEEEEEEEEcccccccc
MGAAGSKLEKAlgdqfpegeryfglenfgntcycnsvLQALYFCVPFREQLLDYYsnnknlgdaEENLLTCLADLFTQIRAQKkktgviapkRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEkeeaaksdpessspsektangptnglangvrkeplvTWVHKNFQGILTNETRCLRCETVTARDETFFDlsldieqnssiTSCLknfsstetlnaedkfFCDKCCSLQEAQKRmkikksphTLVIHLKRFKYIEQLGRYKKLSYRVVFPlelklsntaedadiEYSLFAVVVHvgsgpnhgHYVSLVKSHnhwlffddenvemidESAVQTFFGSaqeyssntdhGYILFYEslgagsnks
mgaagsklekalgdqfpEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKkktgviapkrfvQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEaaksdpessspsektangptnglangvrkEPLVTWVHKNfqgiltnetrclRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQkrmkikksphtlviHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYeslgagsnks
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILekeeaaksdpessspsekTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
******************GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL******************************VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL*******
*****************EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN****GDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL*******************************RKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILF****G******
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKE*******************PTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
***************FP*GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEA*************TA*GPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q8LAM0365 Ubiquitin carboxyl-termin yes no 0.981 0.991 0.874 0.0
O24454371 Ubiquitin carboxyl-termin no no 0.983 0.978 0.877 0.0
Q5RBQ4366 Ubiquitin carboxyl-termin yes no 0.945 0.953 0.597 1e-123
P62069366 Ubiquitin carboxyl-termin yes no 0.945 0.953 0.597 1e-123
P62068366 Ubiquitin carboxyl-termin yes no 0.945 0.953 0.597 1e-123
A4FUN7371 Ubiquitin carboxyl-termin yes no 0.948 0.943 0.594 1e-121
C0HB46372 Ubiquitin carboxyl-termin N/A no 0.951 0.943 0.589 1e-121
A5WWB0370 Ubiquitin carboxyl-termin no no 0.937 0.935 0.588 1e-121
Q9D9M2370 Ubiquitin carboxyl-termin no no 0.945 0.943 0.589 1e-121
A5D9H7369 Ubiquitin carboxyl-termin no no 0.937 0.937 0.583 1e-120
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2 Back     alignment and function desciption
 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/366 (87%), Positives = 339/366 (92%), Gaps = 4/366 (1%)

Query: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
           MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFC PFREQLL++Y+NNK 
Sbjct: 1   MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNK- 59

Query: 61  LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
             DAEENLLTCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+L
Sbjct: 60  -ADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYL 118

Query: 121 LNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179
           LNELV+ILEKE +A K+D E+SS  EK AN     LANGV KEP+VTWVHK FQGILTNE
Sbjct: 119 LNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNE 178

Query: 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ 239
           TRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AEDKFFCDKCCSLQEAQ
Sbjct: 179 TRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQ 238

Query: 240 KRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED-ADIEYSLFAV 298
           KRMKIKK PH LVIHLKRFKY+EQLGRYKKLSYRVVFPLELKLSNT ++  DIEYSLFAV
Sbjct: 239 KRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVDEYVDIEYSLFAV 298

Query: 299 VVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILF 358
           VVHVGSGPNHGHYVSLVKSHNHWLFFDDE+VE+I+ESAVQTFFGS+QEYSSNTDHGYIL 
Sbjct: 299 VVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEIIEESAVQTFFGSSQEYSSNTDHGYILL 358

