Citrus Sinensis ID: 017603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccEcccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHcccccccccccHHHEEEEEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHcHHcHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSSVLNTVLSTRLsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaasgssfnqlLGIKGAAQETNKWKIRlqltkpvtwppliwgIVCGaaasgnfhwNLEDVAKSIVCMImsgpcltgytqtiNDWYDREIDainepyrpipsgaisenEVITQIWVLLLAGLGLAGlldvwaghdfptIFWLAVGGSLLSYiysapplklkqngwignFALGasyislpwwagqalfgtltpDIIVLTLLYSIAGLGIAIVNDfksvegdramglqslpvafgpetaKWICVGAIDITQISVaaslptqiristrdsrpltsdidqLRCFAEVLftddsrnayngqmslmhkfspdklcf
Flexible Loop (DISEMBL)
mssvlntvlstrlsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAaslptqiristrdsrpltsdidQLRCFAEVLFTDDSRNAYNGQMslmhkfspdklcf
Low Complexity Region (SEG)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVlllaglglagllDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Disordered region (IsUnstruct)
**********************************************************************LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRD*RPLTSDIDQLRCFAEVLFTDDS*********************
Disordered Region (DISOPRED)
***********************************************************************************WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Disordered Region (DISEMBL)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQE*******************SSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Disordered Region (DISPRO)
**********************************F***R**VR***********************************QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q38833	387	Chlorophyll synthase, chl	yes	no	0.850	0.811	0.772	1e-139
Q9M3W5	378	Chlorophyll synthase, chl	N/A	no	0.772	0.753	0.837	1e-133
Q5W6H5	376	Chlorophyll synthase, chl	yes	no	0.769	0.755	0.850	1e-132
P33326	310	Bacteriochlorophyll synth	yes	no	0.609	0.725	0.418	3e-43
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.582	0.711	0.362	4e-33
P26170	304	Bacteriochlorophyll synth	yes	no	0.596	0.723	0.365	7e-33
Q5JDN5	277	Digeranylgeranylglyceryl	yes	no	0.682	0.909	0.287	2e-13
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.582	0.778	0.261	5e-13
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.579	0.775	0.295	6e-13
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.420	0.551	0.313	2e-12

>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/329 (77%), Positives = 281/329 (85%), Gaps = 15/329 (4%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query: 287 LPVAFGPETAKWICVGAIDITQISVAASL 315
           LPVAFG ETAKWICVGAIDITQ+SVA  L
Sbjct: 300 LPVAFGTETAKWICVGAIDITQLSVAGYL 328

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1

 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/290 (83%), Positives = 261/290 (90%), Gaps = 5/290 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEV--KPQAPDKAPAASGSSFNQLLGIKGAAQETNKWK 85
           P S++ +RRR    V A + +A E   KP  PDKAPAA GSSFNQLLGIKGA QETN WK
Sbjct: 31  PSSLTLNRRRSFPVVCAADADAKETTKKPTIPDKAPAA-GSSFNQLLGIKGAKQETNIWK 89

Query: 86  IRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWY 145
           IRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDV KSIVCM+MSGPCLTGYTQTINDWY
Sbjct: 90  IRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWY 149

Query: 146 DREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGG 205
           DR+IDAINEPYRPIPSGAISENEVITQIWVLLL GLGL  LLD+WAGHDFP IF+LA+GG
Sbjct: 150 DRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALLDIWAGHDFPIIFYLALGG 209

Query: 206 SLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGL 265
           SLLSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGL
Sbjct: 210 SLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYSIAGL 269

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315
           GIAIVNDFKS+EGDR +GLQSLPVAFG ETAKWICVGAIDITQ+SVAA L
Sbjct: 270 GIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDITQLSVAAYL 319

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a with either geranylgeranyldiphosphate (GGPP) or phytyldiphosphate (PhyPP). May also use with a lower efficiency the monophosphates GGMP and PhyMP, but not the non-phosphorylated alcohols geranylgeraniol and phytol. The tetraprenyl diphosphate must bind to the enzyme as the first substrate and esterification occurs when this pre-loaded enzyme meets the second substrate, chlorophyllide.

Avena sativa (taxid: 4498)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/288 (85%), Positives = 259/288 (89%), Gaps = 4/288 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIR 87
           P S+  +RRR    VRA E +  E K  AP+KAPA  GSSFNQLLGIKGA QE + WKIR
Sbjct: 32  PSSLRLNRRRHFQVVRAAETD-KETKANAPEKAPAG-GSSFNQLLGIKGAKQENDIWKIR 89

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           LQLTKPVTWPPL+WG++CGAAASGNFHW +EDVAKSIVCMIMSGPCLTGYTQTINDWYDR
Sbjct: 90  LQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 149

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           +IDAINEPYRPIPSGAISENEVITQIW LLLAGLGL  LLDVWAGHDFP IF+LAVGGSL
Sbjct: 150 DIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWAGHDFPIIFYLAVGGSL 209

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGI 267
           LSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGLGI
Sbjct: 210 LSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGI 269

Query: 268 AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315
           AIVNDFKSVEGDRA+GLQSLPVAFG ETAKWICVGAIDITQ+SVA  L
Sbjct: 270 AIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVAGYL 317

Involved in one of the last steps of the biosynthesis of chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P33326|BCHG_CHLAA Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 135/234 (57%), Gaps = 9/234 (3%)

Query: 79  QETNKWKIR-LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGY 137
           Q    W +R +QL KPVTW    W  +CGA ASG   WN E + + ++ M M+GP L G 
Sbjct: 23  QSRYAWLVRSIQLMKPVTWFAPTWAFMCGAIASGALGWN-ESIGRLLLGMFMAGPILCGL 81

Query: 138 TQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
           +Q +ND+ DRE+DAINEP+R IPSG +S   V     VL   G  +A  L          
Sbjct: 82  SQVVNDYADREVDAINEPHRLIPSGQVSLRHVYILTAVLTWIGASIALFLGR------QV 135

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT 257
            F++A+G  + +  YS  P++ K+NGWIGN  +  SY  L W AG A F  LT + + + 
Sbjct: 136 AFFVALG-LVFALAYSLRPIRGKRNGWIGNALVAISYEGLAWMAGHAAFAPLTGESVTIA 194

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311
           LLYS+   GI  VNDFKS+ GD  MG++S+PV +G   A  + V  + + QI+V
Sbjct: 195 LLYSLGAHGIMTVNDFKSIRGDTIMGIRSIPVQYGKVMAARMVVTTMGVAQIAV 248

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 11/226 (4%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           L+L +P+TW P IW  +CG  + G   W  E     ++ M+++GP + G +Q  N+W DR
Sbjct: 19  LELIQPITWFPPIWAYLCGTVSVGI--WPGEKWPLVLLGMVLAGPLVCGMSQAANNWCDR 76

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
            +DA+NEP RPIPSG I     +    ++ +  L +  +L  W        F   V G L
Sbjct: 77  HVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLGPWG-------FGATVFGVL 129

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT--LLYSIAGL 265
            ++ YS  P++LK++GW G   +   Y  LPW+ G A+     P   ++T  LLY+    
Sbjct: 130 AAWAYSVEPIRLKRSGWWGPGLVALCYEGLPWFTGAAVLSAGAPSFFIVTVALLYAFGAH 189

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311
           GI  +NDFK++EGDR  G++SLPV  GPE A  +    + + QI V
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILV 235

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 18/238 (7%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  L+L KPVTW P +W  +CGA +S    W  E+    ++ ++++GP + G +Q  NDW
Sbjct: 17  RAMLELIKPVTWFPPMWAYLCGAVSSNVPIW--ENKGVVVLGIVLAGPIVCGMSQAANDW 74

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLA-GLGLAGLLDVWAGHDFPTIFWLAV 203
            DR +DAINEP+RPIPSG I        +W L +A  + L  L+  W    +   F   +
Sbjct: 75  CDRHVDAINEPHRPIPSGRIP------GLWGLYIAIAMSLLSLVVGWQLGSWG--FVATL 126

Query: 204 GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD------IIVLT 257
            G   ++ YS  P++LK++GW G   +G +Y  LPW  G A+    T D      I+++ 
Sbjct: 127 LGVAAAWAYSVEPIRLKRSGWWGPGLVGLAYEGLPWITGAAVL-LATADTSPGFPIVMMA 185

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315
            LY++   GI  +NDFK++EGDR +G++SLP  +GPE A  I    + + Q  V   L
Sbjct: 186 TLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLAQALVITML 243

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1957 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 30/282 (10%)

Query: 83  KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSI-VCMIMSGPCLTGYTQTI 141
           ++K  +++T+P     L+ GIV G   S      L ++  +I V +++   C  G   TI
Sbjct: 2   EFKAFIEITRPHNC--LLAGIV-GVLGSIVAAGGLPELKTAILVFLVVFLGCAGG--NTI 56

Query: 142 NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
           ND++D EID IN P RP+P GA+S    +     L   G+ LA  +++W        F L
Sbjct: 57  NDYFDYEIDKINRPERPLPRGAMSRKAALWYSVALFATGIVLAWFINIWD-------FLL 109

Query: 202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA-----LFGTLTPDIIVL 256
           A+   +  +IY+    KLK   +IGN  + +   + P +   A     L GTL     + 
Sbjct: 110 AIVAYVTMFIYA---WKLKPMPFIGNVVVASLTGATPLYGAIAVGEIGLAGTLA----LC 162

Query: 257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP 316
             L ++A     ++ D + +EGD A G ++LP+  G + A +  VGA+      VA+ LP
Sbjct: 163 AFLVNVAR---EVIKDIEDIEGDMAKGAKTLPILIGRKRAAY--VGALFAILTVVASFLP 217

Query: 317 TQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSL 358
            +  I       L  D   L     +L + D   A+  Q+ L
Sbjct: 218 IKAGIGLGYLAMLPVDAVILYSAFLILRSQDRETAHRAQILL 259

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL 183
           ++ ++++  C  G   TIND++D EID IN P RP+P GA+     +    +L   GL L
Sbjct: 41  LIFLVVTVGCAGG--NTINDYFDYEIDKINRPERPLPRGAMGRKVALYYSMLLFAVGLAL 98

Query: 184 AGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ 243
           A +++++A       F L V   +  +IY+    KLK   ++GN  +     + P +   
Sbjct: 99  AYMINIYA-------FILGVIAYVTMFIYA---WKLKPLPFVGNIVVAGLTGATPLYGAV 148

Query: 244 ALFGT-LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
           A+    L   + +   L ++A     ++ D + VEGD A G ++LP+ +G + A +  VG
Sbjct: 149 AVEHLGLAGYLAICAFLVNVAR---EVIKDIEDVEGDMAKGAKTLPIIWGKKRAAY--VG 203

Query: 303 AIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQ 355
            +      +A+ LP +  +       +  D+  L     +L   D   A+  Q
Sbjct: 204 VLFALLTVIASFLPVKASVGVGYYAMVPVDLLILYAAYLILRNQDREVAHKSQ 256

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 26/240 (10%)

Query: 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL 183
           +V +++S  C  G   TIND++D EID IN P RP+P GA+     +     L   GL L
Sbjct: 41  LVFLVVSLGCAGG--NTINDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLAL 98

Query: 184 AGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ 243
           A L+ + A       F  A+   +  ++Y+    KLK   +IGN A+ A     P +   
Sbjct: 99  ALLISLKA-------FAFALLAYITMFLYA---WKLKPLPFIGNIAVAALTGVTPLYGAI 148

Query: 244 A-----LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298
           A     L GTL     V   L ++A     IV D + VEGD   G ++LP+  G   A +
Sbjct: 149 AVGKIGLAGTLA----VCAFLVNVAR---EIVKDIEDVEGDLKKGAKTLPIILGRRKAAY 201

Query: 299 ICVGAIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSL 358
             V A       +A+ LP +  +       +  D+  L     +L   D + A+  Q+ L
Sbjct: 202 --VAAFFGVATVIASFLPVKAGVGVGYYAMVPVDLIILYAVYLILRNQDEKTAHRSQLLL 259

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    +ND++D EID +N+P RPIPSG IS    +     L + G+ LA L++   G 
Sbjct: 55  VTGAGNGLNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLVNPLCG- 113

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTL-TP 251
                  +A+  S++  +Y+     LK+  + GN ++G  Y++   +  G A+FG     
Sbjct: 114 ------IIALFNSMVLILYAQ---SLKRTPFFGNASVG--YLTGSTFLFGGAVFGMAGLQ 162

Query: 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
            ++VL LL ++A +   IV D + + GD+  G ++LP+  G + A +I 
Sbjct: 163 ALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKKASYIA 211

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
338173751	374	chlorophyll synthase [Camellia sinensis]	0.850	0.839	0.873	1e-152
449461765	373	PREDICTED: chlorophyll synthase, chlorop	0.850	0.841	0.869	1e-149
225439386	370	PREDICTED: chlorophyll synthase, chlorop	0.840	0.837	0.863	1e-148
356568120	377	PREDICTED: chlorophyll synthase, chlorop	0.853	0.835	0.830	1e-146
358248480	377	uncharacterized protein LOC100787459 [Gl	0.853	0.835	0.833	1e-146
224087768	372	predicted protein [Populus trichocarpa]	0.848	0.841	0.841	1e-145
228535376	373	chlorophyll synthase [Nicotiana tabacum]	0.850	0.841	0.828	1e-142
228535374	373	chlorophyll synthase [Nicotiana tabacum]	0.850	0.841	0.831	1e-142
356559140	378	PREDICTED: chlorophyll synthase, chlorop	0.853	0.833	0.815	1e-141
255579324	344	bacteriochlorophyll synthase, putative [	0.761	0.816	0.897	1e-139

>gi|338173751|gb|AEI83422.1| chlorophyll synthase [Camellia sinensis]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/316 (87%), Positives = 297/316 (93%), Gaps = 2/316 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN K TNR+RTR V  P+S+S +RRRLTVRA E +ANE +K +APDK
Sbjct: 1   MASLLNTVSSIRLSNAK-TNRLRTRTVPPPISLSLTRRRLTVRATETDANEAIKAEAPDK 59

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           AP ASGSSFNQLLGIKGA QET+KWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW L+D
Sbjct: 60  APVASGSSFNQLLGIKGAKQETDKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTLDD 119

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCM+MSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 
Sbjct: 120 VAKSIVCMLMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLG 179

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGW+GNFALGASYISLPW
Sbjct: 180 GLGLAGLLDVWAGHDFPTIFYLAIGGSLLSYIYSAPPLKLKQNGWLGNFALGASYISLPW 239

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWI 299

Query: 300 CVGAIDITQISVAASL 315
           CVGAID+TQ+SVA  L
Sbjct: 300 CVGAIDVTQLSVAGYL 315

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461765|ref|XP_004148612.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus] gi|449517004|ref|XP_004165536.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/315 (86%), Positives = 292/315 (92%), Gaps = 1/315 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+  LNT+ S RLS++ + NRVR +  LSPVSVSFSRRRL+V A E +ANEVK +A DKA
Sbjct: 1   MALTLNTLPSLRLSSIHA-NRVRFQSSLSPVSVSFSRRRLSVVAAETDANEVKSKASDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PA  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW +EDV
Sbjct: 60  PAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTIEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSI CM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL G
Sbjct: 120 AKSIACMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFPT+F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGLLDVWAGHDFPTVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWIC 299

Query: 301 VGAIDITQISVAASL 315
           VGAIDITQ+SVA  L
Sbjct: 300 VGAIDITQLSVAGYL 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439386|ref|XP_002263271.1| PREDICTED: chlorophyll synthase, chloroplastic [Vitis vinifera] gi|296083177|emb|CBI22813.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/316 (86%), Positives = 291/316 (92%), Gaps = 6/316 (1%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN ++T R      L P+S+S  RRRL VRA E +ANE VK QAPDK
Sbjct: 1   MASLLNTVSSVRLSNARTTPRF-----LPPISLSLHRRRLVVRAAETDANEAVKSQAPDK 55

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           APA SGS+FNQLLGIKGAA+ETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWNLED
Sbjct: 56  APAGSGSNFNQLLGIKGAAKETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLED 115

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCMIMSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIW+LLL 
Sbjct: 116 VAKSIVCMIMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLG 175

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW
Sbjct: 176 GLGLAGLLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 235

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTL PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 236 WAGQALFGTLNPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWI 295

Query: 300 CVGAIDITQISVAASL 315
           CVGAIDITQ+SVA  L
Sbjct: 296 CVGAIDITQLSVAGYL 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568120|ref|XP_003552261.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Glycine max]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/318 (83%), Positives = 290/318 (91%), Gaps = 3/318 (0%)

Query: 1   MSSVLNTV-LSTRLS--NVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V + +R+S  +   T  +++RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPSRISPSSHTRTTSLQSRPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GTAPSKDGSSFNQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTMNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAK 300

Query: 298 WICVGAIDITQISVAASL 315
           WICVGAIDITQ+SVA  L
Sbjct: 301 WICVGAIDITQLSVAGYL 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248480|ref|NP_001239633.1| uncharacterized protein LOC100787459 [Glycine max] gi|255647387|gb|ACU24159.1| unknown [Glycine max]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/318 (83%), Positives = 287/318 (90%), Gaps = 3/318 (0%)

Query: 1   MSSVLNTV-LSTRLSNVKSTN--RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V +  R+S    T    ++ RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPPRISPTSHTRIASLQARPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAK 300

Query: 298 WICVGAIDITQISVAASL 315
           WICVGAIDITQ+SVA  L
Sbjct: 301 WICVGAIDITQLSVAGYL 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087768|ref|XP_002308227.1| predicted protein [Populus trichocarpa] gi|118486377|gb|ABK95029.1| unknown [Populus trichocarpa] gi|222854203|gb|EEE91750.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/315 (84%), Positives = 289/315 (91%), Gaps = 2/315 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+SVLN+ LS  LSN KS  RVRT  ++SP+S+  +RRR+T+RA + + NEVKPQAP   
Sbjct: 1   MASVLNSALSLNLSNFKS-KRVRTHSLVSPLSLPLTRRRVTIRAADTDTNEVKPQAPVSG 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
             A GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNF+W LEDV
Sbjct: 60  -GAGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFNWTLEDV 118

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTIND+YDREIDAINEPYRPIPSGAISENEVITQ+WVLLL G
Sbjct: 119 AKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQLWVLLLGG 178

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 179 LGLAGLLDVWAGHDFPVVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 238

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 239 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWIC 298

Query: 301 VGAIDITQISVAASL 315
           VGAIDITQ+S+A  L
Sbjct: 299 VGAIDITQLSIAGYL 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535376|gb|ACQ44245.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/315 (82%), Positives = 283/315 (89%), Gaps = 1/315 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +S SRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSLSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKS+VCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSVVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAMGLQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAASL 315
           VGAIDITQISVA  L
Sbjct: 300 VGAIDITQISVAGYL 314

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535374|gb|ACQ44244.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/315 (83%), Positives = 283/315 (89%), Gaps = 1/315 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +SFSRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSFSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAM LQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMRLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAASL 315
           VGAIDITQISVA  L
Sbjct: 300 VGAIDITQISVAGYL 314

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559140|ref|XP_003547859.1| PREDICTED: chlorophyll synthase, chloroplastic-like isoform 1 [Glycine max]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/319 (81%), Positives = 284/319 (89%), Gaps = 4/319 (1%)

Query: 1   MSSVLNTV-LSTRLSNVKST--NRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQA 56
           M+S+LN V +  R+S    T    ++ RPVL   SVSFSRRR ++RA E + NE ++ QA
Sbjct: 1   MASLLNMVSVPPRISPTSHTRITSLQARPVLPAFSVSFSRRRQSIRATETDTNEAIQSQA 60

Query: 57  PDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWN 116
           P  AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN
Sbjct: 61  PGAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWN 120

Query: 117 LEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL 176
            EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYR IPSGAISENEVITQIWVL
Sbjct: 121 FEDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRSIPSGAISENEVITQIWVL 180

Query: 177 LLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236
           LL GL LAG+LD+WAGHDFP +F+LAVGG++LSYIYSAPPLKLKQNGWIGNFALGASYIS
Sbjct: 181 LLGGLSLAGILDIWAGHDFPIVFYLAVGGAILSYIYSAPPLKLKQNGWIGNFALGASYIS 240

Query: 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
           LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA
Sbjct: 241 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETA 300

Query: 297 KWICVGAIDITQISVAASL 315
           KWICVGAIDITQ+SVA  L
Sbjct: 301 KWICVGAIDITQLSVAGYL 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579324|ref|XP_002530507.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223529964|gb|EEF31891.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/283 (89%), Positives = 268/283 (94%), Gaps = 2/283 (0%)

