Citrus Sinensis ID: 017626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHHHccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHccccccccccHHHHccccccccHHHHHccccccccHHHHccccccccHHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MAGIRFSILKSLcsssiypsfkprllhtsnsYFKLARYAEQKHVKLSCAVvnnnydnsrLHSALNSINNqlkvhgfapigktqchkanavssylptsknfcSRRLATfasispflghrsyssffgsktdksteidvpaassgsetdvsnhgivgsdsfdKIKDAWKSVVDGVSytgqkakdelSPQIEQLLdahpylrdvivpVSCYLTGTVLAWVVMPRVLRRFHKYaiqgpvsllsgglsieqvpyeksfwgaledPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVggiggwir
Flexible Loop (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAassgsetdvsnhgivGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Low Complexity Region (SEG)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Disordered region (IsUnstruct)
***IRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFF********************************SFDKIKDAWKSVVDGVSYTGQ*******PQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI*
Disordered Region (DISOPRED)
*********K*************RLLHTSNSYFKLARYAEQKHVKLSCAV*****************NNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF**************************************VGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGP*************PYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMAS****GLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI*
Disordered Region (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKS***************VSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Disordered Region (DISPRO)
**GIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQC****AVSSYLPTSKNFCSRRLATFASISPFL**************************************GSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q8VZL4	497	Mechanosensitive ion chan	yes	no	0.722	0.535	0.570	5e-82

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score =  305 bits (780), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/275 (57%), Positives = 195/275 (70%), Gaps = 9/275 (3%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GG
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGG 318

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
225454344	599	PREDICTED: uncharacterized protein LOC10	0.967	0.594	0.589	1e-116
224064055	534	predicted protein [Populus trichocarpa]	0.945	0.651	0.563	1e-104
449527268	521	PREDICTED: mechanosensitive ion channel	0.913	0.644	0.505	8e-95
449432136	521	PREDICTED: mechanosensitive ion channel	0.913	0.644	0.508	8e-95
356520379	539	PREDICTED: uncharacterized MscS family p	0.942	0.643	0.506	2e-94
356560335	536	PREDICTED: uncharacterized protein LOC10	0.953	0.654	0.510	2e-90
224127740	387	predicted protein [Populus trichocarpa]	0.570	0.542	0.740	2e-90
357504365	548	Mechanosensitive ion channel domain-cont	0.940	0.631	0.485	2e-85
297810151	507	mechanosensitive ion channel domain-cont	0.883	0.641	0.489	4e-83
22328173	497	Mechanosensitive ion channel protein [Ar	0.722	0.535	0.570	3e-80

>gi|225454344|ref|XP_002275920.1| PREDICTED: uncharacterized protein LOC100261915 [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/363 (58%), Positives = 258/363 (71%), Gaps = 7/363 (1%)

Query: 6   FSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALN 65
           F ILKSLC     P  K     + +S    A+YA Q  +K S A  N +        A N
Sbjct: 65  FPILKSLCD----PISKTHSFRSYDSCLDFAKYAYQVELKSSYASSNRSNHTKESPFAAN 120

Query: 66  SINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFG 125
            +N + ++   A    TQC+KA  V+++ PT  N          S+ P   +RSYSS+FG
Sbjct: 121 FVNARFRIPSIASPVDTQCYKAKQVNAFSPTLLNSRFGSSIPLISVIPISKYRSYSSYFG 180

Query: 126 SKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK---DE 182
           SK DK  E +V AA+  SE DVSN G++GSD  DK+KD W+S VD  +Y GQKAK   DE
Sbjct: 181 SKGDKPQEKEVQAATGMSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDE 240

Query: 183 LSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLS 242
           L+P ++QLLD+ PYL+ V++PV C LT T+LAW VMPR+LRRFHKYA QG   LL G L 
Sbjct: 241 LAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLP 300

Query: 243 IEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFL 302
            EQVPYEKSFW ALEDPVRYLITF++F QIG M+APTTIASQY+  AWRGA+ILSFVWFL
Sbjct: 301 EEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFL 360

Query: 303 HRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362
           HRWKTNVF RA+A+QS+ GLDREK+LALD++SSVGLFV+GLMALAEACGVAVQSILTVGG
Sbjct: 361 HRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGG 420

Query: 363 IGG 365
           IGG
Sbjct: 421 IGG 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064055|ref|XP_002301369.1| predicted protein [Populus trichocarpa] gi|222843095|gb|EEE80642.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/371 (56%), Positives = 256/371 (69%), Gaps = 23/371 (6%)