Query: 359 YESLGA 364
           YESLG 
Sbjct: 359 YESLGT 364
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1 Back     alignment and function description
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1 Back     alignment and function description
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1 Back     alignment and function description
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a PE=2 SV=1 Back     alignment and function description
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12 PE=2 SV=1 Back     alignment and function description
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46 PE=3 SV=2 Back     alignment and function description
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2 Back     alignment and function description
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
224093752370 predicted protein [Populus trichocarpa] 1.0 0.997 0.929 0.0
224081136370 predicted protein [Populus trichocarpa] 1.0 0.997 0.929 0.0
255580900369 Ubiquitin carboxyl-terminal hydrolase, p 0.997 0.997 0.935 0.0
356540277369 PREDICTED: ubiquitin carboxyl-terminal h 0.991 0.991 0.923 0.0
225468498369 PREDICTED: ubiquitin carboxyl-terminal h 0.986 0.986 0.934 0.0
356512699369 PREDICTED: ubiquitin carboxyl-terminal h 0.991 0.991 0.920 0.0
356525469369 PREDICTED: ubiquitin carboxyl-terminal h 0.991 0.991 0.918 0.0
449438831369 PREDICTED: ubiquitin carboxyl-terminal h 0.997 0.997 0.921 0.0
147810044366 hypothetical protein VITISV_006756 [Viti 0.978 0.986 0.926 0.0
356525471383 PREDICTED: ubiquitin carboxyl-terminal h 0.991 0.955 0.884 0.0
>gi|224093752|ref|XP_002309976.1| predicted protein [Populus trichocarpa] gi|222852879|gb|EEE90426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/370 (92%), Positives = 356/370 (96%), Gaps = 1/370 (0%)

Query: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
           MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFC PFREQLL+YY+N+KN
Sbjct: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCAPFREQLLEYYANSKN 60

Query: 61  LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
           +GDAEENLLTCLADLFTQI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL
Sbjct: 61  IGDAEENLLTCLADLFTQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120

Query: 121 LNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179
           LNELVDILEKE +A KS+ E+SSP EKTANGP +  ANGV KEPLVTWVHKNFQGILTNE
Sbjct: 121 LNELVDILEKEAQAVKSETETSSPPEKTANGPKHAQANGVSKEPLVTWVHKNFQGILTNE 180

Query: 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ 239
           TRCL+CETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ
Sbjct: 181 TRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ 240

Query: 240 KRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVV 299
           KRMKIKK PH LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT EDADIEYSLFAVV
Sbjct: 241 KRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVV 300

Query: 300 VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY 359
           VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY
Sbjct: 301 VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY 360

Query: 360 ESLGAGSNKS 369
           ES+GA +NKS
Sbjct: 361 ESIGASNNKS 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224081136|ref|XP_002306306.1| predicted protein [Populus trichocarpa] gi|222855755|gb|EEE93302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580900|ref|XP_002531269.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223529154|gb|EEF31133.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356540277|ref|XP_003538616.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225468498|ref|XP_002270407.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512699|ref|XP_003525054.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356525469|ref|XP_003531347.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449438831|ref|XP_004137191.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] gi|449524412|ref|XP_004169217.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147810044|emb|CAN67091.1| hypothetical protein VITISV_006756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525471|ref|XP_003531348.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2140074371 UBP3 "ubiquitin-specific prote 0.983 0.978 0.850 3.7e-167
UNIPROTKB|P62068366 USP46 "Ubiquitin carboxyl-term 0.945 0.953 0.591 9.7e-112
UNIPROTKB|Q5RBQ4366 USP46 "Ubiquitin carboxyl-term 0.945 0.953 0.591 9.7e-112
MGI|MGI:1916977366 Usp46 "ubiquitin specific pept 0.945 0.953 0.591 9.7e-112
RGD|1564808366 Usp46 "ubiquitin specific pept 0.945 0.953 0.591 9.7e-112
UNIPROTKB|E1C8J6366 USP46 "Ubiquitin carboxyl-term 0.945 0.953 0.589 2e-111
UNIPROTKB|F1M625365 Usp46 "Ubiquitin carboxyl-term 0.945 0.956 0.589 2.6e-111
UNIPROTKB|F1MZM8382 USP46 "Ubiquitin carboxyl-term 0.943 0.910 0.590 3.3e-111
UNIPROTKB|I3LLE9354 USP46 "Uncharacterized protein 0.943 0.983 0.590 3.3e-111
MGI|MGI:1270128370 Usp12 "ubiquitin specific pept 0.945 0.943 0.586 7.8e-110
TAIR|locus:2140074 UBP3 "ubiquitin-specific protease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1626 (577.4 bits), Expect = 3.7e-167, P = 3.7e-167
 Identities = 313/368 (85%), Positives = 328/368 (89%)