Query: 35  FSRRRLTVRAQEPNANEVKPQAPDKAPAASGSS--FNQLLGIKGAAQETNKWKIRLQLTK 92
           FS RRLT+RA E +ANEVKP+APDKAPA+S     FNQLLGIKGAAQETNKWKIRLQLTK
Sbjct: 3   FSGRRLTIRATETDANEVKPEAPDKAPASSSGGSSFNQLLGIKGAAQETNKWKIRLQLTK 62

Query: 93  PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI 152
           PVTWPPL+WG+VCGAAASGNFHWNLEDVAKS+VCM+MSGP LTGYTQTIND+YDREIDAI
Sbjct: 63  PVTWPPLVWGVVCGAAASGNFHWNLEDVAKSVVCMLMSGPFLTGYTQTINDYYDREIDAI 122

Query: 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIY 212
           NEPYRPIPSGAISE+EVITQIWVLLL GLGL GLLDVWAGHDFP +F+LA+GGSLLSYIY
Sbjct: 123 NEPYRPIPSGAISESEVITQIWVLLLGGLGLGGLLDVWAGHDFPIVFYLALGGSLLSYIY 182

Query: 213 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND 272
           SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND
Sbjct: 183 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND 242

Query: 273 FKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315
           FKS+EGDRAMGLQSLPVAFG ETAKWICVGAIDITQISVA  L
Sbjct: 243 FKSIEGDRAMGLQSLPVAFGAETAKWICVGAIDITQISVAGYL 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.850	0.811	0.744	1.1e-128
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.482	0.434	0.279	1.9e-07
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.626	0.587	0.266	3.9e-07
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.506	0.475	0.257	1.1e-06
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.479	0.434	0.272	1.9e-06
TIGR_CMR|DET_0401	306	DET_0401 "1,4-dihydroxy-2-naph	0.268	0.323	0.267	5.4e-05
UNIPROTKB|Q9KVP7	284	ubiA "4-hydroxybenzoate octapr	0.590	0.767	0.231	0.00048
TIGR_CMR|VC_0094	284	VC_0094 "4-hydroxybenzoate oct	0.590	0.767	0.231	0.00048

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 245/329 (74%), Positives = 270/329 (82%)

Query:     1 MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
             M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct:     1 MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query:    47 PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
              + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct:    61 TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query:   107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
             AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct:   120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query:   167 NEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
              EVITQ+WV            DVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct:   180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query:   227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
             NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct:   240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query:   287 LPVAFGPETAKWICVGAIDITQISVAASL 315
             LPVAFG ETAKWICVGAIDITQ+SVA  L
Sbjct:   300 LPVAFGTETAKWICVGAIDITQLSVAGYL 328

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 55/197 (27%), Positives = 86/197 (43%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   164 CIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNV-----VIITASSLILGLGFAWIV 218

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIG--NFALGASYI-SLPWWAGQ--AL 245
               +P +FW      +++  Y+   P L+ K+   +   NF    +   SL ++      +
Sbjct:   219 DSWP-LFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCV 277

Query:   246 FG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
             F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV 
Sbjct:   278 FKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVS 337

Query:   303 AIDITQ---ISVAASLP 316
              +++T    I V A+ P
Sbjct:   338 LLEMTYGVTILVGATSP 354

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 69/259 (26%), Positives = 105/259 (40%)

Query:    76 GAAQETNKWKIRLQLTKPVTW----PPLIWGIVCGAAA--SGNFHWNLEDVAKSIVCMIM 129
             GAA+  +    R+   +   W    P  I G   G+ A  +     N   +  S+V   +
Sbjct:    82 GAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKAL 141

Query:   130 SGP----CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXX 185
             SG     C  GY   IN  YD  ID +N+PY PI +G +S    +   W+          
Sbjct:   142 SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWLLVIFFAIAGL 197

Query:   186 XXDVWAGHDF-PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL-----PW 239
                   G +F P I  L   G  L  IYS PPL++K+   +  F + A+          +
Sbjct:   198 LV---VGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFP-VAAFLIIATVRGFLLNFGVY 253

Query:   240 WAGQALFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
              A +A  G     +  +  +T   ++  L IAI  D   VEGDR   + +L    G    
Sbjct:   254 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNI 313

Query:   297 KWICVGAIDITQISVAASL 315
              ++  G + +  +S A SL
Sbjct:   314 AFLGSGLLLVNYVS-AISL 331

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 54/210 (25%), Positives = 88/210 (41%)

Query:   120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXX 179
             + +++V  +M    + G    +N   D EID +N+PY P+ SG  S N   T I +    
Sbjct:   138 ILEAVVAALMMNIYIVG----LNQLSDVEIDKVNKPYLPLASGEYSVN---TGIAIVASF 190

Query:   180 XXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASY 234
                       W    +P +FW      +L   YS   P L+ K+   +      A+ A  
Sbjct:   191 SIMSFWLG--WIVGSWP-LFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAII 247

Query:   235 ISLPWWAG-QA-LFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV 289
             + + ++   Q  +FG     T  +I  T   S   + IA+  D   +EGD+  G++S  V
Sbjct:   248 VQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSV 307

Query:   290 AFGPETAKWICVGAIDITQ---ISVAASLP 316
               G +   W CV  + +     I V A+ P
Sbjct:   308 TLGQKRVFWTCVTLLQMAYAVAILVGATSP 337

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 54/198 (27%), Positives = 83/198 (41%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   161 CIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNV-----VIITASSLILGLGFAWIV 215

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQN------GWIGNFALGASYISLPWWAGQA 244
               +P +FW      + +  Y+   P L+ K+        +I N A+  S +         
Sbjct:   216 GSWP-LFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRS-LGFFLHMQTC 273

Query:   245 LFG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             +F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   302 GAIDITQ---ISVAASLP 316
               +++     I V A+ P
Sbjct:   334 SLLEMAYGVTILVGATSP 351

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|DET_0401 DET_0401 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 123 (48.4 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 27/101 (26%), Positives = 53/101 (52%)

Query:   198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVL 256
             + W+AV G+ +S +YSA P++L  +G +G   +   Y   L  W      G +  D++++
Sbjct:   129 VMWIAVIGAAISILYSAKPMRLAYHG-LGELMMLIGYGPVLTAWGYFVHTGMVNRDVLLI 187

Query:   257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
              ++  +    + ++N+    + DRA G ++L    GP+ AK
Sbjct:   188 GVIPGLCMWAMILINEIPDYQEDRAAGKRNLTYRLGPKNAK 228

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

UNIPROTKB|Q9KVP7 ubiA "4-hydroxybenzoate octaprenyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
 Identities = 57/246 (23%), Positives = 109/246 (44%)

Query:    84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
             W++ +++ +P+    L+W  +     +      L D+ + +V  ++    +      IND
Sbjct:    10 WQL-MRMDRPIGSLLLLWPTLWALLLAAQ---GLPDL-RVLVVFVLGVFLMRSAGCVIND 64

Query:   144 WYDREIDAI--NEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWL 201
             + DR +D        RP+P+G +S  E +    +            +        TI  L
Sbjct:    65 YADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTL------TI-QL 117

Query:   202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI-SLPW-WAGQALFGTLTPDIIVLTLL 259
             +  G LL+++Y   P  +K+   +    LG ++  S+P  WA QA   TLTP + VL L+
Sbjct:   118 SFIGILLAFVY---PF-MKRFTHLPQLVLGLAFSWSIPMAWAAQA--NTLTPQVWVLFLI 171

Query:   260 YSIAGLGIAIVNDFKSVEGDR--AMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT 317
              ++    IA    +  V+ D    +G++S  + FG    K I +G + +  +S+  +L  
Sbjct:   172 NAL--WTIAYDTQYAMVDRDDDVKIGIKSTAILFG-RWDKRI-IGLLQLATLSLLVALGQ 227

Query:   318 QIRIST 323
              + + T
Sbjct:   228 GLALGT 233

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

TIGR_CMR|VC_0094 VC_0094 "4-hydroxybenzoate octaprenyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
 Identities = 57/246 (23%), Positives = 109/246 (44%)

Query:    84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
             W++ +++ +P+    L+W  +     +      L D+ + +V  ++    +      IND
Sbjct:    10 WQL-MRMDRPIGSLLLLWPTLWALLLAAQ---GLPDL-RVLVVFVLGVFLMRSAGCVIND 64

Query:   144 WYDREIDAI--NEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWL 201
             + DR +D        RP+P+G +S  E +    +            +        TI  L
Sbjct:    65 YADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTL------TI-QL 117

Query:   202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI-SLPW-WAGQALFGTLTPDIIVLTLL 259
             +  G LL+++Y   P  +K+   +    LG ++  S+P  WA QA   TLTP + VL L+
Sbjct:   118 SFIGILLAFVY---PF-MKRFTHLPQLVLGLAFSWSIPMAWAAQA--NTLTPQVWVLFLI 171

Query:   260 YSIAGLGIAIVNDFKSVEGDR--AMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT 317
              ++    IA    +  V+ D    +G++S  + FG    K I +G + +  +S+  +L  
Sbjct:   172 NAL--WTIAYDTQYAMVDRDDDVKIGIKSTAILFG-RWDKRI-IGLLQLATLSLLVALGQ 227

Query:   318 QIRIST 323
              + + T
Sbjct:   228 GLALGT 233


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      369       357   0.00080  117 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  249 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.57u 0.10s 26.67t   Elapsed:  00:00:01
  Total cpu time:  26.57u 0.10s 26.67t   Elapsed:  00:00:01
  Start:  Mon May 20 19:43:10 2013   End:  Mon May 20 19:43:11 2013

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W6H5	CHLG_ORYSJ	2, ., 5, ., 1, ., 6, 2	0.8506	0.7696	0.7553	yes	no
Q9M3W5	CHLG_AVESA	2, ., 5, ., 1, ., 6, 2	0.8379	0.7723	0.7539	N/A	no
Q38833	CHLG_ARATH	2, ., 5, ., 1, ., 6, 2	0.7720	0.8509	0.8113	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.62	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.0
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-164
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-132
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-102
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-50
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	8e-44
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	6e-32
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-23
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	4e-22
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	1e-20
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	1e-19
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-15
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	8e-13
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	2e-11
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	2e-10
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	3e-09
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	4e-09
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	1e-08
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	5e-08
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	1e-06
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	2e-06
PRK12871	297	PRK12871, ubiA, prenyltransferase; Reviewed	2e-06
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	3e-06
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	1e-05
PLN02922	315	PLN02922, PLN02922, prenyltransferase	7e-05
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	1e-04
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	1e-04
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	3e-04
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	8e-04
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	9e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.001
PRK13362	306	PRK13362, PRK13362, protoheme IX farnesyltransfera	0.003

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score =  576 bits (1487), Expect = 0.0
 Identities = 248/314 (78%), Positives = 276/314 (87%), Gaps = 2/314 (0%)

Query: 4   VLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAA 63
           V +  L++ +  ++++ R R     S +S    RRRL VRA E + ++VK QAPDKAP  
Sbjct: 3   VADRSLASSMQALRASARSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEK 62

Query: 64  S--GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVA 121
           S  GS+ NQLLGIKGAAQET+ WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW LEDVA
Sbjct: 63  SDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTLEDVA 122

Query: 122 KSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGL 181
           KSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL GL
Sbjct: 123 KSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL 182

Query: 182 GLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241
           GLA  LDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGN+ALGASYISLPWWA
Sbjct: 183 GLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA 242

Query: 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           GQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWICV
Sbjct: 243 GQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Query: 302 GAIDITQISVAASL 315
           G+IDITQ+SVA  L
Sbjct: 303 GSIDITQLSVAGYL 316

Length = 375

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score =  460 bits (1185), Expect = e-164
 Identities = 196/249 (78%), Positives = 222/249 (89%), Gaps = 1/249 (0%)

Query: 70  QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMI 128
           QLLGIKGAA  ETN WKIRLQL KP+TW PLIWG+VCGAAASGNFHW+LEDVAK+ +CM+
Sbjct: 1   QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCML 60

Query: 129 MSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +SGPCLTGYTQTIND+YDR+IDAINEPYRPIPSGAISE EVITQI +L +AG+ +A +LD
Sbjct: 61  LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILD 120

Query: 189 VWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT 248
           +WAGH+FP +F LA+ GS +++IYSAPPLKLKQNGW+GNFALGASYI+LPWWAG ALFG 
Sbjct: 121 LWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGE 180

Query: 249 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308
           L PDI VLTL+YSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA WICVGAIDI Q
Sbjct: 181 LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240

Query: 309 ISVAASLPT 317
             +AA L  
Sbjct: 241 GLIAAYLLA 249

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score =  379 bits (976), Expect = e-132
 Identities = 137/258 (53%), Positives = 175/258 (67%), Gaps = 9/258 (3%)

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
               + S   QLLG KGA+  T+ WK RLQL KP+TW P +W  +CGA +SG F W LE+
Sbjct: 3   EALENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLEN 62

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           V K +  M+++GP L G +QT+ND++DRE+DAINEPYRPIPSGAIS   V+  I VL + 
Sbjct: 63  VLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVL 122

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GL +A LL  W       +F  A+ G  L++IYSAPPL+LKQNGW+GN+A+G SY  LPW
Sbjct: 123 GLAVAYLLGPW-------VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW 175

Query: 240 WAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           WAG A FG   P   I++L LLYS+   GI  +NDFKSVEGDR +GL+SLPV FG + A 
Sbjct: 176 WAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAA 235

Query: 298 WICVGAIDITQISVAASL 315
            I    ID+ Q++V A L
Sbjct: 236 RIACVVIDLFQLAVIALL 253

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score =  304 bits (779), Expect = e-102
 Identities = 110/231 (47%), Positives = 145/231 (62%), Gaps = 6/231 (2%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  ++L KPVTW P IW   CGA ASG      E     ++ M+M+GP  TG++Q+IND+
Sbjct: 1   RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDY 60

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVG 204
           +DR++DAINEP RPIPSG IS  EV     VL +AGL +A +L  W       I    V 
Sbjct: 61  FDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWL------IVLFTVV 114

Query: 205 GSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           G +L+ IYS PP+KLK+NGW+G  A+G SY  LPW AG A+F  LT   +V+ L+YS+  
Sbjct: 115 GIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGA 174

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315
            GI  +NDFKSVEGDR +GL+SLPV  G + A  + V  I++ Q  V   L
Sbjct: 175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLL 225

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score =  172 bits (437), Expect = 1e-50
 Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 3/215 (1%)

Query: 81  TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
            +K +  L+L  PVTW  +   +  G  ASG     L D    +   +M GP  TG++Q+
Sbjct: 9   VDKIRAHLELLDPVTWISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS 68

Query: 141 INDWYDREIDAINEPYRPIPSGAISENE-VITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           +ND++D E+D +NEP RPIPSG +SE E +   I VLLLA +GL   L +  G +   + 
Sbjct: 69  VNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLA-IGLGVWLGLHIGGERGMVI 127

Query: 200 WLAV-GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
             ++  G  ++YIYSAPPLKLK+N      A+G SY  + + +  ALF  + P+++ L  
Sbjct: 128 ISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAG 187

Query: 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293
           L     + + I+NDFKSVEGD+  GL+SL V  G 
Sbjct: 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222

Length = 331

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  152 bits (387), Expect = 8e-44
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 17/220 (7%)

Query: 84  WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
               L+L +P+    L+   + G   + +   +L+ +  + +               IND
Sbjct: 13  LLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFF----LARSAGYVIND 68

Query: 144 WYDREIDAINEP--YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
             DREID IN     RP+PSG +S  E +    +LLL GL LA LL+  A       F L
Sbjct: 69  LADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA-------FLL 121

Query: 202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYS 261
           ++   +L+  Y      LK+  ++    LG ++         A+ G+L     +L L   
Sbjct: 122 SLAALVLALAY----PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAI 177

Query: 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           +  LG  I+   + +EGDR  GL+SLPV FG + A  + +
Sbjct: 178 LWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL 217

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score =  120 bits (303), Expect = 6e-32
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 13/222 (5%)

Query: 98  PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP 155
           PL    V    A          +   ++  ++    L      +ND++D EIDA   N+P
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALL---LLQAAGNVLNDYFDYEIDADNPNKP 58

Query: 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAP 215
            RP+PSG IS  E +     LLL GL LA LL          +  L + G LL  +YS P
Sbjct: 59  DRPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLLYS-P 110

Query: 216 PLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS 275
           PL+LK+   +G   +G ++  L      A+ G +   +++L L   +  L I + ND + 
Sbjct: 111 PLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRD 170

Query: 276 VEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT 317
           VEGDR  G+++LPV  G + A  +    +    + +   L  
Sbjct: 171 VEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLL 212

Length = 259

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 15/182 (8%)

Query: 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD 194
           TG    IND++DREID IN P RPIPSGA+S    +    +L  AG+ LA LL       
Sbjct: 51  TGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLA- 109

Query: 195 FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP-DI 253
                 +A+  SLL  +Y+     LK    +GN ++     S  +  G A  GT     +
Sbjct: 110 ------IALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLLAL 159

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAA 313
           +VL  L ++A L   I+ D + +EGDRA G ++LP+  G   A ++         ++VAA
Sbjct: 160 LVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAA---FLLVAVAA 216

Query: 314 SL 315
           S 
Sbjct: 217 SP 218

Length = 276

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 94.3 bits (235), Expect = 4e-22
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 19/178 (10%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
            +G    +ND++D E+D IN P RPIPSG IS  E +    +L + GL  A L+   A  
Sbjct: 49  ASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLA-- 106

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGN----FALGASYISLPWWAGQALFGTL 249
                F + +  S+L  +Y+    KLK+ G IGN    F  G ++I      G    G L
Sbjct: 107 -----FLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI-----FGGIAVGEL 153

Query: 250 TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307
              +I+L  +  +  LG  I+ D + VEGDR  G ++L + +G + A  I      + 
Sbjct: 154 NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA 211

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%)

Query: 100 IWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158
           I  I+    AS          +A  +V ++            IND YD EID IN+P RP
Sbjct: 20  IGAIIGYLIASNFKIDLKGIILAALVVFLV------CAGGNVINDIYDIEIDKINKPERP 73

Query: 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLK 218
           IPSG IS  E       L + GL L+  ++++A       F +A+  S+L Y+Y+     
Sbjct: 74  IPSGRISLKEAKIFSITLFIVGLILSIFINIYA-------FLIALLNSILLYLYA---KD 123

Query: 219 LKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG 278
           LK+ G IGN  + A    L +  G      +   II+L L    +     IV D + +EG
Sbjct: 124 LKKTGLIGNL-IVAYLTGLSFIFGGLAVFNVLR-IIILFLCAFFSTWSREIVKDIEDIEG 181

Query: 279 DRAMGLQSLPVAFGPETAKWICVGAIDIT 307
           D    + +LP+ +G + + +I    + + 
Sbjct: 182 DLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 87.1 bits (216), Expect = 1e-19
 Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 24/224 (10%)

Query: 140 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           TIND++D EID IN P RP+P GA+S    +    +L   GL LA L+++ A       F
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-------F 107

Query: 200 WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA-----LFGTLTPDII 254
             A+G  +L ++Y+    KLK   +IGN  +     + P +   A     L G L     
Sbjct: 108 LFALGAYVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA---- 160

Query: 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS 314
           +   L ++A     I+ D + +EGD+A G ++LP+  G + A +I  GAI      +A+ 
Sbjct: 161 ICAFLVNVAR---EIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYI--GAIFGVLTVIASF 215

Query: 315 LPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSL 358
           LP +  I       +  D   L     VL   D   A+ GQ  L
Sbjct: 216 LPVKAGIGLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQKLL 259

Length = 277

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 31/210 (14%)

Query: 100 IWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTG--YTQTINDWYDREIDAINEPYR 157
           + G+   A A+ +    L ++   +   I    CL G  Y   +N   D EID IN+P+ 
Sbjct: 32  VLGLYLIAIAASSNTIALANLGLLLGAWI---ACLCGNVYIVGLNQLTDIEIDRINKPHL 88

Query: 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPP 216
           P+ +G  S  +    + +  +  L LA LL  W          + VG SLL    YS PP
Sbjct: 89  PLAAGEFSRRQGQRIVIITGILALILAALLGPW--------LLITVGISLLIGTAYSLPP 140

Query: 217 LKLKQ------------NGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           ++LK+             G I N  L   ++   W  G +    + P + +LTL   +  
Sbjct: 141 IRLKRFPLLAALCIFTVRGVIVNLGL---FLHFQWLLGGS--VLIPPTVWLLTLFVLVFT 195