Query: 1   MAGIRFSILK-SLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNY--DN 57
           MAG+R S+LK SLC S    S   + L   N +    R A         A++N  Y  D 
Sbjct: 1   MAGLRLSMLKNSLCIS--INSLSWQSLQFCNVHGSTLRSA--------YAIINRGYYKDE 50

Query: 58  SRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGH 117
           SRL   L +     KV        +Q ++   V  +  TS N   R    F S+ P L +
Sbjct: 51  SRLAGNLTN----FKVVRSDTCVNSQSYRIEPVRGFSSTSSNVLFRSAVPFISMRPELSY 106

Query: 118 RSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQ 177
           RS+S   G+K DK    +VPA+S G++ DVSN G + SD  +K+K+AW+S VD V+Y+GQ
Sbjct: 107 RSFSWSSGAKVDKPVGNEVPASSGGNDVDVSNSGAIVSDWINKVKEAWQSTVDAVTYSGQ 166

Query: 178 KA---KDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPV 234
           KA    DEL+P  +QLLD+H YL++V+VPV   LTGTV+AWVVMPR+LRRFHKY++Q P 
Sbjct: 167 KAIETSDELTPYAQQLLDSHLYLKNVVVPVGSTLTGTVVAWVVMPRLLRRFHKYSLQTPA 226

Query: 235 SLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAV 294
           +LLSGG+S EQ+PYEKS  GALEDP+RYLITFMAF QI +MVAPTTIASQY+AQ WRGA 
Sbjct: 227 ALLSGGISGEQIPYEKSILGALEDPLRYLITFMAFSQIAVMVAPTTIASQYIAQVWRGAA 286

Query: 295 ILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAV 354
           ILSFVWFLHRWKTNVF R +AS   A +D+EK+L LDR+SSVGLFVIGLMALAEACGVAV
Sbjct: 287 ILSFVWFLHRWKTNVFNRVIAS---ATVDQEKLLTLDRVSSVGLFVIGLMALAEACGVAV 343

Query: 355 QSILTVGGIGG 365
           QS LTVGGIGG
Sbjct: 344 QSFLTVGGIGG 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527268|ref|XP_004170634.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 253/370 (68%), Gaps = 34/370 (9%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +           + + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG---------TDRIDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGG 365
           S+LTVGGIGG
Sbjct: 332 SMLTVGGIGG 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432136|ref|XP_004133856.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 188/370 (50%), Positives = 254/370 (68%), Gaps = 34/370 (9%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +        H+   + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG------THR---IDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGG 365
           S+LTVGGIGG
Sbjct: 332 SMLTVGGIGG 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520379|ref|XP_003528840.1| PREDICTED: uncharacterized MscS family protein aq_812-like [Glycine max]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/359 (50%), Positives = 237/359 (66%), Gaps = 12/359 (3%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+   + +  +         +L    +++ Y    L
Sbjct: 1   MAAVRSSSVRRL-GSTIQGSFNMELVQHCHYHHSMC----MNLARLPSDSLSHPYYKREL 55

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
             A N  +N         +G +      A  S  PT   +C R    FAS+S  L HR Y
Sbjct: 56  QFAKNRFSNLAS----ESLGSSHHFGTRASVSVKPTFSGYCFRSALPFASMSHVLNHRMY 111

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           SS  G K  +    +V A S  ++ + +   +VG D  ++IKDAWKSV +  SY G K K
Sbjct: 112 SSSVGDKGSRDGGTEVSAGSGATDINTTGDSVVGGDWAERIKDAWKSVAEAASYAGGKVK 171

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              D+L+P  +QLLD+HPYL  V++PV+  LT T+LAW ++PR+LR+FHKYA QGPVSLL
Sbjct: 172 ETSDDLTPFAQQLLDSHPYLDKVVIPVAGTLTATILAWFLLPRILRKFHKYATQGPVSLL 231

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
              +S+E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI+S
Sbjct: 232 PASVSVEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPLWRGAVIVS 291