Query:     1 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
             MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFCVPFREQLL+YY++NK+
Sbjct:     1 MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKS 60

Query:    61 LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
             + DAEENL+TCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+L
Sbjct:    61 VADAEENLMTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYL 120

Query:   121 LNELVDILXXXXXXXXXXXXXXXXXXT---ANGPTNGLANGV-RKEPLVTWVHKNFQGIL 176
             LNE+VDIL                      ANG     ANGV  KEP+VTWVH  FQGIL
Sbjct:   121 LNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGIL 180

Query:   177 TNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQ 236
             TNETRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AEDKFFCDKCCSLQ
Sbjct:   181 TNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQ 240

Query:   237 EAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED-ADIEYSL 295
             EAQKRMKIKK PH LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT E  AD+EYSL
Sbjct:   241 EAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEPYADVEYSL 300

Query:   296 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGY 355
             FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI+ESAVQTFFGS+QEYSSNTDHGY
Sbjct:   301 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGY 360

Query:   356 ILFYESLG 363
             ILFYESLG
Sbjct:   361 ILFYESLG 368
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0005634 "nucleus" evidence=IDA
UNIPROTKB|P62068 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBQ4 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1916977 Usp46 "ubiquitin specific peptidase 46" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1564808 Usp46 "ubiquitin specific peptidase 46" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8J6 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1M625 Usp46 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZM8 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLE9 USP46 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1270128 Usp12 "ubiquitin specific peptidase 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5M981UB12B_XENLA3, ., 4, ., 1, 9, ., 1, 20.58350.94570.9432N/Ano
A4FUN7UBP12_DANRE3, ., 4, ., 1, 9, ., 1, 20.59450.94850.9433yesno
Q52KZ6UB12A_XENLA3, ., 4, ., 1, 9, ., 1, 20.57990.93490.9324N/Ano
P62068UBP46_HUMAN3, ., 4, ., 1, 9, ., 1, 20.59720.94570.9535yesno
P62069UBP46_MOUSE3, ., 4, ., 1, 9, ., 1, 20.59720.94570.9535yesno
O24454UBP3_ARATH3, ., 4, ., 1, 9, ., 1, 20.87770.98370.9784nono
P34547UBPX_CAEEL3, ., 4, ., 1, 9, ., 1, 20.49130.97830.8474yesno
Q8LAM0UBP4_ARATH3, ., 4, ., 1, 9, ., 1, 20.87430.98100.9917yesno
C0HB46UBP12_SALSA3, ., 4, ., 1, 9, ., 1, 20.58900.95120.9435N/Ano
Q5RBQ4UBP46_PONAB3, ., 4, ., 1, 9, ., 1, 20.59720.94570.9535yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.998
3rd Layer3.4.19.120.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-180
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-100
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 5e-61
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 2e-58
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 8e-52
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-46
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-45
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 8e-44
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-43
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 4e-42
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-40
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 2e-36
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 4e-33
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-31
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 3e-26
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 3e-24
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-23
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-19
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 9e-19
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 3e-18
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-12
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 7e-11
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 4e-07
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 1e-06
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-06
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 8e-06
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-05
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 8e-04
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 8e-04
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 0.001
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  502 bits (1294), Expect = e-180
 Identities = 207/340 (60%), Positives = 240/340 (70%), Gaps = 43/340 (12%)

Query: 24  GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQK 83
           GLENFGNTCYCNSVLQALYF                      ENLLTCL DLF  I  QK
Sbjct: 1   GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQK 38

Query: 84  KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSP 143
           K+TGVI+PK+F+ RLK++NELF +YMHQDAHEFLNFLLNE+ +IL+ E  A+      + 
Sbjct: 39  KRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLN- 97