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294
             IAI  D   +EGDR   + +  +  G +
Sbjct: 196 FAIAIFKDIPDMEGDRQYQITTFTLRLGKQ 225

Length = 308

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 51/175 (29%), Positives = 69/175 (39%), Gaps = 22/175 (12%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL-AGLLDVWAG 192
              Y   IN   D E D IN+P R       SE +      +L + GL L A LL V  G
Sbjct: 50  AAVYI--INYLTDLEEDIINKPER----VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGG 103

Query: 193 HDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWAGQALFGTL-- 249
              P    + +   +L  +YS     +LK+     N       +SL W     + G    
Sbjct: 104 ---PKFALIFIIPLILGILYSVFFKRRLKRIPLFKNL-----VVSLLWALSPLILGVYYY 155

Query: 250 TPDIIVLTLLYS----IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
              I  L LLY+    +      IV D K +EGDR  GL++LP+  G E      
Sbjct: 156 QLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL 210

Length = 285

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 52/237 (21%)

Query: 83  KWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
             K  LQLTKP     L+     G   A  G+ +  L      ++  ++ G    G    
Sbjct: 17  TIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLL------LLLTLLGGALGAGGAGA 70

Query: 141 INDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW-AGHDFPT 197
            N + DR+IDA+ E    RP+ +G IS  E +    VL +AG  L   L    A      
Sbjct: 71  FNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAA----- 125

Query: 198 IFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGASYISLPWWAG-QALFGTLT 250
              L + G +  Y  +Y+   L LK    QN  IG FA GA    +P   G  A+ G+++
Sbjct: 126 --VLGLFG-IFFYVVVYT---LWLKRRTPQNIVIGGFA-GA----MPPLIGWAAVTGSIS 174

Query: 251 PDIIVLTLL---------YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298
              I+L  +         +++A   +   +D+K      A G+  LPV  G    K 
Sbjct: 175 LGAILLFAIIFLWTPPHFWALA---LKYKDDYK------AAGIPMLPVVKGERRTKR 222

Length = 304

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 19/166 (11%)

Query: 140 TINDWYDREIDAIN--EPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
             N   DR IDA N     RP+ SG IS+ E  T I + L   L  +  L+  A      
Sbjct: 54  AFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLA------ 107

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT----LTPDI 253
            F L+    L+  IY       K+  ++ ++ LG++Y   P     A+ GT    L   +
Sbjct: 108 -FILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGLAPLAGWVAVIGTISFFLVAWL 162

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           + + + + IAG  +  +   +  E DR  GL S+P  FG + A  I
Sbjct: 163 LGIGVGFWIAGFDL--IYAIQDYEFDRKNGLHSIPARFGIKAALKI 206

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAG 192
            +  Y   +N  YD EID +N+PY P+ SG  S    +  +    +   G+  ++  W  
Sbjct: 34  LMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWP- 92

Query: 193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASYISLPWWA--GQAL 245
                +FW      +L   YS   P L+ K++         A+ A  + L ++      +
Sbjct: 93  -----LFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHV 147

Query: 246 FG---TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
            G     T  +I  T       + IA+  D   VEGDR  G++S  V  G +   W+CV 
Sbjct: 148 LGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVN 207

Query: 303 AIDI---TQISVAASLPT 317
            +++     I V AS   
Sbjct: 208 LLEMAYAAAILVGASSSF 225

Length = 280

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 29/219 (13%)

Query: 92  KPVTWP----PLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYD 146
           KP+       P +W ++  A A G    + L       + M  +G C       IND +D
Sbjct: 12  KPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAG-C------VINDIWD 64

Query: 147 REIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVG 204
           R+ D   E    RP+ SGA+S  + I  + V LL  LG+   L+       P    L V 
Sbjct: 65  RDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLN-------PLTILLGVA 117

Query: 205 GSLLSYIYSAPPLKLKQNGWIGNFALGA--SYISLPWWAGQALFGTLTPDIIVLTLLYSI 262
              L   Y   P  +K+  +     LG    + +L  WA  A+ G L+    VL L   +
Sbjct: 118 SLALVATY---PF-MKRITYWPQLVLGLAFGWGALMGWA--AVTGDLSTAAWVLYLANIL 171

Query: 263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             LG   +   +  E D  +G++S  + FG  T  W+  
Sbjct: 172 WTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG 210

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 33/226 (14%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAA-ASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
           K  LQLTKP     L+     G   A G    N   +  +++   ++           N 
Sbjct: 1   KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAA----ASANAFNM 56

Query: 144 WYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
           + DR+ID   +    RP+ +G IS  E +   + LLL  LG+A L    A  +       
Sbjct: 57  YIDRDIDKKMKRTRNRPLVTGRISPREAL--AFGLLLGVLGVAIL---AAFVNPLAALLG 111

Query: 202 AVGGSLLSYIYSAPPLKLK--QNGWIGNFALGASYISLPWWAG-QALFGTLTPDIIVLTL 258
             G      +Y+   LK +  QN  IG FA GA    +P   G  A+ G+++    +L  
Sbjct: 112 LFGIFFYVIVYTI-WLKRRTPQNTVIGGFA-GA----VPPLIGWAAVTGSISLGAWLLFA 165

Query: 259 LYSI------AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298
           +  +        L +   +D+      RA G+  LPV  G    K 
Sbjct: 166 IIFLWQPPHFWALALKYKDDY------RAAGIPMLPVVKGERITKR 205

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 141 INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFW 200
           +ND +D + D +N             +  +    V L   L LA LL +      P   W
Sbjct: 64  VNDVFDADTDELNPKKDREREVRYRGDRRVLVA-VALSGALALAFLLVL------PPAAW 116

Query: 201 LAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALF-GTLTPDIIVLTL 258
            A+   L LS  YSAPPL+ K    + +      YI LP  A  AL  G+L P + V   
Sbjct: 117 PALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLYI-LPGVAAYALVSGSLPPLLAVAGG 174

Query: 259 LYSIAGLGI--AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
                G+    AI +    +E DRA G+++     G       C  
Sbjct: 175 WLWAMGMHTFSAIPD----IEPDRAAGIRTTATVLGERRTYAYCAA 216

Length = 282

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 77  AAQETNKWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCL 134
           ++      K  L LTKP      ++  + G   A  G     L      ++  ++    +
Sbjct: 3   SSSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLL------LLLTLLGIALV 56

Query: 135 TGYTQTINDWYDREIDAI-----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDV 189
            G    +N++ DR+IDA      N   RP+ +G IS  E +    VL + G  L GL   
Sbjct: 57  AGAAGALNNYIDRDIDAKMERTKN---RPLVTGRISPREALIFGLVLGVLGFLLLGLFVN 113

Query: 190 W-AGHDFPTIFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGA 232
             A        WL + G +  Y  +Y+   L LK    QN  IG  A GA
Sbjct: 114 PLAA-------WLTLAG-IFFYVVVYT---LWLKRRTPQNIVIGGAA-GA 151

Length = 296

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 27/233 (11%)

Query: 79  QETNKWKIRLQLTKPVTWP----PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCL 134
           Q+T+K ++ L+L +P T P    P+I G         +F+        +++ +I +    
Sbjct: 3   QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLALIAAILLQ 57

Query: 135 TGYTQTINDWYD--REIDAINEPYRPIPSGAISENEVIT-QIWVLLLAGL-GLAGLLDVW 190
                  ND++D  +  D  + P R   SG I    +    I  L L  L GLA L  + 
Sbjct: 58  IL-VNLANDYFDYKKGTDT-HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVIL 115

Query: 191 AGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG--ASYISLPWWAGQALFGT 248
           A      +  L +       +Y+  P  L   G++G   LG     +          +  
Sbjct: 116 AALSDWLVLLLGLLCIAAGILYTGGPFPL---GYMG---LGEIFVGVFFGPLIVLGAYYI 169

Query: 249 LTPDIIVLTLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPETAK 297
            T  +    LL S+  G+ IA +   N+ + +E D   G  +L V  G + A+
Sbjct: 170 QTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNAR 222

Length = 303

>gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 41/225 (18%)

Query: 96  WPPLIW-GIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQ--TINDWYDREIDAI 152
           WP L   G+V   A  G F W L   A  I         L G+     +ND+ DR+ D +
Sbjct: 20  WPLLFCSGLVLAFANYGGFSWELTIKAALI--------GLFGFEAGFVLNDYVDRKRDRL 71

Query: 153 N---------EPY--RPIPSGAISENEVITQIWV-LLLAGLGLAGLLDVWAGHDFPTIFW 200
           +          P+  RPIPSG +S         + +LLA +  A +L +   +    +F 
Sbjct: 72  DVENTLTRYWRPFKERPIPSGKLSSKNAF---ALFILLAAVTSALILTLPYPNSL-YVFV 127

Query: 201 LAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLL- 259
           + +    +   Y     K  Q   +    LG +  +L   AG   +G   PD+  L  + 
Sbjct: 128 IMLYSYGIEAFYQVK--KRNQKYPVAQL-LGRTDFTLFPAAGYLCYGQ--PDMTALLYMV 182

Query: 260 ----YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE-TAKWI 299
               +++A LG   +NDF  +E DRA G++S+ V +G + T  W+
Sbjct: 183 FFYPWTMAHLG---LNDFIDLENDRARGMKSIAVLYGMKGTMYWV 224

Length = 297

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTI 198
           N   D EIDA N     R IP+G IS+   I  I +  L  L  A  L+    +   P +
Sbjct: 62  NRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL 121

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
           F+L      L Y Y       K+   + +  LG      P  A  A+ GT+    I+L L
Sbjct: 122 FFL------LLYSYC------KRFTALAHVVLGFCLALAPLGAWIAIRGTIELPAILLGL 169

Query: 259 --LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             L+ +AG  I      + +E DR  GL S+P   G   + WI  
Sbjct: 170 AVLFWVAGFDILYA--LQDLEFDRKEGLHSIPAKLGVNGSLWIAR 212

Length = 291

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND+ DR+ D   +    RP+ SGA+SE E +    VL+L    L   L+         
Sbjct: 60  VINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLN-------TL 112

Query: 198 IFWLAVGGSLLSYIY 212
             WL+V    L++IY
Sbjct: 113 TIWLSVAALALAWIY 127

Length = 282

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 181 LGLAGLLDVWAGHDFPTI-FWLAVGGS-LLSYIYSAPPLKLKQNGW--------IGNFAL 230
           LG AGL  VWA      I   L +  + L  Y+Y  PP +L   G          G  A 
Sbjct: 108 LGAAGL--VWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLAT 165

Query: 231 GASYISLPWWAGQALFGT--LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLP 288
            A Y++L   AG +      LTP ++  ++L  +    I   + F  ++GDRA+G  S  
Sbjct: 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPL 225

Query: 289 VAFGPETAKWICVGAI 304
           V  G E    +   A+
Sbjct: 226 VRLGTEKGSRVVRWAV 241

Length = 315

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 142 NDWYDREIDAINE-----PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFP 196
           ND+ D  +D  +         PI +G ++   +      L    L L   L +  G    
Sbjct: 60  NDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV 119

Query: 197 TIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVL 256
           T+  L V    L   Y  PP  LK   W+G   +  ++  +       L      ++   
Sbjct: 120 TLALLGV---FLWTCYMGPPFFLKYR-WLGEHLVFYAWSHMLV---MGLIYVWLGNLSSP 172

Query: 257 TLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
            LL  +  GL +A+V   N+ + +E D   G+ +L V FG   A   
Sbjct: 173 NLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALY 219

Length = 296

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 108 AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRPIPSGAIS 165
           A+ G+ HW        +V + M G     +    N   DREIDA N     R + +GA+S
Sbjct: 31  ASDGSVHW----ADLLLVTVAMVG--ARTFAMAANRIIDREIDARNPRTAGRELVTGAVS 84

Query: 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWI 225
                T   V L   LG A LL+       P    LA        +Y       K+    
Sbjct: 85  VRTAWTGALVALAVFLGAAALLN-------PLCLALAPLAVAPLVVYPYA----KRFTNF 133

Query: 226 GNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
            +  LG +    P  A  A+ GT +   ++L L   +   G  ++   +  E DR +G++
Sbjct: 134 PHAILGLAQAVGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVR 193

Query: 286 SLPVAFGPETAKW 298
           S+P  FG   A W
Sbjct: 194 SVPARFGVRAALW 206

Length = 284

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 97  PPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NE 154
           P +IW +   A A              ++ +++ G   +G +   N   +R+ID +    
Sbjct: 11  PRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRT 70

Query: 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSA 214
             RP P G ++  E +     L   G  L  LL          +F +A+G    + +Y+ 
Sbjct: 71  SKRPTPVGLVNRKEALAVGSALSALGTALGFLLL----GPLTALF-IALGWFFYAVVYT- 124

Query: 215 PPLKLKQNGW----IGNFALGASYISLPWWAGQALF-GTLTPDIIVLTLL 259
             + LK   W    IG FA  A+       AG A   G+L  + ++L+ L
Sbjct: 125 --IWLKPRTWLNIVIGGFAGNAAA-----LAGYASGTGSLDLEAVLLSFL 167

Length = 279

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 24/168 (14%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLA--GLGLAGLLDVWAGHDF 195
           TIND  DR+ID   E    RPI SGA++      Q    L A   LGL  LL +   +++
Sbjct: 63  TINDLLDRDIDKKVERTKLRPIASGALTP----FQGVGFLGAQLLLGLGILLQL---NNY 115

Query: 196 PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIV 255
             I     G S L  +++ P +K           L  ++ +L  WA  A+ G+L P +++
Sbjct: 116 SRIL----GASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWA--AVKGSLDPAVVL 169

Query: 256 LTLLYSIAGLGIAIVND----FKSVEGDRAMGLQSLPVAFGPETAKWI 299
              LY  +G+   +V D     +  E D  +G++S  + FG +T  W+
Sbjct: 170 P--LY-ASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWL 214

Length = 289

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 24/148 (16%)

Query: 176 LLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG------WI--GN 227
           LL+  +G+A L   W      T+  L      L Y+Y  PP +L   G      W+  G 
Sbjct: 90  LLIGLVGIAALSWRWQI----TVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGP 145

Query: 228 FALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSL 287
            A+ A+  +           + +      ++L  +A   I   + F  VE D A G +S 
Sbjct: 146 LAIAAALYAQS--------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSP 197

Query: 288 PVAFGPETAK----WICVGAIDITQISV 311
            V  G + A     W+   +  +  I+V
Sbjct: 198 VVRLGTKLAAKIVPWVISLSYVVLLIAV 225

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 141 INDWYDREIDAINEP---YRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +ND  D E D    P    RPI SG +S +       VLL+A L LA LL 
Sbjct: 65  VNDIRDVEADR-LHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLS 114

Length = 295

>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 48/229 (20%)

Query: 88  LQLTKPVTWPPLIWGIVCGA------AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTI 141
           +Q+TKP     +I+G V         A+ G+    L   A   + ++++  C       +
Sbjct: 17  IQVTKP----GIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCA------L 66

Query: 142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           N+  DR+IDA  +    R   +G IS  E +   + L L   G  GLL  +         
Sbjct: 67  NNCIDRDIDAKMQRTRNRVTVTGEISLGEAL--GFGLALGVAGF-GLLAAFTN------- 116

Query: 200 WLAVGGSLLSY-----IYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDII 254
            LA   +   Y     +YS   L LK+N   G      S    P     A+ G      +
Sbjct: 117 PLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGAL 173

Query: 255 VLTLLYSIAGL----GIAI--VNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           +L L++S+  +     IAI   ND+       A G+  LPVA G    K
Sbjct: 174 ILLLMFSLWQMPHSYAIAIFRFNDYA------AAGIPVLPVARGIAKTK 216

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PLN02922	315	prenyltransferase	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PLN02776	341	prenyltransferase	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
PRK12872	285	ubiA prenyltransferase; Reviewed	99.97
PLN02878	280	homogentisate phytyltransferase	99.96
PRK12875	282	ubiA prenyltransferase; Reviewed	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.96
PRK08238	479	hypothetical protein; Validated	99.94
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.94
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
PRK13591	307	ubiA prenyltransferase; Provisional	99.93
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.89
KOG4581	359	consensus Predicted membrane protein [Function unk	99.79
PRK12884	279	ubiA prenyltransferase; Reviewed	89.54
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	89.5
PLN00012	375	chlorophyll synthetase; Provisional	88.31
PRK13592	299	ubiA prenyltransferase; Provisional	88.26
PRK12872	285	ubiA prenyltransferase; Reviewed	88.24
PRK13595	292	ubiA prenyltransferase; Provisional	87.64
PRK13591	307	ubiA prenyltransferase; Provisional	86.85
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	86.37
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	85.94
PRK12888	284	ubiA prenyltransferase; Reviewed	85.66
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	85.36
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.95
PRK12882	276	ubiA prenyltransferase; Reviewed	84.46
PRK12875	282	ubiA prenyltransferase; Reviewed	83.94
PRK12874	291	ubiA prenyltransferase; Reviewed	83.64
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	83.59
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	82.9
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	82.87
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	82.56
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	81.83
PRK12871	297	ubiA prenyltransferase; Reviewed	81.62
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	81.37
PRK04375	296	protoheme IX farnesyltransferase; Provisional	81.17
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	80.99
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	80.79

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=3.3e-50  Score=396.62  Aligned_cols=323  Identities=76%  Similarity=1.221  Sum_probs=270.9

Q ss_pred             cccccCCCCccccccccccceecccCCCCCCCCCCCCCCc--CCCCCcchhhhhhccccccccchHHHHHhhhCccchHH
Q 017603           21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA--PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP   98 (369)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~k~yl~l~RP~~~~l   98 (369)
                      +.+++...++.+...++||+..+.++++..+++.+++++.  +.|.++..||++|.||++.|++++|+|++++||++|..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~   99 (375)
T PLN00012         20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP   99 (375)
T ss_pred             hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence            4445555667777788889999999999999999998886  45788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHH
Q 017603           99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  178 (369)
Q Consensus        99 ~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~  178 (369)
                      .++++++|++..+.++|...++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.+
T Consensus       100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~  179 (375)
T PLN00012        100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  179 (375)
T ss_pred             HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence            99999999987777776543333345667778888999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHH
Q 017603          179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL  258 (369)
Q Consensus       179 ~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~  258 (369)
                      +++++++.+..+.++.++..+.+++++++++++||.||+++||++++||+++|..++.+|++++++++|.+++..+++++
T Consensus       180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal  259 (375)
T PLN00012        180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL  259 (375)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            88888877754443346777888888888899999999999999999999999999988887777788999999999999


Q ss_pred             HHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHH
Q 017603          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLR  337 (369)
Q Consensus       259 ~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~  337 (369)
                      ++++|..++++.||++|+|+|+++|+||+||++|.+++++++...+.+..+.++.++...  ....| ...+.+.+++++
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~--~~~~y~~~~~~l~l~~l~  337 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAI--GKPYYALALLGLIIPQIF  337 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988765555554444443321  22333 455666678888


Q ss_pred             HHHHHHhc
Q 017603          338 CFAEVLFT  345 (369)
Q Consensus       338 ~~~~~~~~  345 (369)
                      ...+.+.+
T Consensus       338 ~~~~~~~~  345 (375)
T PLN00012        338 FQFKYFLP  345 (375)
T ss_pred             HHHHHHhc
Confidence            88887765

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=5.8e-42  Score=332.74  Aligned_cols=273  Identities=51%  Similarity=0.817  Sum_probs=218.2

Q ss_pred             CcchhhhhhccccccccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 017603           65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW  144 (369)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~  144 (369)
                      .+.-||++|+|+++++++++|.|++++||+++..++++.+.|++.++.++|........++++++++.++++++|++|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~   87 (314)
T PRK07566          8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY   87 (314)
T ss_pred             ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34568999999999999999999999999999999999999988776655543111222344556677789999999999


Q ss_pred             ccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccc
Q 017603          145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW  224 (369)
Q Consensus       145 ~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~  224 (369)
                      +|+|+|++|+|+||+++|++|+++++.++.++.++++++++.+       ++....+++++.+++++||.||+++||+++
T Consensus        88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~  160 (314)
T PRK07566         88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW  160 (314)
T ss_pred             hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence            9999999999999999999999999999999999999888776       455677777888889999999999999998