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQS 356
           FVWFLHRWKTN+F R ++SQS+ GLD+EK+LALD+ISS+GLFVIG+MALAEACGVAVQS
Sbjct: 292 FVWFLHRWKTNIFARTLSSQSLLGLDKEKVLALDKISSIGLFVIGIMALAEACGVAVQS 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560335|ref|XP_003548448.1| PREDICTED: uncharacterized protein LOC100814954 [Glycine max]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/370 (51%), Positives = 242/370 (65%), Gaps = 19/370 (5%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+H S     LAR+             ++++++   
Sbjct: 1   MAAVRSSSVRRL-GSTIKGSFSMELVHHSMC-MNLARFP------------SDSFNDPYY 46

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISP-FLGHRS 119
              L    NQ        +G +      A     PT   +C      FAS+S   L  R 
Sbjct: 47  KRELQFSKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRM 106

Query: 120 YSSF-FGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           YSS   G K  +    +V A S  S+ +     +VG D  ++IKDAWKSV +  SY G K
Sbjct: 107 YSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDK 166

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
            K   D+L+P  +QLLD+HPYL  V++PV   LT T++AW ++PR+LR+FHKYA+QGPVS
Sbjct: 167 VKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVS 226

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           LL   ++ E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI
Sbjct: 227 LLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVI 286

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           +SFVWFLHRWKTNVF R+++SQS+ GLDREK+ ALD+ISS+GLFVIG+MALAEACGVAVQ
Sbjct: 287 VSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQ 346

Query: 356 SILTVGGIGG 365
           SI+TVGGIGG
Sbjct: 347 SIVTVGGIGG 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127740|ref|XP_002320152.1| predicted protein [Populus trichocarpa] gi|222860925|gb|EEE98467.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/216 (74%), Positives = 189/216 (87%), Gaps = 6/216 (2%)

Query: 153 VGSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLT 209
           +GSD  DK+K+AW+S V  V+Y+ QKAK+   EL+P ++QLLD+HPYL++V+VPV   LT
Sbjct: 2   IGSDWIDKVKEAWQSAVHAVTYSEQKAKEISAELTPYVQQLLDSHPYLKNVVVPVGWTLT 61

Query: 210 GTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAF 269
           GTV+AWVVMPR+LRRFHKY++Q PV+LLSGG S EQ+ YEKS WGALEDP+RY+ITFMAF
Sbjct: 62  GTVVAWVVMPRLLRRFHKYSLQTPVALLSGGTSGEQISYEKSIWGALEDPLRYVITFMAF 121

Query: 270 VQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLA 329
            QI +MVAPTTIASQY+AQAWRGAVILSFVWFLHRWKTNVF R +AS   A +DREK+L 
Sbjct: 122 SQIAVMVAPTTIASQYIAQAWRGAVILSFVWFLHRWKTNVFNRVIAS---ATVDREKLLT 178

Query: 330 LDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365
           LDR+SSVGLFVIG+MALAEACGVAVQSILTVGGIGG
Sbjct: 179 LDRVSSVGLFVIGVMALAEACGVAVQSILTVGGIGG 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504365|ref|XP_003622471.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula] gi|355497486|gb|AES78689.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/373 (48%), Positives = 228/373 (61%), Gaps = 27/373 (7%)

Query: 1   MAGIRFSILKSLCSS-SIYPSFKPRLLHTS-NSYFKLARYAEQKHVKLSCAVVNNNYDNS 58
           M+ IRFS +KSL SS   + +F  +  H++ N    LAR +       S     N + + 
Sbjct: 1   MSAIRFSHVKSLHSSIKGFSNFNVQNYHSNPNGSLNLARISSFCTDFSSRGYSKNGFKSP 60

Query: 59  RLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF---- 114
           ++ +             F  +G    H+    ++   T + F S R+       PF    
Sbjct: 61  KMFAETE----------FRNLGSLSGHRGFKFNAAFET-QGFSSPRVCFSVVNIPFASNS 109

Query: 115 -----LGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHG--IVGSDSFDKIKDAWKS 167
                L  R YSS  G +  K+ E +V   +  S+      G   V  D  D++KD WKS
Sbjct: 110 MMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGGDSFVSGDLVDRMKDTWKS 169

Query: 168 VVDGVSYTGQKAK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRR 224
           VV+ VSY G K K   D ++P  +Q LD+HPYL  V+VPV   LT T++AW ++PR+LR+
Sbjct: 170 VVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVAWFILPRILRK 229

Query: 225 FHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQ 284
           FHKY +Q PVSL    LS E VPYEKSFWGA+EDPVRYL+TF+AF QI  MVAPT IASQ
Sbjct: 230 FHKYGMQSPVSLFQVSLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAAMVAPTAIASQ 289