Query: 144 SEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE 203
                        N    EP  TWVH+ FQGILTNETRCL CETV++RDETF DLS+D+E
Sbjct: 98  -------------NNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVE 144

Query: 204 QNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 263
           QN+SITSCL+ FS+TETL   +KF+CD+CCSLQEA+KRMKIKK P  L +HLKRFKY EQ
Sbjct: 145 QNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ 204

Query: 264 LGRYKKLSYRVVFPLELKLSNT---AEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNH 320
           L RY KL YRVVFPLEL+L NT   AE+ D  Y L AVVVH+G GPNHGHYVS+VKSH  
Sbjct: 205 LNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGG 264

Query: 321 WLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360
           WL FDDE VE IDE+AV+ FFG     S N    Y+LFY+
Sbjct: 265 WLLFDDETVEKIDENAVEEFFG----DSPNQATAYVLFYQ 300

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.96
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.92
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.95
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 98.0
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.62
KOG3556724 consensus Familial cylindromatosis protein [Genera 97.49
PF08715320 Viral_protease: Papain like viral protease; InterP 96.32
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 96.18
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 88.93
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=4.7e-62  Score=439.38  Aligned_cols=297  Identities=69%  Similarity=1.160  Sum_probs=262.1

Q ss_pred             ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540           24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE  103 (369)
Q Consensus        24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~  103 (369)
                      ||.|+||||||||+||+|++                      .+++.+|+.||.+|+........++|..|+.++....+
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~   58 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE   58 (300)
T ss_pred             CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence            89999999999999999987                      45888999999999998766677999999999999889


Q ss_pred             ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540          104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL  183 (369)
Q Consensus       104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~  183 (369)
                      .|..+.||||+|||..||+.|++++............              ...........++|.++|.|.+...++|.
T Consensus        59 ~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~F~G~~~~~~~C~  124 (300)
T cd02663          59 LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRK--------------LNNNNNAEPQPTWVHEIFQGILTNETRCL  124 (300)
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHhhccccccc--------------ccccccCCcCCCChhhhCceEEEeeEEeC
Confidence            9999999999999999999999999876443221100              00111222345789999999999999999


Q ss_pred             CCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeecc
Q 017540          184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ  263 (369)
Q Consensus       184 ~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~  263 (369)
                      .|+..+...++|..|+|+++...+|+++|+.++.+|.+.+++.+.|++|+....+.++..|.++|++|+|+|+||.++..
T Consensus       125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~  204 (300)
T cd02663         125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ  204 (300)
T ss_pred             CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccccccceeecCcccccCCCCC---CCCceEEEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeChhhHHhh
Q 017540          264 LGRYKKLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTF  340 (369)
Q Consensus       264 ~~~~~K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~~~v~~~  340 (369)
                      .+...|+...|.||..|++..+.+   .....|+|+|||+|.|.+.++|||+||+|.+++|++|||+.|+++++++|.+.
T Consensus       205 ~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~  284 (300)
T cd02663         205 LNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEF  284 (300)
T ss_pred             cCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHh
Confidence            667899999999999999987642   35679999999999998789999999999999999999999999999999987