Q ss_pred             hhhHHHHHHHhHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603          225 IGNFALGASYISLPWWAGQ-ALF-GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (369)
Q Consensus       225 ~g~l~vg~~~g~lp~~~~~-a~~-g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~  302 (369)
                      ++|+++|+++|.+|++++. +.. +..++..++++++.++|..++++.||++|+|+|+++|+||+|+++|++++.+++..
T Consensus       161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~  240 (314)
T PRK07566        161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV  240 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence            8999999999888866554 433 36788888888888999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603          303 AIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFT  345 (369)
Q Consensus       303 ~~~l~~l~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~  345 (369)
                      ++.+.++.++.+... .....++....++..+.++...+..++
T Consensus       241 l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~  282 (314)
T PRK07566        241 VIDLFQLAVIALLLA-WGQPLYAAIVGLLLIPQITLQDRLLRD  282 (314)
T ss_pred             HHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            766666554333222 112222223333445666666666543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=6.3e-42  Score=331.39  Aligned_cols=273  Identities=72%  Similarity=1.210  Sum_probs=221.7

Q ss_pred             hccccc-cccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 017603           73 GIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA  151 (369)
Q Consensus        73 ~~~~~~-~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~  151 (369)
                      ++++.. ++++++|+|+|++||+++..+++++++|...+++++|...+....++++++++.++++++|++|||+|+|.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~   83 (306)
T TIGR02056         4 GIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDA   83 (306)
T ss_pred             CcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Confidence            344444 6678899999999999999999999999987777776532222224455566778899999999999999999


Q ss_pred             cCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603          152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (369)
Q Consensus       152 ~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg  231 (369)
                      +|+|+||+++|++|+++++.++.++.++++++++++..+.+..++..+.+++++++.+++||.||+++||++++||+.+|
T Consensus        84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG  163 (306)
T ss_pred             cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence            99999999999999999999999999999999988765543335667888888888999999999999999988999999


Q ss_pred             HHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603          232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (369)
Q Consensus       232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~  311 (369)
                      +.++..|++++++++|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..++..+
T Consensus       164 ~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~  243 (306)
T TIGR02056       164 ASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI  243 (306)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHH
Confidence            99988888877777899999999999999999999999999999999999999999999999999998887666666555


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603          312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTD  346 (369)
Q Consensus       312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~  346 (369)
                      +.++... ....+.....++.++.+++..+.++++
T Consensus       244 ~~~~~~~-~~~~~~~ll~ll~~p~~~~~~~~~~~~  277 (306)
T TIGR02056       244 AAYLLAI-GENLYAAALVALIIPQITFQDKYFLKD  277 (306)
T ss_pred             HHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4443322 222222233444577788877766543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=4.2e-39  Score=308.70  Aligned_cols=259  Identities=43%  Similarity=0.664  Sum_probs=203.5

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcccc
Q 017603           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI  164 (369)
Q Consensus        85 k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~i  164 (369)
                      |+|++++||+++..+++++++|.+.++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i   80 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII   80 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence            46899999999999999999999776321111112222345466678889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHH
Q 017603          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA  244 (369)
Q Consensus       165 s~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a  244 (369)
                      |+++++.++.++..+++++++.++      ++....+++++.+.+++||.||+++||++++||+.+|++++..|+.++++
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988774      33336677778888999999999999999889999999888888877665


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 017603          245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTR  324 (369)
Q Consensus       245 ~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~~  324 (369)
                      +.+++++..++.+++.+++..++++.||++|+|+|+++|+||+|+++|+|++++++..++.+.++.++.+... ...+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~-~~~~~~  233 (283)
T TIGR01476       155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI-WGQPWV  233 (283)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHH
Confidence            6677888888888899999999999999999999999999999999999999998887666666555433322 112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603          325 DSRPLTSDIDQLRCFAEVLFTDDSRN  350 (369)
Q Consensus       325 ~~~~l~~~~~~l~~~~~~~~~~~~~~  350 (369)
                      .....++..|.++...+.++++.++.
T Consensus       234 ~~l~~ll~~p~~~~~~~~~~~~~~~~  259 (283)
T TIGR01476       234 ATIVFLLLVAQIYNQIKLFLRDPQQN  259 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHh
Confidence            22233333666777777666543333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=5.9e-38  Score=300.17  Aligned_cols=260  Identities=25%  Similarity=0.308  Sum_probs=209.7

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~  160 (369)
                      ++|+|+|++||+++..+++|+++|++.+.  .+++.      .++..++++.++++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~   75 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLK------GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIP   75 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchH------HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcC
Confidence            57999999999999999999999987763  22332      13344557778899999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (369)
Q Consensus       161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~  240 (369)
                      +|++|+++++.++.++.++++.+++.+       |+.++.+++++.++.++||.   ++||+++++|+++|..+|..++.
T Consensus        76 sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~  145 (279)
T PRK09573         76 SGRISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIF  145 (279)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888776       45577888888878899995   69999998999999999988888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017603          241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIR  320 (369)
Q Consensus       241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~  320 (369)
                      |+.+..+  ....++++...++|+.++++.||++|+|+|+++|+||+|+++|+|++.+++.....+..+.  +.+....+
T Consensus       146 g~~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~--~~~~~~~~  221 (279)
T PRK09573        146 GGLAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL--SPLPYFLG  221 (279)
T ss_pred             HHHHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            8876655  3455667778889999999999999999999999999999999999988876544333222  22222222


Q ss_pred             -hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhc
Q 017603          321 -ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKF  362 (369)
Q Consensus       321 -~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (369)
                       .+..| ...++++..+++..+++.++++++++++.++...+.+
T Consensus       222 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m  265 (279)
T PRK09573        222 IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIM  265 (279)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence             34556 5677778889999999999999988888766554433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=5.9e-37  Score=298.60  Aligned_cols=265  Identities=32%  Similarity=0.487  Sum_probs=199.9

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~  160 (369)
                      .++|+|+|++||++++ .++|+++|.+.+ +............+.++++.+.+..+++|++|||+|+|+|++|+|.||++
T Consensus        10 ~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~   88 (331)
T PRK12392         10 DKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIP   88 (331)
T ss_pred             HHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCC
Confidence            4689999999998888 777777776554 32111111111112333444555667889999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHH
Q 017603          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (369)
Q Consensus       161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~-~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~  239 (369)
                      +|++|+++++.++.++.++++++++++....+. ..+..+..++++.+++++||.||+++||+++.++..+|++++..++
T Consensus        89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~  168 (331)
T PRK12392         89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITF  168 (331)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999887654321 1122334456777889999999999999998889999999998888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 017603          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI  319 (369)
Q Consensus       240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l  319 (369)
                      +++.+..|++++..++++...++|+.++++.||++|+|+|++.|+||+|+++|++++.++......++.+..+. .....
T Consensus       169 ~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~-~~~~~  247 (331)
T PRK12392        169 LSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAW-LAWSW  247 (331)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHH-HHHHh
Confidence            78878889899888888888999999999999999999999999999999999999988876654344433322 22222


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603          320 RISTRDSRPLTSDIDQLRCFAEVLFTDDS  348 (369)
Q Consensus       320 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  348 (369)
                      +.+..+...+++..+.++.+.+..|+|..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~q~~l~r~p~~  276 (331)
T PRK12392        248 GFTVLMYFILVGLVLNIVIQIQLYRDPKG  276 (331)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence            23333333444446678888888888743

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-38  Score=298.33  Aligned_cols=268  Identities=22%  Similarity=0.167  Sum_probs=221.0

Q ss_pred             ccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCC
Q 017603           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR  157 (369)
Q Consensus        80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~R  157 (369)
                      .+.++|+|++++||+.+.+.+++.+.|++.+.......   . .++...+++.+..+++|++|+|+|+|+|++|+  ++|
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~---~-l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP---L-LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH---H-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            55689999999999999999999999998875321211   1 24555667778889999999999999999999  599


Q ss_pred             CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHHHhH
Q 017603          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (369)
Q Consensus       158 Pl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~  236 (369)
                      |+++|+++|+|++.++.++.++|..+++++.      |+....+++++++ ...+||.   ++||++++ |+++|...|.
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa  159 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA  159 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence            9999999999999999999999999886553      6777888877765 5899996   89999996 8999999999


Q ss_pred             HHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603          237 LPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL  315 (369)
Q Consensus       237 lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l  315 (369)
                      .|. +||.+++|++++..+++++++|+|+..+...-.++-+||++++|++++|++.|++.+++..... .+.. ..++++
T Consensus       160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y-~~~l-~~~sl~  237 (304)
T COG0109         160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLY-TLAL-APVSLL  237 (304)
T ss_pred             ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHH-HHHH-HHHHHH
Confidence            876 5778999999999999999999999888888888888999999999999999999998877653 3322 223333


Q ss_pred             hhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCCC
Q 017603          316 PTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLC  368 (369)
Q Consensus       316 ~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (369)
                      +...+ .+..| +...++++.+++..+++++++|++.+     +.||+||.+||+
T Consensus       238 ~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A-----~klF~~S~~yL~  287 (304)
T COG0109         238 LALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWA-----RKLFKYSIIYLA  287 (304)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHHHH
Confidence            33343 35567 78888899999999999999666554     456999999986

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2.6e-36  Score=288.74  Aligned_cols=261  Identities=21%  Similarity=0.221  Sum_probs=202.1

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP  158 (369)
                      ++|+|+|++||++..+..+++++|++.+++  +++.      .++..++++.++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   74 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP   74 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence            478999999999999999999999987632  3332      13345557778899999999999999999998  6999


Q ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhcccchHHH-HHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603          159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (369)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~~gl~l~~~-l~~~~~~~~~~~~-~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~  236 (369)
                      +|+|++|++|++.++.++.++|+.++++ +       |+... .+++...++.+.||.   ++||++++ |..+|...|.
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~  143 (279)
T PRK12869         75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN  143 (279)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence            9999999999999999999999998887 4       44433 334444567889994   79999985 7777777777


Q ss_pred             HHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603          237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL  315 (369)
Q Consensus       237 lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l  315 (369)
                      +|++ +|++++|++++..++++++.++|+.++.+.++++|+|||+++|+||+|+++|+|++.+++..+..+... + ..+
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~-~-~~~  221 (279)
T PRK12869        144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP-Y-ILL  221 (279)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH-H-HHH
Confidence            7665 556788999999999999999999999988999999999999999999999999998776654433222 1 111


Q ss_pred             hhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603          316 PTQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL  367 (369)
Q Consensus       316 ~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (369)
                      ......+..| ...++.+..+++.+.+++++++++.+     +.++|+|..|+
T Consensus       222 ~~~~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~f~~s~~~l  269 (279)
T PRK12869        222 LYLYYIGLIGLILVAILSAALMATSIRALLNPTKEEA-----WKMFKASSPYL  269 (279)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-----HHHHHHHHHHH
Confidence            2112245666 55556677889999999988876543     34456655443

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.9e-36  Score=292.65  Aligned_cols=269  Identities=20%  Similarity=0.134  Sum_probs=204.7

Q ss_pred             cccchHHHHHhhhCccchHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      ..++++|+|++++||+++..+.+++++|++.+  +.+++.      .++..++++.++++++|++|||+|+|+|++|+  
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~------~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt   81 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV------LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT   81 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence            33457899999999999999999999999776  333331      13334456777899999999999999999887  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS  233 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~  233 (369)
                      ++||+++|++|+++++.++.++..+|+.++..+.      |+....++.++.+ +.++||.   ++||++++++++.|..
T Consensus        82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~  152 (306)
T PRK13362         82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLS  152 (306)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHH
Confidence            5899999999999999999999999988765542      4445555545443 5779994   6999999877665544


Q ss_pred             HhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHH
Q 017603          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAA  313 (369)
Q Consensus       234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~  313 (369)
                      .+..|+.||.+++|++++..++++...++|+.++.+..+++|+|||+++|+||+|+++|+|++++....... .. ...+
T Consensus       153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~-~~-~~~s  230 (306)
T PRK13362        153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYIL-VF-ALVT  230 (306)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHH-HH-HHHH
Confidence            434345677888999999999999999999999999999999999999999999999999998876554322 21 1223


Q ss_pred             HHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603          314 SLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL  367 (369)
Q Consensus       314 ~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (369)
                      .+....+ .+..| ...+++++.+++..++++|++++++ +  +-+.||++|..||
T Consensus       231 ~l~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~-~--~a~~~f~~S~~yl  283 (306)
T PRK13362        231 ALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDT-V--WARQLFGFSILTI  283 (306)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCch-H--HHHHHHHHHHHHH
Confidence            3332233 35666 5667778889999999998753221 1  2367899998876

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.2e-36  Score=291.60  Aligned_cols=250  Identities=24%  Similarity=0.176  Sum_probs=195.1

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP  158 (369)
                      ++|+|+|++||+........+++|++.+  +.+++.      .++.+++++.++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP   74 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK------TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP   74 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence            4789999999999999988888898765  333432      13345557778899999999999999999995  7999


Q ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (369)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp  238 (369)
                      +++|++|+++++.++.++.++++.++..+       |+....++.++.++.+.|+    .+||++++++++.|..++..+
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~  143 (282)
T TIGR01475        75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP  143 (282)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence            99999999999999888777777776665       4445666777777788998    599999999999999888777


Q ss_pred             HHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh
Q 017603          239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP  316 (369)
Q Consensus       239 ~~~~~a~~g~~~--~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~  316 (369)
                      +++|.+++|+++  ...++++++.++|+.++++.|+++|+|+|+++|+||+|+++|+|++.+++..+..++.+..... .
T Consensus       144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~-~  222 (282)
T TIGR01475       144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLV-G  222 (282)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHH-H
Confidence            788888889888  7788899999999999999999999999999999999999999998887766554444332211 1


Q ss_pred             hhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhh
Q 017603          317 TQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNA  351 (369)
Q Consensus       317 ~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~  351 (369)
                      ...+.+..| ...++. ..+++...+..+.++++++
T Consensus       223 ~~~~~g~~y~~~~~~~-~~~l~~~~~~~~~~~~~~~  257 (282)
T TIGR01475       223 FYVGNGYIALLALILI-GLILAYEHYIVDPGDQSKI  257 (282)
T ss_pred             HHhhCcHHHHHHHHHH-HHHHHHHHHHcCCCCHHHH
Confidence            111235555 333333 4667777787776665543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=2.9e-36  Score=288.24  Aligned_cols=255  Identities=26%  Similarity=0.339  Sum_probs=197.9

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCc
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s  161 (369)
                      ++|+|+|++||+++..+.++.+.|++.+ +..+..    . ..+..++++.+.++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~----~-~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI----K-TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH----H-HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            5789999999999999999999998765 333211    1 123334456667889999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (369)
Q Consensus       162 G~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~  241 (369)
                      |++|+++++.++.++.++|+.+++.+       |+..+.+++++.+++++||.   ++|++++++|+.+|..+|..|+.+
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g  146 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG  146 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999998888877765       45567777777778999995   789998889999999999888777


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017603          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRI  321 (369)
Q Consensus       242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~  321 (369)
                      +.++ +++++..++. ...+++..++++.||++|+|+|+++|+||+|+++|+|+++++......+.  .+.+++......
T Consensus       147 ~~a~-~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~--~~~~~l~~~~~~  222 (277)
T PRK12883        147 AIAV-GRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLT--VIASFLPVKAGI  222 (277)
T ss_pred             HHHh-ccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHH--HHHHHHHHHHcc
Confidence            6654 7777765544 34677888899999999999999999999999999999988775543221  112222222223


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh
Q 017603          322 STRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQM  356 (369)
Q Consensus       322 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  356 (369)
                      +..|.+.+.++.++++...+++++++++++++.++
T Consensus       223 ~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  257 (277)
T PRK12883        223 GLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQK  257 (277)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence            44454556678889999999999988877766633

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.7e-36  Score=289.84  Aligned_cols=249  Identities=18%  Similarity=0.121  Sum_probs=196.3

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHhC-------CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-------~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~  154 (369)
                      .++|+|+|++||++....+...++|++.+.       .+++.      .++..++++.++++++|++|||+|+|+|++|+
T Consensus         6 ~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          6 KKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK------LLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            478999999999999999998888876542       22321      23344556677899999999999999999998


Q ss_pred             --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (369)
Q Consensus       155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~  232 (369)
                        ++||+++|++|++|++.++.++.++++.+++.+       |+....+++..+++..+||    .+||++.+++++.|.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~  148 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGL  148 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHH
Confidence              699999999999999999988887777776655       5556667766777788999    599999999999998


Q ss_pred             HHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH
Q 017603          233 SYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (369)
Q Consensus       233 ~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~  312 (369)
                      .++..|+.||.+++|+++...+++++..++|+.++++.++++|+|+|+++|+||+|+++|++++.++...+..++.+...
T Consensus       149 ~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~  228 (291)
T PRK12874        149 SLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWL  228 (291)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHH
Confidence            88877778888889999988888999999999999999999999999999999999999999988776554433322211


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603          313 ASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDS  348 (369)
Q Consensus       313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  348 (369)
                      . .......+.+|...+.++..+++...+..+++++
T Consensus       229 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  263 (291)
T PRK12874        229 L-FVWCAHLGLFAYLGVIVSALILLYEHYLVRKDFK  263 (291)
T ss_pred             H-HHHHhcchHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            1 1111122344455666777888888888876554

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-36  Score=286.96  Aligned_cols=258  Identities=26%  Similarity=0.328  Sum_probs=203.7

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~  160 (369)
                      +++++|+|++||+.+....+++++|++.++ ..++.      .++..++++.++++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLD------EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            579999999999999999999999987763 22221      13334557778899999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (369)
Q Consensus       161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~  240 (369)
                      +|++|+++++.++.++.+++++++..+       ++..+.+++++.++++.||.   ++||+++++|+.+|...+..+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~  145 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIF  145 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999888776       45567777778788999995   79999988999999887765556


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH-HHHhhhh
Q 017603          241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA-ASLPTQI  319 (369)
Q Consensus       241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~-~~l~~~l  319 (369)
                      ++.+..+ .+...++++...++|+.++++.+|++|+|+|+++|+||+|+++|+|++.+++.....+..+... .++... 
T Consensus       146 g~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (279)
T PRK12884        146 GGIAVGE-LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGI-  223 (279)
T ss_pred             HHHHhCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            6665444 4446778888889999999999999999999999999999999999999877665554443222 222221 


Q ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q 017603          320 RISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSL  358 (369)
Q Consensus       320 ~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  358 (369)
                       .+.+| ...+..+..+++...+..|++++++.++.+.++
T Consensus       224 -~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  262 (279)
T PRK12884        224 -FNILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKIT  262 (279)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence             24455 455566667788888999988888877774443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1.4e-35  Score=288.03  Aligned_cols=250  Identities=14%  Similarity=0.097  Sum_probs=203.8

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC----
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE----  154 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~----  154 (369)
                      ++|.|++++||++...+++|+++|.+.+    +.++|.      ..+..+++..++|+++|++|||+|++.|.+++    
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~   75 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG   75 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence            4789999999999999999999997654    345543      23445556677899999999999998666554    


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      ++|++++|.+|++++...+..+.+++++++.++....   ++..+.+++++.+.++.||.||+++||+++ ||+.++.++
T Consensus        76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~  151 (317)
T PRK13387         76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM  151 (317)
T ss_pred             CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence            6799999999999999999999999999998887654   566788899999999999999999999996 899999999


Q ss_pred             hHHHHHHH-HHHhcCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       235 g~lp~~~~-~a~~g~~~~~~~l--------------------l~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      |..++.+. +.+++.+++..++                    .+++.++...++++.||++|+|+|+++|+||+|+++|+
T Consensus       152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~  231 (317)
T PRK13387        152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR  231 (317)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence            98766554 6777877766554                    78899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603          294 ETAKWICVGAIDITQISVAASLP-TQIRISTRDSRPLTSDIDQLRCFAEVLFT  345 (369)
Q Consensus       294 ~~a~~~~~~~~~l~~l~~~~~l~-~~l~~~~~~~~~l~~~~~~l~~~~~~~~~  345 (369)
                      |++.+++..++.++++.++.... ..+|  .++ ...++.+|..++..+.+++
T Consensus       232 ~~a~~l~~~l~~~a~l~~~~~v~~g~lp--~~~-ll~ll~lP~~~~~~~~~~~  281 (317)
T PRK13387        232 EKGVVLFAILFYASYLAIAVIVLMGYIS--PWA-LLSFLTLRKPISNLQSFQK  281 (317)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhH--HHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999998888888766543322 2222  333 2334447888888887765

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.8e-36  Score=285.08  Aligned_cols=255  Identities=28%  Similarity=0.322  Sum_probs=198.4