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           YL   WRGAVILSFVWFLHRWKTNVF R + SQS+ GLDREKMLALD+ISS+GLFVIG+M
Sbjct: 290 YLVPTWRGAVILSFVWFLHRWKTNVFARTLTSQSVLGLDREKMLALDKISSIGLFVIGIM 349

Query: 345 ALAEACGVAVQSI 357
           ALAEACGVAVQSI
Sbjct: 350 ALAEACGVAVQSI 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810151|ref|XP_002872959.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318796|gb|EFH49218.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 228/368 (61%), Gaps = 43/368 (11%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MAG+R S+LKSL   SI  S KP     S S F      ++K    S  ++NN++  S  
Sbjct: 1   MAGVRLSLLKSL-QRSINSSSKPHSAAKSLSGF------QKKEPYASFNLLNNSHARSF- 52

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
                         G  P+   +   +    + L  +K F         SI PFLGH SY
Sbjct: 53  ------------TCGINPLDGPKASPSMVSFTRLHNAKPFN-------YSI-PFLGHSSY 92

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           +  F SK+D      V     G+  D+        D  +K KD  ++ VD VS T +K K
Sbjct: 93  ARAFSSKSDGI----VSPGGDGNGNDI--------DWVEKAKDVLQTSVDAVSETARKTK 140

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              DE+ P ++Q LD++PYL++VIVP+S  +TGT+ AW+VMPR+LRRFH YA+Q    LL
Sbjct: 141 EASDEMIPHVQQFLDSNPYLKEVIVPISLTMTGTLFAWLVMPRILRRFHTYALQSSAKLL 200

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
             G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY +   +GAVILS
Sbjct: 201 PVGFSNEDVPYEKSFWGALEDPARYLVTFVAFAQIAAMVAPTTIAAQYFSPTVKGAVILS 260

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
            VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AEACGVAVQSI
Sbjct: 261 LVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSI 320

Query: 358 LTVGGIGG 365
           LTVGG+GG
Sbjct: 321 LTVGGVGG 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328173|ref|NP_567165.2| Mechanosensitive ion channel protein [Arabidopsis thaliana] gi|75161661|sp|Q8VZL4.1|MSL1_ARATH RecName: Full=Mechanosensitive ion channel protein 1, mitochondrial; AltName: Full=Mechanosensitive channel of small conductance-like 1; AltName: Full=MscS-Like protein 1; Flags: Precursor gi|17381142|gb|AAL36383.1| unknown protein [Arabidopsis thaliana] gi|20465557|gb|AAM20261.1| unknown protein [Arabidopsis thaliana] gi|51971068|dbj|BAD44226.1| unknown protein [Arabidopsis thaliana] gi|51971355|dbj|BAD44342.1| unknown protein [Arabidopsis thaliana] gi|332656450|gb|AEE81850.1| Mechanosensitive ion channel protein [Arabidopsis thaliana]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/275 (57%), Positives = 195/275 (70%), Gaps = 9/275 (3%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GG
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGG 318

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.812	0.601	0.539	2.1e-77
TAIR|locus:505006411	263	AT4G00234 "AT4G00234" [Arabido	0.695	0.973	0.565	1.1e-71

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 171/317 (53%), Positives = 211/317 (66%)

Query:    62 SALNSINNQLKVHGFAPI--GKTQCH-KANAVSSYL------PTSKNFCSR-RLATFASI 111
             S L SI   +K H  A    G    H +A    + L      P+  +F S  RL   A  
Sbjct:     7 SLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKP 66

Query:   112 SPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDG 171
               +LGH SY+  F SK+D    I V +  +GS     N    G+D  +K KD  ++ VD 
Sbjct:    67 FNYLGHSSYARAFSSKSDDFGSI-VASGVTGSGDGNGN----GNDWVEKAKDVLQTSVDA 121

Query:   172 VSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKY 228
             V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ AWVVMPR+LRRFH Y
Sbjct:   122 VTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTY 181

Query:   229 AIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQ 288
             A+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY + 
Sbjct:   182 AMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSP 241

Query:   289 AWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAE 348
               +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AE
Sbjct:   242 TVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAE 301

Query:   349 ACGVAVQSILTVGGIGG 365
             ACGVAVQSILTVGG+GG
Sbjct:   302 ACGVAVQSILTVGGVGG 318

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:505006411 AT4G00234 "AT4G00234" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 151/267 (56%), Positives = 191/267 (71%)