Q ss_pred             hcCcccCCCCCCceEEEEEE
Q 017540          341 FGSAQEYSSNTDHGYILFYE  360 (369)
Q Consensus       341 ~~~~~~~~~~~~~~y~l~Y~  360 (369)
                      +++.    ....+||||||+
T Consensus       285 ~~~~----~~~~~aYiLfY~  300 (300)
T cd02663         285 FGDS----PNQATAYVLFYQ  300 (300)
T ss_pred             cCCC----CCCCceEEEEeC
Confidence            6542    237899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 2e-27
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 3e-27
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 4e-27
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-26
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 6e-26
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 5e-24
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 2e-23
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 2e-23
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 4e-21
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 5e-20
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 5e-20
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 4e-19
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 5e-19
2f1z_A522 Crystal Structure Of Hausp Length = 522 7e-19
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-18
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 7e-18
3ihp_A 854 Covalent Ubiquitin-Usp5 Complex Length = 854 1e-05
3ihp_A854 Covalent Ubiquitin-Usp5 Complex Length = 854 7e-04
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 3e-05
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 3e-04
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 152/374 (40%), Gaps = 57/374 (15%)
Query: 19  GERYFGLENFGNTCYCNSVLQALYFCVPFREQLL--DYYSNNKNLGDAEENLLTCLADLF 76
           G  + GL N GNTC+ N+VLQ L    P R+  L  D+       G A+E L    AD+ 
Sbjct: 13  GSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVI 71
Query: 77  TQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXX 136
             +         + P RF    +K    F  Y  QDA EFL  L+  L            
Sbjct: 72  GAL-WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERL--------HLEI 122
Query: 137 XXXXXXXXXXTANGPTNGL---ANGVRKEPLVT--------W----------VHKNFQGI 175
                      ANGP          + +EP ++        W          +   F G 
Sbjct: 123 NRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQ 182
Query: 176 LTNETRCLRCETVTARDETFFDLSLDIEQNS------SITSCLKNFSSTETLNAEDKFFC 229
           L +  +C  C   +   E F DLSL I +        S+  C   F+  E L +E+   C
Sbjct: 183 LKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVC 242
Query: 230 DKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSNTAED 288
           D+C     + K++ +++ P  LV+HL RF      G  KK S  V FPL+ L L + A D
Sbjct: 243 DRCRQKTRSTKKLTVQRFPRILVLHLNRFS--ASRGSIKKSSVGVDFPLQRLSLGDFASD 300
Query: 289 --ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQE 346
                 Y L+A+  H GS  ++GHY +L +    W  ++D  V  + E+ V         
Sbjct: 301 KAGSPVYQLYALCNHSGSV-HYGHYTALCRCQTGWHVYNDSRVSPVSENQVA-------- 351
Query: 347 YSSNTDHGYILFYE 360
               +  GY+LFY+
Sbjct: 352 ----SSEGYVLFYQ 361
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-105
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-104
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-102
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-101
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-91
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 5e-89
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 6e-86
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-78
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 3e-55
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 6e-18
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 9e-13
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  313 bits (803), Expect = e-105
 Identities = 93/348 (26%), Positives = 149/348 (42%), Gaps = 29/348 (8%)

Query: 24  GLENFGNTCYCNSVLQALYFCVPFREQLL--DYYSNNKNLGDAEENLLTCLADLFTQIRA 81
           GL N GNTC+ NS+LQ L      R+  L   Y  +  +  +A   L+   A L   I  
Sbjct: 11  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70

Query: 82  QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESS 141
                 V++P  F  ++++    F  Y  QDA EFL FLL+ L + + +          +
Sbjct: 71  SSP-NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129

Query: 142 SPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLD 201
                            + +E   + +   F G L +   C  C   +   + F+DLSL 
Sbjct: 130 LDHLPDDEKGRQMWRKYLERED--SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLP 187

Query: 202 IEQNS----SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR 257
           I +      ++  C++ F+  + L+ ++K  C +C   +   K+  I++ P  LV+HLKR
Sbjct: 188 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 247

Query: 258 FKYIEQLGRYKKLSYRVVFP---LELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSL 314
           F       R  KL+  V FP   L+L+   +       Y+L+AV  H G+    GHY + 
Sbjct: 248 FSESR--IRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGT-TMGGHYTAY 304

Query: 315 VKSH--NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360
            +S     W  F+D +V  +  S V+            T   Y+LFYE
Sbjct: 305 CRSPGTGEWHTFNDSSVTPMSSSQVR------------TSDAYLLFYE 340
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.97
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.58
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 96.91
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 94.19
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.2e-63  Score=459.85  Aligned_cols=328  Identities=29%  Similarity=0.500  Sum_probs=266.5