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCc
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s  161 (369)
                      +++|+|+|++||+++..+++++++|++.+......   .. ..+.+++++.++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~~-~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---PS-LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CCHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---HH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            35899999999999999999999999876332111   11 133455577788999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (369)
Q Consensus       162 G~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~  241 (369)
                      |++|++|++.++.++.++|+++++.+       |+..+.+++++.++.++||.   ++||++++||+.+|...|..+.++
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g  147 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFG  147 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999888876       45567777777777889996   899999889999998888776666


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh-h
Q 017603          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI-R  320 (369)
Q Consensus       242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l-~  320 (369)
                      +.+.........+++++..++|..++++.||++|+|+|+++|+||+|+++|+|++.+++.....+..+.  ....... .
T Consensus       148 ~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~--~~~~~~~~~  225 (276)
T PRK12882        148 GAAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA--SPLPYLLST  225 (276)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            654332334455677888889999999999999999999999999999999999998876654433222  1111111 2


Q ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhh
Q 017603          321 ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAY  352 (369)
Q Consensus       321 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~  352 (369)
                      .+..| ...+..+..+++...+..++++++.++
T Consensus       226 ~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  258 (276)
T PRK12882        226 FGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQ  258 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            34555 566666677888888888887765443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=9e-36  Score=287.29  Aligned_cols=265  Identities=21%  Similarity=0.213  Sum_probs=202.8

Q ss_pred             cccchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      ..++++|+|+|++||+++....+++++|++.+.  .+++.      .++.+++++.++++++|++|||+|+|+|++|+  
T Consensus         5 ~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~------~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt   78 (296)
T PRK04375          5 SSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL------LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERT   78 (296)
T ss_pred             chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCcc
Confidence            556689999999999999999999999998763  23331      13345557778899999999999999999988  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS  233 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~  233 (369)
                      |+||+++|++|++|++.++.++.++|+++++++.      |+....+++++.+ +.++||.   ++||+++ +|..+|..
T Consensus        79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~  148 (296)
T PRK04375         79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGA  148 (296)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHH
Confidence            6999999999999999999999999998876542      3444555555543 4668994   6999997 67888877


Q ss_pred             HhHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH
Q 017603          234 YISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA  312 (369)
Q Consensus       234 ~g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~  312 (369)
                      .|.+|+ +||++++|++++..+++++..++|+.+++..++++|+|||+++|+||+|+++|+++++++......+. +. .
T Consensus       149 ~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~-~~-~  226 (296)
T PRK04375        149 AGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLL-VA-V  226 (296)
T ss_pred             HHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHH-HH-H
Confidence            776654 56678889999989999999999999999999999999999999999999999999887665543322 11 2


Q ss_pred             HHHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCC
Q 017603          313 ASLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDK  366 (369)
Q Consensus       313 ~~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (369)
                      .++....+ .+.+| ...+.++..+++...+..+++++++   .  +.+|++|..|
T Consensus       227 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~---~--~~~F~~s~~~  277 (296)
T PRK04375        227 SLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKW---A--RKLFRYSINY  277 (296)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHH---H--HHHHHHHHHH
Confidence            22222222 35666 4356677888888888998765443   3  3445555433

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2.6e-35  Score=283.69  Aligned_cols=252  Identities=18%  Similarity=0.205  Sum_probs=201.0

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHh---CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccc--cccccC--CC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAIN--EP  155 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~---g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~--~~D~~~--~~  155 (369)
                      ++|.|++++||+++..+++|+++|.+.+   +.+++.      .++..+++..++++++|.+|||+|+  +.|+++  ++
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~   75 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL------LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP   75 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence            5789999999999999999999998665   344442      1333445677789999999999999  567543  47


Q ss_pred             CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (369)
Q Consensus       156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g  235 (369)
                      +||+++|++|+++++.++.++.++++++++.+....   ++..+.+++++.++++.||.||.++|++++ ||+.+|+.+|
T Consensus        76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G  151 (293)
T PRK06080         76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG  151 (293)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence            999999999999999999999998888887765543   455677888888899999999999999987 8999999998


Q ss_pred             HHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603          236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS  314 (369)
Q Consensus       236 ~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~  314 (369)
                      .+.+.+ ++.++|.+++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++..+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~  231 (293)
T PRK06080        152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLL  231 (293)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHH
Confidence            776554 4677888999999999999999999999999999999999999999999999999999988888887665443


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603          315 LPTQIRISTRDSRPLTSDIDQLRCFAEVLFTD  346 (369)
Q Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~  346 (369)
                      ..... .+.++. ..++.+|...+..+.++++
T Consensus       232 ~~~~~-~~~~~l-l~ll~~p~~~~~~~~~~~~  261 (293)
T PRK06080        232 ALLGL-ASPWGL-LFLLSLPLAVKAARPVLRK  261 (293)
T ss_pred             HHHhh-hhHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            32211 233343 2333366666666655543

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-35  Score=283.75  Aligned_cols=247  Identities=23%  Similarity=0.139  Sum_probs=191.4

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCC
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR  157 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~R  157 (369)
                      +++|+|+|++||+.......++++|++.+.  .+++.      .++.++++..++++++|++|||+|+|+|++|+  ++|
T Consensus         6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            578999999999999999999999987752  23321      13344557778899999999999999999998  689


Q ss_pred             CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHH
Q 017603          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (369)
Q Consensus       158 Pl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~l  237 (369)
                      |+++|++|++|++.+...+.++++.+...+       |+.++.+++++.+..++||    .+||++.+++++.|.+.+..
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~~  148 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLALA  148 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHHH
Confidence            999999999999988655555544444444       5666777777777788999    58999999999988887766


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017603          238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT  317 (369)
Q Consensus       238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~  317 (369)
                      |+.+|++++|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|++++.++...+..+.....+  +..
T Consensus       149 ~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~--~~~  226 (291)
T PRK12886        149 PLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF--ALG  226 (291)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH--HHH
Confidence            777788889999999999999999999999999999999999999999999999999998877554433332221  111


Q ss_pred             hh-hhhhhH-HHHHHHHHHHHHHHHHHHhcCCc
Q 017603          318 QI-RISTRD-SRPLTSDIDQLRCFAEVLFTDDS  348 (369)
Q Consensus       318 ~l-~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~  348 (369)
                      .. +.+..| +..++.++.+++ ..+..+++|+
T Consensus       227 ~~~~~~~~y~~~~~~~~~~~l~-~~~~~~~~~~  258 (291)
T PRK12886        227 ISAGLGPWFLAGLAVTGILLLY-EHWLLRGGDL  258 (291)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence            11 234555 555566666664 6777776663

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.1e-35  Score=281.37  Aligned_cols=252  Identities=20%  Similarity=0.207  Sum_probs=193.1

Q ss_pred             cchHHHHHhhhCcc---chHHHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           81 TNKWKIRLQLTKPV---TWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        81 ~~~~k~yl~l~RP~---~~~l~~~~~l~G~~~~g~~~-~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      .+++++|+|++||+   ...++++|+++|.+.+.... ..   .. ..+.+++++.++++++|++|||+|+|+|++|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~~-~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---IS-LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---HH-HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            35799999988777   45578899999987652211 11   11 23445556778899999999999999999877  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      ++||+++|++|++|++.++.++.++++.+++.+       |+..+.+++++.++.+.||    ..||++.+++++.|.++
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~  148 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTF  148 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHH
Confidence            589999999999999999999999998887665       5567888888888899998    49999988999999888


Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603          235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS  314 (369)
Q Consensus       235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~  314 (369)
                      +..++.+|.+++|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|+|++.+++.......++..+. 
T Consensus       149 ~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-  227 (285)
T PRK12847        149 NMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-  227 (285)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence            8767778888899999999999999999999999999999999999999999999999999988877654443332221 


Q ss_pred             Hhhhhhh-hhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603          315 LPTQIRI-STRDSRPLTSDIDQLRCFAEVLFTDDSRN  350 (369)
Q Consensus       315 l~~~l~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~  350 (369)
                       ....+. +.+|....+ ....++......+.+++++
T Consensus       228 -~~~~~~~~~~y~~~~~-~~~~l~~~~~~~~~~~~~~  262 (285)
T PRK12847        228 -GIISSLHNIFYLAILA-AAGIFYYQYKLLDFDNPAN  262 (285)
T ss_pred             -HHHhcCcHHHHHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence             111222 344432222 2334555555666555443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.9e-35  Score=281.20  Aligned_cols=250  Identities=15%  Similarity=0.019  Sum_probs=191.8

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP  158 (369)
                      ++|+|+|++||++.+..+...++|++.+.+  +++.      .++..++++.++++++|++||++|+|+|++|+  |+||
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~------~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RP   75 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI------KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWA   75 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCC
Confidence            589999999999999999999999877632  3321      12334446677899999999999999999996  6999


Q ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (369)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp  238 (369)
                      +|+|++|++||+.+..++.++++.+.+.+       |+.++.++.....+...|+    .+||+++++|+++|+++|..|
T Consensus        76 LpsG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~  144 (286)
T PRK12895         76 LVSGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGV  144 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHH
Confidence            99999999999999999999998877766       5666777776666666776    699999999999999999777


Q ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh
Q 017603          239 WWAGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP  316 (369)
Q Consensus       239 ~~~~~a~~g~~~~--~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~  316 (369)
                      +++|.++.|++++  ..+++++..++|+.+++++++++|+|+|++.|+||+|+++|++++.++...+..++.....  ..
T Consensus       145 l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~--~~  222 (286)
T PRK12895        145 LAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFW--IS  222 (286)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHH--HH
Confidence            7888888888764  4567888899999999999999999999999999999999999988766544444332221  11


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 017603          317 TQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNA  351 (369)
Q Consensus       317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~  351 (369)
                      .....+.+|...+.+....+....+..+.+|+++.
T Consensus       223 g~~~~~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~  257 (286)
T PRK12895        223 GIYIRTLWYLAALIIIYTLVIYQHLIIDPRNPINK  257 (286)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            11112444533343334455555666666555443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=6.6e-35  Score=282.22  Aligned_cols=259  Identities=17%  Similarity=0.116  Sum_probs=191.3

Q ss_pred             cchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhh----hcccccccccccCC
Q 017603           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQT----INDWYDREIDAINE  154 (369)
Q Consensus        81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~----iNd~~D~~~D~~~~  154 (369)
                      .+.++.|+|++||++...+.++...+.+.+.  ..+......+...+    .+.+.+.++|+    +|||+|+|+|++|+
T Consensus        10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l----~~~~~~~~~nv~i~~iNd~~D~~iD~ink   85 (308)
T PRK12887         10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLL----GAWIACLCGNVYIVGLNQLTDIEIDRINK   85 (308)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence            3567999999999999999999887765431  11111000111122    33334555555    99999999999999


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      |+||+++|++|+++++....++.++|+++++.+       ++..+.+++++.++++.||.||+|+||+++++++.++...
T Consensus        86 p~rPiasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         86 PHLPLAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             CCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999988776       4556788888889999999999999999998888766565


Q ss_pred             hHHHHHHHH----H---HhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603          235 ISLPWWAGQ----A---LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (369)
Q Consensus       235 g~lp~~~~~----a---~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~  307 (369)
                      |..+.+|.+    .   ..+.+++..++++++.++|+.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.++
T Consensus       159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~  238 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC  238 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence            555444421    1   123567777888889999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHhhhh-hhhhhH-HHHHHHHHHHHHHHHHHHhcCCchh
Q 017603          308 QISVAASLPTQI-RISTRD-SRPLTSDIDQLRCFAEVLFTDDSRN  350 (369)
Q Consensus       308 ~l~~~~~l~~~l-~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~  350 (369)
                      |+..+....... +....+ .....+....++...+..+.+++++
T Consensus       239 y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (308)
T PRK12887        239 YLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQA  283 (308)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchH
Confidence            766544332222 223223 2333333445666666666665543

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.2e-35  Score=278.70  Aligned_cols=252  Identities=22%  Similarity=0.166  Sum_probs=191.1

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHH----h-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAA----S-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~----~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~  155 (369)
                      ++|+|+|++||++.+....-.+.|+..    + +.+++.      .++..+++..++++++|++|||+|+|+|++|+  +
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~   74 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA------DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA   74 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence            478999999999999866655555432    2 344432      13344557777899999999999999999998  6


Q ss_pred             CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (369)
Q Consensus       156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g  235 (369)
                      +||+|+|++|++|++.++.++.++++.++..+       |+.++.++.++.+..+.|+    ..||++++++++.|++++
T Consensus        75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~  143 (284)
T PRK12888         75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA  143 (284)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence            99999999999999998887777777776655       5556777777777778997    599999999999999888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL  315 (369)
Q Consensus       236 ~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l  315 (369)
                      ..|+++|++++|++++..++++++.++|+.++++.|+++|+|+|+++|+||+|+++|+|++.+++..+..++.+..... 
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~-  222 (284)
T PRK12888        144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF-  222 (284)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH-
Confidence            7788888888999999999999999999999999999999999999999999999999999876655544443322111 


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 017603          316 PTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAY  352 (369)
Q Consensus       316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~  352 (369)
                      ....+.+..|...+.+....+.+..+..+.+|+++..
T Consensus       223 ~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~  259 (284)
T PRK12888        223 GLAVGFGALWWIGLAITAGAFAYEHAIVSPTDLSRVN  259 (284)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHcCccCHHHHH
Confidence            1111234555333333444555566666666555433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-34  Score=278.69  Aligned_cols=221  Identities=19%  Similarity=0.156  Sum_probs=183.2

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC---
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---  154 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~---  154 (369)
                      .++|.|++++||+++..++.|+++|.+.+    ++++|..      .+.++++..++++++|++|||+|++.|.+++   
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~------~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt   75 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL------GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT   75 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence            37899999999999999999999997543    4556532      3445567778999999999999966555544   


Q ss_pred             --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (369)
Q Consensus       155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~  232 (369)
                        ++||+++|++|++|+...+.++..+++.++..+....   ++..+.+++++.+.++.||.||+++|++++ ||+.++.
T Consensus        76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~  151 (296)
T PRK05951         76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY  151 (296)
T ss_pred             CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence              6799999999999999999998888887776654332   455778888898999999999999999987 8999999


Q ss_pred             HHhHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603          233 SYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (369)
Q Consensus       233 ~~g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~  311 (369)
                      ++|.+.+++ ++.++|.+++..++.+++..+++.+..+.||++|+|+|+++|+||+|+++|+|++ +++...+.++++.+
T Consensus       152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~  230 (296)
T PRK05951        152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL  230 (296)
T ss_pred             HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence            999766554 4678899999999999999999999999999999999999999999999999999 55555556666554


Q ss_pred             HH
Q 017603          312 AA  313 (369)
Q Consensus       312 ~~  313 (369)
                      +.
T Consensus       231 ~~  232 (296)
T PRK05951        231 QI  232 (296)
T ss_pred             HH
Confidence            43

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-34  Score=277.38  Aligned_cols=253  Identities=19%  Similarity=0.197  Sum_probs=192.6

Q ss_pred             chHHHHHhhhC---ccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        82 ~~~k~yl~l~R---P~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      +++|+|+|++|   |+...+.++|+++|...+.  .+++.      .++.++++..++++++|++|||+|+|+|++|+  
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            47899999996   6677888899999987652  23321      12334446667899999999999999999887  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      |+||+++|++|++|++.++.++..+++++++.+       |+..+.+++++.+..++|+    ..||++.+++++.|+.+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~  145 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAF  145 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHH
Confidence            589999999999999999999999998877666       5556777877877888996    48999988999989888


Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603          235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS  314 (369)
Q Consensus       235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~  314 (369)
                      |..+.++|.+++|++++.++++++..++|+..+++.++++|+|+|+++|+||+|+++|+|++.++.... .+.... .+.
T Consensus       146 g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~-~~~~~~-~~~  223 (282)
T PRK12848        146 GWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQ-LATLAL-LAW  223 (282)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHH-HHHHHH-HHH
Confidence            876677888889999999999999999999999999999999999999999999999999988766443 222211 122


Q ss_pred             HhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 017603          315 LPTQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNG  354 (369)
Q Consensus       315 l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  354 (369)
                      .....+.+.+| ...+..++.+++. .+..++++++++.+.
T Consensus       224 ~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  263 (282)
T PRK12848        224 AGWLLGLGWAYYWGLLVAAALFVYQ-QKLIRDREREACFKA  263 (282)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHH
Confidence            22112334555 4444444444444 456666665554443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=5.9e-35  Score=279.67  Aligned_cols=258  Identities=22%  Similarity=0.229  Sum_probs=191.4

Q ss_pred             HHhhhCccchHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccc
Q 017603           87 RLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGA  163 (369)
Q Consensus        87 yl~l~RP~~~~l~~~~~l~G~~~~g~~-~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~  163 (369)
                      ..++.||+.+.+.++|+++|+..+... ...  +.. .++.++++..++++++|++|||+|+|+|++|+  |+||+++|+
T Consensus         7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~~-~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~   83 (281)
T TIGR01474         7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PLY-LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA   83 (281)
T ss_pred             HHccccHHHHHHHHHHHHHHHHHHhcccCCC--cHH-HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence            344557999999999999998765321 111  111 13334456667899999999999999999887  589999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHH
Q 017603          164 ISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ  243 (369)
Q Consensus       164 is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~  243 (369)
                      +|++|++.++.++.++|+.+++.+       |+....+++++.++.+.||    .+||++.+++++.|+.++..|+.+|+
T Consensus        84 is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~~  152 (281)
T TIGR01474        84 VSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGWA  152 (281)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887765       5667788888888899998    59999999999999888777778888


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017603          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRIST  323 (369)
Q Consensus       244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~  323 (369)
                      +++|++++..+++++..++|+.++++.++++|+|+|+++|+||+|+++|+|++.+..........+..+.  ....+.+.
T Consensus       153 a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  230 (281)
T TIGR01474       153 AVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALA--GLIAGLGP  230 (281)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHH--HHHhCCcH
Confidence            8899999888888889999999999999999999999999999999999988766554432222221111  11112344


Q ss_pred             hH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCC
Q 017603          324 RD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDK  366 (369)
Q Consensus       324 ~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (369)
                      .| ....+.+..+++... ..+++|+++   .  +.+||.|..+
T Consensus       231 ~y~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~F~~~~~~  268 (281)
T TIGR01474       231 VYYLGLAAAALLLIRQIA-TLDIRDPEN---C--LKLFKANNYV  268 (281)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCCHHH---H--HHHHHHhhHH
Confidence            45 444455555555555 445555443   2  3456666544

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7.8e-35  Score=282.45  Aligned_cols=211  Identities=23%  Similarity=0.290  Sum_probs=177.7

Q ss_pred             chHHHHHhhh---CccchHHHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           82 NKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNFH--WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        82 ~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~g~~~--~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      .++++|+|++   ||++..+.++|+++|.+++....  +...+.. .++..++++.++++++|++|||+|+|+|++|+  
T Consensus        28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~-~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt  106 (314)
T PRK12878         28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW-HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVART  106 (314)
T ss_pred             hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence            5899999999   99999999999999987653210  0001112 23344557778999999999999999999887  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      ++||+++|++|++|++.++.++.++|+.+.+.+       |+..+.++++++++.+.||    .+||++.++++..|+.+
T Consensus       107 ~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~Gl~~  175 (314)
T PRK12878        107 RSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFFLGLAF  175 (314)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHHHHHH
Confidence            589999999999999999988888888887665       4557888888888899998    59999998888888887


Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHH
Q 017603          235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI  304 (369)
Q Consensus       235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~  304 (369)
                      +..|+.+|++++|++++..+++++..++|+..++..++++|+|+|+++|+||+|+++|++++.+++....
T Consensus       176 ~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~  245 (314)
T PRK12878        176 SWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG  245 (314)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH
Confidence            7667778889999999988999999999999999999999999999999999999999999988775443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.2e-34  Score=277.52  Aligned_cols=261  Identities=19%  Similarity=0.123  Sum_probs=198.5

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHHhCC---CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCC
Q 017603           85 KIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI  159 (369)
Q Consensus        85 k~yl~l~RP~~~~l~~~~~l~G~~~~g~---~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl  159 (369)
                      |+|+|++||+++....+++++|++.++.   +++.      .++.+++++.++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl   74 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPP------LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPL   74 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCC
Confidence            4799999999999999999999987643   2321      23445557778899999999999999999987  69999


Q ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (369)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp  238 (369)
                      ++|++|++++..++.++.++|+.++....      |+....+++++.++ .++||.   ++||++++ +..+|...|.+|
T Consensus        75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~  144 (280)
T TIGR01473        75 VTGRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVP  144 (280)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHH
Confidence            99999999999999999988888554421      55566777777654 889995   69999986 566676777776