Query:    99 NFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDS 157
             +F S  RL + A    +L H SY+  F SK+D    I V +  +GS     N    G+D 
Sbjct:     3 SFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSI-VASGVTGSGD--GN----GNDW 55

Query:   158 FDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA 214
              +K KD  ++ V+ V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ A
Sbjct:    56 VEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFA 115

Query:   215 WVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274
             W+VMPR+LRRFH YA+Q    LL  G S E +PYEKSFWGALEDP RYL+TF+AF QI  
Sbjct:   116 WIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAA 175

Query:   275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
             MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDR+K+L LD++S
Sbjct:   176 MVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVS 235

Query:   335 SVGLFVIGLMALAEACGVAVQSILTVG 361
             SVGLF IGLMA AEACGVAVQSILTVG
Sbjct:   236 SVGLFAIGLMASAEACGVAVQSILTVG 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       368   0.00085  117 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  242 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.92u 0.11s 36.03t   Elapsed:  00:00:02
  Total cpu time:  35.92u 0.11s 36.03t   Elapsed:  00:00:02
  Start:  Mon May 20 21:15:02 2013   End:  Mon May 20 21:15:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PRK11465	741	putative mechanosensitive channel protein; Provisi	99.25
PRK10334	286	mechanosensitive channel MscS; Provisional	98.55
PRK11281	1113	hypothetical protein; Provisional	97.94
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.89
COG0668	316	MscS Small-conductance mechanosensitive channel [C	97.31
COG3264	835	Small-conductance mechanosensitive channel [Cell e	95.41
PRK10334	286	mechanosensitive channel MscS; Provisional	90.85
PRK11281	1113	hypothetical protein; Provisional	86.94
PF12794	340	MscS_TM: Mechanosensitive ion channel inner membra	83.6

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=99.25  E-value=1.9e-10  Score=124.19  Aligned_cols=123  Identities=14%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             CCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 017626          245 QVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQ--  317 (368)
Q Consensus       245 ~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~P~-----~~i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~--  317 (368)
                      .+.||+.++++++ |+.+++++++++.+...+...     ......++.+..+++++.+++..+.+.+.+.++.+...  
T Consensus       419 ~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~  497 (741)
T PRK11465        419 LNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIH  497 (741)
T ss_pred             HhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            7789999999999 999999999999876653221     12234456666666666444333333333233333221  


Q ss_pred             ---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccccccC
Q 017626          318 ---SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR  368 (368)
Q Consensus       318 ---~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA~  368 (368)
                         .....++++.+++++++++++++++++++|+++|+|+++++|++|++|+|.
T Consensus       498 ~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~Glai  551 (741)
T PRK11465        498 GRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAI  551 (741)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence               112457899999999999999999999999999999999999999999973

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=98.55  E-value=4.2e-07  Score=88.79  Aligned_cols=82  Identities=22%  Similarity=0.282  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhc
Q 017626          283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG  362 (368)
Q Consensus       283 ~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLG  362 (368)
                      ..+..++...++++.++|++.|+++.+.++++.+.   +.|++...++.++.++++++++++++|+.+|+++++++|++|
T Consensus        25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G  101 (286)
T PRK10334         25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG  101 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            34566778888899999999999999888777542   578889999999999999999999999999999999999999


Q ss_pred             ccccc
Q 017626          363 IGGWI  367 (368)
Q Consensus       363 IGGIA  367 (368)
                      ++|+|
T Consensus       102 ~~gla  106 (286)
T PRK10334        102 AAGLA  106 (286)
T ss_pred             HHHHH
Confidence            99987

>PRK11281 hypothetical protein; Provisional

Probab=97.94  E-value=0.00034  Score=79.65  Aligned_cols=80  Identities=14%  Similarity=0.132  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (368)
Q Consensus       285 ~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG  364 (368)
                      .+..+...++++.++|++.|++..+.+.+...+  ...++....++.++++++++++|++++++.+|++++++.+.+|..
T Consensus       835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r--l~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL  912 (1113)
T PRK11281        835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR--LNLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL  912 (1113)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            457788889999999999999998887765332  245667778899999999999999999999999999965554444


Q ss_pred             cc
Q 017626          365 GW  366 (368)
Q Consensus       365 GI  366 (368)
                      |+
T Consensus       913 gV  914 (1113)
T PRK11281        913 SV  914 (1113)
T ss_pred             HH
Confidence            44