Q ss_pred             CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC----CCCcchhhHHHHHHHHHHHHHhcccCCCccChHH
Q 017540           18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK----NLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKR   93 (369)
Q Consensus        18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~   93 (369)
                      ..++++||.|+||||||||+||+|+++|+|+++++.......    ........++.+|+.||..|+.+..  ..++|..
T Consensus         4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P~~   81 (367)
T 2y6e_A            4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPRM   81 (367)
T ss_dssp             CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSC--SEECCHH
T ss_pred             CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCC--CCcCHHH
Confidence            445699999999999999999999999999999987432111    1112345799999999999998654  3499999


Q ss_pred             HHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCC-C---CCCCCcCCccccccc
Q 017540           94 FVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN-G---LANGVRKEPLVTWVH  169 (369)
Q Consensus        94 ~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~i~  169 (369)
                      |+..++...+.|..+.||||+|||.+||+.|++++......   + .....  ...+... .   .++........++|.
T Consensus        82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~---~-~~~~~--~~~g~~~~~~a~~~w~~~~~~~~s~i~  155 (367)
T 2y6e_A           82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK---P-YLELK--DANGRPDAVVAKEAWENHRLRNDSVIV  155 (367)
T ss_dssp             HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSC---C-CCCCC--CCCSCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccC---C-ccccc--cccCCchhHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999886432110   0 00000  0000000 0   000000112457899


Q ss_pred             cccceeEeeeeeecCCCCccccccceeecCcccccC-------------------ccHHHHHHhcCccceecCCCccccc
Q 017540          170 KNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCD  230 (369)
Q Consensus       170 ~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~C~  230 (369)
                      ++|+|.+.+.++|..|++.+...++|+.|+|++|..                   .+|+++|+.++.+|.+++++.+.|+
T Consensus       156 ~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~  235 (367)
T 2y6e_A          156 DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCP  235 (367)
T ss_dssp             HHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred             cccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCC
Confidence            999999999999999999999999999999999752                   5899999999999999999999999


Q ss_pred             ccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCc-ccccCCCCCC---CCceEEEEEEEEeecCCC
Q 017540          231 KCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGP  306 (369)
Q Consensus       231 ~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~~vi~H~G~~~  306 (369)
                      +|+....+.++..|.++|++|+|+|+||.++..  ...|+...|.||. .|||..++..   ....|+|+|||+|.|. .
T Consensus       236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~  312 (367)
T 2y6e_A          236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRY--WRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-M  312 (367)
T ss_dssp             TTTEEECCEEEEEEEECCSEEEEEEECEEECSS--CEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-S
T ss_pred             CCCCCceEEEEEEEecCCcEEEEEEeCeeecCc--cceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-C
Confidence            999999999999999999999999999998754  5689999999997 6999998854   4689999999999998 8


Q ss_pred             CCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCCCCC
Q 017540          307 NHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNK  368 (369)
Q Consensus       307 ~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~~~~  368 (369)
                      ++|||+||+|.  +++||+|||+.|+++++++|.            ..+||||||+|.+....+
T Consensus       313 ~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~~~~~~  364 (367)
T 2y6e_A          313 GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIV------------TKAAYVLFYQRRDDEFYK  364 (367)
T ss_dssp             SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTS------------STTEEEEEEEECCC----
T ss_pred             CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcC------------CCCcEEEEEEEcCCCCCC
Confidence            99999999998  689999999999999999998            789999999999876543
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 4e-59
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 4e-54
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-47
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-44
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-28
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (489), Expect = 4e-59
 Identities = 97/355 (27%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 19  GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY----YSNNKNLGDAEENLLTCLAD 74
           G    GL N GNTCY NS+LQ L       +           N  NL   +  +      
Sbjct: 12  GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGI 71

Query: 75  LFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAA 134
           +   +     +   I+PK F   + K N+ F  Y  QD+ E L FL++ L + L K +  
Sbjct: 72  IMKAL--WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129

Query: 135 KSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDET 194
           K   E ++          +       K+   + +   FQG   +  +CL C   +   E 
Sbjct: 130 KRYKEENNDHLDDFKAAEHAWQK--HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEA 187

Query: 195 FFDLSLDIEQ--NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLV 252
           F  LSL +      ++  CL+ FS  E L   ++F+C  C + +++ K+++I K P  L+
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 247