Q ss_pred             HH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017603          239 WW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT  317 (369)
Q Consensus       239 ~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~  317 (369)
                      ++ +|++++|++++..+++++..++|+..+.....++|+|||+++|+||+|+++|+|++.++......+.  ....++..
T Consensus       145 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~--~~~~~~~~  222 (280)
T TIGR01473       145 PLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAAL--LPVSLLLA  222 (280)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            54 5577789999999999999999999888888899999999999999999999999887665443222  11222222


Q ss_pred             hhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603          318 QIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL  367 (369)
Q Consensus       318 ~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (369)
                      ..+ .+..| ...++++..+++...++.++++++  ++.  +.++++|..|+
T Consensus       223 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~--~~~--~~~f~~s~~~~  270 (280)
T TIGR01473       223 FLGGTGWLYLIVATLLGALFLYLAFKFYRDPTDR--KKA--RKLFKFSLIYL  270 (280)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHH--HHHHHHHHHHH
Confidence            222 35566 456677778888888888876321  123  55667666554

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.4e-34  Score=276.40  Aligned_cols=204  Identities=23%  Similarity=0.246  Sum_probs=173.4

Q ss_pred             chHHHHHhhhCccc---hHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603           82 NKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        82 ~~~k~yl~l~RP~~---~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      +++++|+|++||+.   ..+.++|+++|+..+  +.+++.      .++.++++..++++++|++|||+|+|+|++|+  
T Consensus         7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~------~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt   80 (290)
T PRK12870          7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP------LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT   80 (290)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence            57899999986555   667778999998765  333332      13344456677899999999999999999877  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      ++||+++|++|++|+..++.++.++++.+++.+       |+.++.+++.+.++.++||    ..||++.+++++.|.++
T Consensus        81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~  149 (290)
T PRK12870         81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAW  149 (290)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHH
Confidence            489999999999999999999999999888776       5667778888888888998    48999999999999988


Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603          235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (369)
Q Consensus       235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~  302 (369)
                      +..++.+|.+++|++++..+++++..++|+.++++.++++|+|+|+++|+||+|+++|++++.++...
T Consensus       150 ~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~  217 (290)
T PRK12870        150 GFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF  217 (290)
T ss_pred             HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH
Confidence            87677788889999999999999999999999999999999999999999999999999998876653

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1e-33  Score=272.89  Aligned_cols=253  Identities=17%  Similarity=0.165  Sum_probs=203.5

Q ss_pred             cccchHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--cccc
Q 017603           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (369)
Q Consensus        79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~  152 (369)
                      +..++++.|++.+||+++..+++|+++|.+.+    +.++|..      .+.+++++.++|+++|.+|||+|++  .|+.
T Consensus         7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~------~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~   80 (304)
T PRK07419          7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ------FITFLLAAILILAWENLSNDVFDADTGIDKN   80 (304)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            44567999999999999999999999997654    3456532      3345557778999999999999987  6773


Q ss_pred             CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603          153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (369)
Q Consensus       153 ~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~  232 (369)
                       ++ ....++..+++++...+.++++++++++.++....   ++..+.+++++.+.+++||.||+++||+++ ||+.+++
T Consensus        81 -~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l  154 (304)
T PRK07419         81 -KF-HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFL  154 (304)
T ss_pred             -cc-cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHH
Confidence             22 23445556899999999999999999998876554   566788899999999999999999999997 8999999


Q ss_pred             HHhHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603          233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (369)
Q Consensus       233 ~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~  311 (369)
                      ++|.+++.+. +.++|++++..++.+++..+.+.++++.||++|+|+|+++|++|+++++|+|++++++..++..+++.+
T Consensus       155 ~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~  234 (304)
T PRK07419        155 AFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALE  234 (304)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHH
Confidence            9998877654 688999999999999999999999999999999999999999999999999999999988888887766


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603          312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFT  345 (369)
Q Consensus       312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~  345 (369)
                      +......  ...++....++.+|..++..+.+++
T Consensus       235 i~~v~~g--~~p~~~Ll~ll~lPl~~~~~~~~~~  266 (304)
T PRK07419        235 LLPVLLG--FWPWTTLLSLLSLPFAIKLIRLVRE  266 (304)
T ss_pred             HHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433322  1122323344447777777777755

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=7.1e-34  Score=270.38  Aligned_cols=261  Identities=16%  Similarity=0.117  Sum_probs=193.7

Q ss_pred             ccchHHHHHhhhCccchHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Q 017603           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP  158 (369)
Q Consensus        80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RP  158 (369)
                      ....++.+++++||.+|+....++++|+..+|. ++|....   ..+.++ .....+.+.|.+|||+|+|+|++|+|+||
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~~---~~l~~~-~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPGV---LPLLLY-LTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhHH---HHHHHH-HHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            345688999999999999999999999988763 5652111   122223 22346779999999999999999999999


Q ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (369)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp  238 (369)
                      +++|++|+++++.+...+...++.++..+....   ++..+.+.+++.++.+.||.||+|+|++++++++.. ..+| +|
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p  158 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-LP  158 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-HH
Confidence            999999999999876666655544443333322   566677777888899999999999999999988876 3444 47


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 017603          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQ  318 (369)
Q Consensus       239 ~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~  318 (369)
                      +..+.++.|+......+  +..++|..+.+.+++++|+|+|++.|+||+|+++|+|++.+++..++.++...     +..
T Consensus       159 ~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~-----~~~  231 (292)
T PRK13595        159 LALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL-----LWP  231 (292)
T ss_pred             HHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH-----HHH
Confidence            66666677765443333  34578889999999999999999999999999999999999887765443221     222


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhh
Q 017603          319 IRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMH  360 (369)
Q Consensus       319 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  360 (369)
                      .+...+.+    +.++......++.++++.|+++|+|+.++.
T Consensus       232 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (292)
T PRK13595        232 VSRLTALA----LWLICGGMALALWRRPTPETAHRLYPLSIV  269 (292)
T ss_pred             hcchHHHH----HHHHHHHHHHHHhcCCCHHHHhccchHHHH
Confidence            22222111    334555566677799999999999998653

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.8e-33  Score=265.01  Aligned_cols=271  Identities=17%  Similarity=0.187  Sum_probs=214.6

Q ss_pred             cchHHHHHhhhCccchHHHHHHHHHHHHHh---C-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--cccc--
Q 017603           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI--  152 (369)
Q Consensus        81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~---g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~--  152 (369)
                      .++.+.|++++||+++..++.|+++|.+.+   + .++|     +. .+.++++..+++.++|..|||.|++  .|.+  
T Consensus         5 ~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~-~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~   78 (303)
T COG1575           5 TSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LV-ALLALIAAILLQILVNLANDYFDYKKGTDTHGP   78 (303)
T ss_pred             cHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC
Confidence            346689999999999999999999997544   2 3444     22 3445557778999999999999986  5642  


Q ss_pred             --CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHH
Q 017603          153 --NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL  230 (369)
Q Consensus       153 --~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~v  230 (369)
                        .+.++-+...+++++..+...+.+...+.+++..+....   +|..+.+|+++++.++.||.||+|++|.|+ ||+.+
T Consensus        79 ~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~  154 (303)
T COG1575          79 DRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFV  154 (303)
T ss_pred             ccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHH
Confidence              224667777788888888888888877777777665443   566788999999999999999999999997 89999


Q ss_pred             HHHHhHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHH
Q 017603          231 GASYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (369)
Q Consensus       231 g~~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l  309 (369)
                      |.++|.+.+. +++.+++++++..++.+++.++.+.+++..||++|+|+|+|+|++|+||++|++.++.++..++..+++
T Consensus       155 ~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l  234 (303)
T COG1575         155 GVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYL  234 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHH
Confidence            9999988665 457889999999999999999999999999999999999999999999999999999999888888877


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcC
Q 017603          310 SVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFS  363 (369)
Q Consensus       310 ~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (369)
                      ..+....... ..+++ ...++.+|...+..|.+++.+.+...+.+++.|.+++
T Consensus       235 ~~~~~~i~~~-~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~  286 (303)
T COG1575         235 AIVIFVILGL-FPVWG-LLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKAN  286 (303)
T ss_pred             HHHHHHHHHh-chHHH-HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence            6654333221 23333 2333347788888888777665667777777777664

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-33  Score=272.32  Aligned_cols=210  Identities=20%  Similarity=0.121  Sum_probs=170.0

Q ss_pred             ccchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (369)
Q Consensus        80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~  155 (369)
                      .++++|+|+|++||+.....+.++.+|++.+.  .+++.      .++.++++..++++++|++|||+|+|+|++|+  +
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence            34579999999999999999999999987763  33332      13344557777899999999999999999996  6


Q ss_pred             CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (369)
Q Consensus       156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g  235 (369)
                      +||+|+|++|++|++.+..++.+.++.+++.+       |+.+..++.++.++.+.||    .+||+++++|+++|.+++
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~  153 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQG  153 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHH
Confidence            99999999999999998766666666665555       5556777777776777898    599999999999999999


Q ss_pred             HHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603          236 SLPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (369)
Q Consensus       236 ~lp~~~~~a~~g~~--------~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~  307 (369)
                      ..++.|+.++.|..        +..++++.+..++|+.++++.|+++|+|+|+++|+||+|+++| +++.++...+..++
T Consensus       154 ~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~  232 (300)
T PRK13106        154 LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFS  232 (300)
T ss_pred             HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHH
Confidence            88888888777743        2344666667889999999999999999999999999999999 87877766554443

>PLN02922 prenyltransferase

Probab=100.00  E-value=7.6e-33  Score=268.26  Aligned_cols=255  Identities=20%  Similarity=0.204  Sum_probs=191.4

Q ss_pred             ccccchHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--ccc
Q 017603           78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDA  151 (369)
Q Consensus        78 ~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~  151 (369)
                      +++.+++|.|++.+||+++..+++|+++|.+.+    +.++|..      .+.++++..++|.++|.+|||+|++  .|+
T Consensus         9 ~~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~------~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~   82 (315)
T PLN02922          9 GEELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR------YGTLLLSSVLVITWLNLSNDAYDADTGVDK   82 (315)
T ss_pred             CCCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH------HHHHHHHHHHHHHHHHHHhhhhHhccCcCc
Confidence            366778999999999999999999999997654    4566542      3345557778999999999999986  576


Q ss_pred             cCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603          152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (369)
Q Consensus       152 ~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg  231 (369)
                      .++..+.-..|  |++++...+..+.+++++ +..+..... .++..+.+++++++.++.||.||+++||+++ ||+.++
T Consensus        83 ~~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~~-~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~  157 (315)
T PLN02922         83 NKKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLVA-GNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCF  157 (315)
T ss_pred             ccCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHHc-cChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHH
Confidence            43322112233  999999988888888874 443321210 1466788899999999999999999999998 899999


Q ss_pred             HHHhHHHHHHH-HHHhc----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHH
Q 017603          232 ASYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC  300 (369)
Q Consensus       232 ~~~g~lp~~~~-~a~~g----------~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~  300 (369)
                      ..+|.+++.+. +.++|          .+++..++.+++..+++.++++.||++|+|+|+++|++|+++++|+|++++++
T Consensus       158 i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~  237 (315)
T PLN02922        158 AAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHH
Confidence            99998877654 46666          35677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 017603          301 VGAIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLRCFAEVLFT  345 (369)
Q Consensus       301 ~~~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~  345 (369)
                      ..++.++|+.++......  ...++ ....++.+|......+.+++
T Consensus       238 ~~l~~~~y~~~i~~v~~~--~~p~~~~l~~ll~lpl~~~~~~~~~~  281 (315)
T PLN02922        238 RWAVLLLYSLLAALGLLK--ALPLPCALLCFLTLPLGKLVVDFVEK  281 (315)
T ss_pred             HHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888876664433321  11222 22233335544555555554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=4.9e-33  Score=266.23  Aligned_cols=242  Identities=18%  Similarity=0.164  Sum_probs=194.6

Q ss_pred             CccchHHHHHHHHHHHHHh---CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--ccccC--CCCCCCCcccc
Q 017603           92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI  164 (369)
Q Consensus        92 RP~~~~l~~~~~l~G~~~~---g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~~--~~~RPl~sG~i  164 (369)
                      ||+++..++.|+++|.+.+   +.++|..      .+..+++..++|+++|.+|||+|++  .|+.+  .++|++++|.+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~~------~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i   74 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLHAFVWLV------ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI   74 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCccHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence            8999999999999997654   3455432      3344557778999999999999985  46533  37899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccch------HHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFP------TIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (369)
Q Consensus       165 s~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~------~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp  238 (369)
                      |++++...+.++++++++++.++....   ++      ....+++++++.++.||.||+++|++++ ||+.+++++|.++
T Consensus        75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~---~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~  150 (284)
T TIGR00751        75 TPREVKTALITSVALGALSGLVLALLA---APNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLA  150 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHH
Confidence            999999999999999999988876554   23      3567888888899999999999999997 8999999999887


Q ss_pred             HHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh-
Q 017603          239 WWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP-  316 (369)
Q Consensus       239 ~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~-  316 (369)
                      +.+ ++.++|++++..++.+++..+++.++++.||++|+|+|+++|++|+++++|+|++++++..++..+++.++.... 
T Consensus       151 v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~  230 (284)
T TIGR00751       151 VLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA  230 (284)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            665 468899999999999999999999999999999999999999999999999999999998888777765533222 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603          317 TQIRISTRDSRPLTSDIDQLRCFAEVLFTD  346 (369)
Q Consensus       317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~  346 (369)
                      ..+|  . +....++.+|...+..+.++++
T Consensus       231 ~~~p--~-~~ll~ll~lPl~~~~~~~~~~~  257 (284)
T TIGR00751       231 TPIS--W-WCVLFLLAAPLLLKAAGPVRSG  257 (284)
T ss_pred             hhch--H-HHHHHHHHHHHHHHHHHHHHhc
Confidence            2222  2 2223344477777777777653

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-33  Score=265.88  Aligned_cols=250  Identities=20%  Similarity=0.122  Sum_probs=187.9

Q ss_pred             cchHHHHHhh---hCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC-
Q 017603           81 TNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (369)
Q Consensus        81 ~~~~k~yl~l---~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-  154 (369)
                      .+++++|+|+   .||+...++++|+++|++.+..  +++.      .++.+++++.++.+++|++||+.|+|+|++|+ 
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~------~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   77 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLL------LLLLIILGGLAVSGAGCIANDLWDRRIDRKVER   77 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            3479999999   6788888999999999876532  2321      23445567778899999999999999999998 


Q ss_pred             -CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHH
Q 017603          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (369)
Q Consensus       155 -~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~  233 (369)
                       ++||+++|++|+++|+.++.++.++++.+++.++...   |+.++.++++++++..+||    .+||++.+++++.|++
T Consensus        78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~---n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~  150 (294)
T PRK12873         78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS---RNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHH
Confidence             5999999999999999999999999988877663211   5667788888888888999    5999999999998888


Q ss_pred             HhHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603          234 YISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (369)
Q Consensus       234 ~g~lp~~~~~a~~g~~~~~--~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~  311 (369)
                      .+..|++||.+++|++++.  .+++++..++|+.+++++++++|+|||+++|+||+|+++|++..++... ++.++.+.+
T Consensus       151 ~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~-~~~~~~~ll  229 (294)
T PRK12873        151 WGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQI-CYFLTSIFL  229 (294)
T ss_pred             HHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHH-HHHHHHHHH
Confidence            8776778888999998863  3445578899999999999999999999999999999999865554333 333332211


Q ss_pred             --HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 017603          312 --AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDD  347 (369)
Q Consensus       312 --~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~  347 (369)
                        .++.   .+.+..|...+......+....+..+.++
T Consensus       230 ~~~g~~---~~l~~~y~~~~~~~~~~l~~~~~~~~~~~  264 (294)
T PRK12873        230 ALAAFI---AQVGFIFWPFWLIASIGMQRDILKLFPEK  264 (294)
T ss_pred             HHHHHH---hCCcHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence              2221   22344453333333344555566666554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=5.5e-33  Score=266.50  Aligned_cols=250  Identities=22%  Similarity=0.213  Sum_probs=188.4

Q ss_pred             chHHHHHhhh---CccchHHHHHHHHHHHHHh---CC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Q 017603           82 NKWKIRLQLT---KPVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (369)
Q Consensus        82 ~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~---g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~  154 (369)
                      +++++|+|++   ||..+.+..+|+++|...+   +. +++.      .++.++++..++++++|++||++|+|+|++|+
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            4688888877   5888899999999987654   22 2321      23345556677899999999999999999987


Q ss_pred             --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (369)
Q Consensus       155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~  232 (369)
                        |+||+++|++|++|++.+..++.++++++++.+       |+.++.+++++.++.++||    .+||++++++++.|+
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~  146 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGL  146 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHH
Confidence              599999999999999999999999999888776       4556778888888888998    599999999999998


Q ss_pred             HHhHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603          233 SYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (369)
Q Consensus       233 ~~g~lp~~~~~a~~g~~~~~~~l-l~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~  311 (369)
                      +++..|+++|.+++|++++..++ +.+..++|+.++++.++++|+|+|+++|+||+|+++|+++..++.. +..+++..+
T Consensus       147 ~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l  225 (289)
T PLN02809        147 TFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGL  225 (289)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHH
Confidence            88877888888889988876664 7777889999999999999999999999999999999997666654 333333222


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603          312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRN  350 (369)
Q Consensus       312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~  350 (369)
                      .. .....+.+..|...+......+....+..+.+|+++
T Consensus       226 ~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~  263 (289)
T PLN02809        226 AL-SGYNAGLGWPYYAGLAAAAGHLAWQIQTVDLSSRAD  263 (289)
T ss_pred             HH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            11 111113344442233333334555555665555554

>PLN02776 prenyltransferase

Probab=100.00  E-value=6.8e-33  Score=269.12  Aligned_cols=253  Identities=19%  Similarity=0.104  Sum_probs=197.9

Q ss_pred             hhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccccC
Q 017603           90 LTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS  165 (369)
Q Consensus        90 l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is  165 (369)
                      ++||+...+++++.+.|++.+.  .+++.      .++.+.+++.++++++|++||++|+|+|++|+  ++||+|+|++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            5899999999999999998763  23332      23445557777899999999999999999988  59999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHHhHHH-HHHHH
Q 017603          166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP-WWAGQ  243 (369)
Q Consensus       166 ~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp-~~~~~  243 (369)
                      +++|+.++.++.++|+.+.....      |+.++.++++++++ ...||    .+||++++ |.++|+..|.+| ++||.
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~  143 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence            99999999999888886554321      66677777776554 67999    59999987 789999999765 56788


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe--ChhhHHHHHHHHHHHHHHHHHHHHhhhhh-
Q 017603          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICVGAIDITQISVAASLPTQIR-  320 (369)
Q Consensus       244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~--G~~~a~~~~~~~~~l~~l~~~~~l~~~l~-  320 (369)
                      +++|++++..+++++..++|+..+.+...+.|+|||+++|+||+|+..  |+++++.+......+..+   ++++..++ 
T Consensus       144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~---~ll~~~~g~  220 (341)
T PLN02776        144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPL---GFLAYDWGV  220 (341)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence            899999999999999999999998889999999999999999999987  355555555443333222   22222222 


Q ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603          321 ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL  367 (369)
Q Consensus       321 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (369)
                      .+.+| +..+.+++.+++...++.+++|++     +-+.||++|..||
T Consensus       221 ~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~-----~ar~~F~~Sl~yL  263 (341)
T PLN02776        221 TSSPFALEAALLTAYLAASAASFYREPTNA-----NARKMFHGSLLYL  263 (341)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHH
Confidence            23444 677888888999999999876533     3377899998886

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=2.9e-32  Score=261.06  Aligned_cols=245  Identities=20%  Similarity=0.190  Sum_probs=194.9

Q ss_pred             HHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc--cccCCCCCCCC
Q 017603           87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI--DAINEPYRPIP  160 (369)
Q Consensus        87 yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~--D~~~~~~RPl~  160 (369)
                      |++.+||+++..++.|+++|.+.+    +.++|..      .+.++++..++|.++|.+|||+|++.  |+.+.  ....
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~------~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~   73 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR------FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIV   73 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcc
Confidence            788999999999999999997654    4566542      33344577789999999999999864  76432  1222


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (369)
Q Consensus       161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~  240 (369)
                      ++..+++++...+.++..++++++..+....   ++..+.+++++.+.++.||.||+++||+++ ||+.+++.+|.+++.
T Consensus        74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~  149 (285)
T TIGR02235        74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA  149 (285)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence            3335688888888889999999888876654   466788888999999999999999999998 899999999988765


Q ss_pred             H-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 017603          241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI  319 (369)
Q Consensus       241 ~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l  319 (369)
                      + ++.++|++++..++.+++..+.+.++++.||++|+|+|+++|+||+++++|+|++.+++..++.++|+.++...... 
T Consensus       150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~-  228 (285)
T TIGR02235       150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG-  228 (285)
T ss_pred             HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            5 46889999999999999999999999999999999999999999999999999999999988888887664433322 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603          320 RISTRDSRPLTSDIDQLRCFAEVLFT  345 (369)
Q Consensus       320 ~~~~~~~~~l~~~~~~l~~~~~~~~~  345 (369)
                       ...++....++.+|..++..+.+++
T Consensus       229 -~~p~~~ll~ll~lPl~~~~~~~~~~  253 (285)
T TIGR02235       229 -FLPWTTLLALASIPWAVKLIRLVRQ  253 (285)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1223323344447777777777765

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=2.9e-32  Score=262.10  Aligned_cols=206  Identities=30%  Similarity=0.373  Sum_probs=180.1

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCC--CCCC
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRPI  159 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~--~RPl  159 (369)
                      .++.++++.||..+.+..++..+|...+. ....     ....+..++++.++++++|++||+.|+|+|++|+|  +||+
T Consensus        12 ~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl   86 (289)
T COG0382          12 ALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL   86 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence            46777888899999999999999987764 2221     12344555677778999999999999999999997  9999


Q ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHH
Q 017603          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (369)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~  239 (369)
                      ++|++|+++++.+..++.++++++++.+       |+..+.+.+.+.++.+.|.    ++||.++++++.+|.+++..+.
T Consensus        87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~~  155 (289)
T COG0382          87 PSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGAL  155 (289)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888       5556788888888999993    6999999999999999998888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHH
Q 017603          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI  304 (369)
Q Consensus       240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~  304 (369)
                      +|+.++.|+.....+++.+..++|+.+++..++++|+|+|+++|+||+|+.+|++++.++.....
T Consensus       156 ~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~  220 (289)
T COG0382         156 AGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL  220 (289)
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH
Confidence            88888888888888999999999999999999999999999999999999999999998887655

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-31  Score=256.46  Aligned_cols=257  Identities=17%  Similarity=0.180  Sum_probs=183.6

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccC----
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN----  153 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~----  153 (369)
                      +++|+|++++||+.+.....++.+|.+.+    |.+++.      .++.+++++.++..++|++|||+|+|.|++|    
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~------~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rt   76 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE------LTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENT   76 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence            46899999999998888888888887553    444442      1222334555666778999999999999864    


Q ss_pred             -----C--CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCccccc---
Q 017603          154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG---  223 (369)
Q Consensus       154 -----~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~---  223 (369)
                           +  ++||+++|++|+++++.++.++.++|++++..+....   .+..+.+++.+.++++.|+     +|++.   
T Consensus        77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~-----~~kr~~~~  148 (297)
T PRK12871         77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQ-----VKKRNQKY  148 (297)
T ss_pred             hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----cccccccc
Confidence                 2  5899999999999999999999999998887765332   2334566667777788888     33332   


Q ss_pred             chhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHH
Q 017603          224 WIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA  303 (369)
Q Consensus       224 ~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~  303 (369)
                      +.+.+.-+..++. +.+.+++++|+++...+++++..++|+.+++..||++|+|||+++|+||+|+++|+++++++...+
T Consensus       149 p~~~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~  227 (297)
T PRK12871        149 PVAQLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGF  227 (297)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHH
Confidence            2223222234444 444445678999998899999999999999999999999999999999999999999888766554


Q ss_pred             HHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh
Q 017603          304 IDITQISVAASLPTQIRISTR-DSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQM  356 (369)
Q Consensus       304 ~~l~~l~~~~~l~~~l~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  356 (369)
                      ..+..+..+++..   ..+.. +...+....+.++.+.+..|.++++.+-+.-+
T Consensus       228 ~~l~~l~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  278 (297)
T PRK12871        228 TALHFLAAIFFLR---ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP  278 (297)
T ss_pred             HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4444333332222   22322 33333444667888888899988877655533

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-31  Score=256.84  Aligned_cols=212  Identities=23%  Similarity=0.164  Sum_probs=168.3

Q ss_pred             chHHHHHhhhCccchHHHHHHHHHHHHHhC-------C-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017603           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (369)
Q Consensus        82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-------~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~  153 (369)
                      +++|.|.|+.|-++.+..+--...|+..+.       . +++..  + ..++.+.++.+++++++|++||++|+|+|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~--~-~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG--I-KTISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC--H-HHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            468999999999998887776777765442       1 11211  1 12344555667789999999999999999999


Q ss_pred             C--CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (369)
Q Consensus       154 ~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg  231 (369)
                      +  ++||+|+|++|++|++.++..+.++++.+...+       |+.++.++.+++++.++||    .+||++++++++.|
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG  147 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG  147 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence            9  599999999999999999876666666666666       6777888888888888998    59999999999999


Q ss_pred             HHHhHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHH
Q 017603          232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (369)
Q Consensus       232 ~~~g~lp~~~~~a~~g~-~~~----~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l  306 (369)
                      .+++..|+++|.++.|+ +++    ..++.++..++|..+++++++++|+|+|++.|+||+|+++|++++.++...+..+
T Consensus       148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            99988788888887776 554    3344556677788899999999999999999999999999999886666544444


Q ss_pred             H
Q 017603          307 T  307 (369)
Q Consensus       307 ~  307 (369)
                      +
T Consensus       228 ~  228 (300)
T PRK12876        228 S  228 (300)
T ss_pred             H
Confidence            3

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.1e-29  Score=242.22  Aligned_cols=254  Identities=15%  Similarity=0.166  Sum_probs=176.1

Q ss_pred             HHHHHhhhCccchHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcc
Q 017603           84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (369)
Q Consensus        84 ~k~yl~l~RP~~~~l~~~~~l~G~~~~g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG  162 (369)
                      +|.+++++||++|+...+|+.+|+..++. ++|.   +   +++.+......+.+.|.+|||+|+|.|++|++++.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~~---~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDWL---F---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCCCCChH---H---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            37889999999999999999999987743 3331   1   111111111223344677999999999999865443 48


Q ss_pred             ccCHHHHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603          163 AISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (369)
Q Consensus       163 ~is~~~a~~~~~~l~~~gl~-l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~  241 (369)
                      .++++|+......+..++++ +++.+...   .++..+.++.++++.++.||.||+|+|++++.+++..+..+......|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHH
Confidence            89999986655554444443 33332221   156677888889899999999999999999987765555543333344


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017603          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRI  321 (369)
Q Consensus       242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~  321 (369)
                      .+...+.+++..++++..+++|+.+++..||++|+|+|+++|+||+|+++|+|++.+++..++.++++.++   .  ++.
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~---~--~~~  225 (282)
T PRK13105        151 LVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML---A--LPW  225 (282)
T ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH---H--HHh
Confidence            44456678888888888999999999999999999999999999999999999999999887776654443   1  222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHh--cCCchhhhhh
Q 017603          322 STRDSRPLTSDIDQLRCFAEVLF--TDDSRNAYNG  354 (369)
Q Consensus       322 ~~~~~~~l~~~~~~l~~~~~~~~--~~~~~~~~~~  354 (369)
                      ...+  ..++.+|...+..+.++  ++++++-.+.
T Consensus       226 ~~~~--l~ll~~p~~~~~~~~~~~~~~~~~~l~~~  258 (282)
T PRK13105        226 PGWL--AAVLALPYVVNTARFWSVTDADCERANRG  258 (282)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence            2222  22333455555555554  4454444443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4e-29  Score=239.61  Aligned_cols=259  Identities=20%  Similarity=0.122  Sum_probs=188.3

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcc
Q 017603           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (369)
Q Consensus        83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG  162 (369)
                      -++.++++.|+.+..........+.......++..      ....+++..+.+.++|++|||+|+|+|++|+|+||.+  
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~--   74 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF--   74 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH--
Confidence            46899999999999888887777653321122221      1123334556788999999999999999999999987  


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCC-CcccccchhhHHHHHHHhHHHHHH
Q 017603          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWA  241 (369)
Q Consensus       163 ~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~-~LKr~~~~g~l~vg~~~g~lp~~~  241 (369)
                        |++++......+..+++.++.++....  .++..+.+++++.++++.||.||. ++||.+..+|+.+|..+|..|.++
T Consensus        75 --s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~  150 (285)
T PRK12872         75 --SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLIL  150 (285)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence              556666666666666666665543221  256677788888888999999876 489999899999999999888765


Q ss_pred             H-HHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017603          242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIR  320 (369)
Q Consensus       242 ~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~  320 (369)
                      + +...+.++...++.++..+++.+..+..+|++|+|+|+++|+||+|+++|+|++++++..+..++++..+....... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~-  229 (285)
T PRK12872        151 GVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL-  229 (285)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence            5 44455567777778888888999999999999999999999999999999999999988777666554432222111 


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 017603          321 ISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNG  354 (369)
Q Consensus       321 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  354 (369)
                      .+.++...+.+..+.++...++.+++++++..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (285)
T PRK12872        230 LPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLYL  263 (285)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccccchhHH
Confidence            2333344444445566666777777776664444

>PLN02878 homogentisate phytyltransferase

Probab=99.96  E-value=3.2e-28  Score=229.18  Aligned_cols=181  Identities=25%  Similarity=0.507  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 017603          124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV  203 (369)
Q Consensus       124 ~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l  203 (369)
                      ++..+++..++..+...+|||+|+|+||+|||+||+|||++|+++++.+...+.++|+.+++.++.+     + .+....
T Consensus        25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~-----~-l~~al~   98 (280)
T PLN02878         25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSW-----P-LFWALF   98 (280)
T ss_pred             HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChH-----H-HHHHHH
Confidence            4445556777888889999999999999999999999999999999999999999999999887421     1 233334


Q ss_pred             HHhHheeecCC--CCCCcccccchhhHHHHHHHhHH---HHHHH--HHHhc---CCCHHHHHHHHHHHHHHHHHHHHhhc
Q 017603          204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAIVNDF  273 (369)
Q Consensus       204 ~~~~l~~~Ys~--pP~~LKr~~~~g~l~vg~~~g~l---p~~~~--~a~~g---~~~~~~~ll~~~~~l~~~~~~~~~~~  273 (369)
                      .++++++.||.  ||+|+||+++.........-+..   +++.+  ....|   .++...++..+.+++...++++.||+
T Consensus        99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi  178 (280)
T PLN02878         99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI  178 (280)
T ss_pred             HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            45578899996  99999999987654432222222   22222  12334   23334455544566677789999999


Q ss_pred             cChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHH
Q 017603          274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (369)
Q Consensus       274 ~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~  310 (369)
                      +|+|||++.|++|+|+++|+|++.+++..++.++|..
T Consensus       179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~  215 (280)
T PLN02878        179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA  215 (280)
T ss_pred             cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888764

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.3e-26  Score=221.48  Aligned_cols=212  Identities=21%  Similarity=0.254  Sum_probs=136.4

Q ss_pred             cchHHHHHhhhCccchHHHHHHHHHHHHHhCC--C-CCchhhHHHHHHHHHHHHHH-HHHHhhhhcccccccccccCCCC
Q 017603           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN--F-HWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINEPY  156 (369)
Q Consensus        81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~-~~~~~~~~~~~l~~~~a~~l-~~~a~~~iNd~~D~~~D~~~~~~  156 (369)
                      ..++|.|+++.||++|..++.|+++|.+.+..  . .+..     .+++++....+ .....|.+|||+|+|+|+.|+|+
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            45789999999999999999999999876532  1 1221     11222211111 22345668999999999999865


Q ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (369)
Q Consensus       157 RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~  236 (369)
                      +.   |+...++.......+.+++++++..+....   ++....+.+..+++.+.||.||+|+|++++.+..+.|. + .
T Consensus        80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~-~  151 (282)
T PRK12875         80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y-I  151 (282)
T ss_pred             cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-H
Confidence            43   221112211111111111222222221111   22223333445677999999999999999864443343 3 3


Q ss_pred             HHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603          237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (369)
Q Consensus       237 lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~  307 (369)
                      +|.+ ++++++|++++..++++  .++|+.++++.|+++|+|+|+++|+||+|+++|+|++++++..+..++
T Consensus       152 ~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a  221 (282)
T PRK12875        152 LPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLA  221 (282)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHH
Confidence            5554 45677888877554443  579999999999999999999999999999999999998777665544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.96  E-value=1.9e-27  Score=223.07  Aligned_cols=188  Identities=32%  Similarity=0.537  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc--CCCCCCCCccccCHHHHHHH
Q 017603           97 PPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ  172 (369)
Q Consensus        97 ~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~--~~~~RPl~sG~is~~~a~~~  172 (369)
                      ..++.+++.|....  +..++..      ....+++..+.+.++|.+||+.|+|+|++  |+|+||+++|+++++++..+
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~   75 (257)
T PF01040_consen    2 PLSFLPVLAGLALASGGPFNWPI------FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF   75 (257)
T ss_pred             hHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence            45667777775443  2333321      22223344467889999999999999999  67899999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHH
Q 017603          173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD  252 (369)
Q Consensus       173 ~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~  252 (369)
                      +.++.++++++++..       ++..+.+.+++.+.++.|| +|+++||+++++++.+|++++..+.+++++..++.+..
T Consensus        76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (257)
T PF01040_consen   76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP  147 (257)
T ss_pred             HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence            888888888888544       4556777777777789999 88899999998999999988877777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHH
Q 017603          253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW  298 (369)
Q Consensus       253 ~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~  298 (369)
                      .++++...+++..+....+|++|+|+|+++|+||+|+++|++++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            8888888888888899999999999999999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK08238 hypothetical protein; Validated

Probab=99.94  E-value=9e-26  Score=230.06  Aligned_cols=235  Identities=18%  Similarity=0.209  Sum_probs=181.6

Q ss_pred             cccccccceecccCCCCCCCCCCCCCCcCCCCCcchhhhhhccccc-----cccchHHHHHhhhCccchHHHHHHHHHHH
Q 017603           33 VSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAA-----QETNKWKIRLQLTKPVTWPPLIWGIVCGA  107 (369)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~yl~l~RP~~~~l~~~~~l~G~  107 (369)
                      +.++++++.|.||+..|.|.+..+.++..+|++.++++..-+++-.     ..+.++++|++++||++|...++.. +++
T Consensus       135 ~~l~~~~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~  213 (479)
T PRK08238        135 EAFGERGFDYAGNSAADLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVF-VPL  213 (479)
T ss_pred             HHhCccCeeEecCCHHHHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHH-HHH
Confidence            4567778999999999999999999999999999888544433332     4456799999999999999877764 366


Q ss_pred             HHhCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 017603          108 AASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLA  184 (369)
Q Consensus       108 ~~~g~~-~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~  184 (369)
                      +.++.+ +..  .+. ..+..+++++++.+++|++||++|+|+|++|+  |+||+++|++|+++++.++.+++++|++++
T Consensus       214 l~a~~~~~~~--~~~-~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~  290 (479)
T PRK08238        214 LAAHQFGDLQ--ALL-AALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALA  290 (479)
T ss_pred             HHhcccCChH--HHH-HHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            655443 221  122 23345556778899999999999999999995  799999999999999999999999999888


Q ss_pred             HHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 017603          185 GLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG  264 (369)
Q Consensus       185 ~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~  264 (369)
                      +.+       |+..+.+.+..+++.++||.   ++||+++++++++|+.++.-++.|+. +.+ +++..|++++.+ +..
T Consensus       291 ~~l-------~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a~~-~~~s~wll~~~~-~~~  357 (479)
T PRK08238        291 LAL-------GPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-AIG-VALSFWLLAFSM-FFF  357 (479)
T ss_pred             HHH-------hHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-Hhc-cCHHHHHHHHHH-HHH
Confidence            776       45455555666677889995   79999999999999888543444444 444 777777776443 334


Q ss_pred             HHHHHHhhccChHHhHHCCC
Q 017603          265 LGIAIVNDFKSVEGDRAMGL  284 (369)
Q Consensus       265 ~~~~~~~~~~D~e~D~~aG~  284 (369)
                      +.+.+.+.+.|.+.++..|.
T Consensus       358 l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        358 LSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhHHHHHHHHhcCC
Confidence            55788999999999998886

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.94  E-value=3.6e-27  Score=221.48  Aligned_cols=309  Identities=18%  Similarity=0.155  Sum_probs=222.6

Q ss_pred             cccccccCCCCccccccccccceecccCCCCCCCCCCCCCC-----------cCCCCCcchhhhhhccccc---------
Q 017603           19 TNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDK-----------APAASGSSFNQLLGIKGAA---------   78 (369)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---------   78 (369)
                      +...|.||...|....|.|+-....+...++.-+...++.-           +...+.+.+...++   +.         
T Consensus        12 ~~~~~trp~p~p~~~~~~~~~~a~~~k~q~~~~~~~~~~~is~s~~d~~~~~a~~~pd~~v~~~~~---~~~s~~l~ly~   88 (409)
T KOG1380|consen   12 SRISQTRPLPNPVLIPFSRETSAVNSKSQPTVMTTLTAKLISLSRKDANTVFATATPDSQVTATTG---RWSSRPLALYT   88 (409)
T ss_pred             ceeeeccCCCCCccchhhhhhhcccccccCcccccccccceecccCccccchhhcCCCcceeecch---hhcccchhhcC
Confidence            34566777777888888876555555444443333333210           01111111111122   22         


Q ss_pred             cccchHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (369)
Q Consensus        79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~  155 (369)
                      -+....+.|+||+||+...+++.+...|++++ +.+++.      .+++..++..++.+++|.+||++|...|..|+  +
T Consensus        89 lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~  162 (409)
T KOG1380|consen   89 LPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQ  162 (409)
T ss_pred             CCcchHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhc
Confidence            11234679999999999999999999999876 455554      24455556677888999999999999999998  5


Q ss_pred             CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHH
Q 017603          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      +||+++|++||.+|+.++.+....|..+..+-   +   ||+...+|...+++ +.+||    ++||... .|.++|...
T Consensus       163 ~Rplv~g~isp~hA~~fAt~~g~~G~slL~~g---v---Npl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavV  231 (409)
T KOG1380|consen  163 NRPLVRGRISPLHAVTFATLTGTAGVSLLAFG---V---NPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVV  231 (409)
T ss_pred             ccccccCccChHHHHHHHHHhccccceeeeec---c---cHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHh
Confidence            99999999999999999988888887766542   1   88889999888764 88999    8999987 599999999


Q ss_pred             hHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeC---hhhHHHHHHHHHHHHHHH
Q 017603          235 ISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFG---PETAKWICVGAIDITQIS  310 (369)
Q Consensus       235 g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G---~~~a~~~~~~~~~l~~l~  310 (369)
                      |++|. +||.+++|.+++..|+++.+.+.|++-..-.-...-++|+.++|.+++++.-.   ++.+.+....++.++   
T Consensus       232 GAIPPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~---  308 (409)
T KOG1380|consen  232 GAIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS---  308 (409)
T ss_pred             ccCCccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh---
Confidence            99964 68889999999999999999999987543332333457888999999999873   344555555443332   


Q ss_pred             HHHHHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 017603          311 VAASLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYN  353 (369)
Q Consensus       311 ~~~~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~  353 (369)
                         +....++ .++|| +-.+.++..+.|..+++++++|.+++|+
T Consensus       309 ---~~~~~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRk  350 (409)
T KOG1380|consen  309 ---YAAPSTDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARK  350 (409)
T ss_pred             ---ccccccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHH
Confidence               2221223 35666 7889999999999999999998777554

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.94  E-value=3e-26  Score=210.80  Aligned_cols=208  Identities=25%  Similarity=0.306  Sum_probs=173.3

Q ss_pred             cchHHHHHhhh---CccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHH-HHHHhhhhcccccccccccCC--
Q 017603           81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINE--  154 (369)
Q Consensus        81 ~~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l-~~~a~~~iNd~~D~~~D~~~~--  154 (369)
                      ..+||.|.|+.   ||....+..+|+.+..+++......+ . . .++.+|-.|.+ +++++|++||++|+|+|++.+  
T Consensus        61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p-~-~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRt  137 (353)
T KOG1381|consen   61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP-S-I-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERT  137 (353)
T ss_pred             CccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc-h-h-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhh
Confidence            34699999988   59999999999999987653221111 1 1 24555555555 789999999999999999988  


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (369)
Q Consensus       155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~  234 (369)
                      +.||+++|++|++|++.+-.+.+.+|+++...+       |+....++..++.+.+.|+    -+||.++++++++|.+|
T Consensus       138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgltf  206 (353)
T KOG1381|consen  138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYP----LMKRFTYWPQLVLGLTF  206 (353)
T ss_pred             cccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEee----hhhhcchhHHHHHhhhc
Confidence            589999999999999999888888999988887       5667888988888999999    49999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603          235 ISLPWWAGQALFGTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (369)
Q Consensus       235 g~lp~~~~~a~~g~~~~~~~-ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~  302 (369)
                      +...++||.+.-|+..+.+. -+.+.-..|++.++.++..+|.++|.++|+|+.+.++|+++..|+..+
T Consensus       207 nwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf  275 (353)
T KOG1381|consen  207 NWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF  275 (353)
T ss_pred             chhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence            98888999988898877433 344455679999999999999999999999999999999999988764

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=2.1e-24  Score=204.91  Aligned_cols=198  Identities=14%  Similarity=0.092  Sum_probs=141.6

Q ss_pred             HHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHhe
Q 017603          130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLS  209 (369)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~  209 (369)
                      .+.+..+++|++|||+|+|+|++|+|+||+|||++|+++++.++.++.++++.+....            ...+...++.
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~  121 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFL  121 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence            3456788999999999999999999999999999999999999988866666665443            1122233344


Q ss_pred             eec-----CCCCCCcccccchhhHHHHHHHhHHHHHH--HH------HHhcCCCH--HHHHHHHHHHHHHHHHHHHhhcc
Q 017603          210 YIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--GQ------ALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFK  274 (369)
Q Consensus       210 ~~Y-----s~pP~~LKr~~~~g~l~vg~~~g~lp~~~--~~------a~~g~~~~--~~~ll~~~~~l~~~~~~~~~~~~  274 (369)
                      +.|     +.   ++|+.++.||+.++...|.....+  .+      ...|....  ..+++++..++..+++++.+|++
T Consensus       122 ~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~Kdie  198 (299)
T PRK13592        122 YIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIR  198 (299)
T ss_pred             HHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455     75   899999999999998877543211  11      11232221  12566677888889999999999


Q ss_pred             ChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhh-hh-hhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603          275 SVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQ-IR-ISTRDSRPLTSDIDQLRCFAEVLFTDDS  348 (369)
Q Consensus       275 D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~-l~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~  348 (369)
                      | |||++ |.+|+|+.+|.|++.++...+..++.+  .+.++.. .+ .+.  ...++.++..+++.++++|++++
T Consensus       199 D-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~~~g~~g~--~~l~~~~~~~l~~~~~~lk~p~~  268 (299)
T PRK13592        199 A-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLWNISHVGV--VVLVLNVIWMTVQFEQFIKSPTR  268 (299)
T ss_pred             C-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHHHhhhhHH--HHHHHHHHHHHHHHHHHhcCCCc
Confidence            9 88886 599999999999999888765544322  2222211 11 122  44556667888999999999866

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=9.1e-24  Score=202.13  Aligned_cols=176  Identities=20%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             HHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHhee
Q 017603          131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY  210 (369)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~  210 (369)
                      +.+...++|++|||+|+|+|++|+|+||.+    +++.++.++.+..++|+.+++..       ++  ..+++++.+.++
T Consensus        67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~-------g~--~ll~ll~~l~g~  133 (307)
T PRK13591         67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMD-------GM--LLLAFLPFITGY  133 (307)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHH-------hH--HHHHHHHHHHHH
Confidence            445678999999999999999999999986    77888887777777787777655       33  235677778899


Q ss_pred             ecCCC----CC--CcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCC
Q 017603          211 IYSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL  284 (369)
Q Consensus       211 ~Ys~p----P~--~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~  284 (369)
                      .||.+    |+  ++|..+..||+.+|..+|...+.+.....+.+ ......++......++.+.+||++|+|+|+++|+
T Consensus       134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~  212 (307)
T PRK13591        134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGI  212 (307)
T ss_pred             HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCC
Confidence            99986    55  77888888999999999875443211112221 1111111111122355668999999999999999


Q ss_pred             ccccEEeChhhHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 017603          285 QSLPVAFGPETAKWICVGAIDITQISVAA-SLPTQIR  320 (369)
Q Consensus       285 ~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~-~l~~~l~  320 (369)
                      +|+|+++|+++++++...+..++++.++. .+...++
T Consensus       213 kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~  249 (307)
T PRK13591        213 KTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA  249 (307)
T ss_pred             eeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999988877777765533 3333444

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=1.2e-21  Score=188.10  Aligned_cols=164  Identities=24%  Similarity=0.272  Sum_probs=118.3

Q ss_pred             cccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CC
Q 017603           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY  156 (369)
Q Consensus        79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~  156 (369)
                      +.++++|+|+|++||++|...++....+.+..+..+..  .+.. .+..+++++++++++|++||++|+|+|++|+  |+
T Consensus         6 ~~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          6 PPKNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             ChHHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            34457999999999999998777544333332222211  1112 2334445566788999999999999999984  79


Q ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (369)
Q Consensus       157 RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~  236 (369)
                      ||+++|++|+++++.++.++.++|+++++.+       |+..+.+.+...++.++||.   ++|++++++++.++..++ 
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~-  151 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFV-  151 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHH-
Confidence            9999999999999999999999999888766       44455555566677889995   899999999999888775 


Q ss_pred             HHHHHHHHHhcCCCHHHHHHH
Q 017603          237 LPWWAGQALFGTLTPDIIVLT  257 (369)
Q Consensus       237 lp~~~~~a~~g~~~~~~~ll~  257 (369)
                      ++++.+..+.+ .+.+.|++.
T Consensus       152 lr~~~G~~a~~-~~~s~wll~  171 (295)
T PRK12324        152 LRAIAGGVAIG-VPLSPWLLL  171 (295)
T ss_pred             HHHHHHHHHhC-CCccHHHHH
Confidence            45555444443 344445443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.79  E-value=9.8e-20  Score=164.44  Aligned_cols=264  Identities=17%  Similarity=0.184  Sum_probs=193.9

Q ss_pred             hhhccccccccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHHHHHHHHHHhhhhcccccc--
Q 017603           71 LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYDR--  147 (369)
Q Consensus        71 ~~~~~~~~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~-~~~~~~l~~~~a~~l~~~a~~~iNd~~D~--  147 (369)
                      +.|--.++...++.+.|+-..||+..-.++.|+.+|-+.+-.-+|.-. .+...++|.+ +...+++++|.+|.|+|.  
T Consensus        48 ltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~-avlavh~agnlvntyfdf~k  126 (359)
T KOG4581|consen   48 LTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAF-AVLAVHCAGNLVNTYFDFIK  126 (359)
T ss_pred             ccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHh-hheeeecccchhhhhhhhhh
Confidence            445555666778889999999999999999999999765421112110 1111233333 333478999999999997  


Q ss_pred             cccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH----HHHHHHHHhHheeecCCCCCCccccc
Q 017603          148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSAPPLKLKQNG  223 (369)
Q Consensus       148 ~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~----~~~l~l~~~~l~~~Ys~pP~~LKr~~  223 (369)
                      .+|.+...+|.++...+.+.++..++..+..+|+.....+...    .|.    ..++...++--.++||.+- .+|+..
T Consensus       127 gid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytggi-gfkyia  201 (359)
T KOG4581|consen  127 GIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTGGI-GFKYIA  201 (359)
T ss_pred             ccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEeccc-ceEEEe
Confidence            4788777899999999999999999999999888877655433    231    2233333444578999764 789987


Q ss_pred             chhhHHHHHHHhHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603          224 WIGNFALGASYISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (369)
Q Consensus       224 ~~g~l~vg~~~g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~  302 (369)
                      + |++++-+.+|.+.+ +++..++|++.+..+..++|..+-+-++.+.|+.+|.|.||++|+-|+++..|+..+..++..
T Consensus       202 l-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~  280 (359)
T KOG4581|consen  202 L-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAM  280 (359)
T ss_pred             c-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHH
Confidence            6 67777677776654 345678999988888888888888889999999999999999999999999999998888877


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcC
Q 017603          303 AIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLRCFAEVLFTD  346 (369)
Q Consensus       303 ~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~  346 (369)
                      ++.+.|+.+   ....++.+.|+ ++.+.  +|..++..+.+|++
T Consensus       281 llf~py~lf---~i~~~~~si~~~lpllt--ip~afqiek~frne  320 (359)
T KOG4581|consen  281 LLFAPYLLF---FIFALHCSISFALPLLT--IPMAFQIEKQFRNE  320 (359)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHhHHhh--chhHHhHHHHhhhH
Confidence            766666433   12234456666 44444  78888889999885

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=89.54  E-value=5.5  Score=37.94  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       257 ~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      .+..++...+-...||+-|+|.|+++ ++.=|..-|+
T Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            33445566677899999999999998 7888888775

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=89.50  E-value=4.3  Score=39.48  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       261 ~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      .+.+.+....||+-|+|.|++.+ ++=|+.-|.
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~   95 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA   95 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence            45556678999999999998876 455665554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=88.31  E-value=5.8  Score=39.86  Aligned_cols=31  Identities=19%  Similarity=0.117  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       262 l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      +.+.+-..+||+-|+|-|++++ +.=|+.-|.
T Consensus       134 L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~  164 (375)
T PLN00012        134 FLTGYTQTINDWYDREIDAINE-PYRPIPSGA  164 (375)
T ss_pred             HHHHHHHHHHCeecHhhhccCC-CCCCcCCCc
Confidence            3344567899999999998875 556666664

>PRK13592 ubiA prenyltransferase; Provisional

Probab=88.26  E-value=13  Score=36.09  Aligned_cols=50  Identities=18%  Similarity=0.080  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHHHH
Q 017603          253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICVGA  303 (369)
Q Consensus       253 ~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~~~  303 (369)
                      .++.++..++...+-...||+.|+|-|+.+ ++.=|+--|+   |.++.....+
T Consensus        48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         48 EFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence            333344455566677899999999999765 6777776664   5555554443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.24  E-value=2.1  Score=40.86  Aligned_cols=40  Identities=20%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             HHHhhhhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHH
Q 017603          135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL  177 (369)
Q Consensus       135 ~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~  177 (369)
                      ...-+++||.-|+|.|+++. +.=|..-|+   +.+..+..++.
T Consensus       174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~  214 (285)
T PRK12872        174 SFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILN  214 (285)
T ss_pred             HHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHH
Confidence            44556889999999999876 566765554   44444433333

>PRK13595 ubiA prenyltransferase; Provisional

Probab=87.64  E-value=8.3  Score=37.41  Aligned_cols=23  Identities=30%  Similarity=0.157  Sum_probs=17.7

Q ss_pred             HHHHHHHHhhccChHHhHHCCCc
Q 017603          263 AGLGIAIVNDFKSVEGDRAMGLQ  285 (369)
Q Consensus       263 ~~~~~~~~~~~~D~e~D~~aG~~  285 (369)
                      ......-+||+-|+|.|+++-++
T Consensus        59 ~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595         59 FNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             HHHHHHHHHhhhhhhhhccCCCC
Confidence            34456889999999999887433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.85  E-value=1.7  Score=42.32  Aligned_cols=72  Identities=25%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             hhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHHHH---HHHHHHHHHHhhcccchHHHHHH-HHHhHheeecCC
Q 017603          140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLA---GLGLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA  214 (369)
Q Consensus       140 ~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~---gl~l~~~l~~~~~~~~~~~~~l~-l~~~~l~~~Ys~  214 (369)
                      .+||+-|.|.|+.+. +.=|+.=|+   +.+..+...+.++   ..+++..++...  ..|...+.. +.+++....|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999887 455665553   3333333222222   222222233221  134434433 445556778887


Q ss_pred             CC
Q 017603          215 PP  216 (369)
Q Consensus       215 pP  216 (369)
                      |+
T Consensus       272 ~~  273 (307)
T PRK13591        272 PF  273 (307)
T ss_pred             Cc
Confidence            64

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=86.37  E-value=8.5  Score=35.52  Aligned_cols=48  Identities=25%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             cCCCHHHHHH-HHHHHHHHHHHHHHhhccChHHhHHC-CCccccEEeChh
Q 017603          247 GTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGPE  294 (369)
Q Consensus       247 g~~~~~~~ll-~~~~~l~~~~~~~~~~~~D~e~D~~a-G~~Tl~v~~G~~  294 (369)
                      +..++..... .+..++...+....||+.|.|.|+.+ +++.-|..-|+-
T Consensus        18 ~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i   67 (257)
T PF01040_consen   18 GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI   67 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence            3455543333 33344566678899999999999996 456666665543

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=85.94  E-value=9.6  Score=36.98  Aligned_cols=37  Identities=32%  Similarity=0.533  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHhhccChHHhHHC-CCccccEEeCh
Q 017603          257 TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGP  293 (369)
Q Consensus       257 ~~~~~l~~~~~~~~~~~~D~e~D~~a-G~~Tl~v~~G~  293 (369)
                      ++.+++...+....||+.|+|.|+++ .++.=|..-|+
T Consensus        52 fl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~   89 (295)
T PRK12324         52 FVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGV   89 (295)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence            33344455667899999999999997 45555665554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.66  E-value=6.6  Score=37.81  Aligned_cols=34  Identities=21%  Similarity=0.070  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (369)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~  163 (369)
                      ...+.+.+-..+|++.|+|.|++.. |.=|+.-|.
T Consensus       167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            3344566678999999999999877 666775564

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=85.36  E-value=14  Score=35.37  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603          255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (369)
Q Consensus       255 ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~  293 (369)
                      +..+..++...+....||+.|+|-|+++-. +.=|..-|+
T Consensus        51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            344445566777899999999999999855 566776665

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.95  E-value=7.3  Score=38.43  Aligned_cols=30  Identities=17%  Similarity=0.050  Sum_probs=22.6

Q ss_pred             HHHHHhhhhcccccccccccCC-CCCCCCcc
Q 017603          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (369)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG  162 (369)
                      +...+..++||+-|+|.|+... +.=|+.=|
T Consensus       191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G  221 (331)
T PRK12392        191 FMAIALIIMNDFKSVEGDKEGGLKSLTVMIG  221 (331)
T ss_pred             HHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence            4455667899999999999876 55676445

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=84.46  E-value=17  Score=34.55  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       258 ~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      +..++...+-...||+-|+|-|+.+. +.=|..-|+
T Consensus        45 l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~   79 (276)
T PRK12882         45 AAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGA   79 (276)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCC
Confidence            34445566678999999999999754 777877775

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=83.94  E-value=11  Score=36.30  Aligned_cols=53  Identities=15%  Similarity=-0.042  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhhhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 017603          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAG  185 (369)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~  185 (369)
                      ++.+...+...+||+-|+|.|++.. +.=|..-|   .+.+..+..++..++.++..
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHHHH
Confidence            3345566778999999999999776 45555333   44555555555555544433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=83.64  E-value=12  Score=36.24  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=25.0

Q ss_pred             HHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (369)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~  163 (369)
                      ..+.+.+-..+|++.|+|.|++.. |.=|+.-|+
T Consensus       176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            344566667899999999998776 677776664

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=83.59  E-value=7.3  Score=37.98  Aligned_cols=26  Identities=12%  Similarity=-0.045  Sum_probs=19.6

Q ss_pred             HHHHhhhhcccccccccccCCC-CCCC
Q 017603          134 LTGYTQTINDWYDREIDAINEP-YRPI  159 (369)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~~~~-~RPl  159 (369)
                      ........||+-|+|.|+++.| .=|.
T Consensus       186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v  212 (304)
T PRK07419        186 ATSLILFCSHFHQVEDDLAAGKRSPIV  212 (304)
T ss_pred             HHHHHHHHcCCcchhhHHHcCCcceee
Confidence            3455667899999999999875 3344

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=82.90  E-value=13  Score=35.35  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603          260 YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       260 ~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      .++...+-...||+-|+|.|+.+ +++=|+.-|+
T Consensus        46 ~~~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (277)
T PRK12883         46 VYLGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA   78 (277)
T ss_pred             HHHHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence            33444567899999999999975 4777777664

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=82.87  E-value=10  Score=37.05  Aligned_cols=38  Identities=16%  Similarity=0.103  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHH
Q 017603          263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICV  301 (369)
Q Consensus       263 ~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~  301 (369)
                      ...+....||+-|+|.|++++ +.=|+.-|.   +.+.....
T Consensus        77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~  117 (314)
T PRK07566         77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIA  117 (314)
T ss_pred             HHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHH
Confidence            445567999999999998764 555655554   44444433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=82.56  E-value=20  Score=34.59  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603          260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (369)
Q Consensus       260 ~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~  293 (369)
                      .++...+-...||+.|+|-|+++.+ +.-|..-|+
T Consensus        54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            3455566789999999999998766 578888885

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=81.83  E-value=7.3  Score=37.25  Aligned_cols=29  Identities=24%  Similarity=0.153  Sum_probs=21.5

Q ss_pred             HHHhhhhcccccccccccCC-CCCCCCccc
Q 017603          135 TGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (369)
Q Consensus       135 ~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~  163 (369)
                      ..+...+||+-|.|.|+++. +.=|+.-|+
T Consensus       174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            44567899999999999876 455665553

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=81.62  E-value=5.9  Score=38.42  Aligned_cols=31  Identities=23%  Similarity=0.115  Sum_probs=24.5

Q ss_pred             HHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (369)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~  163 (369)
                      +.+..-..+||+.|+|.|+++. |.=|+.-|+
T Consensus       186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            3456667899999999999876 667776665

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=81.37  E-value=7.7  Score=37.17  Aligned_cols=34  Identities=21%  Similarity=0.006  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (369)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~  163 (369)
                      +..+.+..-..+|++.|+|.|++.. |.=|+.-|+
T Consensus       168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            4444566677899999999999876 667776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=81.17  E-value=20  Score=34.53  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=31.7

Q ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh---hhHHHHH
Q 017603          248 TLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP---ETAKWIC  300 (369)
Q Consensus       248 ~~~~~~~l-l~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~---~~a~~~~  300 (369)
                      ..++...+ ..+..++...+-...||+.|+|-|+++.+ +.=|+.-|+   +.+..+.
T Consensus        40 ~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~   97 (296)
T PRK04375         40 VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG   97 (296)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence            34543332 22334445566789999999999998643 445555564   4444443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=80.99  E-value=23  Score=33.76  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHH
Q 017603          258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICV  301 (369)
Q Consensus       258 ~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~  301 (369)
                      +..++...+-...||+-|+|.|+++. +.=|..-|+   +.+..+..
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~   89 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSI   89 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHH
Confidence            34455666778999999999999864 666666664   44444443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=80.79  E-value=29  Score=33.78  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             HhhccChHHhHHCCCccccEEeCh
Q 017603          270 VNDFKSVEGDRAMGLQSLPVAFGP  293 (369)
Q Consensus       270 ~~~~~D~e~D~~aG~~Tl~v~~G~  293 (369)
                      .||+.|+|-|+.+ +++.|+.-|+
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~   94 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGE   94 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcc
Confidence            9999999999964 6888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 54/337 (16%), Positives = 93/337 (27%), Gaps = 107/337 (31%)

Query: 115 WNLEDVAKSIVCMIMSGPCLTGY-------------TQTINDWYDREIDAINEPYRPIPS 161
           W L    + +V   +       Y                +   Y  + D +    +    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 162 GAISENEVITQI-----------WVLL--LAGLG---LAG--LLD--VWAGHDFPTIFWL 201
             +S  +   ++            VL+  + G G   +A    L   V    DF  IFWL
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFWL 187

Query: 202 AVGG------------SLLSYI----------YSAPPLKLKQ-NGWIGNFALGASY-ISL 237
            +               LL  I           S   L++      +        Y   L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 238 P-----W--WAGQALFG----TL--TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284
                     A  A F      L  T    V   L +     I++ +   ++  D    L
Sbjct: 248 LVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 285 ---------QSLPVAFGPETAKWICVG---AIDITQISVAASLPTQIRISTRDSRPLTSD 332
                    Q LP     E    +       + I    +A S+  +  ++T D      +
Sbjct: 307 LLKYLDCRPQDLP----RE----VLTTNPRRLSI----IAESI--RDGLATWD-NWKHVN 351

Query: 333 IDQL----RCFAEVLFTDDSRNAYNGQMSLMHKFSPD 365
            D+L         VL   + R  ++ ++S+   F P 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFD-RLSV---FPPS 384

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 38 RRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQE 80
          ++L           +K  A D APA         L IK A  E
Sbjct: 23 KKLQ--------ASLKLYADDSAPA---------LAIK-ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00