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.89  E-value=0.00048  Score=78.34  Aligned_cols=80  Identities=15%  Similarity=0.080  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccc
Q 017626          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (368)
Q Consensus       286 l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGG  365 (368)
                      +..+...++|+.++|++.|++..+.++.+..+  .+.|+.+..++.++++++++++|++++++.+|++++++.+.+|..|
T Consensus       833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galG  910 (1109)
T PRK10929        833 LGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALG  910 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            35667778888899999999999888776443  3578889999999999999999999999999999999877777766


Q ss_pred             cc
Q 017626          366 WI  367 (368)
Q Consensus       366 IA  367 (368)
                      ++
T Consensus       911 Vg  912 (1109)
T PRK10929        911 VG  912 (1109)
T ss_pred             HH
Confidence            64

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=97.31  E-value=0.0017  Score=61.97  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=41.9

Q ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccccc
Q 017626          322 LDREKML-ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI  367 (368)
Q Consensus       322 ~D~t~v~-~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA  367 (368)
                      .+..... ++.++.+++++++++++++..+|+++++++|++|++|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~gla  124 (316)
T COG0668          78 ARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLA  124 (316)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHH
Confidence            3455555 899999999999999999999999999999999999987

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=95.41  E-value=1.3  Score=49.57  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH---Hhhhcc
Q 017626          287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI---LTVGGI  363 (368)
Q Consensus       287 ~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaL---LAgLGI  363 (368)
                      ..+...++++.+++++.|++.++.+..+..+  ...|.-+--.+.++++++++++|+++.++++|+|.+++   .+.+|+
T Consensus       559 ~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r--~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsv  636 (835)
T COG3264         559 GALLQAVLLFLITYVLTRNLPGWLEVRVLQR--LDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSV  636 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhh
Confidence            4566777888889999999999888665543  35676677888999999999999999999999999854   344554


Q ss_pred             c
Q 017626          364 G  364 (368)
Q Consensus       364 G  364 (368)
                      |
T Consensus       637 G  637 (835)
T COG3264         637 G  637 (835)
T ss_pred             h
Confidence            4

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=90.85  E-value=12  Score=36.84  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017626          203 PVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV  276 (368)
Q Consensus       203 ~Lliilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll  276 (368)
                      .++..++..+++|++.+.+.+.+++..++.              ..|..+.+.+.+-.+++++++++..+...+
T Consensus        30 ~i~~al~il~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l   89 (286)
T PRK10334         30 NIVAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRV   89 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344444455556666666666666665544              356677777888888888888777765544

>PRK11281 hypothetical protein; Provisional

Probab=86.94  E-value=12  Score=43.65  Aligned_cols=58  Identities=10%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 017626          291 RGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACGV  352 (368)
Q Consensus       291 ~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~----~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGV  352 (368)
                      ....-+.+.|+++.+...+    .....    .-+.+++.+..+.+-++-++|++..+++...++.
T Consensus       580 ~~~~~~~~~w~~~~~~~~~----~~~~Gl~~~HF~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~  641 (1113)
T PRK11281        580 SWSLKLALFWLVFATCYRV----LRPNGVAERHFGMPKEQVSHFRRQIVRLSLALLPLLFWSVVAE  641 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hCCCCeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445667766655432    12111    1356778888888888888888777777766544

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1

Probab=83.60  E-value=52  Score=33.13  Aligned_cols=72  Identities=11%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626          289 AWRGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (368)
Q Consensus       289 i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~----~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG  364 (368)
                      +.....-..+.|+++.+...+    ..++.    .=+.+++.++.+.|.++-+++++..+++...+..+...-++...+|
T Consensus        84 l~~~l~~~a~~~~~~~~~~~l----~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LG  159 (340)
T PF12794_consen   84 LGAALLAMALFWLVFEFFRRL----LRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLG  159 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHH
Confidence            334444445556666555432    22211    1356788999999999999999999999988876555544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 48/332 (14%), Positives = 92/332 (27%), Gaps = 104/332 (31%)

Query: 17  IYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGF 76
           +Y   + RL + +  + K      Q ++KL  A+         L  A N     + + G 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKN-----VLIDGV 158

Query: 77  APIGKT--------------------------QCHKANAV-----SSYLPTSKNFCSRRL 105
              GKT                           C+    V             N+ SR  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 106 ATFASISPFLGHRSY-SSFFGSKTDKSTEI--DVPAASSGSETDVSNHGIVGSDSFD--- 159
            +          ++       SK  ++  +             +V N      ++F+   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQNAKAW--NAFNLSC 266

Query: 160 KI----KDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA- 214
           KI    +   K V D +S                    H  L    + ++     ++L  
Sbjct: 267 KILLTTRF--KQVTDFLSAATTT---------------HISLDHHSMTLTPDEVKSLLLK 309

Query: 215 WVVM-----PRVLRRFHKYAIQGPVSLLSGGLSI----EQVPYEK------SFWGALEDP 259
           ++       PR +   +   +      +  GL+     + V  +K      S    LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 260 -VRYLITFMAFVQIGMMVAPTTIASQYLAQAW 290
             R +     F ++ +      I +  L+  W
Sbjct: 370 EYRKM-----FDRLSVFPPSAHIPTILLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	98.49
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	98.23
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	85.72

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=98.49  E-value=1.8e-07  Score=89.31  Aligned_cols=80  Identities=23%  Similarity=0.313  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (368)
Q Consensus       285 ~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG  364 (368)
                      ++.++...++++.++|++.|++..+..++..+.   +.|++..+++.+++++++++++++++|+.+|+++++++|++|++
T Consensus        27 ~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~  103 (286)
T 2vv5_A           27 YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAA  103 (286)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            456777888888999999999998888777653   57889999999999999999999999999999999999999999


Q ss_pred             ccc
Q 017626          365 GWI  367 (368)
Q Consensus       365 GIA  367 (368)
                      |+|
T Consensus       104 g~a  106 (286)
T 2vv5_A          104 GLV  106 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=98.23  E-value=4.3e-06  Score=79.60  Aligned_cols=80  Identities=11%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhh
Q 017626          288 QAWRGAVILSFVWFLHRWKTNVFTRAMAS----QS--IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVG  361 (368)
Q Consensus       288 ~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~----~~--~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgL  361 (368)
                      ....++.++.+.|+..++.+.+...+...    +.  ..+.+++..+++.+++++++++++++++|+.+|+++++++|++
T Consensus        20 ~~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~   99 (285)
T 3udc_A           20 FLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVA   99 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            33344444455555555555444444332    11  1233467889999999999999999999999999999999999


Q ss_pred             cccccc
Q 017626          362 GIGGWI  367 (368)
Q Consensus       362 GIGGIA  367 (368)
                      |++|+|
T Consensus       100 g~~g~a  105 (285)
T 3udc_A          100 GIGSLA  105 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=85.72  E-value=8  Score=36.27  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 017626          206 CYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVA  277 (368)
Q Consensus       206 iilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~  277 (368)
                      .+++..+++|++.+.+.+.+.++.++.              ..|..+...+.+-++++++++++..+...+.
T Consensus        33 ~~~~i~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~g   90 (286)
T 2vv5_A           33 AALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRVG   90 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333444445555555555555555544              2456777888899999999988888766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d2vv5a3	86	f.34.1.1 (A:27-112) Mechanosensitive channel prote	8e-06

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Length = 86

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           Y         I+     + R  +N   R M S+    +D      L  +   G+    L+
Sbjct: 1   YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLI 57

Query: 345 ALAEACGVAVQSILTVGGIGG 365
           A     GV   S++ V G  G
Sbjct: 58  AALGRVGVQTASVIAVLGAAG 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	99.14
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	91.5

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=4.1e-11  Score=93.48  Aligned_cols=77  Identities=22%  Similarity=0.296  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccccc
Q 017626          288 QAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI  367 (368)
Q Consensus       288 ~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA  367 (368)
                      ++...++++.++|++.|+++...++..+++   +.|++..+++.++.++++++++++++|+.+|+|+++++|++|++|+|
T Consensus         4 ~il~~l~il~i~~~i~~~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gva   80 (86)
T d2vv5a3           4 NIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLV   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            455677788899999999999888877653   57899999999999999999999999999999999999999999987

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.35  Score=35.75  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 017626          206 CYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAP  278 (368)
Q Consensus       206 iilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~P  278 (368)
                      ..++..++.|.+.|.+.+.++|..+|+              ..|+.+.+.+.+-.++.++++++..+......
T Consensus         7 ~~l~il~i~~~i~~~i~~~~~~~~~~~--------------~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi   65 (86)
T d2vv5a3           7 AALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRVGV   65 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334444455666666666666666655              35788889999999999999999998776533