Query: 253 IHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT---AEDADIEYSLFAVVVHVGSGPNHG 309
           +HLKRF Y  +  + K  +        L LS      ++   +Y+LF+V  H G   + G
Sbjct: 248 VHLKRFSYDGR-WKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG-LDGG 305

Query: 310 HYVSLVK--SHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 362
           HY +  K  +   W  FDD  V  I  S+V+            +   YILFY SL
Sbjct: 306 HYTAYCKNAARQRWFKFDDHEVSDISVSSVK------------SSAAYILFYTSL 348
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 92.32
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-58  Score=423.47  Aligned_cols=305  Identities=26%  Similarity=0.452  Sum_probs=260.3

Q ss_pred             CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHH
Q 017540           18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR   97 (369)
Q Consensus        18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~   97 (369)
                      +-|+++||.|+||||||||+||+|+++|+|+++++.....   ......++..+|+.+|..|+.+..   ++.+..+...
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~---~~~~~~~~~~~l~~lf~~l~~~~~---~~~~~~~~~~   75 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GDDSSKSVPLALQRVFYELQHSDK---PVGTKKLTKS   75 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT---TCCTTTCHHHHHHHHHHHHHHCSS---CBCCHHHHHH
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc---CCcccchHHHHHHHHHHHHhcCCC---CcChHHHHHh
Confidence            3467999999999999999999999999999999875432   233456789999999999998653   3778888776


Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEe
Q 017540           98 LKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT  177 (369)
Q Consensus        98 l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~  177 (369)
                      +.  ...+..+.||||+||+..||+.|++++...                               ...+.|.++|.|.+.
T Consensus        76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~  122 (347)
T d1nbfa_          76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMV  122 (347)
T ss_dssp             TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEE
T ss_pred             hc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhc-------------------------------cccccccceeceEEE
Confidence            64  345778899999999999999999877432                               134679999999999


Q ss_pred             eeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeee
Q 017540          178 NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR  257 (369)
Q Consensus       178 ~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R  257 (369)
                      ..+.|..|++.+...+++..|+|+++...++.++|+.++.++.+++.+.+.|..| ....+.++..|.++|++|+|+|+|
T Consensus       123 ~~~~C~~C~~~s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~R  201 (347)
T d1nbfa_         123 SYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMR  201 (347)
T ss_dssp             EEEEESSSCCEEEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEEC
T ss_pred             EeEEeCCccceeeeeccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeee
Confidence            9999999999999999999999999999999999999999999998776666655 556788889999999999999999


Q ss_pred             eeeeccccccccccceeecCcccccCCCCCC----CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCccee
Q 017540          258 FKYIEQLGRYKKLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEM  331 (369)
Q Consensus       258 ~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~  331 (369)
                      |.++..++...|+...|.||..|||..++..    ...+|+|.|||+|.|. ..+|||+||+|.  +++|++|||+.|++
T Consensus       202 f~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~  280 (347)
T d1nbfa_         202 FMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSR  280 (347)
T ss_dssp             EEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEEEEEEEECTTSSSCCEEEETTEEEE
T ss_pred             eeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCCEEEEeeecCCCCEEEEEECCceEE
Confidence            9999888889999999999999999988743    4678999999999998 699999999996  67999999999999


Q ss_pred             eChhhHHhhhcCcccCC---CCCCceEEEEEEEeC
Q 017540          332 IDESAVQTFFGSAQEYS---SNTDHGYILFYESLG  363 (369)
Q Consensus       332 v~~~~v~~~~~~~~~~~---~~~~~~y~l~Y~r~~  363 (369)
                      +++++|++...|+....   ....+||||||+|.+
T Consensus       281 v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~  315 (347)
T d1nbfa_         281 CTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES  315 (347)
T ss_dssp             CCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGG
T ss_pred             CCHHHHHHhhcCCCccccccCCCCCEEEEEEEecC
Confidence            99999997654433221   124579999999986
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure